mm39_v1_chr2_+_4022537_4022557	3.79824	Msx2_Hoxd4	ENSMUST00000177457.8|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr1_-_132318039_132318105	3.74934	Msx2_Hoxd4	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr15_+_6673167_6673187	3.31836	Msx2_Hoxd4	ENSMUST00000163073.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr5_+_117378510_117378529	2.69846	Msx2_Hoxd4	ENSMUST00000111975.3|Taok3|ENSMUSG00000061288.14|TAO kinase 3
mm39_v1_chrX_+_135145813_135145836	2.54931	Msx2_Hoxd4	ENSMUST00000048687.11|Tceal9|ENSMUSG00000042712.11|transcription elongation factor A like 9
mm39_v1_chr18_-_43610829_43610868	2.44443	Msx2_Hoxd4	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr3_-_14843512_14843526	2.25779	Msx2_Hoxd4	ENSMUST00000094365.11|Car1|ENSMUSG00000027556.16|carbonic anhydrase 1
mm39_v1_chr1_+_45834645_45834692	2.16934	Msx2_Hoxd4	ENSMUST00000147308.2|Wdr75|ENSMUSG00000025995.17|WD repeat domain 75
mm39_v1_chrX_+_55500170_55500264	1.88671	Msx2_Hoxd4	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr6_-_136918885_136918909	1.74952	Msx2_Hoxd4	ENSMUST00000111891.4|Arhgdib|ENSMUSG00000030220.14|Rho, GDP dissociation inhibitor (GDI) beta
mm39_v1_chrX_+_149330371_149330455	1.61391	Msx2_Hoxd4	ENSMUST00000066337.13|Alas2|ENSMUSG00000025270.14|aminolevulinic acid synthase 2, erythroid	ENSMUST00000112715.2|Alas2|ENSMUSG00000025270.14|aminolevulinic acid synthase 2, erythroid
mm39_v1_chr18_+_34973605_34973646	1.57938	Msx2_Hoxd4	ENSMUST00000043484.8|Reep2|ENSMUSG00000038555.8|receptor accessory protein 2
mm39_v1_chr7_-_115459082_115459098	1.55873	Msx2_Hoxd4	ENSMUST00000206123.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr5_-_62923463_62923615	1.55717	Msx2_Hoxd4	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr19_-_46033353_46033724	1.53691	Msx2_Hoxd4	ENSMUST00000026252.14|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000156585.9|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000185355.7|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000152946.8|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr7_-_120673761_120673795	1.46764	Msx2_Hoxd4	ENSMUST00000047194.4|Igsf6|ENSMUSG00000035004.4|immunoglobulin superfamily, member 6
mm39_v1_chr7_+_89814713_89814756	1.39422	Msx2_Hoxd4	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr19_+_45433899_45433982	1.35463	Msx2_Hoxd4	ENSMUST00000224478.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein
mm39_v1_chr6_-_87510200_87510246	1.29387	Msx2_Hoxd4	ENSMUST00000113637.9|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25	ENSMUST00000071024.7|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25
mm39_v1_chr6_-_36787096_36787155	1.07664	Msx2_Hoxd4	ENSMUST00000201321.2|Ptn|ENSMUSG00000029838.12|pleiotrophin	ENSMUST00000101534.5|Ptn|ENSMUSG00000029838.12|pleiotrophin
mm39_v1_chr17_+_46471950_46471997	1.07577	Msx2_Hoxd4	ENSMUST00000024748.14|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2	ENSMUST00000172170.8|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2
mm39_v1_chr1_-_149836974_149837058	1.0713	Msx2_Hoxd4	ENSMUST00000190507.2|Pla2g4a|ENSMUSG00000056220.15|phospholipase A2, group IVA (cytosolic, calcium-dependent)	ENSMUST00000070200.15|Pla2g4a|ENSMUSG00000056220.15|phospholipase A2, group IVA (cytosolic, calcium-dependent)
mm39_v1_chr7_-_73191484_73191503	1.0462	Msx2_Hoxd4	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr7_-_45570828_45570868	1.00067	Msx2_Hoxd4	ENSMUST00000038876.13|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr9_-_114219685_114219755	0.963665	Msx2_Hoxd4	ENSMUST00000084881.5|Crtap|ENSMUSG00000032431.7|cartilage associated protein
