mm39_v1_chr11_+_117688486_117688574	14.3759	Six3_Six1_Six2	ENSMUST00000106331.2|6030468B19Rik|ENSMUSG00000025573.5|RIKEN cDNA 6030468B19 gene
mm39_v1_chr9_+_110856425_110856440	5.18628	Six3_Six1_Six2	ENSMUST00000199313.2|Ltf|ENSMUSG00000032496.8|lactotransferrin
mm39_v1_chr3_-_37778470_37778639	3.50444	Six3_Six1_Six2	ENSMUST00000108105.2|Gm5148|ENSMUSG00000058174.8|predicted gene 5148	ENSMUST00000079755.5|Gm5148|ENSMUSG00000058174.8|predicted gene 5148	ENSMUST00000099128.2|Gm5148|ENSMUSG00000058174.8|predicted gene 5148
mm39_v1_chr17_+_41121979_41122056	3.07919	Six3_Six1_Six2	ENSMUST00000024721.8|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein	ENSMUST00000233740.2|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein
mm39_v1_chr7_+_89814713_89814756	2.54435	Six3_Six1_Six2	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chrX_-_141749704_141749730	2.45655	Six3_Six1_Six2	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr6_+_123099615_123099691	2.41091	Six3_Six1_Six2	ENSMUST00000161636.8|Clec4a2|ENSMUSG00000030148.16|C-type lectin domain family 4, member a2	ENSMUST00000161365.8|Clec4a2|ENSMUSG00000030148.16|C-type lectin domain family 4, member a2
mm39_v1_chr14_+_56003406_56003457	2.34013	Six3_Six1_Six2	ENSMUST00000057569.4|Ltb4r1|ENSMUSG00000046908.6|leukotriene B4 receptor 1
mm39_v1_chr17_+_35460722_35460846	2.20453	Six3_Six1_Six2	ENSMUST00000068056.12|Ddx39b|ENSMUSG00000019432.16|DEAD box helicase 39b	ENSMUST00000174757.8|Ddx39b|ENSMUSG00000019432.16|DEAD box helicase 39b	ENSMUST00000173731.8|Ddx39b|ENSMUSG00000019432.16|DEAD box helicase 39b
mm39_v1_chr6_+_123100382_123100443	1.78257	Six3_Six1_Six2	ENSMUST00000032248.8|Clec4a2|ENSMUSG00000030148.16|C-type lectin domain family 4, member a2
mm39_v1_chr6_+_123100272_123100301	1.70272	Six3_Six1_Six2	ENSMUST00000041779.13|Clec4a2|ENSMUSG00000030148.16|C-type lectin domain family 4, member a2
mm39_v1_chr1_+_139382485_139382608	1.69962	Six3_Six1_Six2	ENSMUST00000200083.5|Aspm|ENSMUSG00000033952.15|abnormal spindle microtubule assembly	ENSMUST00000053364.12|Aspm|ENSMUSG00000033952.15|abnormal spindle microtubule assembly
mm39_v1_chr9_+_98305014_98305014	1.52779	Six3_Six1_Six2	ENSMUST00000052068.11|Rbp1|ENSMUSG00000046402.11|retinol binding protein 1, cellular
mm39_v1_chr15_-_82128888_82128956	1.40978	Six3_Six1_Six2	ENSMUST00000089155.6|Cenpm|ENSMUSG00000068101.12|centromere protein M	ENSMUST00000089157.11|Cenpm|ENSMUSG00000068101.12|centromere protein M
mm39_v1_chr15_-_103218876_103219039	1.21748	Six3_Six1_Six2	ENSMUST00000079824.6|Gpr84|ENSMUSG00000063234.6|G protein-coupled receptor 84
mm39_v1_chrX_-_73416824_73416856	1.21685	Six3_Six1_Six2	ENSMUST00000178691.2|Ubl4a|ENSMUSG00000015290.16|ubiquitin-like 4A	ENSMUST00000114146.8|Slc10a3|ENSMUSG00000032806.14|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm39_v1_chr19_-_38032006_38032049	1.20066	Six3_Six1_Six2	ENSMUST00000172095.3|Myof|ENSMUSG00000048612.17|myoferlin	ENSMUST00000041475.16|Myof|ENSMUSG00000048612.17|myoferlin
