mm39_v1_chr11_-_5900019_5900081	10.6834	Rfx3_Rfx1_Rfx4	ENSMUST00000102920.4|Gck|ENSMUSG00000041798.16|glucokinase
mm39_v1_chr11_+_101358990_101359001	6.06889	Rfx3_Rfx1_Rfx4	ENSMUST00000001347.7|Rnd2|ENSMUSG00000001313.13|Rho family GTPase 2
mm39_v1_chr5_+_30972067_30972120	4.65356	Rfx3_Rfx1_Rfx4	ENSMUST00000200692.4|Mapre3|ENSMUSG00000029166.15|microtubule-associated protein, RP/EB family, member 3
mm39_v1_chr5_+_30971915_30971985	4.60985	Rfx3_Rfx1_Rfx4	ENSMUST00000031058.15|Mapre3|ENSMUSG00000029166.15|microtubule-associated protein, RP/EB family, member 3
mm39_v1_chr10_-_39901249_39901285	3.98054	Rfx3_Rfx1_Rfx4	ENSMUST00000163705.3|Mfsd4b1|ENSMUSG00000038522.8|major facilitator superfamily domain containing 4B1
mm39_v1_chr7_+_44114815_44114843	3.52003	Rfx3_Rfx1_Rfx4	ENSMUST00000035929.11|Aspdh|ENSMUSG00000038704.13|aspartate dehydrogenase domain containing	ENSMUST00000146128.8|Aspdh|ENSMUSG00000038704.13|aspartate dehydrogenase domain containing
mm39_v1_chr12_+_113104085_113104203	3.43185	Rfx3_Rfx1_Rfx4	ENSMUST00000200380.5|Crip2|ENSMUSG00000006356.11|cysteine rich protein 2
mm39_v1_chr1_-_192946359_192946384	3.38432	Rfx3_Rfx1_Rfx4	ENSMUST00000161737.8|Hsd11b1|ENSMUSG00000016194.15|hydroxysteroid 11-beta dehydrogenase 1
mm39_v1_chr7_+_44114857_44114876	3.26263	Rfx3_Rfx1_Rfx4	ENSMUST00000135624.2|Aspdh|ENSMUSG00000038704.13|aspartate dehydrogenase domain containing
mm39_v1_chr7_-_30754193_30754213	3.22687	Rfx3_Rfx1_Rfx4	ENSMUST00000205778.2|Fxyd1|ENSMUSG00000036570.15|FXYD domain-containing ion transport regulator 1
mm39_v1_chr7_-_30754223_30754239	3.15165	Rfx3_Rfx1_Rfx4	ENSMUST00000206012.2|Fxyd1|ENSMUSG00000036570.15|FXYD domain-containing ion transport regulator 1	ENSMUST00000108110.5|Fxyd1|ENSMUSG00000036570.15|FXYD domain-containing ion transport regulator 1
mm39_v1_chr7_-_30754240_30754264	3.10844	Rfx3_Rfx1_Rfx4	ENSMUST00000206860.2|Fxyd1|ENSMUSG00000036570.15|FXYD domain-containing ion transport regulator 1	ENSMUST00000071697.11|Fxyd1|ENSMUSG00000036570.15|FXYD domain-containing ion transport regulator 1
mm39_v1_chr12_+_113103817_113103878	3.0984	Rfx3_Rfx1_Rfx4	ENSMUST00000084882.9|Crip2|ENSMUSG00000006356.11|cysteine rich protein 2
mm39_v1_chr9_+_118931532_118931613	3.09484	Rfx3_Rfx1_Rfx4	ENSMUST00000165231.8|Dlec1|ENSMUSG00000038060.16|deleted in lung and esophageal cancer 1	ENSMUST00000140326.8|Dlec1|ENSMUSG00000038060.16|deleted in lung and esophageal cancer 1
mm39_v1_chr4_-_43669141_43669200	2.95859	Rfx3_Rfx1_Rfx4	ENSMUST00000056474.7|Fam221b|ENSMUSG00000043633.7|family with sequence similarity 221, member B
mm39_v1_chr9_-_106563002_106563024	2.92779	Rfx3_Rfx1_Rfx4	ENSMUST00000163441.8|Tex264|ENSMUSG00000040813.17|testis expressed gene 264
mm39_v1_chr11_-_105835238_105835345	2.92418	Rfx3_Rfx1_Rfx4	ENSMUST00000019734.11|Cyb561|ENSMUSG00000019590.17|cytochrome b-561	ENSMUST00000184269.3|Cyb561|ENSMUSG00000019590.17|cytochrome b-561	ENSMUST00000150563.3|Cyb561|ENSMUSG00000019590.17|cytochrome b-561
mm39_v1_chr9_-_60595401_60595467	2.91079	Rfx3_Rfx1_Rfx4	ENSMUST00000114034.9|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49	ENSMUST00000065603.12|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49
mm39_v1_chr9_-_106562852_106562881	2.86108	Rfx3_Rfx1_Rfx4	ENSMUST00000169068.8|Tex264|ENSMUSG00000040813.17|testis expressed gene 264
mm39_v1_chr7_-_30754792_30754834	2.83554	Rfx3_Rfx1_Rfx4	ENSMUST00000206328.2|Fxyd1|ENSMUSG00000036570.15|FXYD domain-containing ion transport regulator 1
mm39_v1_chr15_-_85918378_85918413	2.6951	Rfx3_Rfx1_Rfx4	ENSMUST00000016172.10|Celsr1|ENSMUSG00000016028.12|cadherin, EGF LAG seven-pass G-type receptor 1
mm39_v1_chr17_-_34822649_34822676	2.6908	Rfx3_Rfx1_Rfx4	ENSMUST00000015622.8|Rnf5|ENSMUSG00000015478.14|ring finger protein 5
mm39_v1_chr8_-_3517617_3517680	2.668	Rfx3_Rfx1_Rfx4	ENSMUST00000111081.10|Pex11g|ENSMUSG00000069633.13|peroxisomal biogenesis factor 11 gamma	ENSMUST00000004686.13|Pex11g|ENSMUSG00000069633.13|peroxisomal biogenesis factor 11 gamma
mm39_v1_chr9_-_106563091_106563161	2.66503	Rfx3_Rfx1_Rfx4	ENSMUST00000046735.11|Tex264|ENSMUSG00000040813.17|testis expressed gene 264
mm39_v1_chr17_-_47063095_47063157	2.62704	Rfx3_Rfx1_Rfx4	ENSMUST00000121671.2|Cnpy3|ENSMUSG00000023973.14|canopy FGF signaling regulator 3	ENSMUST00000059844.13|Cnpy3|ENSMUSG00000023973.14|canopy FGF signaling regulator 3
mm39_v1_chr3_-_89121686_89121737	2.62439	Rfx3_Rfx1_Rfx4	ENSMUST00000073572.12|Mtx1|ENSMUSG00000064068.16|metaxin 1
mm39_v1_chr9_-_72892617_72892684	2.58241	Rfx3_Rfx1_Rfx4	ENSMUST00000124565.3|Ccpg1os|ENSMUSG00000086158.3|cell cycle progression 1, opposite strand
mm39_v1_chr2_-_90735171_90735284	2.56369	Rfx3_Rfx1_Rfx4	ENSMUST00000005647.4|Ndufs3|ENSMUSG00000005510.10|NADH:ubiquinone oxidoreductase core subunit S3
mm39_v1_chr16_-_3726503_3726554	2.53106	Rfx3_Rfx1_Rfx4	ENSMUST00000115859.8|1700037C18Rik|ENSMUSG00000005983.16|RIKEN cDNA 1700037C18 gene
mm39_v1_chr4_+_124696394_124696471	2.43477	Rfx3_Rfx1_Rfx4	ENSMUST00000175875.2|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr7_-_126522014_126522098	2.42103	Rfx3_Rfx1_Rfx4	ENSMUST00000134134.3|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219	ENSMUST00000119781.8|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219	ENSMUST00000121612.4|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219
mm39_v1_chr9_+_108924457_108924480	2.39993	Rfx3_Rfx1_Rfx4	ENSMUST00000072093.13|Plxnb1|ENSMUSG00000053646.14|plexin B1
mm39_v1_chr3_-_89121637_89121679	2.38907	Rfx3_Rfx1_Rfx4	ENSMUST00000239452.2|Mtx1|ENSMUSG00000064068.16|metaxin 1	ENSMUST00000118964.10|Mtx1|ENSMUSG00000064068.16|metaxin 1
mm39_v1_chr2_-_5719302_5719349	2.3756	Rfx3_Rfx1_Rfx4	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr17_-_56916771_56916819	2.28137	Rfx3_Rfx1_Rfx4	ENSMUST00000052832.6|Micos13|ENSMUSG00000049760.7|mitochondrial contact site and cristae organizing system subunit 13
mm39_v1_chr11_+_108316018_108316130	2.24212	Rfx3_Rfx1_Rfx4	ENSMUST00000150863.9|Cep112|ENSMUSG00000020728.18|centrosomal protein 112	ENSMUST00000061287.12|Cep112|ENSMUSG00000020728.18|centrosomal protein 112	ENSMUST00000149683.9|Cep112|ENSMUSG00000020728.18|centrosomal protein 112
mm39_v1_chr12_+_87193922_87193974	2.14446	Rfx3_Rfx1_Rfx4	ENSMUST00000222885.2|Gstz1|ENSMUSG00000021033.12|glutathione transferase zeta 1 (maleylacetoacetate isomerase)
mm39_v1_chr9_+_59496571_59496636	2.1024	Rfx3_Rfx1_Rfx4	ENSMUST00000121266.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000118164.3|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr1_-_133849131_133849152	2.08386	Rfx3_Rfx1_Rfx4	ENSMUST00000048432.6|Prelp|ENSMUSG00000041577.6|proline arginine-rich end leucine-rich repeat
mm39_v1_chr3_-_54962899_54962911	2.07398	Rfx3_Rfx1_Rfx4	ENSMUST00000199144.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr15_+_76580925_76580945	2.06988	Rfx3_Rfx1_Rfx4	ENSMUST00000023203.6|Gpt|ENSMUSG00000022546.6|glutamic pyruvic transaminase, soluble
mm39_v1_chr9_+_107926502_107926537	2.06881	Rfx3_Rfx1_Rfx4	ENSMUST00000047947.9|Gmppb|ENSMUSG00000070284.11|GDP-mannose pyrophosphorylase B
mm39_v1_chr11_-_4110286_4110304	2.05966	Rfx3_Rfx1_Rfx4	ENSMUST00000093381.11|Ccdc157|ENSMUSG00000051427.15|coiled-coil domain containing 157	ENSMUST00000101626.9|Ccdc157|ENSMUSG00000051427.15|coiled-coil domain containing 157
mm39_v1_chr3_-_54962922_54962940	2.04976	Rfx3_Rfx1_Rfx4	ENSMUST00000197238.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr17_+_26048010_26048050	2.02909	Rfx3_Rfx1_Rfx4	ENSMUST00000026832.14|Jmjd8|ENSMUSG00000025736.16|jumonji domain containing 8
mm39_v1_chr10_-_41366321_41366364	2.02679	Rfx3_Rfx1_Rfx4	ENSMUST00000019965.13|Smpd2|ENSMUSG00000019822.13|sphingomyelin phosphodiesterase 2, neutral
mm39_v1_chr4_+_152423344_152423429	2.02569	Rfx3_Rfx1_Rfx4	ENSMUST00000005175.5|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5
mm39_v1_chr17_-_24915121_24915150	2.00968	Rfx3_Rfx1_Rfx4	ENSMUST00000046839.10|Gfer|ENSMUSG00000040888.11|growth factor, augmenter of liver regeneration
mm39_v1_chr6_-_122317156_122317214	1.98047	Rfx3_Rfx1_Rfx4	ENSMUST00000159384.8|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr18_-_39051695_39051824	1.90216	Rfx3_Rfx1_Rfx4	ENSMUST00000040647.11|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1
mm39_v1_chr7_+_44078366_44078442	1.90127	Rfx3_Rfx1_Rfx4	ENSMUST00000127790.8|Lrrc4b|ENSMUSG00000047085.15|leucine rich repeat containing 4B
mm39_v1_chr4_-_155753628_155753690	1.89944	Rfx3_Rfx1_Rfx4	ENSMUST00000103176.10|Mib2|ENSMUSG00000029060.18|mindbomb E3 ubiquitin protein ligase 2
mm39_v1_chr15_+_76555815_76555837	1.87429	Rfx3_Rfx1_Rfx4	ENSMUST00000037551.15|Ppp1r16a|ENSMUSG00000033819.17|protein phosphatase 1, regulatory subunit 16A
mm39_v1_chr10_+_34173426_34173509	1.86891	Rfx3_Rfx1_Rfx4	ENSMUST00000047935.8|Tspyl4|ENSMUSG00000039485.9|TSPY-like 4
mm39_v1_chr8_+_123939596_123939650	1.84446	Rfx3_Rfx1_Rfx4	ENSMUST00000212892.2|Spata33|ENSMUSG00000048478.8|spermatogenesis associated 33	ENSMUST00000212161.2|Spata33|ENSMUSG00000048478.8|spermatogenesis associated 33	ENSMUST00000060133.8|Spata33|ENSMUSG00000048478.8|spermatogenesis associated 33	ENSMUST00000212346.2|Spata33|ENSMUSG00000048478.8|spermatogenesis associated 33	ENSMUST00000212637.2|Spata33|ENSMUSG00000048478.8|spermatogenesis associated 33
mm39_v1_chr12_-_86773160_86773250	1.83129	Rfx3_Rfx1_Rfx4	ENSMUST00000021682.9|Angel1|ENSMUSG00000021257.15|angel homolog 1
mm39_v1_chr17_+_46565116_46565116	1.82706	Rfx3_Rfx1_Rfx4	ENSMUST00000095262.6|Lrrc73|ENSMUSG00000071073.6|leucine rich repeat containing 73
mm39_v1_chr7_+_18725170_18725244	1.82542	Rfx3_Rfx1_Rfx4	ENSMUST00000059331.9|Mypop|ENSMUSG00000048481.16|Myb-related transcription factor, partner of profilin	ENSMUST00000131087.2|Mypop|ENSMUSG00000048481.16|Myb-related transcription factor, partner of profilin
mm39_v1_chr8_+_123939566_123939587	1.81617	Rfx3_Rfx1_Rfx4	ENSMUST00000212760.2|Spata33|ENSMUSG00000048478.8|spermatogenesis associated 33	ENSMUST00000212523.2|Spata33|ENSMUSG00000048478.8|spermatogenesis associated 33
mm39_v1_chr4_+_43669266_43669329	1.81466	Rfx3_Rfx1_Rfx4	ENSMUST00000107864.8|Tmem8b|ENSMUSG00000078716.11|transmembrane protein 8B
mm39_v1_chr9_+_110306020_110306048	1.7792	Rfx3_Rfx1_Rfx4	ENSMUST00000198858.5|Kif9|ENSMUSG00000032489.18|kinesin family member 9
mm39_v1_chr9_-_121668527_121668563	1.76428	Rfx3_Rfx1_Rfx4	ENSMUST00000135986.9|Ccdc13|ENSMUSG00000079235.11|coiled-coil domain containing 13
mm39_v1_chr10_-_81308693_81308961	1.75922	Rfx3_Rfx1_Rfx4	ENSMUST00000147524.3|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5	ENSMUST00000119060.8|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5
mm39_v1_chr7_-_79392763_79392839	1.74862	Rfx3_Rfx1_Rfx4	ENSMUST00000032761.8|Pex11a|ENSMUSG00000030545.10|peroxisomal biogenesis factor 11 alpha
mm39_v1_chr8_-_65186565_65186588	1.73971	Rfx3_Rfx1_Rfx4	ENSMUST00000141021.2|Msmo1|ENSMUSG00000031604.11|methylsterol monoxygenase 1
mm39_v1_chr15_+_76555838_76555909	1.73839	Rfx3_Rfx1_Rfx4	ENSMUST00000135388.3|Ppp1r16a|ENSMUSG00000033819.17|protein phosphatase 1, regulatory subunit 16A
mm39_v1_chr2_+_121120070_121120087	1.73684	Rfx3_Rfx1_Rfx4	ENSMUST00000094639.10|Map1a|ENSMUSG00000027254.14|microtubule-associated protein 1 A
mm39_v1_chr11_+_102036356_102036375	1.73034	Rfx3_Rfx1_Rfx4	ENSMUST00000055409.6|Nags|ENSMUSG00000048217.12|N-acetylglutamate synthase
mm39_v1_chr2_+_145776720_145776736	1.71836	Rfx3_Rfx1_Rfx4	ENSMUST00000152515.8|Cfap61|ENSMUSG00000037143.18|cilia and flagella associated protein 61	ENSMUST00000138774.8|Cfap61|ENSMUSG00000037143.18|cilia and flagella associated protein 61	ENSMUST00000130168.8|Cfap61|ENSMUSG00000037143.18|cilia and flagella associated protein 61	ENSMUST00000133433.8|Cfap61|ENSMUSG00000037143.18|cilia and flagella associated protein 61	ENSMUST00000118002.2|Cfap61|ENSMUSG00000037143.18|cilia and flagella associated protein 61
mm39_v1_chr9_+_108447077_108447142	1.70435	Rfx3_Rfx1_Rfx4	ENSMUST00000019183.14|Dalrd3|ENSMUSG00000019039.15|DALR anticodon binding domain containing 3
mm39_v1_chr17_+_35055962_35056024	1.69168	Rfx3_Rfx1_Rfx4	ENSMUST00000173874.8|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease	ENSMUST00000180043.8|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease	ENSMUST00000046244.15|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease
mm39_v1_chr9_+_74860133_74860246	1.68468	Rfx3_Rfx1_Rfx4	ENSMUST00000215370.2|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr9_-_63509699_63509742	1.67753	Rfx3_Rfx1_Rfx4	ENSMUST00000171243.2|Iqch|ENSMUSG00000037801.14|IQ motif containing H	ENSMUST00000163982.8|Iqch|ENSMUSG00000037801.14|IQ motif containing H	ENSMUST00000163624.8|Iqch|ENSMUSG00000037801.14|IQ motif containing H
mm39_v1_chr17_+_46558995_46559065	1.66282	Rfx3_Rfx1_Rfx4	ENSMUST00000095263.10|Yipf3|ENSMUSG00000071074.10|Yip1 domain family, member 3	ENSMUST00000123311.8|Yipf3|ENSMUSG00000071074.10|Yip1 domain family, member 3
mm39_v1_chr9_-_70048766_70048860	1.65098	Rfx3_Rfx1_Rfx4	ENSMUST00000034749.16|Fam81a|ENSMUSG00000032224.16|family with sequence similarity 81, member A
mm39_v1_chr3_+_103875904_103875977	1.63839	Rfx3_Rfx1_Rfx4	ENSMUST00000156262.8|Phtf1|ENSMUSG00000058388.15|putative homeodomain transcription factor 1
mm39_v1_chr13_-_58506890_58506936	1.63696	Rfx3_Rfx1_Rfx4	ENSMUST00000225388.2|Kif27|ENSMUSG00000060176.5|kinesin family member 27
mm39_v1_chrX_-_50294652_50294716	1.63048	Rfx3_Rfx1_Rfx4	ENSMUST00000114875.8|Mbnl3|ENSMUSG00000036109.18|muscleblind like splicing factor 3
mm39_v1_chr4_+_130001349_130001419	1.63	Rfx3_Rfx1_Rfx4	ENSMUST00000030563.6|Pef1|ENSMUSG00000028779.17|penta-EF hand domain containing 1
mm39_v1_chr7_-_133378468_133378539	1.62372	Rfx3_Rfx1_Rfx4	ENSMUST00000033290.12|Dhx32|ENSMUSG00000030986.14|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm39_v1_chr4_-_119272690_119272720	1.61271	Rfx3_Rfx1_Rfx4	ENSMUST00000238287.2|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30	ENSMUST00000238759.2|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30	ENSMUST00000063642.10|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30
mm39_v1_chr4_+_41465134_41465164	1.61071	Rfx3_Rfx1_Rfx4	ENSMUST00000030154.7|Nudt2|ENSMUSG00000028443.7|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm39_v1_chr17_+_80514889_80514946	1.60823	Rfx3_Rfx1_Rfx4	ENSMUST00000134652.2|Ttc39d|ENSMUSG00000046196.5|tetratricopeptide repeat domain 39D
mm39_v1_chr7_-_133378410_133378433	1.60526	Rfx3_Rfx1_Rfx4	ENSMUST00000130182.2|Dhx32|ENSMUSG00000030986.14|DEAH (Asp-Glu-Ala-His) box polypeptide 32	ENSMUST00000106139.8|Dhx32|ENSMUSG00000030986.14|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm39_v1_chr17_-_24915037_24915082	1.59882	Rfx3_Rfx1_Rfx4	ENSMUST00000234235.2|Gfer|ENSMUSG00000040888.11|growth factor, augmenter of liver regeneration
mm39_v1_chr2_+_145776697_145776717	1.58295	Rfx3_Rfx1_Rfx4	ENSMUST00000116398.8|Cfap61|ENSMUSG00000037143.18|cilia and flagella associated protein 61	ENSMUST00000126415.8|Cfap61|ENSMUSG00000037143.18|cilia and flagella associated protein 61
