mm39_v1_chr19_-_20368029_20368044	5.76168	Runx3	ENSMUST00000235280.2|Anxa1|ENSMUSG00000024659.16|annexin A1
mm39_v1_chr7_+_126690525_126690596	5.60631	Runx3	ENSMUST00000056288.7|AI467606|ENSMUSG00000045165.7|expressed sequence AI467606	ENSMUST00000206102.2|AI467606|ENSMUSG00000045165.7|expressed sequence AI467606
mm39_v1_chr13_-_22225527_22225533	5.57104	Runx3	ENSMUST00000102977.4|H4c9|ENSMUSG00000060639.6|H4 clustered histone 9
mm39_v1_chr15_-_78739717_78739736	5.51181	Runx3	ENSMUST00000044584.6|Lgals2|ENSMUSG00000043501.6|lectin, galactose-binding, soluble 2
mm39_v1_chr17_+_27775637_27775669	4.23008	Runx3	ENSMUST00000117254.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231243.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231358.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000118570.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231796.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr17_+_27775613_27775627	4.18623	Runx3	ENSMUST00000231780.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232253.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232552.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000117600.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr17_+_27775471_27775609	4.09707	Runx3	ENSMUST00000118599.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232265.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232013.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000114888.11|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231874.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000119486.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231825.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231866.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr13_-_59917569_59917640	4.04948	Runx3	ENSMUST00000057115.7|Isca1|ENSMUSG00000044792.8|iron-sulfur cluster assembly 1
mm39_v1_chr4_-_120427449_120427501	3.82102	Runx3	ENSMUST00000030381.8|Ctps|ENSMUSG00000028633.8|cytidine 5'-triphosphate synthase
mm39_v1_chr2_+_4022537_4022557	3.55727	Runx3	ENSMUST00000177457.8|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr12_+_26519203_26519203	3.4336	Runx3	ENSMUST00000020969.5|Cmpk2|ENSMUSG00000020638.9|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
mm39_v1_chr17_+_28547445_28547526	3.16826	Runx3	ENSMUST00000042334.16|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A
mm39_v1_chr17_+_28547533_28547544	2.96172	Runx3	ENSMUST00000233427.2|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A	ENSMUST00000233937.2|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A
mm39_v1_chr4_-_116484675_116484700	2.94188	Runx3	ENSMUST00000081182.5|Nasp|ENSMUSG00000028693.16|nuclear autoantigenic sperm protein (histone-binding)	ENSMUST00000030457.12|Nasp|ENSMUSG00000028693.16|nuclear autoantigenic sperm protein (histone-binding)
mm39_v1_chr9_+_106306736_106306808	2.90457	Runx3	ENSMUST00000098994.7|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29	ENSMUST00000059802.7|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29	ENSMUST00000213448.2|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29	ENSMUST00000217081.2|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29
mm39_v1_chr17_+_28547548_28547571	2.90043	Runx3	ENSMUST00000233895.2|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A	ENSMUST00000232867.2|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A
mm39_v1_chr10_+_76367427_76367492	2.84885	Runx3	ENSMUST00000048678.7|Lss|ENSMUSG00000033105.13|lanosterol synthase