mm39_v1_chr3_+_32760447_32760447	1.19235	Six3_Six1_Six2	ENSMUST00000194781.6|Actl6a|ENSMUSG00000027671.15|actin-like 6A
mm39_v1_chrX_-_73416869_73416955	1.10736	Six3_Six1_Six2	ENSMUST00000073067.11|Slc10a3|ENSMUSG00000032806.14|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	ENSMUST00000037967.6|Slc10a3|ENSMUSG00000032806.14|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm39_v1_chr1_+_136395673_136395696	1.0551	Six3_Six1_Six2	ENSMUST00000189413.7|Kif14|ENSMUSG00000041498.14|kinesin family member 14	ENSMUST00000047817.12|Kif14|ENSMUSG00000041498.14|kinesin family member 14
mm39_v1_chr10_-_81463631_81463631	1.04606	Six3_Six1_Six2	ENSMUST00000042923.9|Sirt6|ENSMUSG00000034748.17|sirtuin 6
mm39_v1_chr8_+_95720864_95720929	1.04445	Six3_Six1_Six2	ENSMUST00000212141.2|Adgrg1|ENSMUSG00000031785.17|adhesion G protein-coupled receptor G1
mm39_v1_chr2_+_127178072_127178086	0.975116	Six3_Six1_Six2	ENSMUST00000028846.7|Dusp2|ENSMUSG00000027368.7|dual specificity phosphatase 2
mm39_v1_chr7_-_79765042_79765140	0.945565	Six3_Six1_Six2	ENSMUST00000206714.2|Idh2|ENSMUSG00000030541.17|isocitrate dehydrogenase 2 (NADP+), mitochondrial	ENSMUST00000107384.10|Idh2|ENSMUSG00000030541.17|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm39_v1_chr7_-_100504610_100504648	0.92253	Six3_Six1_Six2	ENSMUST00000156855.8|Relt|ENSMUSG00000008318.11|RELT tumor necrosis factor receptor
mm39_v1_chr2_-_88534814_88534941	0.873664	Six3_Six1_Six2	ENSMUST00000216928.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196	ENSMUST00000216977.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196
mm39_v1_chr12_-_114252202_114252263	0.868074	Six3_Six1_Six2	ENSMUST00000195124.6|Ighv3-6|ENSMUSG00000076672.8|immunoglobulin heavy variable 3-6	ENSMUST00000103481.3|Ighv3-6|ENSMUSG00000076672.8|immunoglobulin heavy variable 3-6
mm39_v1_chr19_-_38031774_38031866	0.841171	Six3_Six1_Six2	ENSMUST00000226068.2|Myof|ENSMUSG00000048612.17|myoferlin
mm39_v1_chr2_+_31135813_31135913	0.699816	Six3_Six1_Six2	ENSMUST00000000199.8|Ncs1|ENSMUSG00000062661.7|neuronal calcium sensor 1
mm39_v1_chr13_+_104365880_104365896	0.665096	Six3_Six1_Six2	ENSMUST00000022227.8|Cenpk|ENSMUSG00000021714.16|centromere protein K
mm39_v1_chr5_+_140593075_140593107	0.658391	Six3_Six1_Six2	ENSMUST00000031555.3|Lfng|ENSMUSG00000029570.6|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm39_v1_chr7_+_79048884_79048893	0.618684	Six3_Six1_Six2	ENSMUST00000137667.3|Fanci|ENSMUSG00000039187.17|Fanconi anemia, complementation group I
mm39_v1_chr15_+_101152078_101152211	0.563526	Six3_Six1_Six2	ENSMUST00000228985.2|Nr4a1|ENSMUSG00000023034.8|nuclear receptor subfamily 4, group A, member 1
mm39_v1_chr17_-_53846438_53846487	0.554214	Six3_Six1_Six2	ENSMUST00000056198.4|Pp2d1|ENSMUSG00000044957.4|protein phosphatase 2C-like domain containing 1
mm39_v1_chr8_+_57908920_57908957	0.535625	Six3_Six1_Six2	ENSMUST00000034023.4|Scrg1|ENSMUSG00000031610.4|scrapie responsive gene 1