mm39_v1_chr17_+_85928459_85928469	1.55625	Rfx3_Rfx1_Rfx4	ENSMUST00000162695.3|Six3|ENSMUSG00000038805.11|sine oculis-related homeobox 3
mm39_v1_chr7_+_27878894_27878960	1.54239	Rfx3_Rfx1_Rfx4	ENSMUST00000085901.13|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	ENSMUST00000172761.8|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm39_v1_chr3_+_94391676_94391717	1.53792	Rfx3_Rfx1_Rfx4	ENSMUST00000198384.3|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr5_-_142536720_142536865	1.53496	Rfx3_Rfx1_Rfx4	ENSMUST00000129212.2|Radil|ENSMUSG00000029576.18|Ras association and DIL domains	ENSMUST00000110785.2|Radil|ENSMUSG00000029576.18|Ras association and DIL domains	ENSMUST00000063635.15|Radil|ENSMUSG00000029576.18|Ras association and DIL domains
mm39_v1_chr7_+_27879650_27879692	1.52716	Rfx3_Rfx1_Rfx4	ENSMUST00000172467.8|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm39_v1_chr11_-_105834953_105835053	1.52695	Rfx3_Rfx1_Rfx4	ENSMUST00000184086.8|Cyb561|ENSMUSG00000019590.17|cytochrome b-561
mm39_v1_chr9_+_107926441_107926499	1.52005	Rfx3_Rfx1_Rfx4	ENSMUST00000112295.9|Gmppb|ENSMUSG00000070284.11|GDP-mannose pyrophosphorylase B
mm39_v1_chr7_+_3439144_3439225	1.49097	Rfx3_Rfx1_Rfx4	ENSMUST00000182222.8|Cacng8|ENSMUSG00000053395.16|calcium channel, voltage-dependent, gamma subunit 8
mm39_v1_chr9_+_47441471_47441671	1.48773	Rfx3_Rfx1_Rfx4	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr6_-_72496986_72497020	1.47146	Rfx3_Rfx1_Rfx4	ENSMUST00000160123.9|Sh2d6|ENSMUSG00000052631.16|SH2 domain containing 6	ENSMUST00000234038.2|Sh2d6|ENSMUSG00000052631.16|SH2 domain containing 6	ENSMUST00000235004.2|Sh2d6|ENSMUSG00000052631.16|SH2 domain containing 6
mm39_v1_chr14_-_25927674_25927674	1.46286	Rfx3_Rfx1_Rfx4	ENSMUST00000100811.6|Tmem254a|ENSMUSG00000072676.13|transmembrane protein 254a
mm39_v1_chr9_+_110306052_110306068	1.46148	Rfx3_Rfx1_Rfx4	ENSMUST00000197248.5|Kif9|ENSMUSG00000032489.18|kinesin family member 9	ENSMUST00000061155.12|Kif9|ENSMUSG00000032489.18|kinesin family member 9	ENSMUST00000198043.5|Kif9|ENSMUSG00000032489.18|kinesin family member 9	ENSMUST00000084952.8|Kif9|ENSMUSG00000032489.18|kinesin family member 9
mm39_v1_chr19_+_5100815_5100887	1.45683	Rfx3_Rfx1_Rfx4	ENSMUST00000224178.2|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1	ENSMUST00000225799.3|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1	ENSMUST00000025818.8|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1
mm39_v1_chr9_-_63509747_63509776	1.45234	Rfx3_Rfx1_Rfx4	ENSMUST00000080527.12|Iqch|ENSMUSG00000037801.14|IQ motif containing H	ENSMUST00000042322.11|Iqch|ENSMUSG00000037801.14|IQ motif containing H
mm39_v1_chr2_+_153334710_153334710	1.44675	Rfx3_Rfx1_Rfx4	ENSMUST00000109783.2|4930404H24Rik|ENSMUSG00000079001.2|RIKEN cDNA 4930404H24 gene
mm39_v1_chr3_+_94391644_94391671	1.43922	Rfx3_Rfx1_Rfx4	ENSMUST00000197677.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr4_-_119272667_119272685	1.43657	Rfx3_Rfx1_Rfx4	ENSMUST00000238609.2|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30
mm39_v1_chr12_-_84455764_84455808	1.43231	Rfx3_Rfx1_Rfx4	ENSMUST00000120942.8|Entpd5|ENSMUSG00000021236.17|ectonucleoside triphosphate diphosphohydrolase 5	ENSMUST00000110272.9|Entpd5|ENSMUSG00000021236.17|ectonucleoside triphosphate diphosphohydrolase 5
mm39_v1_chr19_-_45548942_45548976	1.42417	Rfx3_Rfx1_Rfx4	ENSMUST00000026239.7|Poll|ENSMUSG00000025218.7|polymerase (DNA directed), lambda
mm39_v1_chr11_-_59730654_59730674	1.42297	Rfx3_Rfx1_Rfx4	ENSMUST00000019517.10|Cops3|ENSMUSG00000019373.12|COP9 signalosome subunit 3
mm39_v1_chr19_+_45549009_45549086	1.42041	Rfx3_Rfx1_Rfx4	ENSMUST00000047057.9|Gm17018|ENSMUSG00000041035.10|predicted gene 17018
mm39_v1_chr19_+_5100475_5100509	1.40664	Rfx3_Rfx1_Rfx4	ENSMUST00000225427.2|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1
mm39_v1_chr9_+_74860335_74860374	1.40602	Rfx3_Rfx1_Rfx4	ENSMUST00000170846.8|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr11_-_101316156_101316205	1.40372	Rfx3_Rfx1_Rfx4	ENSMUST00000103102.10|Ptges3l|ENSMUSG00000097487.8|prostaglandin E synthase 3 like
mm39_v1_chr5_-_87240405_87240422	1.39965	Rfx3_Rfx1_Rfx4	ENSMUST00000132667.2|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36	ENSMUST00000145617.8|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36	ENSMUST00000094649.11|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36
mm39_v1_chr5_+_30869193_30869259	1.39799	Rfx3_Rfx1_Rfx4	ENSMUST00000088081.11|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5	ENSMUST00000101442.4|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr2_-_26030453_26030540	1.37968	Rfx3_Rfx1_Rfx4	ENSMUST00000133808.2|Tmem250-ps|ENSMUSG00000087679.3|transmembrane protein 250, pseudogene
mm39_v1_chr11_-_105347500_105347574	1.37759	Rfx3_Rfx1_Rfx4	ENSMUST00000049995.10|Marchf10|ENSMUSG00000078627.10|membrane associated ring-CH-type finger 10	ENSMUST00000100332.4|Marchf10|ENSMUSG00000078627.10|membrane associated ring-CH-type finger 10
mm39_v1_chr9_+_50528813_50528861	1.37531	Rfx3_Rfx1_Rfx4	ENSMUST00000141366.8|Pih1d2|ENSMUSG00000000167.15|PIH1 domain containing 2
mm39_v1_chr9_-_21913833_21913894	1.37467	Rfx3_Rfx1_Rfx4	ENSMUST00000115336.10|Odad3|ENSMUSG00000039632.14|outer dynein arm docking complex subunit 3
mm39_v1_chr7_+_29931309_29931457	1.36697	Rfx3_Rfx1_Rfx4	ENSMUST00000019882.16|Polr2i|ENSMUSG00000019738.16|polymerase (RNA) II (DNA directed) polypeptide I	ENSMUST00000149654.8|Polr2i|ENSMUSG00000019738.16|polymerase (RNA) II (DNA directed) polypeptide I
mm39_v1_chr5_+_138170259_138170283	1.35622	Rfx3_Rfx1_Rfx4	ENSMUST00000019662.11|Ap4m1|ENSMUSG00000019518.12|adaptor-related protein complex AP-4, mu 1	ENSMUST00000151318.8|Ap4m1|ENSMUSG00000019518.12|adaptor-related protein complex AP-4, mu 1
mm39_v1_chr10_+_80134917_80134960	1.35593	Rfx3_Rfx1_Rfx4	ENSMUST00000154212.8|Apc2|ENSMUSG00000020135.14|APC regulator of WNT signaling pathway 2
mm39_v1_chr15_+_100659729_100659750	1.34504	Rfx3_Rfx1_Rfx4	ENSMUST00000161564.2|Slc4a8|ENSMUSG00000023032.13|solute carrier family 4 (anion exchanger), member 8
mm39_v1_chr19_+_6413703_6413749	1.34495	Rfx3_Rfx1_Rfx4	ENSMUST00000131252.8|Sf1|ENSMUSG00000024949.18|splicing factor 1	ENSMUST00000113489.8|Sf1|ENSMUSG00000024949.18|splicing factor 1
mm39_v1_chr7_-_12788441_12788441	1.34008	Rfx3_Rfx1_Rfx4	ENSMUST00000182087.2|Mzf1|ENSMUSG00000030380.18|myeloid zinc finger 1
mm39_v1_chr10_-_39775182_39775266	1.33742	Rfx3_Rfx1_Rfx4	ENSMUST00000178045.9|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4	ENSMUST00000178563.3|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4
mm39_v1_chr9_-_21913896_21913936	1.33645	Rfx3_Rfx1_Rfx4	ENSMUST00000044926.6|Odad3|ENSMUSG00000039632.14|outer dynein arm docking complex subunit 3
mm39_v1_chr7_+_29931735_29931773	1.33554	Rfx3_Rfx1_Rfx4	ENSMUST00000108193.2|Polr2i|ENSMUSG00000019738.16|polymerase (RNA) II (DNA directed) polypeptide I	ENSMUST00000108192.2|Polr2i|ENSMUSG00000019738.16|polymerase (RNA) II (DNA directed) polypeptide I
mm39_v1_chr6_+_30509826_30509891	1.33525	Rfx3_Rfx1_Rfx4	ENSMUST00000031797.11|Ssmem1|ENSMUSG00000029784.14|serine-rich single-pass membrane protein 1
mm39_v1_chr12_-_104010690_104010707	1.32863	Rfx3_Rfx1_Rfx4	ENSMUST00000043915.4|Serpina12|ENSMUSG00000041567.4|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12
mm39_v1_chr13_+_43769426_43769469	1.32779	Rfx3_Rfx1_Rfx4	ENSMUST00000161817.2|Rnf182|ENSMUSG00000044164.3|ring finger protein 182
mm39_v1_chr15_-_89064936_89064991	1.32756	Rfx3_Rfx1_Rfx4	ENSMUST00000109331.9|Plxnb2|ENSMUSG00000036606.18|plexin B2
mm39_v1_chr16_-_90866032_90866081	1.32492	Rfx3_Rfx1_Rfx4	ENSMUST00000035689.8|4932438H23Rik|ENSMUSG00000039851.12|RIKEN cDNA 4932438H23 gene	ENSMUST00000114076.2|4932438H23Rik|ENSMUSG00000039851.12|RIKEN cDNA 4932438H23 gene
mm39_v1_chr5_+_30868908_30868932	1.31826	Rfx3_Rfx1_Rfx4	ENSMUST00000114729.8|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr6_-_83102010_83102152	1.3168	Rfx3_Rfx1_Rfx4	ENSMUST00000032109.5|Ino80b|ENSMUSG00000030034.13|INO80 complex subunit B
mm39_v1_chr9_+_43978290_43978319	1.30921	Rfx3_Rfx1_Rfx4	ENSMUST00000034508.14|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr7_+_6733561_6733645	1.3086	Rfx3_Rfx1_Rfx4	ENSMUST00000200535.6|Usp29|ENSMUSG00000051527.12|ubiquitin specific peptidase 29
mm39_v1_chr16_-_3726452_3726487	1.30827	Rfx3_Rfx1_Rfx4	ENSMUST00000123235.3|1700037C18Rik|ENSMUSG00000005983.16|RIKEN cDNA 1700037C18 gene
mm39_v1_chr2_-_73605684_73605723	1.30646	Rfx3_Rfx1_Rfx4	ENSMUST00000112024.10|Chn1|ENSMUSG00000056486.19|chimerin 1	ENSMUST00000180045.8|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chr7_+_45434755_45434814	1.30371	Rfx3_Rfx1_Rfx4	ENSMUST00000233503.2|Lmtk3|ENSMUSG00000062044.17|lemur tyrosine kinase 3	ENSMUST00000120005.10|Lmtk3|ENSMUSG00000062044.17|lemur tyrosine kinase 3	ENSMUST00000211609.2|Lmtk3|ENSMUSG00000062044.17|lemur tyrosine kinase 3
mm39_v1_chr19_-_4889284_4889306	1.29754	Rfx3_Rfx1_Rfx4	ENSMUST00000236451.2|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase	ENSMUST00000236178.2|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase
mm39_v1_chr17_+_57318469_57318596	1.29017	Rfx3_Rfx1_Rfx4	ENSMUST00000210548.2|Gm17949|ENSMUSG00000109739.2|predicted gene, 17949
mm39_v1_chr3_-_89121147_89121230	1.28749	Rfx3_Rfx1_Rfx4	ENSMUST00000173477.8|Mtx1|ENSMUSG00000064068.16|metaxin 1	ENSMUST00000119222.9|Mtx1|ENSMUSG00000064068.16|metaxin 1
mm39_v1_chr10_-_80895949_80896039	1.28717	Rfx3_Rfx1_Rfx4	ENSMUST00000219401.2|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	ENSMUST00000220317.2|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	ENSMUST00000005067.6|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	ENSMUST00000218208.2|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm39_v1_chr19_-_4889314_4889368	1.28307	Rfx3_Rfx1_Rfx4	ENSMUST00000235245.2|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase	ENSMUST00000037246.7|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase
mm39_v1_chr4_+_152423075_152423166	1.27953	Rfx3_Rfx1_Rfx4	ENSMUST00000030775.12|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5	ENSMUST00000164662.8|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5
mm39_v1_chr17_-_36290129_36290418	1.27922	Rfx3_Rfx1_Rfx4	ENSMUST00000165613.9|Prr3|ENSMUSG00000038500.16|proline-rich polypeptide 3	ENSMUST00000173872.8|Prr3|ENSMUSG00000038500.16|proline-rich polypeptide 3
mm39_v1_chr6_+_34757346_34757413	1.27389	Rfx3_Rfx1_Rfx4	ENSMUST00000115016.8|Agbl3|ENSMUSG00000038836.16|ATP/GTP binding protein-like 3	ENSMUST00000115017.8|Agbl3|ENSMUSG00000038836.16|ATP/GTP binding protein-like 3
mm39_v1_chr7_-_118304930_118305009	1.27301	Rfx3_Rfx1_Rfx4	ENSMUST00000207323.2|Gde1|ENSMUSG00000033917.16|glycerophosphodiester phosphodiesterase 1	ENSMUST00000038791.15|Gde1|ENSMUSG00000033917.16|glycerophosphodiester phosphodiesterase 1
mm39_v1_chr17_-_26014613_26014638	1.27256	Rfx3_Rfx1_Rfx4	ENSMUST00000235889.2|Gm50367|ENSMUSG00000118135.2|predicted gene, 50367
mm39_v1_chr11_+_101443014_101443060	1.26803	Rfx3_Rfx1_Rfx4	ENSMUST00000147239.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor
mm39_v1_chr13_+_43769186_43769262	1.25936	Rfx3_Rfx1_Rfx4	ENSMUST00000059986.3|Rnf182|ENSMUSG00000044164.3|ring finger protein 182
mm39_v1_chr5_-_149559667_149559678	1.2547	Rfx3_Rfx1_Rfx4	ENSMUST00000074846.14|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr15_-_76010736_76010761	1.25325	Rfx3_Rfx1_Rfx4	ENSMUST00000054022.12|BC024139|ENSMUSG00000044361.17|cDNA sequence BC024139	ENSMUST00000089654.4|BC024139|ENSMUSG00000044361.17|cDNA sequence BC024139
mm39_v1_chr7_+_6175532_6175571	1.24963	Rfx3_Rfx1_Rfx4	ENSMUST00000207329.2|Zfp444|ENSMUSG00000044876.16|zinc finger protein 444
mm39_v1_chr5_+_120569764_120569764	1.24624	Rfx3_Rfx1_Rfx4	ENSMUST00000031591.10|Lhx5|ENSMUSG00000029595.10|LIM homeobox protein 5
mm39_v1_chr2_-_35939377_35939418	1.24594	Rfx3_Rfx1_Rfx4	ENSMUST00000070112.6|Ndufa8|ENSMUSG00000026895.8|NADH:ubiquinone oxidoreductase subunit A8
mm39_v1_chr10_+_87695117_87695128	1.23712	Rfx3_Rfx1_Rfx4	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr2_-_73605387_73605456	1.23382	Rfx3_Rfx1_Rfx4	ENSMUST00000166199.9|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chr12_-_103739847_103739869	1.2314	Rfx3_Rfx1_Rfx4	ENSMUST00000078869.6|Serpina1d|ENSMUSG00000071177.5|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm39_v1_chr4_+_138161958_138162060	1.22825	Rfx3_Rfx1_Rfx4	ENSMUST00000044058.11|Mul1|ENSMUSG00000041241.13|mitochondrial ubiquitin ligase activator of NFKB 1	ENSMUST00000105813.8|Mul1|ENSMUSG00000041241.13|mitochondrial ubiquitin ligase activator of NFKB 1	ENSMUST00000105815.2|Mul1|ENSMUSG00000041241.13|mitochondrial ubiquitin ligase activator of NFKB 1
mm39_v1_chr12_-_83609217_83609241	1.21923	Rfx3_Rfx1_Rfx4	ENSMUST00000222448.2|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr18_-_78249612_78249655	1.21686	Rfx3_Rfx1_Rfx4	ENSMUST00000163367.3|Slc14a2|ENSMUSG00000024552.17|solute carrier family 14 (urea transporter), member 2
mm39_v1_chr3_-_89152320_89152506	1.21622	Rfx3_Rfx1_Rfx4	ENSMUST00000107464.8|Trim46|ENSMUSG00000042766.18|tripartite motif-containing 46	ENSMUST00000090924.13|Trim46|ENSMUSG00000042766.18|tripartite motif-containing 46
mm39_v1_chr4_-_102971752_102971780	1.21545	Rfx3_Rfx1_Rfx4	ENSMUST00000106868.4|Dnai4|ENSMUSG00000035126.20|dynein axonemal intermediate chain 4
mm39_v1_chr5_-_149559792_149559841	1.20356	Rfx3_Rfx1_Rfx4	ENSMUST00000202361.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1	ENSMUST00000202089.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1	ENSMUST00000200825.2|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1	ENSMUST00000201559.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr4_-_102971434_102971496	1.20328	Rfx3_Rfx1_Rfx4	ENSMUST00000036557.15|Dnai4|ENSMUSG00000035126.20|dynein axonemal intermediate chain 4	ENSMUST00000036451.15|Dnai4|ENSMUSG00000035126.20|dynein axonemal intermediate chain 4
mm39_v1_chr7_-_79882228_79882246	1.19824	Rfx3_Rfx1_Rfx4	ENSMUST00000123279.8|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)
mm39_v1_chr19_+_6111204_6111287	1.18905	Rfx3_Rfx1_Rfx4	ENSMUST00000162726.5|Znhit2|ENSMUSG00000075227.7|zinc finger, HIT domain containing 2
mm39_v1_chr17_-_45903494_45903507	1.17363	Rfx3_Rfx1_Rfx4	ENSMUST00000163492.8|Slc29a1|ENSMUSG00000023942.16|solute carrier family 29 (nucleoside transporters), member 1
mm39_v1_chr4_-_141742367_141742382	1.17192	Rfx3_Rfx1_Rfx4	ENSMUST00000105780.8|Fhad1|ENSMUSG00000051435.12|forkhead-associated (FHA) phosphopeptide binding domain 1
mm39_v1_chr17_-_85397627_85397703	1.16998	Rfx3_Rfx1_Rfx4	ENSMUST00000072406.5|Prepl|ENSMUSG00000024127.16|prolyl endopeptidase-like	ENSMUST00000171795.9|Prepl|ENSMUSG00000024127.16|prolyl endopeptidase-like	ENSMUST00000234676.2|Prepl|ENSMUSG00000024127.16|prolyl endopeptidase-like