mm39_v1_chr7_-_55669702_55669702	0.962759	Msx2_Hoxd4	ENSMUST00000052204.6|Nipa1|ENSMUSG00000047037.6|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
mm39_v1_chr11_-_79421397_79421435	0.886201	Msx2_Hoxd4	ENSMUST00000103236.4|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a	ENSMUST00000170422.4|Evi2|ENSMUSG00000070354.14|ecotropic viral integration site 2	ENSMUST00000170799.8|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a
mm39_v1_chr1_-_165535654_165535668	0.867342	Msx2_Hoxd4	ENSMUST00000097474.9|Rcsd1|ENSMUSG00000040723.15|RCSD domain containing 1
mm39_v1_chr7_-_45570254_45570307	0.851729	Msx2_Hoxd4	ENSMUST00000164119.3|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr7_-_45570538_45570586	0.834552	Msx2_Hoxd4	ENSMUST00000210297.2|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr18_+_4920513_4920584	0.83143	Msx2_Hoxd4	ENSMUST00000126977.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr11_+_67061908_67062046	0.826825	Msx2_Hoxd4	ENSMUST00000018641.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr11_+_67061837_67061866	0.820319	Msx2_Hoxd4	ENSMUST00000170159.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chrX_+_100683662_100683714	0.8163	Msx2_Hoxd4	ENSMUST00000119299.8|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	ENSMUST00000044475.5|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm39_v1_chr5_-_23821523_23821596	0.808286	Msx2_Hoxd4	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr6_+_68233361_68233373	0.788908	Msx2_Hoxd4	ENSMUST00000103320.3|Igkv14-111|ENSMUSG00000095771.3|immunoglobulin kappa variable 14-111
mm39_v1_chrX_+_158491589_158491638	0.778711	Msx2_Hoxd4	ENSMUST00000080394.13|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr7_-_115423934_115423987	0.772982	Msx2_Hoxd4	ENSMUST00000169129.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr14_+_79753055_79753148	0.770418	Msx2_Hoxd4	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr2_-_84255602_84255755	0.749406	Msx2_Hoxd4	ENSMUST00000074262.9|Calcrl|ENSMUSG00000059588.14|calcitonin receptor-like
mm39_v1_chr7_-_45570674_45570764	0.747437	Msx2_Hoxd4	ENSMUST00000210939.2|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr9_-_107648144_107648206	0.726057	Msx2_Hoxd4	ENSMUST00000183248.3|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182022.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000035199.13|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182659.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5
mm39_v1_chr6_-_129449739_129449755	0.71627	Msx2_Hoxd4	ENSMUST00000112076.9|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a	ENSMUST00000184581.3|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a
mm39_v1_chr2_-_163259012_163259017	0.714995	Msx2_Hoxd4	ENSMUST00000127038.2|Oser1|ENSMUSG00000035399.13|oxidative stress responsive serine rich 1
mm39_v1_chrX_+_158086253_158086277	0.711265	Msx2_Hoxd4	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr6_+_136495784_136495808	0.694672	Msx2_Hoxd4	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr18_+_7905440_7905475	0.671261	Msx2_Hoxd4	ENSMUST00000170854.2|Wac|ENSMUSG00000024283.16|WW domain containing adaptor with coiled-coil
mm39_v1_chr2_-_45002902_45003021	0.663213	Msx2_Hoxd4	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr6_+_83142902_83142986	0.642247	Msx2_Hoxd4	ENSMUST00000077407.12|Dctn1|ENSMUSG00000031865.17|dynactin 1	ENSMUST00000113913.8|Dctn1|ENSMUSG00000031865.17|dynactin 1	ENSMUST00000130212.8|Dctn1|ENSMUSG00000031865.17|dynactin 1