mm39_v1_chr17_+_36176485_36176735	0.518919	Six3_Six1_Six2	ENSMUST00000127442.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18	ENSMUST00000144382.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18
mm39_v1_chr5_+_21748523_21748587	0.513288	Six3_Six1_Six2	ENSMUST00000035651.6|Lrrc17|ENSMUSG00000039883.6|leucine rich repeat containing 17
mm39_v1_chr15_+_82136598_82136676	0.510382	Six3_Six1_Six2	ENSMUST00000136948.3|1500009C09Rik|ENSMUSG00000068099.6|RIKEN cDNA 1500009C09 gene
mm39_v1_chr12_-_113589576_113589657	0.48845	Six3_Six1_Six2	ENSMUST00000103446.2|Ighv5-6|ENSMUSG00000094951.2|immunoglobulin heavy variable 5-6
mm39_v1_chrX_+_168468186_168468246	0.480759	Six3_Six1_Six2	ENSMUST00000112107.8|Mid1|ENSMUSG00000035299.17|midline 1	ENSMUST00000112104.8|Mid1|ENSMUSG00000035299.17|midline 1
mm39_v1_chr6_-_119925387_119925507	0.476627	Six3_Six1_Six2	ENSMUST00000162541.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr2_-_13276074_13276159	0.459394	Six3_Six1_Six2	ENSMUST00000137670.3|Rsu1|ENSMUSG00000026727.11|Ras suppressor protein 1	ENSMUST00000114791.9|Rsu1|ENSMUSG00000026727.11|Ras suppressor protein 1
mm39_v1_chr2_-_13276205_13276247	0.45149	Six3_Six1_Six2	ENSMUST00000191959.6|Rsu1|ENSMUSG00000026727.11|Ras suppressor protein 1	ENSMUST00000028059.9|Rsu1|ENSMUSG00000026727.11|Ras suppressor protein 1
mm39_v1_chr8_-_4325886_4325915	0.436149	Six3_Six1_Six2	ENSMUST00000003029.14|Timm44|ENSMUSG00000002949.16|translocase of inner mitochondrial membrane 44
mm39_v1_chr2_+_106523532_106523624	0.414273	Six3_Six1_Six2	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr6_-_120893771_120893829	0.40519	Six3_Six1_Six2	ENSMUST00000004560.12|Bid|ENSMUSG00000004446.13|BH3 interacting domain death agonist
mm39_v1_chr19_+_46329552_46329566	0.389461	Six3_Six1_Six2	ENSMUST00000128041.8|Mfsd13a|ENSMUSG00000025227.15|major facilitator superfamily domain containing 13a
mm39_v1_chr2_-_118859821_118859883	0.38278	Six3_Six1_Six2	ENSMUST00000110833.2|Ccdc32|ENSMUSG00000039983.14|coiled-coil domain containing 32	ENSMUST00000036470.14|Ccdc32|ENSMUSG00000039983.14|coiled-coil domain containing 32	ENSMUST00000110834.8|Ccdc32|ENSMUSG00000039983.14|coiled-coil domain containing 32
mm39_v1_chr8_+_70285282_70285362	0.38125	Six3_Six1_Six2	ENSMUST00000131637.9|Pbx4|ENSMUSG00000031860.18|pre B cell leukemia homeobox 4
mm39_v1_chr7_-_101552989_101552995	0.372775	Six3_Six1_Six2	ENSMUST00000106969.9|Tomt|ENSMUSG00000078630.9|transmembrane O-methyltransferase
mm39_v1_chr7_-_104991477_104991477	0.3709	Six3_Six1_Six2	ENSMUST00000213290.2|Olfr691|ENSMUSG00000043948.3|olfactory receptor 691
mm39_v1_chr11_-_99121822_99121844	0.343788	Six3_Six1_Six2	ENSMUST00000103133.4|Smarce1|ENSMUSG00000037935.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm39_v1_chr8_+_85558151_85558151	0.338367	Six3_Six1_Six2	ENSMUST00000036734.6|Gadd45gip1|ENSMUSG00000033751.6|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm39_v1_chr2_+_117080212_117080235	0.336715	Six3_Six1_Six2	ENSMUST00000028825.5|Fam98b|ENSMUSG00000027349.6|family with sequence similarity 98, member B