mm39_v1_chr10_+_106306122_106306228	1.16874	Rfx3_Rfx1_Rfx4	ENSMUST00000029404.17|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	ENSMUST00000217854.2|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm39_v1_chr5_+_123390149_123390203	1.16046	Rfx3_Rfx1_Rfx4	ENSMUST00000121964.8|Wdr66|ENSMUSG00000029442.19|WD repeat domain 66
mm39_v1_chrX_+_7786061_7786140	1.15424	Rfx3_Rfx1_Rfx4	ENSMUST00000041096.4|Pcsk1n|ENSMUSG00000039278.11|proprotein convertase subtilisin/kexin type 1 inhibitor
mm39_v1_chr9_-_121106209_121106282	1.15393	Rfx3_Rfx1_Rfx4	ENSMUST00000051479.13|Ulk4|ENSMUSG00000040936.16|unc-51-like kinase 4	ENSMUST00000171923.8|Ulk4|ENSMUSG00000040936.16|unc-51-like kinase 4
mm39_v1_chr6_+_55180366_55180444	1.1507	Rfx3_Rfx1_Rfx4	ENSMUST00000204842.3|Mindy4|ENSMUSG00000038022.12|MINDY lysine 48 deubiquitinase 4	ENSMUST00000053094.8|Mindy4|ENSMUSG00000038022.12|MINDY lysine 48 deubiquitinase 4
mm39_v1_chr13_+_25029088_25029167	1.14629	Rfx3_Rfx1_Rfx4	ENSMUST00000006893.9|D130043K22Rik|ENSMUSG00000006711.16|RIKEN cDNA D130043K22 gene
mm39_v1_chr5_+_29400981_29401030	1.1429	Rfx3_Rfx1_Rfx4	ENSMUST00000160888.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000159272.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000001247.12|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000161398.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000160246.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32
mm39_v1_chr9_+_72892693_72892711	1.13812	Rfx3_Rfx1_Rfx4	ENSMUST00000037977.15|Ccpg1|ENSMUSG00000034563.17|cell cycle progression 1
mm39_v1_chr14_-_54491365_54491376	1.12105	Rfx3_Rfx1_Rfx4	ENSMUST00000128231.2|Dad1|ENSMUSG00000022174.9|defender against cell death 1
mm39_v1_chr11_-_116226175_116226225	1.11951	Rfx3_Rfx1_Rfx4	ENSMUST00000036215.8|Foxj1|ENSMUSG00000034227.8|forkhead box J1
mm39_v1_chr7_-_29426425_29426440	1.11064	Rfx3_Rfx1_Rfx4	ENSMUST00000061193.4|Catsperg2|ENSMUSG00000049123.11|cation channel sperm associated auxiliary subunit gamma 2
mm39_v1_chr7_+_108549545_108549696	1.10835	Rfx3_Rfx1_Rfx4	ENSMUST00000207583.2|Tub|ENSMUSG00000031028.15|tubby bipartite transcription factor
mm39_v1_chr6_+_55994473_55994501	1.09852	Rfx3_Rfx1_Rfx4	ENSMUST00000052827.6|Ppp1r17|ENSMUSG00000002930.7|protein phosphatase 1, regulatory subunit 17
mm39_v1_chr5_+_66417488_66417655	1.09385	Rfx3_Rfx1_Rfx4	ENSMUST00000031109.7|Nsun7|ENSMUSG00000029206.14|NOL1/NOP2/Sun domain family, member 7
mm39_v1_chr7_+_98917542_98917627	1.09247	Rfx3_Rfx1_Rfx4	ENSMUST00000107100.3|Map6|ENSMUSG00000055407.15|microtubule-associated protein 6	ENSMUST00000208605.2|Map6|ENSMUSG00000055407.15|microtubule-associated protein 6
mm39_v1_chr17_-_36290571_36290723	1.09078	Rfx3_Rfx1_Rfx4	ENSMUST00000173724.2|Prr3|ENSMUSG00000038500.16|proline-rich polypeptide 3	ENSMUST00000172900.8|Prr3|ENSMUSG00000038500.16|proline-rich polypeptide 3	ENSMUST00000174849.8|Prr3|ENSMUSG00000038500.16|proline-rich polypeptide 3
mm39_v1_chr8_+_46080840_46080866	1.086	Rfx3_Rfx1_Rfx4	ENSMUST00000135336.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr16_-_95993420_95993463	1.07964	Rfx3_Rfx1_Rfx4	ENSMUST00000113804.8|Lca5l|ENSMUSG00000045275.18|Leber congenital amaurosis 5-like	ENSMUST00000054855.14|Lca5l|ENSMUSG00000045275.18|Leber congenital amaurosis 5-like
mm39_v1_chr3_+_82265351_82265417	1.07692	Rfx3_Rfx1_Rfx4	ENSMUST00000193559.6|Map9|ENSMUSG00000033900.14|microtubule-associated protein 9	ENSMUST00000192595.6|Map9|ENSMUSG00000033900.14|microtubule-associated protein 9	ENSMUST00000091014.10|Map9|ENSMUSG00000033900.14|microtubule-associated protein 9
mm39_v1_chr10_+_42736539_42736625	1.07323	Rfx3_Rfx1_Rfx4	ENSMUST00000157071.8|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr9_-_24414423_24414528	1.07295	Rfx3_Rfx1_Rfx4	ENSMUST00000142064.8|Dpy19l1|ENSMUSG00000043067.16|dpy-19-like 1 (C. elegans)	ENSMUST00000170356.2|Dpy19l1|ENSMUSG00000043067.16|dpy-19-like 1 (C. elegans)
mm39_v1_chr2_-_164699462_164699631	1.06957	Rfx3_Rfx1_Rfx4	ENSMUST00000109316.8|Pltp|ENSMUSG00000017754.14|phospholipid transfer protein	ENSMUST00000156255.8|Pltp|ENSMUSG00000017754.14|phospholipid transfer protein	ENSMUST00000128110.2|Pltp|ENSMUSG00000017754.14|phospholipid transfer protein	ENSMUST00000109317.10|Pltp|ENSMUSG00000017754.14|phospholipid transfer protein	ENSMUST00000059954.14|Pltp|ENSMUSG00000017754.14|phospholipid transfer protein
mm39_v1_chr4_-_119272640_119272658	1.06839	Rfx3_Rfx1_Rfx4	ENSMUST00000238293.2|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30
mm39_v1_chr7_+_6733684_6733740	1.06405	Rfx3_Rfx1_Rfx4	ENSMUST00000197117.5|Usp29|ENSMUSG00000051527.12|ubiquitin specific peptidase 29
mm39_v1_chr7_-_140462187_140462219	1.06255	Rfx3_Rfx1_Rfx4	ENSMUST00000211179.2|Sirt3|ENSMUSG00000025486.18|sirtuin 3
mm39_v1_chr9_-_64248426_64248539	1.06233	Rfx3_Rfx1_Rfx4	ENSMUST00000120760.8|Dis3l|ENSMUSG00000032396.18|DIS3 like exosome 3'-5' exoribonuclease	ENSMUST00000168844.9|Dis3l|ENSMUSG00000032396.18|DIS3 like exosome 3'-5' exoribonuclease
mm39_v1_chr1_-_60082246_60082334	1.06226	Rfx3_Rfx1_Rfx4	ENSMUST00000027172.13|Ica1l|ENSMUSG00000026018.13|islet cell autoantigen 1-like	ENSMUST00000191251.7|Ica1l|ENSMUSG00000026018.13|islet cell autoantigen 1-like
mm39_v1_chr2_+_35939463_35939532	1.05855	Rfx3_Rfx1_Rfx4	ENSMUST00000028256.5|Morn5|ENSMUSG00000026894.5|MORN repeat containing 5
mm39_v1_chr17_-_56424577_56424596	1.05202	Rfx3_Rfx1_Rfx4	ENSMUST00000019808.12|Plin5|ENSMUSG00000011305.12|perilipin 5
mm39_v1_chr9_-_51013361_51013382	1.04906	Rfx3_Rfx1_Rfx4	ENSMUST00000170947.3|Hoatz|ENSMUSG00000032057.10|HOATZ cilia and flagella associated protein
mm39_v1_chr2_+_164302863_164302981	1.04324	Rfx3_Rfx1_Rfx4	ENSMUST00000072452.11|Sys1|ENSMUSG00000045503.17|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm39_v1_chr4_+_102971909_102971959	1.03979	Rfx3_Rfx1_Rfx4	ENSMUST00000143417.8|Mier1|ENSMUSG00000028522.17|MEIR1 treanscription regulator
mm39_v1_chr17_+_24915208_24915295	1.0385	Rfx3_Rfx1_Rfx4	ENSMUST00000019464.8|Noxo1|ENSMUSG00000019320.15|NADPH oxidase organizer 1
mm39_v1_chr7_-_28913382_28913458	1.03598	Rfx3_Rfx1_Rfx4	ENSMUST00000169143.8|Catsperg1|ENSMUSG00000049676.15|cation channel sperm associated auxiliary subunit gamma 1	ENSMUST00000047846.13|Catsperg1|ENSMUSG00000049676.15|cation channel sperm associated auxiliary subunit gamma 1
mm39_v1_chr1_+_191709329_191709349	1.03456	Rfx3_Rfx1_Rfx4	ENSMUST00000180463.3|Rd3|ENSMUSG00000049353.18|retinal degeneration 3	ENSMUST00000181512.8|Rd3|ENSMUSG00000049353.18|retinal degeneration 3
mm39_v1_chr9_+_43978369_43978432	1.03365	Rfx3_Rfx1_Rfx4	ENSMUST00000177054.8|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr17_+_46564457_46564457	1.0311	Rfx3_Rfx1_Rfx4	ENSMUST00000233692.2|Lrrc73|ENSMUSG00000071073.6|leucine rich repeat containing 73
mm39_v1_chr14_+_55332241_55332241	1.02622	Rfx3_Rfx1_Rfx4	ENSMUST00000050575.9|Thtpa|ENSMUSG00000045691.15|thiamine triphosphatase
mm39_v1_chr10_-_116786271_116786342	1.02283	Rfx3_Rfx1_Rfx4	ENSMUST00000020375.7|Rab3ip|ENSMUSG00000064181.7|RAB3A interacting protein	ENSMUST00000219109.2|Rab3ip|ENSMUSG00000064181.7|RAB3A interacting protein
mm39_v1_chr8_-_40761372_40761372	1.01638	Rfx3_Rfx1_Rfx4	ENSMUST00000118639.2|Fgf20|ENSMUSG00000031603.15|fibroblast growth factor 20
mm39_v1_chr12_-_84195222_84195273	1.01141	Rfx3_Rfx1_Rfx4	ENSMUST00000061425.3|Pnma1|ENSMUSG00000054383.3|paraneoplastic antigen MA1
mm39_v1_chr8_-_123939480_123939539	0.998737	Rfx3_Rfx1_Rfx4	ENSMUST00000000759.9|Chmp1a|ENSMUSG00000000743.10|charged multivesicular body protein 1A
mm39_v1_chr11_+_115054157_115054174	0.991172	Rfx3_Rfx1_Rfx4	ENSMUST00000021077.4|Slc9a3r1|ENSMUSG00000020733.4|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
mm39_v1_chr9_+_50528608_50528661	0.985693	Rfx3_Rfx1_Rfx4	ENSMUST00000000171.15|Pih1d2|ENSMUSG00000000167.15|PIH1 domain containing 2	ENSMUST00000151197.8|Pih1d2|ENSMUSG00000000167.15|PIH1 domain containing 2
mm39_v1_chrX_-_73689241_73689241	0.981951	Rfx3_Rfx1_Rfx4	ENSMUST00000114119.2|Pwwp4c|ENSMUSG00000079534.2|PWWP domain containing 4C
mm39_v1_chr1_-_171188302_171188366	0.98189	Rfx3_Rfx1_Rfx4	ENSMUST00000061878.5|Klhdc9|ENSMUSG00000045259.5|kelch domain containing 9
mm39_v1_chr11_-_3845085_3845104	0.976377	Rfx3_Rfx1_Rfx4	ENSMUST00000020712.5|4921536K21Rik|ENSMUSG00000020434.5|RIKEN cDNA 4921536K21 gene
mm39_v1_chr3_+_29136449_29136449	0.974994	Rfx3_Rfx1_Rfx4	ENSMUST00000146943.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1
mm39_v1_chr9_-_14682300_14682340	0.970894	Rfx3_Rfx1_Rfx4	ENSMUST00000191047.7|1700012B09Rik|ENSMUSG00000031927.10|RIKEN cDNA 1700012B09 gene	ENSMUST00000060330.5|1700012B09Rik|ENSMUSG00000031927.10|RIKEN cDNA 1700012B09 gene
mm39_v1_chr3_+_82265474_82265494	0.970047	Rfx3_Rfx1_Rfx4	ENSMUST00000195471.6|Map9|ENSMUSG00000033900.14|microtubule-associated protein 9	ENSMUST00000195640.2|Map9|ENSMUSG00000033900.14|microtubule-associated protein 9
mm39_v1_chr15_-_79543090_79543157	0.969824	Rfx3_Rfx1_Rfx4	ENSMUST00000109648.9|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A
mm39_v1_chr13_-_92620507_92620547	0.96696	Rfx3_Rfx1_Rfx4	ENSMUST00000040106.9|Fam151b|ENSMUSG00000034334.9|family with sequence similarity 151, member B
mm39_v1_chr6_+_149043011_149043124	0.962405	Rfx3_Rfx1_Rfx4	ENSMUST00000179873.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000047531.16|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111548.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111547.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000134306.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000147934.4|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr14_-_55880708_55880840	0.961669	Rfx3_Rfx1_Rfx4	ENSMUST00000120041.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000121937.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000133707.2|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000002391.15|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000121791.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1
mm39_v1_chr10_+_74873121_74873162	0.960374	Rfx3_Rfx1_Rfx4	ENSMUST00000139384.9|Rab36|ENSMUSG00000020175.16|RAB36, member RAS oncogene family
mm39_v1_chr14_-_31362909_31362928	0.9579	Rfx3_Rfx1_Rfx4	ENSMUST00000022437.16|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1
mm39_v1_chr7_-_140462221_140462244	0.953599	Rfx3_Rfx1_Rfx4	ENSMUST00000026559.14|Sirt3|ENSMUSG00000025486.18|sirtuin 3
mm39_v1_chr10_+_126899396_126899407	0.952744	Rfx3_Rfx1_Rfx4	ENSMUST00000006911.12|Cdk4|ENSMUSG00000006728.13|cyclin-dependent kinase 4
mm39_v1_chr11_-_48707763_48707788	0.951722	Rfx3_Rfx1_Rfx4	ENSMUST00000140800.2|Trim41|ENSMUSG00000040365.15|tripartite motif-containing 41
mm39_v1_chr5_-_137015683_137015755	0.949964	Rfx3_Rfx1_Rfx4	ENSMUST00000034953.14|Znhit1|ENSMUSG00000059518.15|zinc finger, HIT domain containing 1	ENSMUST00000085941.12|Znhit1|ENSMUSG00000059518.15|zinc finger, HIT domain containing 1
mm39_v1_chr10_+_86541675_86541742	0.949125	Rfx3_Rfx1_Rfx4	ENSMUST00000075632.14|Ttc41|ENSMUSG00000044937.16|tetratricopeptide repeat domain 41	ENSMUST00000217747.2|Ttc41|ENSMUSG00000044937.16|tetratricopeptide repeat domain 41	ENSMUST00000061458.9|Ttc41|ENSMUSG00000044937.16|tetratricopeptide repeat domain 41
mm39_v1_chr17_+_35056219_35056375	0.940355	Rfx3_Rfx1_Rfx4	ENSMUST00000173995.2|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease	ENSMUST00000174092.8|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease
mm39_v1_chr11_-_83193412_83193463	0.937717	Rfx3_Rfx1_Rfx4	ENSMUST00000176374.2|Pex12|ENSMUSG00000018733.11|peroxisomal biogenesis factor 12
mm39_v1_chr19_-_10434837_10434922	0.936297	Rfx3_Rfx1_Rfx4	ENSMUST00000171400.4|Lrrc10b|ENSMUSG00000090291.4|leucine rich repeat containing 10B
mm39_v1_chr4_+_57434247_57434369	0.935171	Rfx3_Rfx1_Rfx4	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr11_-_59730569_59730653	0.93228	Rfx3_Rfx1_Rfx4	ENSMUST00000141415.2|Cops3|ENSMUSG00000019373.12|COP9 signalosome subunit 3
mm39_v1_chr12_+_80565764_80565861	0.927454	Rfx3_Rfx1_Rfx4	ENSMUST00000021558.8|Galnt16|ENSMUSG00000021130.9|polypeptide N-acetylgalactosaminyltransferase 16
mm39_v1_chr10_+_41366433_41366481	0.926921	Rfx3_Rfx1_Rfx4	ENSMUST00000105507.5|Ppil6|ENSMUSG00000078451.6|peptidylprolyl isomerase (cyclophilin)-like 6
mm39_v1_chr14_+_75879689_75879699	0.926391	Rfx3_Rfx1_Rfx4	ENSMUST00000238633.2|Erich6b|ENSMUSG00000022002.3|glutamate rich 6B	ENSMUST00000022579.2|Erich6b|ENSMUSG00000022002.3|glutamate rich 6B
mm39_v1_chr17_+_36290743_36290816	0.925662	Rfx3_Rfx1_Rfx4	ENSMUST00000087200.4|Gnl1|ENSMUSG00000024429.10|guanine nucleotide binding protein-like 1
mm39_v1_chr9_-_15539193_15539229	0.92523	Rfx3_Rfx1_Rfx4	ENSMUST00000045513.13|Deup1|ENSMUSG00000039977.17|deuterosome assembly protein 1	ENSMUST00000152377.2|Deup1|ENSMUSG00000039977.17|deuterosome assembly protein 1	ENSMUST00000115593.10|Deup1|ENSMUSG00000039977.17|deuterosome assembly protein 1
mm39_v1_chr17_-_45903410_45903427	0.924799	Rfx3_Rfx1_Rfx4	ENSMUST00000166119.8|Slc29a1|ENSMUSG00000023942.16|solute carrier family 29 (nucleoside transporters), member 1
mm39_v1_chr15_+_77483458_77483458	0.9235	Rfx3_Rfx1_Rfx4	ENSMUST00000230670.2|Gm36245|ENSMUSG00000116079.2|predicted gene, 36245
mm39_v1_chr19_-_6919755_6919818	0.921561	Rfx3_Rfx1_Rfx4	ENSMUST00000099782.10|Gpr137|ENSMUSG00000024958.14|G protein-coupled receptor 137
mm39_v1_chr6_+_48570817_48570834	0.919908	Rfx3_Rfx1_Rfx4	ENSMUST00000154010.8|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000009420.15|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000163452.7|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000118229.2|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000135151.3|Repin1|ENSMUSG00000052751.17|replication initiator 1
mm39_v1_chr3_+_154799163_154799185	0.918854	Rfx3_Rfx1_Rfx4	ENSMUST00000192383.6|Lrriq3|ENSMUSG00000028182.15|leucine-rich repeats and IQ motif containing 3
mm39_v1_chr5_+_66417233_66417255	0.918348	Rfx3_Rfx1_Rfx4	ENSMUST00000202994.4|Nsun7|ENSMUSG00000029206.14|NOL1/NOP2/Sun domain family, member 7	ENSMUST00000201100.4|Nsun7|ENSMUSG00000029206.14|NOL1/NOP2/Sun domain family, member 7
mm39_v1_chr11_-_62622691_62622736	0.913154	Rfx3_Rfx1_Rfx4	ENSMUST00000150336.8|Zfp287|ENSMUSG00000005267.14|zinc finger protein 287
mm39_v1_chr7_+_6175481_6175530	0.912789	Rfx3_Rfx1_Rfx4	ENSMUST00000108567.9|Zfp444|ENSMUSG00000044876.16|zinc finger protein 444	ENSMUST00000207176.2|Zfp444|ENSMUSG00000044876.16|zinc finger protein 444	ENSMUST00000054680.12|Zfp444|ENSMUSG00000044876.16|zinc finger protein 444	ENSMUST00000108566.8|Zfp444|ENSMUSG00000044876.16|zinc finger protein 444
mm39_v1_chr8_-_71834543_71834621	0.910728	Rfx3_Rfx1_Rfx4	ENSMUST00000002466.9|Nr2f6|ENSMUSG00000002393.15|nuclear receptor subfamily 2, group F, member 6