mm39_v1_chr1_-_80255156_80255168	0.623046	Msx2_Hoxd4	ENSMUST00000168372.2|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr2_-_73284262_73284323	0.583627	Msx2_Hoxd4	ENSMUST00000102679.8|Wipf1|ENSMUSG00000075284.11|WAS/WASL interacting protein family, member 1
mm39_v1_chr1_+_128079543_128079572	0.580485	Msx2_Hoxd4	ENSMUST00000189317.3|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1
mm39_v1_chr11_+_98689479_98689490	0.577364	Msx2_Hoxd4	ENSMUST00000037930.13|Msl1|ENSMUSG00000052915.15|male specific lethal 1
mm39_v1_chr5_+_65505657_65505689	0.574963	Msx2_Hoxd4	ENSMUST00000031096.11|Klb|ENSMUSG00000029195.11|klotho beta
mm39_v1_chr13_-_100753419_100753490	0.571215	Msx2_Hoxd4	ENSMUST00000168772.2|Marveld2|ENSMUSG00000021636.16|MARVEL (membrane-associating) domain containing 2	ENSMUST00000163163.9|Marveld2|ENSMUSG00000021636.16|MARVEL (membrane-associating) domain containing 2	ENSMUST00000022137.14|Marveld2|ENSMUSG00000021636.16|MARVEL (membrane-associating) domain containing 2
mm39_v1_chr9_-_56151334_56151382	0.55975	Msx2_Hoxd4	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr6_+_29361408_29361460	0.549478	Msx2_Hoxd4	ENSMUST00000156163.2|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr17_+_71923210_71923254	0.527827	Msx2_Hoxd4	ENSMUST00000047086.10|Wdr43|ENSMUSG00000041057.11|WD repeat domain 43
mm39_v1_chr4_+_3940747_3940854	0.503601	Msx2_Hoxd4	ENSMUST00000119403.2|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7
mm39_v1_chr2_+_85809620_85809620	0.497995	Msx2_Hoxd4	ENSMUST00000056849.3|Olfr1030|ENSMUSG00000044923.5|olfactory receptor 1030
mm39_v1_chr2_-_59955995_59956119	0.490894	Msx2_Hoxd4	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr3_+_40755211_40755224	0.49008	Msx2_Hoxd4	ENSMUST00000204473.2|Plk4|ENSMUSG00000025758.11|polo like kinase 4
mm39_v1_chr10_+_5543769_5543809	0.478287	Msx2_Hoxd4	ENSMUST00000051809.10|Myct1|ENSMUSG00000046916.10|myc target 1
mm39_v1_chr6_+_34722887_34722916	0.437239	Msx2_Hoxd4	ENSMUST00000123823.8|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000136907.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr3_+_84859453_84859493	0.431302	Msx2_Hoxd4	ENSMUST00000029727.8|Fbxw7|ENSMUSG00000028086.16|F-box and WD-40 domain protein 7
mm39_v1_chr9_-_106666329_106666408	0.425831	Msx2_Hoxd4	ENSMUST00000046502.7|Rad54l2|ENSMUSG00000040661.7|RAD54 like 2 (S. cerevisiae)
mm39_v1_chr5_-_72325482_72325542	0.420022	Msx2_Hoxd4	ENSMUST00000196241.2|Commd8|ENSMUSG00000029213.12|COMM domain containing 8	ENSMUST00000013693.11|Commd8|ENSMUSG00000029213.12|COMM domain containing 8
mm39_v1_chr11_-_74615496_74615530	0.416019	Msx2_Hoxd4	ENSMUST00000021091.15|Pafah1b1|ENSMUSG00000020745.16|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm39_v1_chr17_-_37523969_37524009	0.390144	Msx2_Hoxd4	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr6_+_136495818_136495850	0.379325	Msx2_Hoxd4	ENSMUST00000186577.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr13_+_51562675_51562834	0.373502	Msx2_Hoxd4	ENSMUST00000087978.5|S1pr3|ENSMUSG00000067586.5|sphingosine-1-phosphate receptor 3
mm39_v1_chr6_-_69584812_69584840	0.366498	Msx2_Hoxd4	ENSMUST00000103359.3|Igkv4-55|ENSMUSG00000096833.3|immunoglobulin kappa variable 4-55
mm39_v1_chr10_+_128139191_128139221	0.365757	Msx2_Hoxd4	ENSMUST00000005825.8|Pan2|ENSMUSG00000005682.10|PAN2 poly(A) specific ribonuclease subunit