mm39_v1_chr4_+_132903646_132903682	0.311298	Six3_Six1_Six2	ENSMUST00000105912.2|Wasf2|ENSMUSG00000028868.14|WASP family, member 2
mm39_v1_chr4_+_11758147_11758220	0.302653	Six3_Six1_Six2	ENSMUST00000029871.12|Cdh17|ENSMUSG00000028217.12|cadherin 17	ENSMUST00000108303.2|Cdh17|ENSMUSG00000028217.12|cadherin 17
mm39_v1_chr9_-_119170456_119170486	0.29483	Six3_Six1_Six2	ENSMUST00000139870.2|Myd88|ENSMUSG00000032508.9|myeloid differentiation primary response gene 88
mm39_v1_chr2_+_86128161_86128161	0.260579	Six3_Six1_Six2	ENSMUST00000054746.5|Olfr1052|ENSMUSG00000047149.6|olfactory receptor 1052
mm39_v1_chr17_-_35978438_35978490	0.258082	Six3_Six1_Six2	ENSMUST00000043674.15|Vars2|ENSMUSG00000038838.16|valyl-tRNA synthetase 2, mitochondrial
mm39_v1_chr8_+_70285133_70285184	0.25128	Six3_Six1_Six2	ENSMUST00000081503.13|Pbx4|ENSMUSG00000031860.18|pre B cell leukemia homeobox 4
mm39_v1_chr7_-_103778992_103779033	0.248679	Six3_Six1_Six2	ENSMUST00000053743.6|Ubqln5|ENSMUSG00000055643.5|ubiquilin 5
mm39_v1_chr19_-_5452521_5452556	0.23746	Six3_Six1_Six2	ENSMUST00000235569.2|Tsga10ip|ENSMUSG00000039330.6|testis specific 10 interacting protein
mm39_v1_chr6_-_69741999_69742006	0.231268	Six3_Six1_Six2	ENSMUST00000103365.3|Igkv12-46|ENSMUSG00000076564.3|immunoglobulin kappa variable 12-46
mm39_v1_chr6_-_57827328_57827328	0.222803	Six3_Six1_Six2	ENSMUST00000203310.3|Vmn1r21|ENSMUSG00000115343.2|vomeronasal 1 receptor 21	ENSMUST00000203488.3|Vmn1r21|ENSMUSG00000115343.2|vomeronasal 1 receptor 21
mm39_v1_chr9_+_106099797_106099828	0.221478	Six3_Six1_Six2	ENSMUST00000062241.11|Tlr9|ENSMUSG00000045322.11|toll-like receptor 9
mm39_v1_chr14_+_58035640_58035675	0.22034	Six3_Six1_Six2	ENSMUST00000111269.2|Sap18|ENSMUSG00000021963.18|Sin3-associated polypeptide 18
mm39_v1_chr9_+_38725910_38725910	0.217964	Six3_Six1_Six2	ENSMUST00000213164.2|Olfr922|ENSMUSG00000043911.6|olfactory receptor 922
mm39_v1_chr1_-_65162267_65162373	0.217927	Six3_Six1_Six2	ENSMUST00000050047.4|D630023F18Rik|ENSMUSG00000044816.11|RIKEN cDNA D630023F18 gene	ENSMUST00000148020.8|D630023F18Rik|ENSMUSG00000044816.11|RIKEN cDNA D630023F18 gene
mm39_v1_chr18_+_37840092_37840154	0.210481	Six3_Six1_Six2	ENSMUST00000195823.2|Pcdhga6|ENSMUSG00000103793.2|protocadherin gamma subfamily A, 6
mm39_v1_chr2_-_89408791_89408791	0.20249	Six3_Six1_Six2	ENSMUST00000217402.2|Olfr1245|ENSMUSG00000111456.2|olfactory receptor 1245
mm39_v1_chr16_-_18052937_18053048	0.185334	Six3_Six1_Six2	ENSMUST00000076957.7|Zdhhc8|ENSMUSG00000060166.7|zinc finger, DHHC domain containing 8
mm39_v1_chr9_+_65048454_65048494	0.184162	Six3_Six1_Six2	ENSMUST00000034961.6|Igdcc3|ENSMUSG00000032394.7|immunoglobulin superfamily, DCC subclass, member 3	ENSMUST00000217371.2|Igdcc3|ENSMUSG00000032394.7|immunoglobulin superfamily, DCC subclass, member 3
mm39_v1_chr10_-_128016135_128016187	0.140891	Six3_Six1_Six2	ENSMUST00000238843.2|Rbms2|ENSMUSG00000040043.18|RNA binding motif, single stranded interacting protein 2	ENSMUST00000099139.9|Rbms2|ENSMUSG00000040043.18|RNA binding motif, single stranded interacting protein 2