mm39_v1_chr6_+_34757771_34757854	0.905553	Rfx3_Rfx1_Rfx4	ENSMUST00000115012.8|Agbl3|ENSMUSG00000038836.16|ATP/GTP binding protein-like 3	ENSMUST00000115014.8|Agbl3|ENSMUSG00000038836.16|ATP/GTP binding protein-like 3	ENSMUST00000115009.2|Agbl3|ENSMUSG00000038836.16|ATP/GTP binding protein-like 3
mm39_v1_chr5_+_149363168_149363186	0.900626	Rfx3_Rfx1_Rfx4	ENSMUST00000201683.4|Tex26|ENSMUSG00000029660.11|testis expressed 26	ENSMUST00000202920.4|Tex26|ENSMUSG00000029660.11|testis expressed 26
mm39_v1_chr14_-_31362835_31362907	0.89786	Rfx3_Rfx1_Rfx4	ENSMUST00000167066.8|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1	ENSMUST00000127204.9|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1
mm39_v1_chr4_+_140941259_140941309	0.894986	Rfx3_Rfx1_Rfx4	ENSMUST00000097813.3|Cplane2|ENSMUSG00000073733.5|ciliogenesis and planar polarity effector 2
mm39_v1_chr7_-_12514534_12514606	0.89106	Rfx3_Rfx1_Rfx4	ENSMUST00000211392.2|Zscan18|ENSMUSG00000070822.6|zinc finger and SCAN domain containing 18
mm39_v1_chr2_+_153003212_153003227	0.888905	Rfx3_Rfx1_Rfx4	ENSMUST00000089027.3|Tm9sf4|ENSMUSG00000068040.11|transmembrane 9 superfamily member 4
mm39_v1_chrX_+_73880802_73880802	0.888872	Rfx3_Rfx1_Rfx4	ENSMUST00000114116.2|Pwwp4d|ENSMUSG00000079531.2|PWWP domain containing 4D
mm39_v1_chr1_-_75156993_75157052	0.888082	Rfx3_Rfx1_Rfx4	ENSMUST00000027396.15|Abcb6|ENSMUSG00000026198.16|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm39_v1_chr4_-_62326853_62326896	0.883021	Rfx3_Rfx1_Rfx4	ENSMUST00000107459.2|Cdc26|ENSMUSG00000066149.12|cell division cycle 26	ENSMUST00000084525.12|Cdc26|ENSMUSG00000066149.12|cell division cycle 26
mm39_v1_chr2_-_75768752_75768929	0.878602	Rfx3_Rfx1_Rfx4	ENSMUST00000099996.5|Ttc30b|ENSMUSG00000075273.5|tetratricopeptide repeat domain 30B
mm39_v1_chr15_+_79025523_79025558	0.878111	Rfx3_Rfx1_Rfx4	ENSMUST00000040077.8|Polr2f|ENSMUSG00000033020.8|polymerase (RNA) II (DNA directed) polypeptide F
mm39_v1_chr3_-_54962458_54962476	0.872707	Rfx3_Rfx1_Rfx4	ENSMUST00000199352.2|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000198320.5|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000029368.7|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr9_+_21914334_21914362	0.871977	Rfx3_Rfx1_Rfx4	ENSMUST00000115331.10|Prkcsh|ENSMUSG00000003402.15|protein kinase C substrate 80K-H
mm39_v1_chr11_+_72098363_72098446	0.869791	Rfx3_Rfx1_Rfx4	ENSMUST00000021158.4|Txndc17|ENSMUSG00000020803.4|thioredoxin domain containing 17
mm39_v1_chr17_-_56424265_56424298	0.868846	Rfx3_Rfx1_Rfx4	ENSMUST00000113072.3|Plin5|ENSMUSG00000011305.12|perilipin 5
mm39_v1_chr15_-_33687986_33688030	0.868332	Rfx3_Rfx1_Rfx4	ENSMUST00000042021.5|Tspyl5|ENSMUSG00000038984.5|testis-specific protein, Y-encoded-like 5
mm39_v1_chr3_-_57754901_57755021	0.866506	Rfx3_Rfx1_Rfx4	ENSMUST00000120289.3|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr16_-_93400691_93400703	0.865917	Rfx3_Rfx1_Rfx4	ENSMUST00000023669.14|Setd4|ENSMUSG00000022948.17|SET domain containing 4	ENSMUST00000233931.2|Setd4|ENSMUSG00000022948.17|SET domain containing 4	ENSMUST00000154355.3|Setd4|ENSMUSG00000022948.17|SET domain containing 4
mm39_v1_chr5_+_77163869_77163903	0.865264	Rfx3_Rfx1_Rfx4	ENSMUST00000031161.11|Thegl|ENSMUSG00000029248.15|theg spermatid protein like	ENSMUST00000117880.8|Thegl|ENSMUSG00000029248.15|theg spermatid protein like
mm39_v1_chr8_+_106554353_106554401	0.862301	Rfx3_Rfx1_Rfx4	ENSMUST00000212566.2|Tsnaxip1|ENSMUSG00000031893.8|translin-associated factor X (Tsnax) interacting protein 1	ENSMUST00000034365.5|Tsnaxip1|ENSMUSG00000031893.8|translin-associated factor X (Tsnax) interacting protein 1
mm39_v1_chr4_+_122910382_122910406	0.860911	Rfx3_Rfx1_Rfx4	ENSMUST00000102649.4|Trit1|ENSMUSG00000028653.17|tRNA isopentenyltransferase 1
mm39_v1_chr10_+_87694924_87694935	0.860847	Rfx3_Rfx1_Rfx4	ENSMUST00000095360.11|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr11_-_101315345_101315622	0.859993	Rfx3_Rfx1_Rfx4	ENSMUST00000107257.8|Gm27029|ENSMUSG00000097239.8|predicted gene, 27029	ENSMUST00000107252.9|Ptges3l|ENSMUSG00000097487.8|prostaglandin E synthase 3 like	ENSMUST00000093933.11|Ptges3l|ENSMUSG00000097487.8|prostaglandin E synthase 3 like	ENSMUST00000107259.4|Gm27029|ENSMUSG00000097239.8|predicted gene, 27029
mm39_v1_chr3_+_99792699_99792735	0.858758	Rfx3_Rfx1_Rfx4	ENSMUST00000164539.2|Spag17|ENSMUSG00000027867.11|sperm associated antigen 17
mm39_v1_chr16_-_36695166_36695224	0.857421	Rfx3_Rfx1_Rfx4	ENSMUST00000075946.12|Eaf2|ENSMUSG00000022838.15|ELL associated factor 2
mm39_v1_chr4_+_45890303_45890342	0.855863	Rfx3_Rfx1_Rfx4	ENSMUST00000178561.8|Ccdc180|ENSMUSG00000035539.15|coiled-coil domain containing 180
mm39_v1_chr14_-_55880980_55881058	0.855089	Rfx3_Rfx1_Rfx4	ENSMUST00000132338.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1
mm39_v1_chr7_+_44506731_44506778	0.852484	Rfx3_Rfx1_Rfx4	ENSMUST00000098478.7|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase
mm39_v1_chr8_+_96260694_96260752	0.851045	Rfx3_Rfx1_Rfx4	ENSMUST00000041569.5|Ccdc113|ENSMUSG00000036598.5|coiled-coil domain containing 113
mm39_v1_chr15_+_75865604_75865680	0.846362	Rfx3_Rfx1_Rfx4	ENSMUST00000089669.6|Mapk15|ENSMUSG00000063704.14|mitogen-activated protein kinase 15
mm39_v1_chr7_-_79882313_79882383	0.844256	Rfx3_Rfx1_Rfx4	ENSMUST00000206084.2|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)	ENSMUST00000205996.2|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)	ENSMUST00000071457.12|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)
mm39_v1_chr5_+_124250360_124250420	0.844239	Rfx3_Rfx1_Rfx4	ENSMUST00000024470.13|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000119269.6|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000196627.5|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000199457.5|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000198505.2|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm39_v1_chr3_+_154799063_154799078	0.841393	Rfx3_Rfx1_Rfx4	ENSMUST00000029833.13|Lrriq3|ENSMUSG00000028182.15|leucine-rich repeats and IQ motif containing 3
mm39_v1_chr19_+_47167444_47167465	0.836365	Rfx3_Rfx1_Rfx4	ENSMUST00000235326.2|Neurl1a|ENSMUSG00000006435.17|neuralized E3 ubiquitin protein ligase 1A
mm39_v1_chr6_-_126898768_126898802	0.83566	Rfx3_Rfx1_Rfx4	ENSMUST00000078521.7|Dyrk4|ENSMUSG00000030345.17|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4
mm39_v1_chrX_+_135894030_135894057	0.835175	Rfx3_Rfx1_Rfx4	ENSMUST00000033804.5|Zcchc18|ENSMUSG00000031428.12|zinc finger, CCHC domain containing 18
mm39_v1_chr4_-_106474429_106474437	0.834189	Rfx3_Rfx1_Rfx4	ENSMUST00000189032.7|Lexm|ENSMUSG00000054362.10|lymphocyte expansion molecule	ENSMUST00000106788.2|Lexm|ENSMUSG00000054362.10|lymphocyte expansion molecule
mm39_v1_chr8_+_72973560_72973636	0.828385	Rfx3_Rfx1_Rfx4	ENSMUST00000003123.10|Fam32a|ENSMUSG00000003039.10|family with sequence similarity 32, member A
mm39_v1_chr9_+_59485475_59485620	0.823248	Rfx3_Rfx1_Rfx4	ENSMUST00000118549.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000034840.10|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr3_+_29136172_29136172	0.819983	Rfx3_Rfx1_Rfx4	ENSMUST00000124809.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1
mm39_v1_chr15_+_102240134_102240216	0.818575	Rfx3_Rfx1_Rfx4	ENSMUST00000113682.9|Myg1|ENSMUSG00000001285.13|melanocyte proliferating gene 1	ENSMUST00000001331.13|Myg1|ENSMUSG00000001285.13|melanocyte proliferating gene 1	ENSMUST00000171244.2|Myg1|ENSMUSG00000001285.13|melanocyte proliferating gene 1
mm39_v1_chr5_+_149363114_149363129	0.81738	Rfx3_Rfx1_Rfx4	ENSMUST00000031667.8|Tex26|ENSMUSG00000029660.11|testis expressed 26
mm39_v1_chr8_+_85786684_85786716	0.816273	Rfx3_Rfx1_Rfx4	ENSMUST00000095220.4|Fbxw9|ENSMUSG00000008167.15|F-box and WD-40 domain protein 9
mm39_v1_chr7_+_126447080_126447134	0.814687	Rfx3_Rfx1_Rfx4	ENSMUST00000147257.2|Doc2a|ENSMUSG00000052301.15|double C2, alpha	ENSMUST00000139174.2|Doc2a|ENSMUSG00000052301.15|double C2, alpha
mm39_v1_chr11_-_87249837_87249901	0.814273	Rfx3_Rfx1_Rfx4	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr17_-_36014863_36014887	0.813822	Rfx3_Rfx1_Rfx4	ENSMUST00000148065.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr6_-_90405377_90405440	0.812002	Rfx3_Rfx1_Rfx4	ENSMUST00000135757.3|Cfap100|ENSMUSG00000048794.15|cilia and flagella associated protein 100	ENSMUST00000165673.5|Cfap100|ENSMUSG00000048794.15|cilia and flagella associated protein 100	ENSMUST00000062750.12|Cfap100|ENSMUSG00000048794.15|cilia and flagella associated protein 100	ENSMUST00000127508.4|Cfap100|ENSMUSG00000048794.15|cilia and flagella associated protein 100
mm39_v1_chr6_-_115815373_115815373	0.810159	Rfx3_Rfx1_Rfx4	ENSMUST00000032468.12|Efcab12|ENSMUSG00000030321.16|EF-hand calcium binding domain 12	ENSMUST00000184428.6|Efcab12|ENSMUSG00000030321.16|EF-hand calcium binding domain 12
mm39_v1_chr1_+_24717968_24718018	0.80728	Rfx3_Rfx1_Rfx4	ENSMUST00000095062.10|Lmbrd1|ENSMUSG00000073725.9|LMBR1 domain containing 1
mm39_v1_chr9_-_64248570_64248594	0.804434	Rfx3_Rfx1_Rfx4	ENSMUST00000068367.14|Dis3l|ENSMUSG00000032396.18|DIS3 like exosome 3'-5' exoribonuclease
mm39_v1_chr7_-_4687916_4688067	0.802361	Rfx3_Rfx1_Rfx4	ENSMUST00000206306.2|Hspbp1|ENSMUSG00000063802.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	ENSMUST00000205952.2|Hspbp1|ENSMUSG00000063802.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	ENSMUST00000079970.6|Hspbp1|ENSMUSG00000063802.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm39_v1_chr17_-_34243608_34243654	0.801832	Rfx3_Rfx1_Rfx4	ENSMUST00000025183.9|Ring1|ENSMUSG00000024325.9|ring finger protein 1
mm39_v1_chr12_-_103871146_103871161	0.800488	Rfx3_Rfx1_Rfx4	ENSMUST00000074051.6|Serpina1c|ENSMUSG00000079015.3|serine (or cysteine) peptidase inhibitor, clade A, member 1C
mm39_v1_chr1_+_160970276_160970337	0.799878	Rfx3_Rfx1_Rfx4	ENSMUST00000111608.8|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45	ENSMUST00000052245.9|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45
mm39_v1_chr7_-_44398041_44398041	0.797084	Rfx3_Rfx1_Rfx4	ENSMUST00000060270.13|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473
mm39_v1_chr1_+_83137457_83137502	0.796021	Rfx3_Rfx1_Rfx4	ENSMUST00000065436.10|Daw1|ENSMUSG00000053161.17|dynein assembly factor with WDR repeat domains 1	ENSMUST00000113436.8|Daw1|ENSMUSG00000053161.17|dynein assembly factor with WDR repeat domains 1	ENSMUST00000065403.7|Daw1|ENSMUSG00000053161.17|dynein assembly factor with WDR repeat domains 1
mm39_v1_chr11_+_75890738_75890773	0.7946	Rfx3_Rfx1_Rfx4	ENSMUST00000066408.6|1700016K19Rik|ENSMUSG00000053783.6|RIKEN cDNA 1700016K19 gene
mm39_v1_chr9_+_21914296_21914325	0.791715	Rfx3_Rfx1_Rfx4	ENSMUST00000003493.9|Prkcsh|ENSMUSG00000003402.15|protein kinase C substrate 80K-H
mm39_v1_chr7_-_12788592_12788691	0.79118	Rfx3_Rfx1_Rfx4	ENSMUST00000182515.8|Mzf1|ENSMUSG00000030380.18|myeloid zinc finger 1	ENSMUST00000069289.15|Mzf1|ENSMUSG00000030380.18|myeloid zinc finger 1
mm39_v1_chr4_-_155170738_155170836	0.790167	Rfx3_Rfx1_Rfx4	ENSMUST00000030914.4|Rer1|ENSMUSG00000029048.4|retention in endoplasmic reticulum sorting receptor 1
mm39_v1_chr2_+_152804405_152804430	0.788357	Rfx3_Rfx1_Rfx4	ENSMUST00000099197.9|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9	ENSMUST00000103155.10|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9
mm39_v1_chr5_-_92190489_92190560	0.784906	Rfx3_Rfx1_Rfx4	ENSMUST00000113140.5|Cdkl2|ENSMUSG00000029403.15|cyclin-dependent kinase-like 2 (CDC2-related kinase)	ENSMUST00000113143.8|Cdkl2|ENSMUSG00000029403.15|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm39_v1_chr19_-_46314945_46315047	0.780832	Rfx3_Rfx1_Rfx4	ENSMUST00000225781.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000223903.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing
mm39_v1_chr3_+_29136882_29136920	0.779493	Rfx3_Rfx1_Rfx4	ENSMUST00000119598.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1	ENSMUST00000118531.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1
mm39_v1_chr11_-_89587671_89587711	0.779151	Rfx3_Rfx1_Rfx4	ENSMUST00000128717.9|Ankfn1|ENSMUSG00000047773.16|ankyrin-repeat and fibronectin type III domain containing 1
mm39_v1_chr6_-_138635447_138635542	0.773365	Rfx3_Rfx1_Rfx4	ENSMUST00000054786.6|Igbp1b|ENSMUSG00000046717.6|immunoglobulin (CD79A) binding protein 1b
mm39_v1_chr16_-_59459745_59459806	0.768536	Rfx3_Rfx1_Rfx4	ENSMUST00000099646.10|Arl6|ENSMUSG00000022722.19|ADP-ribosylation factor-like 6
mm39_v1_chr7_+_139474612_139474770	0.768013	Rfx3_Rfx1_Rfx4	ENSMUST00000053445.18|Kndc1|ENSMUSG00000066129.18|kinase non-catalytic C-lobe domain (KIND) containing 1	ENSMUST00000121839.2|Kndc1|ENSMUSG00000066129.18|kinase non-catalytic C-lobe domain (KIND) containing 1
mm39_v1_chr8_-_27692570_27692584	0.763567	Rfx3_Rfx1_Rfx4	ENSMUST00000038174.8|Got1l1|ENSMUSG00000039720.8|glutamic-oxaloacetic transaminase 1-like 1
mm39_v1_chr5_-_21629661_21629684	0.760814	Rfx3_Rfx1_Rfx4	ENSMUST00000115245.8|Ccdc146|ENSMUSG00000064280.15|coiled-coil domain containing 146	ENSMUST00000030552.7|Ccdc146|ENSMUSG00000064280.15|coiled-coil domain containing 146
mm39_v1_chr12_+_29578354_29578468	0.759789	Rfx3_Rfx1_Rfx4	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr9_-_29323500_29323574	0.75654	Rfx3_Rfx1_Rfx4	ENSMUST00000115237.8|Ntm|ENSMUSG00000059974.11|neurotrimin
mm39_v1_chr2_+_70339832_70339846	0.752104	Rfx3_Rfx1_Rfx4	ENSMUST00000153121.2|Erich2|ENSMUSG00000075302.11|glutamate rich 2
mm39_v1_chr5_-_92823111_92823150	0.750884	Rfx3_Rfx1_Rfx4	ENSMUST00000151180.8|Ccdc158|ENSMUSG00000050050.18|coiled-coil domain containing 158	ENSMUST00000150359.2|Ccdc158|ENSMUSG00000050050.18|coiled-coil domain containing 158
mm39_v1_chr9_-_24607554_24607603	0.750736	Rfx3_Rfx1_Rfx4	ENSMUST00000133010.4|Dpy19l2|ENSMUSG00000085576.4|dpy-19-like 2 (C. elegans)
mm39_v1_chr17_+_85928244_85928270	0.750635	Rfx3_Rfx1_Rfx4	ENSMUST00000176081.3|Six3|ENSMUSG00000038805.11|sine oculis-related homeobox 3
mm39_v1_chr11_-_101169753_101169940	0.749644	Rfx3_Rfx1_Rfx4	ENSMUST00000168089.2|Coa3|ENSMUSG00000017188.4|cytochrome C oxidase assembly factor 3	ENSMUST00000017332.4|Coa3|ENSMUSG00000017188.4|cytochrome C oxidase assembly factor 3
mm39_v1_chr19_+_4905158_4905298	0.745494	Rfx3_Rfx1_Rfx4	ENSMUST00000119694.3|Ctsf|ENSMUSG00000083282.4|cathepsin F	ENSMUST00000237504.2|Ctsf|ENSMUSG00000083282.4|cathepsin F	ENSMUST00000237011.2|Ctsf|ENSMUSG00000083282.4|cathepsin F
mm39_v1_chr17_-_45903188_45903337	0.745453	Rfx3_Rfx1_Rfx4	ENSMUST00000164769.8|Slc29a1|ENSMUSG00000023942.16|solute carrier family 29 (nucleoside transporters), member 1
mm39_v1_chr9_+_21914083_21914114	0.743992	Rfx3_Rfx1_Rfx4	ENSMUST00000216344.2|Prkcsh|ENSMUSG00000003402.15|protein kinase C substrate 80K-H
mm39_v1_chr18_+_84970235_84970256	0.742417	Rfx3_Rfx1_Rfx4	ENSMUST00000223789.3|Fbxo15|ENSMUSG00000034391.13|F-box protein 15
mm39_v1_chr11_-_61344818_61344932	0.742369	Rfx3_Rfx1_Rfx4	ENSMUST00000060255.14|Rnf112|ENSMUSG00000010086.18|ring finger protein 112	ENSMUST00000054927.14|Rnf112|ENSMUSG00000010086.18|ring finger protein 112	ENSMUST00000102661.4|Rnf112|ENSMUSG00000010086.18|ring finger protein 112