mm39_v1_chr3_+_32490300_32490300	0.365554	Msx2_Hoxd4	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr5_-_108022900_108022973	0.364505	Msx2_Hoxd4	ENSMUST00000138111.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000112642.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr7_-_84328553_84328609	0.359449	Msx2_Hoxd4	ENSMUST00000069537.3|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000207865.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000178385.9|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000208782.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6
mm39_v1_chr19_-_24178000_24178016	0.341996	Msx2_Hoxd4	ENSMUST00000233658.3|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr13_-_76091931_76092069	0.336678	Msx2_Hoxd4	ENSMUST00000022078.12|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3	ENSMUST00000109606.3|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3
mm39_v1_chr18_+_23885390_23885458	0.335276	Msx2_Hoxd4	ENSMUST00000170802.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000155708.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000118826.9|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2
mm39_v1_chr14_-_86986541_86986569	0.32817	Msx2_Hoxd4	ENSMUST00000226254.2|Diaph3|ENSMUSG00000022021.15|diaphanous related formin 3
mm39_v1_chr6_+_34722926_34722942	0.325193	Msx2_Hoxd4	ENSMUST00000126181.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr15_+_41694317_41694397	0.312557	Msx2_Hoxd4	ENSMUST00000166917.3|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230127.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230131.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1
mm39_v1_chr13_-_100753181_100753219	0.307879	Msx2_Hoxd4	ENSMUST00000225754.2|Marveld2|ENSMUSG00000021636.16|MARVEL (membrane-associating) domain containing 2
mm39_v1_chr1_+_179788675_179788675	0.303244	Msx2_Hoxd4	ENSMUST00000076687.12|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000097450.10|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000212756.2|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr1_+_179936757_179936830	0.297397	Msx2_Hoxd4	ENSMUST00000143176.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000135056.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr6_+_34723304_34723325	0.291986	Msx2_Hoxd4	ENSMUST00000142716.3|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr3_-_126918491_126918535	0.278495	Msx2_Hoxd4	ENSMUST00000238781.2|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr18_-_33346885_33346917	0.277721	Msx2_Hoxd4	ENSMUST00000025236.9|Stard4|ENSMUSG00000024378.10|StAR-related lipid transfer (START) domain containing 4
mm39_v1_chr13_+_49761506_49761539	0.277267	Msx2_Hoxd4	ENSMUST00000021822.7|Ogn|ENSMUSG00000021390.7|osteoglycin
mm39_v1_chr4_+_109092610_109092610	0.274832	Msx2_Hoxd4	ENSMUST00000106628.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr3_+_132335575_132335592	0.274012	Msx2_Hoxd4	ENSMUST00000212804.2|Gimd1|ENSMUSG00000091721.5|GIMAP family P-loop NTPase domain containing 1	ENSMUST00000212852.2|Gimd1|ENSMUSG00000091721.5|GIMAP family P-loop NTPase domain containing 1
mm39_v1_chr8_+_107757847_107757862	0.266686	Msx2_Hoxd4	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr10_+_127257077_127257104	0.257558	Msx2_Hoxd4	ENSMUST00000168780.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr5_-_123127346_123127401	0.255827	Msx2_Hoxd4	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr2_-_45000389_45000766	0.254153	Msx2_Hoxd4	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_+_87404246_87404247	0.253909	Msx2_Hoxd4	ENSMUST00000213315.2|Olfr1129|ENSMUSG00000062272.5|olfactory receptor 1129	ENSMUST00000214773.2|Olfr1129|ENSMUSG00000062272.5|olfactory receptor 1129