mm39_v1_chr9_-_107971640_107971687	2.75597	Runx3	ENSMUST00000081309.13|Apeh|ENSMUSG00000032590.15|acylpeptide hydrolase	ENSMUST00000191985.2|Apeh|ENSMUSG00000032590.15|acylpeptide hydrolase
mm39_v1_chr11_-_5828251_5828292	2.45935	Runx3	ENSMUST00000102922.10|Pold2|ENSMUSG00000020471.12|polymerase (DNA directed), delta 2, regulatory subunit
mm39_v1_chr13_-_23735822_23735849	2.44168	Runx3	ENSMUST00000102971.2|H4c6|ENSMUSG00000069274.4|H4 clustered histone 6
mm39_v1_chr13_-_22016364_22016369	2.40092	Runx3	ENSMUST00000102979.2|H4c18|ENSMUSG00000069305.4|H4 clustered histone 18
mm39_v1_chr9_+_69919822_69919877	2.20215	Runx3	ENSMUST00000118198.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000119905.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000119413.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000140305.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2	ENSMUST00000122087.8|Gtf2a2|ENSMUSG00000033543.18|general transcription factor II A, 2
mm39_v1_chr10_-_62438040_62438070	2.13527	Runx3	ENSMUST00000045866.9|Ddx21|ENSMUSG00000020075.9|DExD box helicase 21
mm39_v1_chr9_-_107971729_107971805	2.10542	Runx3	ENSMUST00000193254.6|Apeh|ENSMUSG00000032590.15|acylpeptide hydrolase
mm39_v1_chr9_+_106306598_106306657	2.00182	Runx3	ENSMUST00000150576.8|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29
mm39_v1_chr13_+_51799268_51799342	1.87285	Runx3	ENSMUST00000075853.6|Cks2|ENSMUSG00000062248.6|CDC28 protein kinase regulatory subunit 2
mm39_v1_chr5_+_33176160_33176209	1.64474	Runx3	ENSMUST00000019109.8|Ywhah|ENSMUSG00000018965.12|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm39_v1_chr13_-_51888737_51888799	1.53109	Runx3	ENSMUST00000110039.2|Sema4d|ENSMUSG00000021451.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm39_v1_chr18_-_34784746_34784794	1.52281	Runx3	ENSMUST00000025228.12|Cdc23|ENSMUSG00000024370.18|CDC23 cell division cycle 23	ENSMUST00000133181.2|Cdc23|ENSMUSG00000024370.18|CDC23 cell division cycle 23
mm39_v1_chr17_+_36190662_36190714	1.48321	Runx3	ENSMUST00000025292.15|Dhx16|ENSMUSG00000024422.15|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm39_v1_chr11_-_70300836_70300869	1.43221	Runx3	ENSMUST00000019065.10|Pelp1|ENSMUSG00000018921.12|proline, glutamic acid and leucine rich protein 1	ENSMUST00000135148.2|Pelp1|ENSMUSG00000018921.12|proline, glutamic acid and leucine rich protein 1
mm39_v1_chr11_-_100098333_100098374	1.40124	Runx3	ENSMUST00000007272.8|Krt14|ENSMUSG00000045545.9|keratin 14
mm39_v1_chr11_-_70111796_70111890	1.29426	Runx3	ENSMUST00000060010.3|Slc16a13|ENSMUSG00000044367.8|solute carrier family 16 (monocarboxylic acid transporters), member 13	ENSMUST00000190533.2|Slc16a13|ENSMUSG00000044367.8|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm39_v1_chr7_+_28508220_28508254	1.27722	Runx3	ENSMUST00000172529.8|Hnrnpl|ENSMUSG00000015165.17|heterogeneous nuclear ribonucleoprotein L
mm39_v1_chr13_-_21934675_21934719	1.2043	Runx3	ENSMUST00000102983.2|H4c12|ENSMUSG00000064288.5|H4 clustered histone 12
mm39_v1_chr7_-_44624165_44624275	1.18723	Runx3	ENSMUST00000212836.2|Cpt1c|ENSMUSG00000007783.11|carnitine palmitoyltransferase 1c	ENSMUST00000212255.2|Cpt1c|ENSMUSG00000007783.11|carnitine palmitoyltransferase 1c	ENSMUST00000063761.8|Cpt1c|ENSMUSG00000007783.11|carnitine palmitoyltransferase 1c
mm39_v1_chr5_+_115149170_115149269	1.16671	Runx3	ENSMUST00000031530.9|Sppl3|ENSMUSG00000029550.12|signal peptide peptidase 3
mm39_v1_chr7_-_25516041_25516078	1.07594	Runx3	ENSMUST00000043314.10|Cyp2s1|ENSMUSG00000040703.12|cytochrome P450, family 2, subfamily s, polypeptide 1