mm39_v1_chr1_+_93096316_93096447	0.740512	Rfx3_Rfx1_Rfx4	ENSMUST00000138595.3|Crocc2|ENSMUSG00000084989.4|ciliary rootlet coiled-coil, rootletin family member 2
mm39_v1_chr9_+_99333474_99333528	0.740496	Rfx3_Rfx1_Rfx4	ENSMUST00000163199.5|Nme9|ENSMUSG00000046242.9|NME/NM23 family member 9
mm39_v1_chr10_+_42736644_42736673	0.739675	Rfx3_Rfx1_Rfx4	ENSMUST00000105495.8|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr5_-_92822984_92823006	0.739496	Rfx3_Rfx1_Rfx4	ENSMUST00000060930.10|Ccdc158|ENSMUSG00000050050.18|coiled-coil domain containing 158
mm39_v1_chr5_-_113369096_113369107	0.73559	Rfx3_Rfx1_Rfx4	ENSMUST00000211733.2|2900026A02Rik|ENSMUSG00000051339.11|RIKEN cDNA 2900026A02 gene
mm39_v1_chr6_-_39702127_39702288	0.734569	Rfx3_Rfx1_Rfx4	ENSMUST00000101497.4|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr11_-_6556053_6556053	0.734361	Rfx3_Rfx1_Rfx4	ENSMUST00000045713.4|Nacad|ENSMUSG00000041073.11|NAC alpha domain containing
mm39_v1_chr7_-_18883113_18883216	0.733895	Rfx3_Rfx1_Rfx4	ENSMUST00000032566.3|Qpctl|ENSMUSG00000030407.3|glutaminyl-peptide cyclotransferase-like
mm39_v1_chr11_+_70453724_70453748	0.731936	Rfx3_Rfx1_Rfx4	ENSMUST00000102559.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr17_-_35191127_35191132	0.731042	Rfx3_Rfx1_Rfx4	ENSMUST00000087328.4|Hspa1a|ENSMUSG00000091971.4|heat shock protein 1A
mm39_v1_chr12_-_103829810_103829889	0.729977	Rfx3_Rfx1_Rfx4	ENSMUST00000085056.8|Serpina1a|ENSMUSG00000066366.15|serine (or cysteine) peptidase inhibitor, clade A, member 1A	ENSMUST00000072876.12|Serpina1a|ENSMUSG00000066366.15|serine (or cysteine) peptidase inhibitor, clade A, member 1A	ENSMUST00000124717.2|Serpina1a|ENSMUSG00000066366.15|serine (or cysteine) peptidase inhibitor, clade A, member 1A
mm39_v1_chr10_-_128204545_128204560	0.729894	Rfx3_Rfx1_Rfx4	ENSMUST00000220027.2|Coq10a|ENSMUSG00000039914.7|coenzyme Q10A
mm39_v1_chr8_+_110220614_110220659	0.729446	Rfx3_Rfx1_Rfx4	ENSMUST00000034162.8|Pmfbp1|ENSMUSG00000031727.9|polyamine modulated factor 1 binding protein 1
mm39_v1_chrX_+_10118544_10118596	0.728108	Rfx3_Rfx1_Rfx4	ENSMUST00000049910.13|Otc|ENSMUSG00000031173.14|ornithine transcarbamylase
mm39_v1_chr7_+_44397837_44397984	0.723351	Rfx3_Rfx1_Rfx4	ENSMUST00000002275.15|Vrk3|ENSMUSG00000002205.17|vaccinia related kinase 3
mm39_v1_chr1_+_84817547_84817604	0.720955	Rfx3_Rfx1_Rfx4	ENSMUST00000097672.4|Fbxo36|ENSMUSG00000073633.10|F-box protein 36
mm39_v1_chr7_-_30234481_30234491	0.720488	Rfx3_Rfx1_Rfx4	ENSMUST00000207858.2|Arhgap33|ENSMUSG00000036882.8|Rho GTPase activating protein 33
mm39_v1_chr17_+_34848507_34848594	0.718244	Rfx3_Rfx1_Rfx4	ENSMUST00000015620.7|Prrt1|ENSMUSG00000015476.7|proline-rich transmembrane protein 1
mm39_v1_chr12_-_84408576_84408612	0.716482	Rfx3_Rfx1_Rfx4	ENSMUST00000021659.2|Fam161b|ENSMUSG00000021234.10|family with sequence similarity 161, member B	ENSMUST00000065536.9|Fam161b|ENSMUSG00000021234.10|family with sequence similarity 161, member B
mm39_v1_chr17_-_56381966_56382034	0.715106	Rfx3_Rfx1_Rfx4	ENSMUST00000019722.12|Ubxn6|ENSMUSG00000019578.12|UBX domain protein 6
mm39_v1_chr11_+_101442961_101443011	0.713122	Rfx3_Rfx1_Rfx4	ENSMUST00000103099.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor
mm39_v1_chr15_-_75620060_75620087	0.712646	Rfx3_Rfx1_Rfx4	ENSMUST00000062002.6|Mafa|ENSMUSG00000047591.6|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)
mm39_v1_chr11_+_72105964_72105964	0.711693	Rfx3_Rfx1_Rfx4	ENSMUST00000066087.5|4930563E22Rik|ENSMUSG00000053574.6|RIKEN cDNA 4930563E22 gene
mm39_v1_chr10_+_80131764_80131830	0.71111	Rfx3_Rfx1_Rfx4	ENSMUST00000105359.8|Apc2|ENSMUSG00000020135.14|APC regulator of WNT signaling pathway 2
mm39_v1_chr16_+_38722666_38722678	0.710306	Rfx3_Rfx1_Rfx4	ENSMUST00000023478.8|Igsf11|ENSMUSG00000022790.15|immunoglobulin superfamily, member 11
mm39_v1_chr9_+_72892786_72892849	0.707565	Rfx3_Rfx1_Rfx4	ENSMUST00000156879.8|Ccpg1|ENSMUSG00000034563.17|cell cycle progression 1
mm39_v1_chr10_+_86893907_86893931	0.705435	Rfx3_Rfx1_Rfx4	ENSMUST00000189456.7|1700113H08Rik|ENSMUSG00000047129.12|RIKEN cDNA 1700113H08 gene	ENSMUST00000169849.3|1700113H08Rik|ENSMUSG00000047129.12|RIKEN cDNA 1700113H08 gene
mm39_v1_chr16_-_38162174_38162220	0.70419	Rfx3_Rfx1_Rfx4	ENSMUST00000114740.3|Cfap91|ENSMUSG00000022805.18|cilia and flagella associated protein 91
mm39_v1_chr15_+_88703786_88703891	0.703443	Rfx3_Rfx1_Rfx4	ENSMUST00000024042.5|Creld2|ENSMUSG00000023272.5|cysteine-rich with EGF-like domains 2
mm39_v1_chr8_+_120301974_120302079	0.699228	Rfx3_Rfx1_Rfx4	ENSMUST00000093100.3|Dnaaf1|ENSMUSG00000031831.7|dynein, axonemal assembly factor 1
mm39_v1_chr7_+_44506561_44506614	0.697581	Rfx3_Rfx1_Rfx4	ENSMUST00000107876.8|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase	ENSMUST00000154968.2|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase	ENSMUST00000003044.14|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase
mm39_v1_chr17_+_27904155_27904213	0.697577	Rfx3_Rfx1_Rfx4	ENSMUST00000231669.2|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1	ENSMUST00000097360.3|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1	ENSMUST00000231236.2|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1
mm39_v1_chr1_+_165288606_165288606	0.695466	Rfx3_Rfx1_Rfx4	ENSMUST00000027853.6|Mpc2|ENSMUSG00000026568.7|mitochondrial pyruvate carrier 2
mm39_v1_chr8_+_110993592_110993615	0.693846	Rfx3_Rfx1_Rfx4	ENSMUST00000043141.7|Hydin|ENSMUSG00000059854.9|HYDIN, axonemal central pair apparatus protein
mm39_v1_chr15_-_79542950_79543001	0.693327	Rfx3_Rfx1_Rfx4	ENSMUST00000109646.9|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A	ENSMUST00000187519.7|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A	ENSMUST00000229064.2|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A
mm39_v1_chr2_-_125993887_125993929	0.692042	Rfx3_Rfx1_Rfx4	ENSMUST00000110448.3|Fam227b|ENSMUSG00000027209.18|family with sequence similarity 227, member B	ENSMUST00000110446.9|Fam227b|ENSMUSG00000027209.18|family with sequence similarity 227, member B
mm39_v1_chr7_+_79392888_79392938	0.691493	Rfx3_Rfx1_Rfx4	ENSMUST00000035622.8|Wdr93|ENSMUSG00000039099.8|WD repeat domain 93
mm39_v1_chr7_-_83444026_83444049	0.690209	Rfx3_Rfx1_Rfx4	ENSMUST00000119134.8|Cfap161|ENSMUSG00000011154.18|cilia and flagella associated protein 161
mm39_v1_chr14_+_31363004_31363039	0.688834	Rfx3_Rfx1_Rfx4	ENSMUST00000090147.7|Btd|ENSMUSG00000021900.11|biotinidase
mm39_v1_chr3_-_88366159_88366205	0.687179	Rfx3_Rfx1_Rfx4	ENSMUST00000147200.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000169222.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr7_-_109038202_109038224	0.686149	Rfx3_Rfx1_Rfx4	ENSMUST00000121378.2|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33
mm39_v1_chr14_+_54491637_54491704	0.685935	Rfx3_Rfx1_Rfx4	ENSMUST00000180359.8|Abhd4|ENSMUSG00000040997.15|abhydrolase domain containing 4	ENSMUST00000199338.2|Abhd4|ENSMUSG00000040997.15|abhydrolase domain containing 4
mm39_v1_chr13_+_97274445_97274548	0.683844	Rfx3_Rfx1_Rfx4	ENSMUST00000160139.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000042084.13|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161639.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161913.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161825.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161929.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000022170.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2
mm39_v1_chr15_+_75576113_75576140	0.683182	Rfx3_Rfx1_Rfx4	ENSMUST00000121137.9|Rhpn1|ENSMUSG00000022580.14|rhophilin, Rho GTPase binding protein 1
mm39_v1_chr12_-_103704417_103704417	0.682296	Rfx3_Rfx1_Rfx4	ENSMUST00000095450.11|Serpina1b|ENSMUSG00000071178.12|serine (or cysteine) preptidase inhibitor, clade A, member 1B	ENSMUST00000187220.2|Serpina1b|ENSMUSG00000071178.12|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm39_v1_chr7_-_109092834_109092945	0.679637	Rfx3_Rfx1_Rfx4	ENSMUST00000106739.8|Trim66|ENSMUSG00000031026.16|tripartite motif-containing 66
mm39_v1_chr17_+_9207165_9207179	0.679398	Rfx3_Rfx1_Rfx4	ENSMUST00000024650.12|1700010I14Rik|ENSMUSG00000023873.14|RIKEN cDNA 1700010I14 gene
mm39_v1_chr11_+_101875095_101875115	0.676999	Rfx3_Rfx1_Rfx4	ENSMUST00000176722.8|Cfap97d1|ENSMUSG00000010841.14|CFAP97 domain containing 1	ENSMUST00000175972.2|Cfap97d1|ENSMUSG00000010841.14|CFAP97 domain containing 1
mm39_v1_chr6_+_83086021_83086095	0.67649	Rfx3_Rfx1_Rfx4	ENSMUST00000113938.5|Mrpl53|ENSMUSG00000030037.10|mitochondrial ribosomal protein L53
mm39_v1_chr13_-_120217380_120217445	0.675486	Rfx3_Rfx1_Rfx4	ENSMUST00000178142.2|Nim1k|ENSMUSG00000095930.2|NIM1 serine/threonine protein kinase
mm39_v1_chr7_-_109038282_109038291	0.673721	Rfx3_Rfx1_Rfx4	ENSMUST00000106745.9|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33	ENSMUST00000090414.11|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33	ENSMUST00000141210.2|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33
mm39_v1_chr16_+_43710299_43710310	0.671174	Rfx3_Rfx1_Rfx4	ENSMUST00000151183.2|Ccdc191|ENSMUSG00000022701.19|coiled-coil domain containing 191
mm39_v1_chr7_+_18810167_18810198	0.66961	Rfx3_Rfx1_Rfx4	ENSMUST00000108479.2|Dmwd|ENSMUSG00000030410.17|dystrophia myotonica-containing WD repeat motif
mm39_v1_chr6_+_126830102_126830123	0.669337	Rfx3_Rfx1_Rfx4	ENSMUST00000202878.4|Akap3|ENSMUSG00000030344.12|A kinase (PRKA) anchor protein 3	ENSMUST00000202574.2|Akap3|ENSMUSG00000030344.12|A kinase (PRKA) anchor protein 3
mm39_v1_chr8_-_96161414_96161458	0.669015	Rfx3_Rfx1_Rfx4	ENSMUST00000211908.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chr10_-_128204806_128204882	0.668714	Rfx3_Rfx1_Rfx4	ENSMUST00000043211.7|Coq10a|ENSMUSG00000039914.7|coenzyme Q10A	ENSMUST00000220227.2|Coq10a|ENSMUSG00000039914.7|coenzyme Q10A
mm39_v1_chr15_-_10558730_10558783	0.667519	Rfx3_Rfx1_Rfx4	ENSMUST00000167842.9|Ttc23l|ENSMUSG00000022249.15|tetratricopeptide repeat domain 23-like	ENSMUST00000022857.14|Ttc23l|ENSMUSG00000022249.15|tetratricopeptide repeat domain 23-like
mm39_v1_chr17_-_26056056_26056269	0.665027	Rfx3_Rfx1_Rfx4	ENSMUST00000183929.8|Rhbdl1|ENSMUSG00000025735.14|rhomboid like 1	ENSMUST00000184865.2|Rhbdl1|ENSMUSG00000025735.14|rhomboid like 1	ENSMUST00000026831.14|Rhbdl1|ENSMUSG00000025735.14|rhomboid like 1
mm39_v1_chr7_-_109037992_109038045	0.663313	Rfx3_Rfx1_Rfx4	ENSMUST00000121748.8|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33
mm39_v1_chrX_+_135893894_135893965	0.659123	Rfx3_Rfx1_Rfx4	ENSMUST00000113067.8|Zcchc18|ENSMUSG00000031428.12|zinc finger, CCHC domain containing 18	ENSMUST00000101227.3|Zcchc18|ENSMUSG00000031428.12|zinc finger, CCHC domain containing 18
mm39_v1_chr9_-_59260713_59260791	0.657677	Rfx3_Rfx1_Rfx4	ENSMUST00000026265.8|Bbs4|ENSMUSG00000025235.9|Bardet-Biedl syndrome 4 (human)
mm39_v1_chr4_-_124959395_124959496	0.655492	Rfx3_Rfx1_Rfx4	ENSMUST00000036383.4|Dnali1|ENSMUSG00000042707.7|dynein, axonemal, light intermediate polypeptide 1
mm39_v1_chr7_-_79882501_79882590	0.654294	Rfx3_Rfx1_Rfx4	ENSMUST00000065163.15|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)
mm39_v1_chr3_+_14011445_14011476	0.650826	Rfx3_Rfx1_Rfx4	ENSMUST00000192209.6|Ralyl|ENSMUSG00000039717.17|RALY RNA binding protein-like	ENSMUST00000171075.8|Ralyl|ENSMUSG00000039717.17|RALY RNA binding protein-like	ENSMUST00000108372.4|Ralyl|ENSMUSG00000039717.17|RALY RNA binding protein-like
mm39_v1_chr1_+_59563453_59563453	0.648296	Rfx3_Rfx1_Rfx4	ENSMUST00000186434.3|Gm973|ENSMUSG00000047361.17|predicted gene 973
mm39_v1_chr1_-_87438027_87438095	0.648184	Rfx3_Rfx1_Rfx4	ENSMUST00000027477.15|Ngef|ENSMUSG00000026259.15|neuronal guanine nucleotide exchange factor
mm39_v1_chr2_-_118087401_118087467	0.648137	Rfx3_Rfx1_Rfx4	ENSMUST00000231133.2|Fsip1|ENSMUSG00000027344.15|fibrous sheath-interacting protein 1	ENSMUST00000028820.7|Fsip1|ENSMUSG00000027344.15|fibrous sheath-interacting protein 1	ENSMUST00000028821.10|Fsip1|ENSMUSG00000027344.15|fibrous sheath-interacting protein 1
mm39_v1_chr10_-_80736579_80736803	0.648124	Rfx3_Rfx1_Rfx4	ENSMUST00000218481.2|Timm13|ENSMUSG00000020219.8|translocase of inner mitochondrial membrane 13	ENSMUST00000219896.2|Timm13|ENSMUSG00000020219.8|translocase of inner mitochondrial membrane 13	ENSMUST00000020440.7|Timm13|ENSMUSG00000020219.8|translocase of inner mitochondrial membrane 13
mm39_v1_chr7_-_83444050_83444095	0.642607	Rfx3_Rfx1_Rfx4	ENSMUST00000011298.14|Cfap161|ENSMUSG00000011154.18|cilia and flagella associated protein 161
mm39_v1_chr7_+_133378586_133378671	0.64066	Rfx3_Rfx1_Rfx4	ENSMUST00000065359.12|Fank1|ENSMUSG00000053111.14|fibronectin type 3 and ankyrin repeat domains 1	ENSMUST00000209511.2|Fank1|ENSMUSG00000053111.14|fibronectin type 3 and ankyrin repeat domains 1	ENSMUST00000151031.2|Fank1|ENSMUSG00000053111.14|fibronectin type 3 and ankyrin repeat domains 1	ENSMUST00000121560.2|Fank1|ENSMUSG00000053111.14|fibronectin type 3 and ankyrin repeat domains 1
mm39_v1_chr11_-_66059270_66059306	0.639375	Rfx3_Rfx1_Rfx4	ENSMUST00000108691.2|Dnah9|ENSMUSG00000056752.17|dynein, axonemal, heavy chain 9
mm39_v1_chr6_+_126830050_126830079	0.637143	Rfx3_Rfx1_Rfx4	ENSMUST00000095440.9|Akap3|ENSMUSG00000030344.12|A kinase (PRKA) anchor protein 3
mm39_v1_chr14_+_77394173_77394265	0.636999	Rfx3_Rfx1_Rfx4	ENSMUST00000022589.9|Enox1|ENSMUSG00000022012.10|ecto-NOX disulfide-thiol exchanger 1
mm39_v1_chr6_+_149043136_149043162	0.636937	Rfx3_Rfx1_Rfx4	ENSMUST00000166416.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111551.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr7_+_130375799_130375915	0.636013	Rfx3_Rfx1_Rfx4	ENSMUST00000048453.7|Btbd16|ENSMUSG00000040298.7|BTB (POZ) domain containing 16	ENSMUST00000208593.2|Btbd16|ENSMUSG00000040298.7|BTB (POZ) domain containing 16
mm39_v1_chr7_+_126086516_126086562	0.635943	Rfx3_Rfx1_Rfx4	ENSMUST00000098048.6|Tufm|ENSMUSG00000073838.11|Tu translation elongation factor, mitochondrial	ENSMUST00000106392.10|Tufm|ENSMUSG00000073838.11|Tu translation elongation factor, mitochondrial
mm39_v1_chr7_-_127187767_127187767	0.631688	Rfx3_Rfx1_Rfx4	ENSMUST00000072155.5|Ccdc189|ENSMUSG00000057176.5|coiled-coil domain containing 189
mm39_v1_chr7_+_16678568_16678646	0.631118	Rfx3_Rfx1_Rfx4	ENSMUST00000094807.6|Pnmal2|ENSMUSG00000070802.6|PNMA-like 2
mm39_v1_chr17_+_32725420_32725475	0.62987	Rfx3_Rfx1_Rfx4	ENSMUST00000235238.2|Cyp4f17|ENSMUSG00000091586.3|cytochrome P450, family 4, subfamily f, polypeptide 17	ENSMUST00000165999.2|Cyp4f17|ENSMUSG00000091586.3|cytochrome P450, family 4, subfamily f, polypeptide 17
mm39_v1_chrX_+_35459589_35459600	0.626375	Rfx3_Rfx1_Rfx4	ENSMUST00000048067.10|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr6_+_85994173_85994214	0.624545	Rfx3_Rfx1_Rfx4	ENSMUST00000032070.4|Figla|ENSMUSG00000030001.5|folliculogenesis specific basic helix-loop-helix