mm39_v1_chr14_+_27598021_27598061	0.252646	Msx2_Hoxd4	ENSMUST00000211684.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000210924.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2
mm39_v1_chr12_-_113733922_113733922	0.251527	Msx2_Hoxd4	ENSMUST00000180013.3|Ighv2-9-1|ENSMUSG00000095565.3|immunoglobulin heavy variable 2-9-1
mm39_v1_chr6_+_29853745_29853789	0.24989	Msx2_Hoxd4	ENSMUST00000064872.13|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2	ENSMUST00000152581.8|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2	ENSMUST00000176265.8|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2	ENSMUST00000154079.8|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr10_-_129107354_129107354	0.249106	Msx2_Hoxd4	ENSMUST00000204573.3|Olfr777|ENSMUSG00000062914.4|olfactory receptor 777
mm39_v1_chr10_+_127256736_127256786	0.24751	Msx2_Hoxd4	ENSMUST00000064793.13|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr18_+_44237577_44237613	0.245198	Msx2_Hoxd4	ENSMUST00000239465.2|Spink12|ENSMUSG00000061144.7|serine peptidase inhibitor, Kazal type 12
mm39_v1_chr13_+_19398273_19398273	0.244372	Msx2_Hoxd4	ENSMUST00000103558.3|Trgc1|ENSMUSG00000076749.3|T cell receptor gamma, constant 1
mm39_v1_chr6_+_15196950_15197041	0.241877	Msx2_Hoxd4	ENSMUST00000140557.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000131414.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000115469.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr10_+_127256993_127257073	0.239714	Msx2_Hoxd4	ENSMUST00000170336.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr3_+_7494108_7494122	0.234155	Msx2_Hoxd4	ENSMUST00000193330.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chr18_-_33346819_33346836	0.233565	Msx2_Hoxd4	ENSMUST00000119991.8|Stard4|ENSMUSG00000024378.10|StAR-related lipid transfer (START) domain containing 4	ENSMUST00000118990.2|Stard4|ENSMUSG00000024378.10|StAR-related lipid transfer (START) domain containing 4
mm39_v1_chr7_+_122723365_122723446	0.232306	Msx2_Hoxd4	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr6_+_149226891_149226956	0.22449	Msx2_Hoxd4	ENSMUST00000189837.2|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1
mm39_v1_chr9_+_38788422_38788422	0.223867	Msx2_Hoxd4	ENSMUST00000078289.3|Olfr926|ENSMUSG00000064333.3|olfactory receptor 926
mm39_v1_chr8_-_26609153_26609260	0.21592	Msx2_Hoxd4	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr1_+_157353696_157353724	0.184749	Msx2_Hoxd4	ENSMUST00000111700.8|Sec16b|ENSMUSG00000026589.15|SEC16 homolog B (S. cerevisiae)
mm39_v1_chr14_-_52273600_52273600	0.182847	Msx2_Hoxd4	ENSMUST00000214342.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr8_+_31601837_31601919	0.179245	Msx2_Hoxd4	ENSMUST00000046941.8|Rnf122|ENSMUSG00000039328.12|ring finger protein 122	ENSMUST00000217278.2|Rnf122|ENSMUSG00000039328.12|ring finger protein 122
mm39_v1_chr4_+_101365144_101365229	0.175125	Msx2_Hoxd4	ENSMUST00000149047.8|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6	ENSMUST00000106929.10|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr19_+_31846154_31846187	0.161274	Msx2_Hoxd4	ENSMUST00000224564.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224304.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000075838.8|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224400.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor
mm39_v1_chr10_-_63039709_63039735	0.160168	Msx2_Hoxd4	ENSMUST00000095580.3|Mypn|ENSMUSG00000020067.9|myopalladin
mm39_v1_chr9_+_74959259_74959419	0.159281	Msx2_Hoxd4	ENSMUST00000170310.2|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000166549.2|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19
mm39_v1_chr4_-_43710231_43710255	0.156214	Msx2_Hoxd4	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr8_-_49296915_49296986	0.15469	Msx2_Hoxd4	ENSMUST00000211812.2|Tenm3|ENSMUSG00000031561.17|teneurin transmembrane protein 3
mm39_v1_chr18_+_44237474_44237548	0.154416	Msx2_Hoxd4	ENSMUST00000081271.7|Spink12|ENSMUSG00000061144.7|serine peptidase inhibitor, Kazal type 12
mm39_v1_chr17_-_29226700_29226804	0.154349	Msx2_Hoxd4	ENSMUST00000233441.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr5_-_102217770_102217807	0.151809	Msx2_Hoxd4	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr6_-_30936013_30936013	0.151751	Msx2_Hoxd4	ENSMUST00000101589.5|Klf14|ENSMUSG00000073209.5|Kruppel-like factor 14
mm39_v1_chr10_-_23977810_23977810	0.148465	Msx2_Hoxd4	ENSMUST00000170267.3|Taar8c|ENSMUSG00000100004.2|trace amine-associated receptor 8C
mm39_v1_chr2_-_88519531_88519531	0.145166	Msx2_Hoxd4	ENSMUST00000213545.2|Olfr1195|ENSMUSG00000075121.3|olfactory receptor 1195
mm39_v1_chr14_+_8283087_8283087	0.14472	Msx2_Hoxd4	ENSMUST00000206298.3|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720	ENSMUST00000216079.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr19_-_55229668_55229668	0.140918	Msx2_Hoxd4	ENSMUST00000069183.8|Gucy2g|ENSMUSG00000055523.8|guanylate cyclase 2g
mm39_v1_chr19_-_47680528_47680535	0.132482	Msx2_Hoxd4	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr4_+_101365052_101365068	0.128869	Msx2_Hoxd4	ENSMUST00000038207.12|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr2_+_36342599_36342599	0.125579	Msx2_Hoxd4	ENSMUST00000072854.2|Olfr340|ENSMUSG00000094266.2|olfactory receptor 340
mm39_v1_chr6_+_83985684_83985749	0.125357	Msx2_Hoxd4	ENSMUST00000203803.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000204591.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000113823.8|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000153860.4|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr1_-_156766351_156766379	0.125128	Msx2_Hoxd4	ENSMUST00000189648.2|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr4_+_109092459_109092459	0.125122	Msx2_Hoxd4	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr1_-_155293141_155293179	0.123063	Msx2_Hoxd4	ENSMUST00000111775.8|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1	ENSMUST00000111774.2|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1
mm39_v1_chr11_+_76795346_76795395	0.1205	Msx2_Hoxd4	ENSMUST00000072633.4|Tmigd1|ENSMUSG00000020839.17|transmembrane and immunoglobulin domain containing 1
mm39_v1_chr13_+_21546990_21547054	0.113713	Msx2_Hoxd4	ENSMUST00000225545.2|Zscan12|ENSMUSG00000036721.15|zinc finger and SCAN domain containing 12	ENSMUST00000053293.14|Zscan12|ENSMUSG00000036721.15|zinc finger and SCAN domain containing 12
mm39_v1_chr6_+_57180275_57180275	0.11282	Msx2_Hoxd4	ENSMUST00000226892.2|Vmn1r13|ENSMUSG00000064259.3|vomeronasal 1 receptor 13	ENSMUST00000227421.2|Vmn1r13|ENSMUSG00000064259.3|vomeronasal 1 receptor 13