mm39_v1_chr11_-_84807164_84807197	1.07537	Runx3	ENSMUST00000103195.5|Znhit3|ENSMUSG00000020526.13|zinc finger, HIT type 3
mm39_v1_chr2_-_151583155_151583232	0.954159	Runx3	ENSMUST00000042452.11|Psmf1|ENSMUSG00000032869.16|proteasome (prosome, macropain) inhibitor subunit 1
mm39_v1_chr4_-_117749191_117749237	0.873441	Runx3	ENSMUST00000030265.4|Dph2|ENSMUSG00000028540.7|DPH2 homolog
mm39_v1_chr5_+_121535999_121536072	0.840448	Runx3	ENSMUST00000042163.15|Naa25|ENSMUSG00000042719.18|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm39_v1_chr9_+_121548237_121548344	0.807546	Runx3	ENSMUST00000035112.13|Nktr|ENSMUSG00000032525.16|natural killer tumor recognition sequence	ENSMUST00000182311.8|Nktr|ENSMUSG00000032525.16|natural killer tumor recognition sequence
mm39_v1_chr10_+_42378193_42378286	0.79864	Runx3	ENSMUST00000105499.2|Snx3|ENSMUSG00000019804.13|sorting nexin 3
mm39_v1_chr7_+_78432867_78432867	0.789404	Runx3	ENSMUST00000032840.5|Mrps11|ENSMUSG00000030611.11|mitochondrial ribosomal protein S11
mm39_v1_chr4_-_70328659_70328702	0.76008	Runx3	ENSMUST00000144099.8|Cdk5rap2|ENSMUSG00000039298.17|CDK5 regulatory subunit associated protein 2
mm39_v1_chr6_-_100648086_100648140	0.752555	Runx3	ENSMUST00000089245.7|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)	ENSMUST00000113312.9|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)	ENSMUST00000170667.8|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)
mm39_v1_chr13_-_23882437_23882443	0.70634	Runx3	ENSMUST00000102967.3|H4c3|ENSMUSG00000060678.6|H4 clustered histone 3
mm39_v1_chr1_+_74317709_74317709	0.676641	Runx3	ENSMUST00000077985.4|Gpbar1|ENSMUSG00000064272.4|G protein-coupled bile acid receptor 1
mm39_v1_chr6_-_136781406_136781425	0.669814	Runx3	ENSMUST00000179285.3|H4f16|ENSMUSG00000096010.3|H4 histone 16
mm39_v1_chrX_-_72502595_72502652	0.659681	Runx3	ENSMUST00000033737.15|Haus7|ENSMUSG00000031371.15|HAUS augmin-like complex, subunit 7	ENSMUST00000077243.5|Haus7|ENSMUSG00000031371.15|HAUS augmin-like complex, subunit 7
mm39_v1_chr10_+_79590910_79590972	0.652397	Runx3	ENSMUST00000219981.2|Fgf22|ENSMUSG00000020327.5|fibroblast growth factor 22	ENSMUST00000219228.2|Fgf22|ENSMUSG00000020327.5|fibroblast growth factor 22	ENSMUST00000020577.4|Fgf22|ENSMUSG00000020327.5|fibroblast growth factor 22
mm39_v1_chr7_+_140796537_140796557	0.63305	Runx3	ENSMUST00000141804.2|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr6_+_124690060_124690085	0.580093	Runx3	ENSMUST00000130279.2|Phb2|ENSMUSG00000004264.18|prohibitin 2
mm39_v1_chr16_-_20972750_20972750	0.514776	Runx3	ENSMUST00000170665.3|Teddm3|ENSMUSG00000090356.3|transmembrane epididymal family member 3
mm39_v1_chr11_-_70111602_70111660	0.437273	Runx3	ENSMUST00000141290.2|Slc16a13|ENSMUSG00000044367.8|solute carrier family 16 (monocarboxylic acid transporters), member 13	ENSMUST00000159867.2|Slc16a13|ENSMUSG00000044367.8|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm39_v1_chr3_+_95566082_95566168	0.428321	Runx3	ENSMUST00000037947.15|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1	ENSMUST00000178686.2|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1
mm39_v1_chr1_+_82891043_82891050	0.420663	Runx3	ENSMUST00000220768.2|A030005L19Rik|ENSMUSG00000113880.2|RIKEN cDNA A030005L19 gene
mm39_v1_chr17_-_45744637_45744671	0.404249	Runx3	ENSMUST00000024727.10|Cdc5l|ENSMUSG00000023932.10|cell division cycle 5-like (S. pombe)
mm39_v1_chrX_-_97934387_97934598	0.38585	Runx3	ENSMUST00000113826.8|Ophn1|ENSMUSG00000031214.14|oligophrenin 1	ENSMUST00000033560.9|Ophn1|ENSMUSG00000031214.14|oligophrenin 1	ENSMUST00000142267.2|Ophn1|ENSMUSG00000031214.14|oligophrenin 1