mm39_v1_chr13_+_36301331_36301395	0.62427	Rfx3_Rfx1_Rfx4	ENSMUST00000021857.13|Fars2|ENSMUSG00000021420.14|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm39_v1_chr14_+_14159978_14160002	0.623346	Rfx3_Rfx1_Rfx4	ENSMUST00000137133.2|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A	ENSMUST00000036070.15|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A	ENSMUST00000121887.8|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A
mm39_v1_chr11_+_70453666_70453723	0.622482	Rfx3_Rfx1_Rfx4	ENSMUST00000072237.13|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000072873.14|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr7_+_16693604_16693726	0.620897	Rfx3_Rfx1_Rfx4	ENSMUST00000038163.8|Pnmal1|ENSMUSG00000041141.8|PNMA-like 1
mm39_v1_chr3_+_154799223_154799233	0.618997	Rfx3_Rfx1_Rfx4	ENSMUST00000194376.2|Lrriq3|ENSMUSG00000028182.15|leucine-rich repeats and IQ motif containing 3
mm39_v1_chr19_+_41017714_41017836	0.61885	Rfx3_Rfx1_Rfx4	ENSMUST00000051806.12|Dntt|ENSMUSG00000025014.14|deoxynucleotidyltransferase, terminal	ENSMUST00000112200.3|Dntt|ENSMUSG00000025014.14|deoxynucleotidyltransferase, terminal
mm39_v1_chr9_-_87137515_87137589	0.617214	Rfx3_Rfx1_Rfx4	ENSMUST00000093802.6|Cep162|ENSMUSG00000056919.10|centrosomal protein 162
mm39_v1_chr19_+_8817883_8817913	0.61586	Rfx3_Rfx1_Rfx4	ENSMUST00000086058.13|Bscl2|ENSMUSG00000071657.13|Berardinelli-Seip congenital lipodystrophy 2 (seipin)
mm39_v1_chrX_+_35459557_35459588	0.61443	Rfx3_Rfx1_Rfx4	ENSMUST00000115258.9|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr9_+_72892850_72892908	0.614392	Rfx3_Rfx1_Rfx4	ENSMUST00000150826.9|Ccpg1|ENSMUSG00000034563.17|cell cycle progression 1	ENSMUST00000085350.11|Ccpg1|ENSMUSG00000034563.17|cell cycle progression 1	ENSMUST00000140675.8|Ccpg1|ENSMUSG00000034563.17|cell cycle progression 1
mm39_v1_chr11_+_109541747_109541829	0.613267	Rfx3_Rfx1_Rfx4	ENSMUST00000049527.7|Prkar1a|ENSMUSG00000020612.17|protein kinase, cAMP dependent regulatory, type I, alpha
mm39_v1_chr11_+_8998575_8998633	0.611956	Rfx3_Rfx1_Rfx4	ENSMUST00000043285.5|Gm11992|ENSMUSG00000040978.5|predicted gene 11992
mm39_v1_chr5_-_49046874_49046899	0.611235	Rfx3_Rfx1_Rfx4	ENSMUST00000176978.8|Kcnip4|ENSMUSG00000029088.17|Kv channel interacting protein 4
mm39_v1_chr11_-_72097821_72097852	0.609841	Rfx3_Rfx1_Rfx4	ENSMUST00000204457.3|Gm43951|ENSMUSG00000107877.3|predicted gene, 43951
mm39_v1_chr15_+_103181311_103181339	0.607268	Rfx3_Rfx1_Rfx4	ENSMUST00000100162.5|Copz1|ENSMUSG00000060992.10|coatomer protein complex, subunit zeta 1	ENSMUST00000230893.2|Copz1|ENSMUSG00000060992.10|coatomer protein complex, subunit zeta 1
mm39_v1_chr11_+_90528953_90529036	0.605588	Rfx3_Rfx1_Rfx4	ENSMUST00000020851.15|Cox11|ENSMUSG00000020544.15|cytochrome c oxidase assembly protein 11, copper chaperone
mm39_v1_chr8_-_96161466_96161497	0.603102	Rfx3_Rfx1_Rfx4	ENSMUST00000213086.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20	ENSMUST00000034249.8|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chrX_+_10118600_10118622	0.602131	Rfx3_Rfx1_Rfx4	ENSMUST00000115528.3|Otc|ENSMUSG00000031173.14|ornithine transcarbamylase
mm39_v1_chrX_+_72166674_72166674	0.602065	Rfx3_Rfx1_Rfx4	ENSMUST00000179117.2|Pwwp4a|ENSMUSG00000067771.10|PWWP domain containing 4A
mm39_v1_chr2_+_136374186_136374207	0.601135	Rfx3_Rfx1_Rfx4	ENSMUST00000121717.2|Ankef1|ENSMUSG00000074771.11|ankyrin repeat and EF-hand domain containing 1
mm39_v1_chr15_-_101778130_101778147	0.600911	Rfx3_Rfx1_Rfx4	ENSMUST00000087996.7|Krt77|ENSMUSG00000067594.7|keratin 77
mm39_v1_chr10_+_81410549_81410576	0.599315	Rfx3_Rfx1_Rfx4	ENSMUST00000131794.8|Tle2|ENSMUSG00000034771.16|transducin-like enhancer of split 2	ENSMUST00000136341.8|Tle2|ENSMUSG00000034771.16|transducin-like enhancer of split 2
mm39_v1_chrX_+_35459601_35459614	0.597206	Rfx3_Rfx1_Rfx4	ENSMUST00000115257.8|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr15_+_100659622_100659679	0.596595	Rfx3_Rfx1_Rfx4	ENSMUST00000023776.13|Slc4a8|ENSMUSG00000023032.13|solute carrier family 4 (anion exchanger), member 8
mm39_v1_chr11_-_70129784_70129884	0.594763	Rfx3_Rfx1_Rfx4	ENSMUST00000141880.2|Rnasek|ENSMUSG00000093989.2|ribonuclease, RNase K
mm39_v1_chr5_+_34140877_34140892	0.59293	Rfx3_Rfx1_Rfx4	ENSMUST00000114382.2|Gm1673|ENSMUSG00000070858.13|predicted gene 1673
mm39_v1_chr13_-_48746836_48746881	0.590768	Rfx3_Rfx1_Rfx4	ENSMUST00000238995.2|Ptpdc1|ENSMUSG00000038042.12|protein tyrosine phosphatase domain containing 1
mm39_v1_chr5_-_149559737_149559756	0.590274	Rfx3_Rfx1_Rfx4	ENSMUST00000200805.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr7_+_16472335_16472401	0.589503	Rfx3_Rfx1_Rfx4	ENSMUST00000086112.8|Ap2s1|ENSMUSG00000008036.12|adaptor-related protein complex 2, sigma 1 subunit	ENSMUST00000205607.2|Ap2s1|ENSMUSG00000008036.12|adaptor-related protein complex 2, sigma 1 subunit
mm39_v1_chr10_-_110292053_110292106	0.586391	Rfx3_Rfx1_Rfx4	ENSMUST00000239301.2|Nav3|ENSMUSG00000020181.19|neuron navigator 3
mm39_v1_chr1_+_160970233_160970272	0.58563	Rfx3_Rfx1_Rfx4	ENSMUST00000125018.8|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45
mm39_v1_chr15_+_79113341_79113373	0.583224	Rfx3_Rfx1_Rfx4	ENSMUST00000163571.8|Pick1|ENSMUSG00000068206.14|protein interacting with C kinase 1
mm39_v1_chr1_-_119924920_119924980	0.581001	Rfx3_Rfx1_Rfx4	ENSMUST00000174370.8|Cfap221|ENSMUSG00000036962.13|cilia and flagella associated protein 221	ENSMUST00000174458.2|Cfap221|ENSMUSG00000036962.13|cilia and flagella associated protein 221
mm39_v1_chr7_+_24310738_24310775	0.580781	Rfx3_Rfx1_Rfx4	ENSMUST00000073325.6|Phldb3|ENSMUSG00000074277.5|pleckstrin homology like domain, family B, member 3
mm39_v1_chrX_+_35459621_35459646	0.578779	Rfx3_Rfx1_Rfx4	ENSMUST00000115256.2|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr1_+_75213114_75213165	0.57353	Rfx3_Rfx1_Rfx4	ENSMUST00000188290.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr8_+_55053809_55053839	0.572427	Rfx3_Rfx1_Rfx4	ENSMUST00000033917.7|Spata4|ENSMUSG00000031518.7|spermatogenesis associated 4
mm39_v1_chr9_+_20563386_20563401	0.569981	Rfx3_Rfx1_Rfx4	ENSMUST00000034689.8|Pin1|ENSMUSG00000032171.8|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm39_v1_chr12_+_52746158_52746186	0.568927	Rfx3_Rfx1_Rfx4	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr14_-_119160497_119160579	0.568303	Rfx3_Rfx1_Rfx4	ENSMUST00000047208.12|Dzip1|ENSMUSG00000042156.17|DAZ interacting protein 1
mm39_v1_chr2_-_118534444_118534444	0.564835	Rfx3_Rfx1_Rfx4	ENSMUST00000104937.2|Ankrd63|ENSMUSG00000078137.2|ankyrin repeat domain 63
mm39_v1_chr7_-_29931612_29931697	0.563355	Rfx3_Rfx1_Rfx4	ENSMUST00000006254.6|Tbcb|ENSMUSG00000006095.13|tubulin folding cofactor B
mm39_v1_chr15_+_79543397_79543468	0.558656	Rfx3_Rfx1_Rfx4	ENSMUST00000023064.9|Cby1|ENSMUSG00000022428.9|chibby family member 1, beta catenin antagonist
mm39_v1_chr7_-_16761790_16761846	0.5583	Rfx3_Rfx1_Rfx4	ENSMUST00000003183.12|Ppp5c|ENSMUSG00000003099.12|protein phosphatase 5, catalytic subunit
mm39_v1_chr11_-_97520511_97520541	0.554236	Rfx3_Rfx1_Rfx4	ENSMUST00000052281.6|Epop|ENSMUSG00000043439.6|elongin BC and polycomb repressive complex 2 associated protein
mm39_v1_chr5_-_137074880_137074989	0.553013	Rfx3_Rfx1_Rfx4	ENSMUST00000144303.2|Ap1s1|ENSMUSG00000004849.15|adaptor protein complex AP-1, sigma 1	ENSMUST00000111080.8|Ap1s1|ENSMUSG00000004849.15|adaptor protein complex AP-1, sigma 1
mm39_v1_chr12_-_17061545_17061563	0.550761	Rfx3_Rfx1_Rfx4	ENSMUST00000190691.2|2410004P03Rik|ENSMUSG00000071398.9|RIKEN cDNA 2410004P03 gene
mm39_v1_chr11_-_114686712_114686729	0.548482	Rfx3_Rfx1_Rfx4	ENSMUST00000000206.4|Btbd17|ENSMUSG00000000202.10|BTB (POZ) domain containing 17
mm39_v1_chr17_-_31496301_31496326	0.548275	Rfx3_Rfx1_Rfx4	ENSMUST00000235144.2|Rsph1|ENSMUSG00000024033.11|radial spoke head 1 homolog (Chlamydomonas)
mm39_v1_chr7_-_30750828_30750847	0.546117	Rfx3_Rfx1_Rfx4	ENSMUST00000206341.2|Fxyd7|ENSMUSG00000036578.8|FXYD domain-containing ion transport regulator 7
mm39_v1_chr2_+_32647246_32647331	0.542855	Rfx3_Rfx1_Rfx4	ENSMUST00000009707.14|Tor2a|ENSMUSG00000009563.17|torsin family 2, member A	ENSMUST00000177382.2|Tor2a|ENSMUSG00000009563.17|torsin family 2, member A	ENSMUST00000140999.2|Tor2a|ENSMUSG00000009563.17|torsin family 2, member A
mm39_v1_chrX_+_71962157_71962219	0.541658	Rfx3_Rfx1_Rfx4	ENSMUST00000033715.5|Nsdhl|ENSMUSG00000031349.5|NAD(P) dependent steroid dehydrogenase-like
mm39_v1_chr12_-_85421467_85421621	0.539918	Rfx3_Rfx1_Rfx4	ENSMUST00000040766.9|Tmed10|ENSMUSG00000021248.10|transmembrane p24 trafficking protein 10
mm39_v1_chr3_-_32546380_32546380	0.539432	Rfx3_Rfx1_Rfx4	ENSMUST00000164954.3|Kcnmb3|ENSMUSG00000091091.3|potassium large conductance calcium-activated channel, subfamily M, beta member 3
mm39_v1_chr7_-_44397473_44397473	0.536224	Rfx3_Rfx1_Rfx4	ENSMUST00000120074.8|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473
mm39_v1_chr6_+_145156860_145156933	0.535375	Rfx3_Rfx1_Rfx4	ENSMUST00000111725.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111726.10|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000039729.5|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111723.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111724.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111721.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111719.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1
mm39_v1_chr1_+_24717711_24717718	0.53401	Rfx3_Rfx1_Rfx4	ENSMUST00000191471.7|Lmbrd1|ENSMUSG00000073725.9|LMBR1 domain containing 1
mm39_v1_chrX_-_133501874_133501902	0.532606	Rfx3_Rfx1_Rfx4	ENSMUST00000033621.8|Gla|ENSMUSG00000031266.8|galactosidase, alpha
mm39_v1_chr12_-_17061504_17061541	0.531325	Rfx3_Rfx1_Rfx4	ENSMUST00000189479.2|2410004P03Rik|ENSMUSG00000071398.9|RIKEN cDNA 2410004P03 gene
mm39_v1_chr3_-_105908789_105908829	0.530361	Rfx3_Rfx1_Rfx4	ENSMUST00000066319.8|Pifo|ENSMUSG00000010136.15|primary cilia formation
mm39_v1_chr7_+_138793150_138793219	0.529458	Rfx3_Rfx1_Rfx4	ENSMUST00000106104.8|Lrrc27|ENSMUSG00000015980.15|leucine rich repeat containing 27
mm39_v1_chr6_+_103488291_103488335	0.528056	Rfx3_Rfx1_Rfx4	ENSMUST00000204321.2|Chl1|ENSMUSG00000030077.12|cell adhesion molecule L1-like
mm39_v1_chr5_+_38196568_38196643	0.524486	Rfx3_Rfx1_Rfx4	ENSMUST00000031008.13|Stx18|ENSMUSG00000029125.15|syntaxin 18	ENSMUST00000042146.15|Stx18|ENSMUSG00000029125.15|syntaxin 18	ENSMUST00000202412.4|Stx18|ENSMUSG00000029125.15|syntaxin 18	ENSMUST00000154929.5|Stx18|ENSMUSG00000029125.15|syntaxin 18
mm39_v1_chr4_-_43653539_43653557	0.523969	Rfx3_Rfx1_Rfx4	ENSMUST00000084646.11|Spag8|ENSMUSG00000066196.12|sperm associated antigen 8
mm39_v1_chr7_-_30750856_30750911	0.521245	Rfx3_Rfx1_Rfx4	ENSMUST00000073892.6|Fxyd7|ENSMUSG00000036578.8|FXYD domain-containing ion transport regulator 7
mm39_v1_chr11_+_106265645_106265658	0.519716	Rfx3_Rfx1_Rfx4	ENSMUST00000106816.8|Prr29|ENSMUSG00000009210.11|proline rich 29
mm39_v1_chr1_-_58735106_58735148	0.516702	Rfx3_Rfx1_Rfx4	ENSMUST00000055313.14|Flacc1|ENSMUSG00000047528.14|flagellum associated containing coiled-coil domains 1	ENSMUST00000188772.7|Flacc1|ENSMUSG00000047528.14|flagellum associated containing coiled-coil domains 1
mm39_v1_chr11_+_45871135_45871164	0.515692	Rfx3_Rfx1_Rfx4	ENSMUST00000049038.4|Sox30|ENSMUSG00000040489.6|SRY (sex determining region Y)-box 30
mm39_v1_chr4_-_141660390_141660406	0.515325	Rfx3_Rfx1_Rfx4	ENSMUST00000036701.8|Fhad1|ENSMUSG00000051435.12|forkhead-associated (FHA) phosphopeptide binding domain 1
mm39_v1_chr17_-_34846323_34846499	0.514123	Rfx3_Rfx1_Rfx4	ENSMUST00000168709.3|Gm20460|ENSMUSG00000092176.2|predicted gene 20460	ENSMUST00000064953.15|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000170345.8|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000171121.9|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000168391.9|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000169067.9|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2
mm39_v1_chr8_-_95869114_95869202	0.512219	Rfx3_Rfx1_Rfx4	ENSMUST00000212554.2|Kifc3|ENSMUSG00000031788.15|kinesin family member C3	ENSMUST00000169748.9|Kifc3|ENSMUSG00000031788.15|kinesin family member C3	ENSMUST00000034240.15|Kifc3|ENSMUSG00000031788.15|kinesin family member C3
mm39_v1_chr19_+_4889394_4889511	0.512199	Rfx3_Rfx1_Rfx4	ENSMUST00000088653.3|Ccdc87|ENSMUSG00000067872.3|coiled-coil domain containing 87
mm39_v1_chr5_-_41865461_41865472	0.512049	Rfx3_Rfx1_Rfx4	ENSMUST00000201422.4|Rab28|ENSMUSG00000029128.13|RAB28, member RAS oncogene family
mm39_v1_chr13_+_55612050_55612132	0.510332	Rfx3_Rfx1_Rfx4	ENSMUST00000046533.9|Prr7|ENSMUSG00000034686.9|proline rich 7 (synaptic)
mm39_v1_chr7_-_140461769_140461784	0.509783	Rfx3_Rfx1_Rfx4	ENSMUST00000106048.10|Sirt3|ENSMUSG00000025486.18|sirtuin 3	ENSMUST00000147331.9|Sirt3|ENSMUSG00000025486.18|sirtuin 3	ENSMUST00000137710.2|Sirt3|ENSMUSG00000025486.18|sirtuin 3
mm39_v1_chrX_-_135893776_135893838	0.50933	Rfx3_Rfx1_Rfx4	ENSMUST00000171738.2|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53	ENSMUST00000056674.6|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53	ENSMUST00000129807.2|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53
mm39_v1_chr11_-_67856457_67856489	0.508858	Rfx3_Rfx1_Rfx4	ENSMUST00000021287.12|Cfap52|ENSMUSG00000020904.12|cilia and flagella associated protein 52	ENSMUST00000126766.2|Cfap52|ENSMUSG00000020904.12|cilia and flagella associated protein 52
mm39_v1_chr7_+_118454957_118455024	0.507803	Rfx3_Rfx1_Rfx4	ENSMUST00000208658.2|Iqck|ENSMUSG00000073856.12|IQ motif containing K	ENSMUST00000098087.9|Iqck|ENSMUSG00000073856.12|IQ motif containing K	ENSMUST00000106547.2|Iqck|ENSMUSG00000073856.12|IQ motif containing K
mm39_v1_chr15_+_75576149_75576243	0.506987	Rfx3_Rfx1_Rfx4	ENSMUST00000023244.6|Rhpn1|ENSMUSG00000022580.14|rhophilin, Rho GTPase binding protein 1
mm39_v1_chr2_+_38888312_38888353	0.504711	Rfx3_Rfx1_Rfx4	ENSMUST00000112872.2|Wdr38|ENSMUSG00000035295.11|WD repeat domain 38
mm39_v1_chr2_-_168443540_168443577	0.503238	Rfx3_Rfx1_Rfx4	ENSMUST00000171689.8|Nfatc2|ENSMUSG00000027544.17|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	ENSMUST00000137451.2|Nfatc2|ENSMUSG00000027544.17|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
mm39_v1_chr3_-_88366351_88366408	0.502732	Rfx3_Rfx1_Rfx4	ENSMUST00000165898.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000127436.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr7_+_138792919_138792932	0.502518	Rfx3_Rfx1_Rfx4	ENSMUST00000156768.8|Lrrc27|ENSMUSG00000015980.15|leucine rich repeat containing 27
mm39_v1_chr16_+_14724485_14724544	0.496868	Rfx3_Rfx1_Rfx4	ENSMUST00000090277.3|Efcab1|ENSMUSG00000068617.6|EF-hand calcium binding domain 1
mm39_v1_chr4_+_40722461_40722513	0.494982	Rfx3_Rfx1_Rfx4	ENSMUST00000030118.10|Dnaja1|ENSMUSG00000028410.14|DnaJ heat shock protein family (Hsp40) member A1