mm39_v1_chr2_+_83554741_83554763	0.111582	Msx2_Hoxd4	ENSMUST00000028499.11|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr18_+_37453427_37453470	0.107501	Msx2_Hoxd4	ENSMUST00000078271.4|Pcdhb5|ENSMUSG00000063687.4|protocadherin beta 5
mm39_v1_chr5_+_107655487_107655487	0.102587	Msx2_Hoxd4	ENSMUST00000143074.2|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr11_-_73742280_73742280	0.0999667	Msx2_Hoxd4	ENSMUST00000213365.2|Olfr393|ENSMUSG00000094488.3|olfactory receptor 393
mm39_v1_chr1_+_179788037_179788150	0.0958707	Msx2_Hoxd4	ENSMUST00000097453.9|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000111117.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr1_-_156766381_156766423	0.0958424	Msx2_Hoxd4	ENSMUST00000188656.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr6_-_129600798_129600809	0.0954896	Msx2_Hoxd4	ENSMUST00000095412.10|Klrk1|ENSMUSG00000030149.16|killer cell lectin-like receptor subfamily K, member 1
mm39_v1_chr12_-_113896002_113896052	0.0907462	Msx2_Hoxd4	ENSMUST00000103463.3|Ighv14-1|ENSMUSG00000094509.2|immunoglobulin heavy variable 14-1
mm39_v1_chr11_-_99265721_99265735	0.0897796	Msx2_Hoxd4	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr10_+_23952398_23952398	0.0877477	Msx2_Hoxd4	ENSMUST00000051133.6|Taar8a|ENSMUSG00000096442.2|trace amine-associated receptor 8A
mm39_v1_chr16_-_59092995_59092995	0.0851163	Msx2_Hoxd4	ENSMUST00000216834.2|Olfr201|ENSMUSG00000074995.3|olfactory receptor 201
mm39_v1_chr3_-_144275897_144275989	0.085101	Msx2_Hoxd4	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr1_+_174192688_174192688	0.0841891	Msx2_Hoxd4	ENSMUST00000217962.2|Olfr417|ENSMUSG00000066672.3|olfactory receptor 417	ENSMUST00000220394.2|Olfr417|ENSMUSG00000066672.3|olfactory receptor 417
mm39_v1_chr4_+_13784749_13784791	0.0816316	Msx2_Hoxd4	ENSMUST00000098256.4|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
mm39_v1_chr8_-_3675274_3675288	0.0799404	Msx2_Hoxd4	ENSMUST00000004749.7|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr9_+_77959206_77959231	0.0790991	Msx2_Hoxd4	ENSMUST00000024104.9|Gcm1|ENSMUSG00000023333.9|glial cells missing homolog 1
mm39_v1_chr14_-_36641270_36641311	0.0700571	Msx2_Hoxd4	ENSMUST00000182797.8|Ccser2|ENSMUSG00000058690.15|coiled-coil serine rich 2
mm39_v1_chr6_-_129600812_129600833	0.0697117	Msx2_Hoxd4	ENSMUST00000168919.8|Klrk1|ENSMUSG00000030149.16|killer cell lectin-like receptor subfamily K, member 1
mm39_v1_chr7_+_107679062_107679062	0.0646462	Msx2_Hoxd4	ENSMUST00000213601.2|Olfr481|ENSMUSG00000054236.7|olfactory receptor 481
mm39_v1_chr2_+_83554868_83554899	0.0625077	Msx2_Hoxd4	ENSMUST00000111740.9|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr4_-_3872105_3872105	0.0584893	Msx2_Hoxd4	ENSMUST00000105158.2|Mos|ENSMUSG00000078365.6|Moloney sarcoma oncogene
mm39_v1_chr4_-_82768958_82769051	0.0562346	Msx2_Hoxd4	ENSMUST00000139401.2|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21
mm39_v1_chr14_+_53599724_53599724	0.0535857	Msx2_Hoxd4	ENSMUST00000196105.2|Trav13n-4|ENSMUSG00000076823.4|T cell receptor alpha variable 13N-4
mm39_v1_chr3_+_67799510_67799565	0.0502168	Msx2_Hoxd4	ENSMUST00000063263.5|Iqcj|ENSMUSG00000051777.7|IQ motif containing J	ENSMUST00000182006.4|Iqschfp|ENSMUSG00000102422.2|Iqcj and Schip1 fusion protein
mm39_v1_chr14_+_8282925_8282925	0.0461516	Msx2_Hoxd4	ENSMUST00000217642.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr15_-_101422054_101422054	0.0440559	Msx2_Hoxd4	ENSMUST00000230067.3|Gm49425|ENSMUSG00000116336.3|predicted gene, 49425