mm39_v1_chr11_-_32217547_32217707	0.36953	Runx3	ENSMUST00000109389.9|Nprl3|ENSMUSG00000020289.16|nitrogen permease regulator-like 3	ENSMUST00000129010.2|Nprl3|ENSMUSG00000020289.16|nitrogen permease regulator-like 3	ENSMUST00000020530.12|Nprl3|ENSMUSG00000020289.16|nitrogen permease regulator-like 3
mm39_v1_chr4_-_133225849_133225867	0.350189	Runx3	ENSMUST00000125541.2|Trnp1|ENSMUSG00000056596.9|TMF1-regulated nuclear protein 1
mm39_v1_chr10_-_116417333_116417416	0.340473	Runx3	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr7_-_141674466_141674532	0.324261	Runx3	ENSMUST00000209890.2|Gm45618|ENSMUSG00000109859.2|predicted gene 45618
mm39_v1_chr9_+_110361561_110361669	0.316782	Runx3	ENSMUST00000153838.8|Setd2|ENSMUSG00000044791.17|SET domain containing 2
mm39_v1_chr18_-_61919707_61919773	0.280935	Runx3	ENSMUST00000120472.2|Afap1l1|ENSMUSG00000033032.16|actin filament associated protein 1-like 1
mm39_v1_chr10_+_127919142_127919183	0.274459	Runx3	ENSMUST00000026459.6|Atp5b|ENSMUSG00000025393.13|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm39_v1_chr2_-_53081199_53081296	0.256219	Runx3	ENSMUST00000239398.2|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A	ENSMUST00000076313.14|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A	ENSMUST00000210789.3|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A
mm39_v1_chr2_-_50186690_50186813	0.247907	Runx3	ENSMUST00000144143.8|Mmadhc|ENSMUSG00000026766.17|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	ENSMUST00000102769.11|Mmadhc|ENSMUSG00000026766.17|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	ENSMUST00000133768.2|Mmadhc|ENSMUSG00000026766.17|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm39_v1_chr13_-_115238427_115238520	0.233331	Runx3	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chr9_+_121548469_121548539	0.210078	Runx3	ENSMUST00000182225.8|Nktr|ENSMUSG00000032525.16|natural killer tumor recognition sequence
mm39_v1_chr13_+_21919225_21919240	0.168899	Runx3	ENSMUST00000087714.6|H4c11|ENSMUSG00000067455.6|H4 clustered histone 11
mm39_v1_chr2_+_37080286_37080286	0.159515	Runx3	ENSMUST00000218602.2|Olfr365|ENSMUSG00000059429.4|olfactory receptor 365
mm39_v1_chr9_-_78389006_78389033	0.158178	Runx3	ENSMUST00000042235.15|Eef1a1|ENSMUSG00000037742.15|eukaryotic translation elongation factor 1 alpha 1
mm39_v1_chr18_+_37939442_37939506	0.143055	Runx3	ENSMUST00000076807.7|Pcdhgc3|ENSMUSG00000102918.2|protocadherin gamma subfamily C, 3
mm39_v1_chr18_+_47245204_47245214	0.141056	Runx3	ENSMUST00000234633.2|Hspe1-rs1|ENSMUSG00000117621.2|heat shock protein 1 (chaperonin 10), related sequence 1
mm39_v1_chr15_+_40518414_40518450	0.139841	Runx3	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr12_-_98225676_98225718	0.0371823	Runx3	ENSMUST00000021390.9|Galc|ENSMUSG00000021003.11|galactosylceramidase
mm39_v1_chr3_-_7678796_7678826	0.0272376	Runx3	ENSMUST00000192202.6|Il7|ENSMUSG00000040329.15|interleukin 7
mm39_v1_chr14_-_98406977_98407031	0.0266813	Runx3	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chr7_+_140796559_140796613	0.0125002	Runx3	ENSMUST00000148975.3|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr9_+_58395850_58395886	0.0107053	Runx3	ENSMUST00000085658.5|Insyn1|ENSMUSG00000066607.6|inhibitory synaptic factor 1
mm39_v1_chr1_+_40505136_40505168	0.00370187	Runx3	ENSMUST00000087983.8|Il18r1|ENSMUSG00000026070.16|interleukin 18 receptor 1	ENSMUST00000195684.6|Il18r1|ENSMUSG00000026070.16|interleukin 18 receptor 1	ENSMUST00000108044.4|Il18r1|ENSMUSG00000026070.16|interleukin 18 receptor 1