mm39_v1_chr9_+_45924105_45924119	0.494527	Rfx3_Rfx1_Rfx4	ENSMUST00000126865.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr11_-_66059330_66059359	0.492942	Rfx3_Rfx1_Rfx4	ENSMUST00000080665.10|Dnah9|ENSMUSG00000056752.17|dynein, axonemal, heavy chain 9
mm39_v1_chr7_-_126408280_126408405	0.492809	Rfx3_Rfx1_Rfx4	ENSMUST00000207534.3|Aldoa|ENSMUSG00000114515.3|aldolase A, fructose-bisphosphate
mm39_v1_chr7_+_79896121_79896177	0.487609	Rfx3_Rfx1_Rfx4	ENSMUST00000058266.9|Ttll13|ENSMUSG00000045467.14|tubulin tyrosine ligase-like family, member 13
mm39_v1_chr5_-_135807194_135807245	0.482762	Rfx3_Rfx1_Rfx4	ENSMUST00000178796.2|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1	ENSMUST00000178515.8|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1	ENSMUST00000111164.9|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1
mm39_v1_chr1_-_36484328_36484352	0.482495	Rfx3_Rfx1_Rfx4	ENSMUST00000125304.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like	ENSMUST00000115011.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like
mm39_v1_chr5_-_53370761_53370826	0.481893	Rfx3_Rfx1_Rfx4	ENSMUST00000031090.8|Sel1l3|ENSMUSG00000029189.11|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm39_v1_chr1_+_75213171_75213200	0.478808	Rfx3_Rfx1_Rfx4	ENSMUST00000187058.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr17_-_24194181_24194215	0.478301	Rfx3_Rfx1_Rfx4	ENSMUST00000024936.11|Prss30|ENSMUSG00000024124.11|protease, serine 30
mm39_v1_chr5_+_137015873_137015873	0.477264	Rfx3_Rfx1_Rfx4	ENSMUST00000004968.11|Plod3|ENSMUSG00000004846.11|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm39_v1_chr18_-_46331877_46331891	0.476926	Rfx3_Rfx1_Rfx4	ENSMUST00000167364.9|Trim36|ENSMUSG00000033949.13|tripartite motif-containing 36
mm39_v1_chr14_+_31807760_31807834	0.475624	Rfx3_Rfx1_Rfx4	ENSMUST00000170600.8|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1	ENSMUST00000168986.7|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1	ENSMUST00000169649.2|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1
mm39_v1_chr3_+_98289854_98289869	0.473838	Rfx3_Rfx1_Rfx4	ENSMUST00000178372.2|Zfp697|ENSMUSG00000050064.15|zinc finger protein 697
mm39_v1_chr16_+_32315090_32315118	0.473026	Rfx3_Rfx1_Rfx4	ENSMUST00000231510.2|Zdhhc19|ENSMUSG00000052363.9|zinc finger, DHHC domain containing 19
mm39_v1_chr4_-_137309415_137309415	0.470309	Rfx3_Rfx1_Rfx4	ENSMUST00000238941.2|Ldlrad2|ENSMUSG00000094035.4|low density lipoprotein receptor class A domain containing 2
mm39_v1_chrX_+_149981074_149981136	0.468924	Rfx3_Rfx1_Rfx4	ENSMUST00000184730.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000184392.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000096285.5|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3
mm39_v1_chr7_-_44024429_44024459	0.468865	Rfx3_Rfx1_Rfx4	ENSMUST00000107933.8|1700008O03Rik|ENSMUSG00000008028.16|RIKEN cDNA 1700008O03 gene
mm39_v1_chr2_-_19558719_19558733	0.46885	Rfx3_Rfx1_Rfx4	ENSMUST00000062060.5|4921504E06Rik|ENSMUSG00000026734.10|RIKEN cDNA 4921504E06 gene
mm39_v1_chr15_+_30457772_30457856	0.46815	Rfx3_Rfx1_Rfx4	ENSMUST00000228282.2|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr12_+_84408742_84408796	0.467912	Rfx3_Rfx1_Rfx4	ENSMUST00000021661.13|Coq6|ENSMUSG00000021235.14|coenzyme Q6 monooxygenase
mm39_v1_chr3_+_98289755_98289836	0.46654	Rfx3_Rfx1_Rfx4	ENSMUST00000056096.15|Zfp697|ENSMUSG00000050064.15|zinc finger protein 697
mm39_v1_chr10_+_60235505_60235550	0.462569	Rfx3_Rfx1_Rfx4	ENSMUST00000164428.3|Gm17455|ENSMUSG00000090439.4|predicted gene, 17455
mm39_v1_chr6_-_124756645_124756698	0.461639	Rfx3_Rfx1_Rfx4	ENSMUST00000147669.2|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000128697.8|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000032218.10|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000112475.9|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23
mm39_v1_chr1_-_59276252_59276416	0.461305	Rfx3_Rfx1_Rfx4	ENSMUST00000163058.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000160945.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000027178.13|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor
mm39_v1_chr6_-_77956635_77956691	0.458716	Rfx3_Rfx1_Rfx4	ENSMUST00000161846.8|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000160894.8|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2
mm39_v1_chr4_-_153567221_153567268	0.458586	Rfx3_Rfx1_Rfx4	ENSMUST00000105646.3|Ajap1|ENSMUSG00000039546.10|adherens junction associated protein 1
mm39_v1_chr1_-_172156828_172156874	0.457795	Rfx3_Rfx1_Rfx4	ENSMUST00000194204.2|Kcnj9|ENSMUSG00000038026.13|potassium inwardly-rectifying channel, subfamily J, member 9
mm39_v1_chr4_-_43653559_43653594	0.454852	Rfx3_Rfx1_Rfx4	ENSMUST00000107870.3|Spag8|ENSMUSG00000066196.12|sperm associated antigen 8
mm39_v1_chr16_+_23247883_23247883	0.454649	Rfx3_Rfx1_Rfx4	ENSMUST00000038730.7|Rtp1|ENSMUSG00000033383.7|receptor transporter protein 1
mm39_v1_chr8_+_123338357_123338403	0.454623	Rfx3_Rfx1_Rfx4	ENSMUST00000015157.10|Trappc2l|ENSMUSG00000015013.10|trafficking protein particle complex 2-like
mm39_v1_chr5_-_134935579_134935594	0.453738	Rfx3_Rfx1_Rfx4	ENSMUST00000201316.4|Tmem270|ENSMUSG00000040576.9|transmembrane protein 270	ENSMUST00000047305.6|Tmem270|ENSMUSG00000040576.9|transmembrane protein 270
mm39_v1_chr2_+_29678248_29678314	0.45275	Rfx3_Rfx1_Rfx4	ENSMUST00000028137.10|Coq4|ENSMUSG00000026798.11|coenzyme Q4	ENSMUST00000148791.2|Coq4|ENSMUSG00000026798.11|coenzyme Q4
mm39_v1_chr4_+_40722911_40723001	0.452517	Rfx3_Rfx1_Rfx4	ENSMUST00000164233.8|Dnaja1|ENSMUSG00000028410.14|DnaJ heat shock protein family (Hsp40) member A1	ENSMUST00000137246.8|Dnaja1|ENSMUSG00000028410.14|DnaJ heat shock protein family (Hsp40) member A1	ENSMUST00000125442.8|Dnaja1|ENSMUSG00000028410.14|DnaJ heat shock protein family (Hsp40) member A1
mm39_v1_chr11_-_72252663_72252725	0.450902	Rfx3_Rfx1_Rfx4	ENSMUST00000108503.9|Tekt1|ENSMUSG00000020799.17|tektin 1
mm39_v1_chr7_+_140774962_140774996	0.449338	Rfx3_Rfx1_Rfx4	ENSMUST00000047093.11|Lrrc56|ENSMUSG00000038637.16|leucine rich repeat containing 56
mm39_v1_chr7_-_16761732_16761771	0.447422	Rfx3_Rfx1_Rfx4	ENSMUST00000142597.2|Ppp5c|ENSMUSG00000003099.12|protein phosphatase 5, catalytic subunit
mm39_v1_chr19_+_6413840_6413971	0.447408	Rfx3_Rfx1_Rfx4	ENSMUST00000113488.8|Sf1|ENSMUSG00000024949.18|splicing factor 1	ENSMUST00000113487.8|Sf1|ENSMUSG00000024949.18|splicing factor 1
mm39_v1_chrX_+_47712614_47712666	0.446847	Rfx3_Rfx1_Rfx4	ENSMUST00000114936.8|Slc25a14|ENSMUSG00000031105.17|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm39_v1_chr7_-_79382573_79382595	0.44509	Rfx3_Rfx1_Rfx4	ENSMUST00000205747.2|Plin1|ENSMUSG00000030546.15|perilipin 1
mm39_v1_chr17_+_57024759_57024819	0.442767	Rfx3_Rfx1_Rfx4	ENSMUST00000002452.8|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11	ENSMUST00000233832.2|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11	ENSMUST00000233233.2|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11
mm39_v1_chr1_-_172156884_172156893	0.439589	Rfx3_Rfx1_Rfx4	ENSMUST00000062387.8|Kcnj9|ENSMUSG00000038026.13|potassium inwardly-rectifying channel, subfamily J, member 9
mm39_v1_chr12_-_72231802_72231807	0.439418	Rfx3_Rfx1_Rfx4	ENSMUST00000021494.6|Ccdc175|ENSMUSG00000021086.6|coiled-coil domain containing 175
mm39_v1_chr9_-_7176957_7176998	0.437381	Rfx3_Rfx1_Rfx4	ENSMUST00000147193.8|Dync2h1|ENSMUSG00000047193.17|dynein cytoplasmic 2 heavy chain 1	ENSMUST00000139115.2|Dync2h1|ENSMUSG00000047193.17|dynein cytoplasmic 2 heavy chain 1
mm39_v1_chr4_+_135223283_135223302	0.431986	Rfx3_Rfx1_Rfx4	ENSMUST00000063707.3|Stpg1|ENSMUSG00000028801.15|sperm tail PG rich repeat containing 1
mm39_v1_chr10_+_58333740_58333792	0.431336	Rfx3_Rfx1_Rfx4	ENSMUST00000036576.10|Ccdc138|ENSMUSG00000038010.10|coiled-coil domain containing 138
mm39_v1_chr6_-_88495835_88495887	0.428951	Rfx3_Rfx1_Rfx4	ENSMUST00000032168.7|Sec61a1|ENSMUSG00000030082.15|Sec61 alpha 1 subunit (S. cerevisiae)
mm39_v1_chr5_-_135807092_135807181	0.425853	Rfx3_Rfx1_Rfx4	ENSMUST00000053906.11|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1	ENSMUST00000177559.8|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1	ENSMUST00000111161.9|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1	ENSMUST00000111162.8|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1	ENSMUST00000111163.9|Styxl1|ENSMUSG00000019178.18|serine/threonine/tyrosine interacting-like 1
mm39_v1_chr13_+_42834989_42835062	0.424999	Rfx3_Rfx1_Rfx4	ENSMUST00000149235.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr10_-_116786350_116786363	0.424368	Rfx3_Rfx1_Rfx4	ENSMUST00000218391.2|Rab3ip|ENSMUSG00000064181.7|RAB3A interacting protein
mm39_v1_chr7_-_79382503_79382572	0.420697	Rfx3_Rfx1_Rfx4	ENSMUST00000032762.14|Plin1|ENSMUSG00000030546.15|perilipin 1	ENSMUST00000205915.2|Plin1|ENSMUSG00000030546.15|perilipin 1
mm39_v1_chr9_+_107424488_107424575	0.4202	Rfx3_Rfx1_Rfx4	ENSMUST00000010188.9|Zmynd10|ENSMUSG00000010044.13|zinc finger, MYND domain containing 10
mm39_v1_chr5_+_136937083_136937097	0.419114	Rfx3_Rfx1_Rfx4	ENSMUST00000008131.10|Ift22|ENSMUSG00000007987.13|intraflagellar transport 22
mm39_v1_chr3_-_105867415_105867415	0.417054	Rfx3_Rfx1_Rfx4	ENSMUST00000118209.8|Atp5pb|ENSMUSG00000000563.18|ATP synthase peripheral stalk-membrane subunit b
mm39_v1_chr2_+_128971620_128971712	0.416752	Rfx3_Rfx1_Rfx4	ENSMUST00000035481.5|Chchd5|ENSMUSG00000037938.5|coiled-coil-helix-coiled-coil-helix domain containing 5
mm39_v1_chr5_-_149559636_149559654	0.415486	Rfx3_Rfx1_Rfx4	ENSMUST00000201452.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr11_+_119119925_119119961	0.413848	Rfx3_Rfx1_Rfx4	ENSMUST00000053440.8|Ccdc40|ENSMUSG00000039963.21|coiled-coil domain containing 40
mm39_v1_chr12_-_65012270_65012312	0.412653	Rfx3_Rfx1_Rfx4	ENSMUST00000222508.2|Klhl28|ENSMUSG00000020948.10|kelch-like 28
mm39_v1_chr12_+_113149487_113149559	0.412283	Rfx3_Rfx1_Rfx4	ENSMUST00000058491.8|Tmem121|ENSMUSG00000049036.8|transmembrane protein 121
mm39_v1_chr12_-_87037204_87037241	0.411255	Rfx3_Rfx1_Rfx4	ENSMUST00000222543.2|Zdhhc22|ENSMUSG00000048483.7|zinc finger, DHHC-type containing 22
mm39_v1_chr6_+_90443293_90443382	0.408145	Rfx3_Rfx1_Rfx4	ENSMUST00000203607.2|Klf15|ENSMUSG00000030087.12|Kruppel-like factor 15
mm39_v1_chr1_-_172085977_172086005	0.406931	Rfx3_Rfx1_Rfx4	ENSMUST00000111243.2|Atp1a4|ENSMUSG00000007107.7|ATPase, Na+/K+ transporting, alpha 4 polypeptide
mm39_v1_chr12_+_84455813_84455876	0.406039	Rfx3_Rfx1_Rfx4	ENSMUST00000081828.13|Bbof1|ENSMUSG00000057265.14|basal body orientation factor 1
mm39_v1_chr10_+_83558729_83558830	0.401935	Rfx3_Rfx1_Rfx4	ENSMUST00000150459.3|1500009L16Rik|ENSMUSG00000087651.4|RIKEN cDNA 1500009L16 gene
mm39_v1_chr12_-_103923145_103923164	0.401259	Rfx3_Rfx1_Rfx4	ENSMUST00000085054.5|Serpina1e|ENSMUSG00000072849.11|serine (or cysteine) peptidase inhibitor, clade A, member 1E
mm39_v1_chr9_-_56759229_56759296	0.400668	Rfx3_Rfx1_Rfx4	ENSMUST00000055036.7|Odf3l1|ENSMUSG00000045620.8|outer dense fiber of sperm tails 3-like 1
mm39_v1_chr12_+_85266249_85266320	0.400094	Rfx3_Rfx1_Rfx4	ENSMUST00000004910.12|Eif2b2|ENSMUSG00000004788.12|eukaryotic translation initiation factor 2B, subunit 2 beta	ENSMUST00000140900.8|Eif2b2|ENSMUSG00000004788.12|eukaryotic translation initiation factor 2B, subunit 2 beta	ENSMUST00000136495.3|Eif2b2|ENSMUSG00000004788.12|eukaryotic translation initiation factor 2B, subunit 2 beta
mm39_v1_chr5_+_35740371_35740454	0.398807	Rfx3_Rfx1_Rfx4	ENSMUST00000068947.14|Acox3|ENSMUSG00000029098.18|acyl-Coenzyme A oxidase 3, pristanoyl	ENSMUST00000114237.8|Acox3|ENSMUSG00000029098.18|acyl-Coenzyme A oxidase 3, pristanoyl	ENSMUST00000156125.8|Acox3|ENSMUSG00000029098.18|acyl-Coenzyme A oxidase 3, pristanoyl	ENSMUST00000202266.4|Acox3|ENSMUSG00000029098.18|acyl-Coenzyme A oxidase 3, pristanoyl	ENSMUST00000068563.12|Acox3|ENSMUSG00000029098.18|acyl-Coenzyme A oxidase 3, pristanoyl
mm39_v1_chr2_-_28945051_28945095	0.398439	Rfx3_Rfx1_Rfx4	ENSMUST00000189711.7|Cfap77|ENSMUSG00000079502.9|cilia and flagella associated protein 77	ENSMUST00000157048.4|Cfap77|ENSMUSG00000079502.9|cilia and flagella associated protein 77
mm39_v1_chr12_-_110649040_110649056	0.398392	Rfx3_Rfx1_Rfx4	ENSMUST00000222915.2|1700001K19Rik|ENSMUSG00000056508.7|RIKEN cDNA 1700001K19 gene	ENSMUST00000070659.7|1700001K19Rik|ENSMUSG00000056508.7|RIKEN cDNA 1700001K19 gene
mm39_v1_chr2_+_124978518_124978553	0.397766	Rfx3_Rfx1_Rfx4	ENSMUST00000238754.2|Ctxn2|ENSMUSG00000074872.4|cortexin 2
mm39_v1_chr7_-_121666486_121666486	0.396836	Rfx3_Rfx1_Rfx4	ENSMUST00000033159.4|Ears2|ENSMUSG00000030871.12|glutamyl-tRNA synthetase 2, mitochondrial
mm39_v1_chrX_+_135491587_135491618	0.396351	Rfx3_Rfx1_Rfx4	ENSMUST00000138047.8|Tceal3|ENSMUSG00000044550.12|transcription elongation factor A (SII)-like 3	ENSMUST00000145648.8|Tceal3|ENSMUSG00000044550.12|transcription elongation factor A (SII)-like 3
mm39_v1_chr16_+_32315076_32315086	0.394819	Rfx3_Rfx1_Rfx4	ENSMUST00000064192.8|Zdhhc19|ENSMUSG00000052363.9|zinc finger, DHHC domain containing 19
mm39_v1_chr18_+_36098090_36098165	0.394358	Rfx3_Rfx1_Rfx4	ENSMUST00000176873.8|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2	ENSMUST00000177432.8|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2	ENSMUST00000175734.2|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2
mm39_v1_chr7_-_44203319_44203392	0.389791	Rfx3_Rfx1_Rfx4	ENSMUST00000208366.2|Nr1h2|ENSMUSG00000060601.14|nuclear receptor subfamily 1, group H, member 2	ENSMUST00000207737.2|Nr1h2|ENSMUSG00000060601.14|nuclear receptor subfamily 1, group H, member 2	ENSMUST00000107910.8|Nr1h2|ENSMUSG00000060601.14|nuclear receptor subfamily 1, group H, member 2	ENSMUST00000167197.8|Nr1h2|ENSMUSG00000060601.14|nuclear receptor subfamily 1, group H, member 2	ENSMUST00000128600.3|Nr1h2|ENSMUSG00000060601.14|nuclear receptor subfamily 1, group H, member 2	ENSMUST00000107911.8|Nr1h2|ENSMUSG00000060601.14|nuclear receptor subfamily 1, group H, member 2	ENSMUST00000073488.12|Nr1h2|ENSMUSG00000060601.14|nuclear receptor subfamily 1, group H, member 2
mm39_v1_chr5_+_35074862_35074890	0.386703	Rfx3_Rfx1_Rfx4	ENSMUST00000202205.2|Msantd1|ENSMUSG00000051246.4|Myb/SANT-like DNA-binding domain containing 1
mm39_v1_chr6_-_77956499_77956605	0.386028	Rfx3_Rfx1_Rfx4	ENSMUST00000159626.8|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000075340.12|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000162273.2|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2
mm39_v1_chr5_-_28415020_28415036	0.385954	Rfx3_Rfx1_Rfx4	ENSMUST00000118882.2|Cnpy1|ENSMUSG00000044681.20|canopy FGF signaling regulator 1
mm39_v1_chr11_+_106265660_106265687	0.385391	Rfx3_Rfx1_Rfx4	ENSMUST00000188561.7|Prr29|ENSMUSG00000009210.11|proline rich 29	ENSMUST00000190795.7|Prr29|ENSMUSG00000009210.11|proline rich 29	ENSMUST00000185986.7|Prr29|ENSMUSG00000009210.11|proline rich 29	ENSMUST00000190268.2|Prr29|ENSMUSG00000009210.11|proline rich 29