mm39_v1_chr17_-_90395771_90395828	0.0427295	Msx2_Hoxd4	ENSMUST00000197268.5|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000173917.8|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr5_-_121641461_121641503	0.0427285	Msx2_Hoxd4	ENSMUST00000079368.5|Adam1b|ENSMUSG00000062438.5|a disintegrin and metallopeptidase domain 1b
mm39_v1_chr10_+_89906956_89906982	0.0386668	Msx2_Hoxd4	ENSMUST00000183109.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr17_-_21006419_21006419	0.0372657	Msx2_Hoxd4	ENSMUST00000233605.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228	ENSMUST00000232812.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228	ENSMUST00000233186.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228	ENSMUST00000233164.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228
mm39_v1_chr6_-_13871475_13871517	0.0367125	Msx2_Hoxd4	ENSMUST00000139231.2|2610001J05Rik|ENSMUSG00000052419.8|RIKEN cDNA 2610001J05 gene
mm39_v1_chr13_+_49697919_49698009	0.0334825	Msx2_Hoxd4	ENSMUST00000177948.2|Aspn|ENSMUSG00000021388.15|asporin	ENSMUST00000021820.14|Aspn|ENSMUSG00000021388.15|asporin
mm39_v1_chr14_-_4506874_4506894	0.0334012	Msx2_Hoxd4	ENSMUST00000224934.2|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr1_+_106866678_106866693	0.0276629	Msx2_Hoxd4	ENSMUST00000112724.3|Serpinb12|ENSMUSG00000059956.15|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
mm39_v1_chr10_+_115405891_115405927	0.0206969	Msx2_Hoxd4	ENSMUST00000173620.2|A930009A15Rik|ENSMUSG00000092210.2|RIKEN cDNA A930009A15 gene
mm39_v1_chr2_+_109522781_109522889	0.0196415	Msx2_Hoxd4	ENSMUST00000111050.10|Bdnf|ENSMUSG00000048482.15|brain derived neurotrophic factor
mm39_v1_chr15_+_79999643_79999689	0.0194916	Msx2_Hoxd4	ENSMUST00000135727.2|Syngr1|ENSMUSG00000022415.13|synaptogyrin 1
mm39_v1_chr1_-_54233207_54233207	0.0177578	Msx2_Hoxd4	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr2_+_20742115_20742152	0.0133209	Msx2_Hoxd4	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr19_+_26727111_26727277	0.00988185	Msx2_Hoxd4	ENSMUST00000175842.4|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr10_+_129601351_129601351	0.00949977	Msx2_Hoxd4	ENSMUST00000203236.3|Olfr808|ENSMUSG00000049894.4|olfactory receptor 808
mm39_v1_chr4_+_80752535_80752550	0.00796822	Msx2_Hoxd4	ENSMUST00000102831.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr7_-_10011933_10011933	0.00765015	Msx2_Hoxd4	ENSMUST00000227719.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228622.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228086.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66
mm39_v1_chr2_+_14828903_14828930	0.00290378	Msx2_Hoxd4	ENSMUST00000193800.6|Cacnb2|ENSMUSG00000057914.16|calcium channel, voltage-dependent, beta 2 subunit
mm39_v1_chr14_+_50360643_50360643	0.00246568	Msx2_Hoxd4	ENSMUST00000215317.2|Olfr727|ENSMUSG00000059488.4|olfactory receptor 727
mm39_v1_chr14_-_50586329_50586329	0.00238909	Msx2_Hoxd4	ENSMUST00000216634.2|Olfr735|ENSMUSG00000046210.8|olfactory receptor 735
mm39_v1_chr3_+_106020545_106020706	4.12348e-05	Msx2_Hoxd4	ENSMUST00000079132.12|Chia1|ENSMUSG00000062778.13|chitinase, acidic 1	ENSMUST00000139086.2|Chia1|ENSMUSG00000062778.13|chitinase, acidic 1
mm39_v1_chr3_+_14545751_14545833	2.1721e-05	Msx2_Hoxd4	ENSMUST00000037321.8|Slc7a12|ENSMUSG00000039710.15|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	ENSMUST00000120484.8|Slc7a12|ENSMUSG00000039710.15|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	ENSMUST00000120801.2|Slc7a12|ENSMUSG00000039710.15|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