mm39_v1_chr8_-_87611849_87611935	0.139764	Six3_Six1_Six2	ENSMUST00000034074.8|N4bp1|ENSMUSG00000031652.12|NEDD4 binding protein 1
mm39_v1_chr11_+_101877876_101877896	0.11256	Six3_Six1_Six2	ENSMUST00000010985.8|Cfap97d1|ENSMUSG00000010841.14|CFAP97 domain containing 1
mm39_v1_chr12_-_75596441_75596468	0.109765	Six3_Six1_Six2	ENSMUST00000218716.2|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon
mm39_v1_chr14_+_51181956_51181974	0.108728	Six3_Six1_Six2	ENSMUST00000178092.2|Pnp|ENSMUSG00000115338.3|purine-nucleoside phosphorylase	ENSMUST00000227052.2|Gm49342|ENSMUSG00000021871.20|predicted gene, 49342
mm39_v1_chr18_+_89224219_89224235	0.092906	Six3_Six1_Six2	ENSMUST00000236835.2|Cd226|ENSMUSG00000034028.17|CD226 antigen
mm39_v1_chr6_-_57306479_57306479	0.0858207	Six3_Six1_Six2	ENSMUST00000227283.2|Vmn1r16|ENSMUSG00000115792.2|vomeronasal 1 receptor 16	ENSMUST00000228356.2|Vmn1r16|ENSMUSG00000115792.2|vomeronasal 1 receptor 16
mm39_v1_chr14_+_54440591_54440591	0.0735983	Six3_Six1_Six2	ENSMUST00000103725.2|Traj16|ENSMUSG00000076913.2|T cell receptor alpha joining 16
mm39_v1_chr19_+_9824919_9824926	0.0672948	Six3_Six1_Six2	ENSMUST00000179814.3|Scgb2a2|ENSMUSG00000096872.3|secretoglobin, family 2A, member 2
mm39_v1_chr2_+_157870399_157870459	0.0603267	Six3_Six1_Six2	ENSMUST00000103123.10|Rprd1b|ENSMUSG00000027651.17|regulation of nuclear pre-mRNA domain containing 1B
mm39_v1_chr17_+_47221377_47221390	0.0417838	Six3_Six1_Six2	ENSMUST00000024773.6|Prph2|ENSMUSG00000023978.6|peripherin 2
mm39_v1_chr1_+_40305738_40305843	0.0405606	Six3_Six1_Six2	ENSMUST00000114795.3|Il1r1|ENSMUSG00000026072.13|interleukin 1 receptor, type I
mm39_v1_chr7_-_102507962_102507972	0.0349125	Six3_Six1_Six2	ENSMUST00000213481.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566	ENSMUST00000209952.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566
mm39_v1_chr11_+_49379915_49379915	0.0302425	Six3_Six1_Six2	ENSMUST00000214948.2|Olfr1385|ENSMUSG00000059729.3|olfactory receptor 1385
mm39_v1_chr13_+_94219934_94220019	0.0226089	Six3_Six1_Six2	ENSMUST00000156071.2|Lhfpl2|ENSMUSG00000045312.13|lipoma HMGIC fusion partner-like 2
mm39_v1_chr6_-_120893725_120893768	0.0206868	Six3_Six1_Six2	ENSMUST00000145948.2|Bid|ENSMUSG00000004446.13|BH3 interacting domain death agonist
mm39_v1_chr4_-_32950812_32950866	0.0129253	Six3_Six1_Six2	ENSMUST00000084750.8|Ankrd6|ENSMUSG00000040183.14|ankyrin repeat domain 6	ENSMUST00000084748.9|Ankrd6|ENSMUSG00000040183.14|ankyrin repeat domain 6
mm39_v1_chr6_+_90246088_90246088	0.0119679	Six3_Six1_Six2	ENSMUST00000058039.3|Vmn1r54|ENSMUSG00000047203.4|vomeronasal 1 receptor 54
mm39_v1_chr9_+_38686470_38686470	0.00684242	Six3_Six1_Six2	ENSMUST00000071681.4|Olfr921|ENSMUSG00000049926.6|olfactory receptor 921
mm39_v1_chr12_-_114451189_114451242	0.00619753	Six3_Six1_Six2	ENSMUST00000103493.3|Ighv1-4|ENSMUSG00000095442.2|immunoglobulin heavy variable 1-4