mm39_v1_chr10_+_61431271_61431271	0.384126	Rfx3_Rfx1_Rfx4	ENSMUST00000020287.8|Npffr1|ENSMUSG00000020090.8|neuropeptide FF receptor 1
mm39_v1_chr6_+_34006356_34006401	0.381135	Rfx3_Rfx1_Rfx4	ENSMUST00000228187.2|Lrguk|ENSMUSG00000056215.14|leucine-rich repeats and guanylate kinase domain containing	ENSMUST00000070189.10|Lrguk|ENSMUSG00000056215.14|leucine-rich repeats and guanylate kinase domain containing	ENSMUST00000101564.9|Lrguk|ENSMUSG00000056215.14|leucine-rich repeats and guanylate kinase domain containing
mm39_v1_chr1_+_75213044_75213074	0.381101	Rfx3_Rfx1_Rfx4	ENSMUST00000188931.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr11_+_58062467_58062514	0.381057	Rfx3_Rfx1_Rfx4	ENSMUST00000020820.2|Mrpl22|ENSMUSG00000020514.9|mitochondrial ribosomal protein L22
mm39_v1_chr8_-_121835037_121835098	0.379572	Rfx3_Rfx1_Rfx4	ENSMUST00000126431.2|Mthfsd|ENSMUSG00000031816.16|methenyltetrahydrofolate synthetase domain containing	ENSMUST00000139782.8|Mthfsd|ENSMUSG00000031816.16|methenyltetrahydrofolate synthetase domain containing	ENSMUST00000047282.12|Mthfsd|ENSMUSG00000031816.16|methenyltetrahydrofolate synthetase domain containing	ENSMUST00000116415.9|Mthfsd|ENSMUSG00000031816.16|methenyltetrahydrofolate synthetase domain containing
mm39_v1_chr6_-_145379805_145379816	0.377664	Rfx3_Rfx1_Rfx4	ENSMUST00000149666.2|Lmntd1|ENSMUSG00000054966.14|lamin tail domain containing 1
mm39_v1_chr10_-_109669053_109669082	0.376635	Rfx3_Rfx1_Rfx4	ENSMUST00000238286.2|Nav3|ENSMUSG00000020181.19|neuron navigator 3
mm39_v1_chr4_-_118477960_118477988	0.375561	Rfx3_Rfx1_Rfx4	ENSMUST00000071972.11|Cfap57|ENSMUSG00000028730.15|cilia and flagella associated protein 57
mm39_v1_chr12_+_72488625_72488640	0.37304	Rfx3_Rfx1_Rfx4	ENSMUST00000161284.3|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9	ENSMUST00000162159.8|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9
mm39_v1_chr5_-_28415166_28415178	0.372303	Rfx3_Rfx1_Rfx4	ENSMUST00000117098.2|Cnpy1|ENSMUSG00000044681.20|canopy FGF signaling regulator 1
mm39_v1_chr17_+_25115461_25115524	0.370902	Rfx3_Rfx1_Rfx4	ENSMUST00000024978.7|Nme3|ENSMUSG00000073435.11|NME/NM23 nucleoside diphosphate kinase 3
mm39_v1_chr17_+_88837540_88837570	0.370197	Rfx3_Rfx1_Rfx4	ENSMUST00000038551.8|Ppp1r21|ENSMUSG00000034709.9|protein phosphatase 1, regulatory subunit 21
mm39_v1_chr8_-_70346625_70346634	0.369158	Rfx3_Rfx1_Rfx4	ENSMUST00000152938.9|Yjefn3|ENSMUSG00000048967.17|YjeF N-terminal domain containing 3
mm39_v1_chrX_-_133501677_133501754	0.367283	Rfx3_Rfx1_Rfx4	ENSMUST00000239113.2|Gla|ENSMUSG00000031266.8|galactosidase, alpha
mm39_v1_chr7_-_139662135_139662155	0.365454	Rfx3_Rfx1_Rfx4	ENSMUST00000211044.2|Caly|ENSMUSG00000025468.16|calcyon neuron-specific vesicular protein
mm39_v1_chr18_-_22983794_22983816	0.365311	Rfx3_Rfx1_Rfx4	ENSMUST00000092015.11|Nol4|ENSMUSG00000041923.16|nucleolar protein 4	ENSMUST00000069215.13|Nol4|ENSMUSG00000041923.16|nucleolar protein 4
mm39_v1_chr2_-_30068433_30068478	0.364071	Rfx3_Rfx1_Rfx4	ENSMUST00000100220.5|Spout1|ENSMUSG00000039660.17|SPOUT domain containing methyltransferase 1
mm39_v1_chr7_-_139662159_139662193	0.363786	Rfx3_Rfx1_Rfx4	ENSMUST00000166758.4|Caly|ENSMUSG00000025468.16|calcyon neuron-specific vesicular protein
mm39_v1_chr7_+_112026712_112026930	0.363741	Rfx3_Rfx1_Rfx4	ENSMUST00000106643.8|Parva|ENSMUSG00000030770.16|parvin, alpha	ENSMUST00000033030.14|Parva|ENSMUSG00000030770.16|parvin, alpha
mm39_v1_chr8_-_71308040_71308040	0.363712	Rfx3_Rfx1_Rfx4	ENSMUST00000212509.3|Kcnn1|ENSMUSG00000002908.18|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
mm39_v1_chr11_+_101169918_101169973	0.362982	Rfx3_Rfx1_Rfx4	ENSMUST00000103107.5|Cntd1|ENSMUSG00000078653.5|cyclin N-terminal domain containing 1
mm39_v1_chr7_-_82297676_82297753	0.362152	Rfx3_Rfx1_Rfx4	ENSMUST00000207693.2|Saxo2|ENSMUSG00000038570.16|stabilizer of axonemal microtubules 2	ENSMUST00000056728.5|Saxo2|ENSMUSG00000038570.16|stabilizer of axonemal microtubules 2	ENSMUST00000156720.8|Saxo2|ENSMUSG00000038570.16|stabilizer of axonemal microtubules 2	ENSMUST00000126478.2|Saxo2|ENSMUSG00000038570.16|stabilizer of axonemal microtubules 2
mm39_v1_chr6_-_33037191_33037202	0.361489	Rfx3_Rfx1_Rfx4	ENSMUST00000066379.11|Chchd3|ENSMUSG00000053768.14|coiled-coil-helix-coiled-coil-helix domain containing 3
mm39_v1_chr17_-_34846122_34846166	0.359673	Rfx3_Rfx1_Rfx4	ENSMUST00000171376.8|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000169287.2|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2
mm39_v1_chr8_-_91544021_91544021	0.359383	Rfx3_Rfx1_Rfx4	ENSMUST00000209208.2|Gm19935|ENSMUSG00000110332.2|predicted gene, 19935
mm39_v1_chr4_+_138452593_138452636	0.359276	Rfx3_Rfx1_Rfx4	ENSMUST00000124660.7|Pla2g2c|ENSMUSG00000028750.13|phospholipase A2, group IIC	ENSMUST00000030530.6|Pla2g2c|ENSMUSG00000028750.13|phospholipase A2, group IIC
mm39_v1_chr9_+_107805647_107805684	0.358697	Rfx3_Rfx1_Rfx4	ENSMUST00000085073.2|Actl11|ENSMUSG00000066368.2|actin-like 11
mm39_v1_chr7_+_3352159_3352170	0.358165	Rfx3_Rfx1_Rfx4	ENSMUST00000172109.4|Prkcg|ENSMUSG00000078816.11|protein kinase C, gamma
mm39_v1_chr8_-_121835125_121835145	0.358104	Rfx3_Rfx1_Rfx4	ENSMUST00000133037.8|Mthfsd|ENSMUSG00000031816.16|methenyltetrahydrofolate synthetase domain containing
mm39_v1_chr7_+_140461860_140461895	0.357881	Rfx3_Rfx1_Rfx4	ENSMUST00000026560.14|Psmd13|ENSMUSG00000025487.16|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm39_v1_chr2_-_112198366_112198381	0.357835	Rfx3_Rfx1_Rfx4	ENSMUST00000028551.4|Emc4|ENSMUSG00000027131.4|ER membrane protein complex subunit 4
mm39_v1_chrX_-_101114906_101114959	0.356781	Rfx3_Rfx1_Rfx4	ENSMUST00000188731.2|Rtl5|ENSMUSG00000049191.13|retrotransposon Gag like 5
mm39_v1_chr9_-_7177000_7177063	0.355164	Rfx3_Rfx1_Rfx4	ENSMUST00000048417.13|Dync2h1|ENSMUSG00000047193.17|dynein cytoplasmic 2 heavy chain 1
mm39_v1_chr15_-_66372704_66372759	0.355047	Rfx3_Rfx1_Rfx4	ENSMUST00000023006.7|Lrrc6|ENSMUSG00000022375.7|leucine rich repeat containing 6 (testis)
mm39_v1_chr7_-_79382651_79382666	0.353599	Rfx3_Rfx1_Rfx4	ENSMUST00000205413.2|Plin1|ENSMUSG00000030546.15|perilipin 1
mm39_v1_chrX_+_138963623_138963638	0.353353	Rfx3_Rfx1_Rfx4	ENSMUST00000044806.3|Dnaaf6b|ENSMUSG00000042433.3|dynein axonemal assembly factor 6B
mm39_v1_chr17_+_79244553_79244612	0.352446	Rfx3_Rfx1_Rfx4	ENSMUST00000024887.6|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7	ENSMUST00000233068.2|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7	ENSMUST00000233777.2|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7
mm39_v1_chr4_-_138452517_138452576	0.34866	Rfx3_Rfx1_Rfx4	ENSMUST00000105811.9|Ubxn10|ENSMUSG00000043621.14|UBX domain protein 10
mm39_v1_chr1_-_31261678_31261701	0.345426	Rfx3_Rfx1_Rfx4	ENSMUST00000187892.8|4931428L18Rik|ENSMUSG00000086727.9|RIKEN cDNA 4931428L18 gene	ENSMUST00000233331.2|4931428L18Rik|ENSMUSG00000086727.9|RIKEN cDNA 4931428L18 gene
mm39_v1_chr15_-_78280099_78280118	0.343846	Rfx3_Rfx1_Rfx4	ENSMUST00000229878.2|Tex33|ENSMUSG00000062154.15|testis expressed 33	ENSMUST00000165170.8|Tex33|ENSMUSG00000062154.15|testis expressed 33	ENSMUST00000074380.14|Tex33|ENSMUSG00000062154.15|testis expressed 33
mm39_v1_chr9_-_51240201_51240229	0.343352	Rfx3_Rfx1_Rfx4	ENSMUST00000039959.11|1810046K07Rik|ENSMUSG00000036027.14|RIKEN cDNA 1810046K07 gene	ENSMUST00000238450.3|1810046K07Rik|ENSMUSG00000036027.14|RIKEN cDNA 1810046K07 gene
mm39_v1_chr3_+_144824644_144824735	0.342569	Rfx3_Rfx1_Rfx4	ENSMUST00000199124.5|Odf2l|ENSMUSG00000028256.17|outer dense fiber of sperm tails 2-like
mm39_v1_chr2_-_38177182_38177208	0.341373	Rfx3_Rfx1_Rfx4	ENSMUST00000130472.8|Dennd1a|ENSMUSG00000035392.18|DENN/MADD domain containing 1A
mm39_v1_chr14_-_31807552_31807686	0.340627	Rfx3_Rfx1_Rfx4	ENSMUST00000022461.11|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3	ENSMUST00000067955.12|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3	ENSMUST00000124303.9|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3
mm39_v1_chr10_-_39009910_39009923	0.339107	Rfx3_Rfx1_Rfx4	ENSMUST00000135785.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr14_-_54522396_54522396	0.337128	Rfx3_Rfx1_Rfx4	ENSMUST00000216214.2|Olfr49|ENSMUSG00000048153.7|olfactory receptor 49
mm39_v1_chr7_+_143792455_143792467	0.336397	Rfx3_Rfx1_Rfx4	ENSMUST00000239495.2|Shank2|ENSMUSG00000037541.23|SH3 and multiple ankyrin repeat domains 2
mm39_v1_chr15_+_79113563_79113622	0.336374	Rfx3_Rfx1_Rfx4	ENSMUST00000018295.14|Pick1|ENSMUSG00000068206.14|protein interacting with C kinase 1	ENSMUST00000053926.12|Gm49486|ENSMUSG00000116121.2|predicted gene, 49486
mm39_v1_chr13_+_41302272_41302272	0.331526	Rfx3_Rfx1_Rfx4	ENSMUST00000141292.9|Sycp2l|ENSMUSG00000038651.16|synaptonemal complex protein 2-like
mm39_v1_chr16_-_59459486_59459541	0.3307	Rfx3_Rfx1_Rfx4	ENSMUST00000149797.3|Arl6|ENSMUSG00000022722.19|ADP-ribosylation factor-like 6	ENSMUST00000023405.16|Arl6|ENSMUSG00000022722.19|ADP-ribosylation factor-like 6
mm39_v1_chr11_-_103158190_103158298	0.3296	Rfx3_Rfx1_Rfx4	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr1_-_171115487_171115564	0.325578	Rfx3_Rfx1_Rfx4	ENSMUST00000111305.8|Usp21|ENSMUSG00000053483.16|ubiquitin specific peptidase 21	ENSMUST00000065941.12|Usp21|ENSMUSG00000053483.16|ubiquitin specific peptidase 21
mm39_v1_chr19_+_5091365_5091444	0.325345	Rfx3_Rfx1_Rfx4	ENSMUST00000116567.4|Brms1|ENSMUSG00000080268.5|breast cancer metastasis-suppressor 1	ENSMUST00000235918.2|Brms1|ENSMUSG00000080268.5|breast cancer metastasis-suppressor 1
mm39_v1_chr4_+_102835888_102835912	0.324594	Rfx3_Rfx1_Rfx4	ENSMUST00000223169.2|Dynlt5|ENSMUSG00000028523.15|dynein light chain Tctex-type 5
mm39_v1_chr12_-_110807330_110807385	0.324374	Rfx3_Rfx1_Rfx4	ENSMUST00000177224.2|Mok|ENSMUSG00000056458.17|MOK protein kinase	ENSMUST00000084974.11|Mok|ENSMUSG00000056458.17|MOK protein kinase	ENSMUST00000070565.15|Mok|ENSMUSG00000056458.17|MOK protein kinase
mm39_v1_chr18_-_23174698_23174729	0.322439	Rfx3_Rfx1_Rfx4	ENSMUST00000097651.10|Nol4|ENSMUSG00000041923.16|nucleolar protein 4
mm39_v1_chr15_-_71599664_71599697	0.322217	Rfx3_Rfx1_Rfx4	ENSMUST00000022953.10|Fam135b|ENSMUSG00000036800.9|family with sequence similarity 135, member B
mm39_v1_chr1_+_24717722_24717756	0.318512	Rfx3_Rfx1_Rfx4	ENSMUST00000186096.7|Lmbrd1|ENSMUSG00000073725.9|LMBR1 domain containing 1
mm39_v1_chr17_+_80597632_80597711	0.318509	Rfx3_Rfx1_Rfx4	ENSMUST00000227729.2|Morn2|ENSMUSG00000045257.11|MORN repeat containing 2	ENSMUST00000061703.10|Morn2|ENSMUSG00000045257.11|MORN repeat containing 2
mm39_v1_chr4_-_43771009_43771009	0.317993	Rfx3_Rfx1_Rfx4	ENSMUST00000053931.2|Olfr159|ENSMUSG00000044801.2|olfactory receptor 159
mm39_v1_chr9_+_124195807_124195903	0.317604	Rfx3_Rfx1_Rfx4	ENSMUST00000239563.2|Ppp2r3d|ENSMUSG00000093803.6|protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
mm39_v1_chr7_-_126182347_126182425	0.314927	Rfx3_Rfx1_Rfx4	ENSMUST00000098036.9|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	ENSMUST00000032962.11|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm39_v1_chr16_+_20514925_20514963	0.313479	Rfx3_Rfx1_Rfx4	ENSMUST00000128273.2|Fam131a|ENSMUSG00000050821.15|family with sequence similarity 131, member A
mm39_v1_chr10_-_89568106_89568187	0.313353	Rfx3_Rfx1_Rfx4	ENSMUST00000020109.5|Actr6|ENSMUSG00000019948.5|ARP6 actin-related protein 6
mm39_v1_chr15_+_54609011_54609098	0.311895	Rfx3_Rfx1_Rfx4	ENSMUST00000050027.9|Ccn3|ENSMUSG00000037362.9|cellular communication network factor 3
mm39_v1_chr7_+_121666388_121666438	0.310909	Rfx3_Rfx1_Rfx4	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr6_+_48372586_48372623	0.309392	Rfx3_Rfx1_Rfx4	ENSMUST00000077093.7|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr1_+_74401267_74401315	0.309273	Rfx3_Rfx1_Rfx4	ENSMUST00000097697.8|Catip|ENSMUSG00000073650.9|ciliogenesis associated TTC17 interacting protein
mm39_v1_chr11_-_74787877_74787920	0.307536	Rfx3_Rfx1_Rfx4	ENSMUST00000057631.12|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2	ENSMUST00000081799.6|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2
mm39_v1_chr7_+_131568167_131568198	0.307507	Rfx3_Rfx1_Rfx4	ENSMUST00000045840.5|Gpr26|ENSMUSG00000040125.5|G protein-coupled receptor 26
mm39_v1_chr7_+_16550198_16550286	0.307411	Rfx3_Rfx1_Rfx4	ENSMUST00000108495.9|Strn4|ENSMUSG00000030374.16|striatin, calmodulin binding protein 4
mm39_v1_chr15_-_78058214_78058314	0.30647	Rfx3_Rfx1_Rfx4	ENSMUST00000016781.8|Ift27|ENSMUSG00000016637.8|intraflagellar transport 27
mm39_v1_chr17_-_24869241_24869301	0.305932	Rfx3_Rfx1_Rfx4	ENSMUST00000234557.2|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	ENSMUST00000002572.6|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm39_v1_chr13_-_36301466_36301570	0.302868	Rfx3_Rfx1_Rfx4	ENSMUST00000053265.8|Lyrm4|ENSMUSG00000046573.8|LYR motif containing 4
mm39_v1_chr9_+_72866067_72866147	0.301381	Rfx3_Rfx1_Rfx4	ENSMUST00000098567.9|Dnaaf4|ENSMUSG00000092192.8|dynein axonemal assembly factor 4	ENSMUST00000034734.9|Dnaaf4|ENSMUSG00000092192.8|dynein axonemal assembly factor 4
mm39_v1_chr4_+_123798690_123798709	0.29979	Rfx3_Rfx1_Rfx4	ENSMUST00000106202.4|Mycbp|ENSMUSG00000028647.14|MYC binding protein
mm39_v1_chr8_+_67943410_67943410	0.299275	Rfx3_Rfx1_Rfx4	ENSMUST00000026677.4|Nat1|ENSMUSG00000025588.5|N-acetyl transferase 1
mm39_v1_chr15_+_98468885_98468908	0.299252	Rfx3_Rfx1_Rfx4	ENSMUST00000023728.8|Tex49|ENSMUSG00000022993.8|testis expressed 49
mm39_v1_chr1_+_183170293_183170353	0.296835	Rfx3_Rfx1_Rfx4	ENSMUST00000192076.3|Taf1a|ENSMUSG00000072258.12|TATA-box binding protein associated factor, RNA polymerase I, A
mm39_v1_chr12_+_84408803_84408838	0.296225	Rfx3_Rfx1_Rfx4	ENSMUST00000110278.8|Coq6|ENSMUSG00000021235.14|coenzyme Q6 monooxygenase	ENSMUST00000145522.2|Coq6|ENSMUSG00000021235.14|coenzyme Q6 monooxygenase
mm39_v1_chr18_+_77273510_77273575	0.295626	Rfx3_Rfx1_Rfx4	ENSMUST00000075290.8|St8sia5|ENSMUSG00000025425.19|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	ENSMUST00000079618.11|St8sia5|ENSMUSG00000025425.19|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm39_v1_chr2_+_124978612_124978689	0.29484	Rfx3_Rfx1_Rfx4	ENSMUST00000099452.3|Ctxn2|ENSMUSG00000074872.4|cortexin 2	ENSMUST00000238377.2|Ctxn2|ENSMUSG00000074872.4|cortexin 2
mm39_v1_chr1_+_75213082_75213113	0.294514	Rfx3_Rfx1_Rfx4	ENSMUST00000055223.14|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2	ENSMUST00000082158.13|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2	ENSMUST00000188346.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr12_+_82216193_82216220	0.294249	Rfx3_Rfx1_Rfx4	ENSMUST00000166429.9|Sipa1l1|ENSMUSG00000042700.17|signal-induced proliferation-associated 1 like 1	ENSMUST00000220963.2|Sipa1l1|ENSMUSG00000042700.17|signal-induced proliferation-associated 1 like 1
mm39_v1_chr15_+_82140224_82140331	0.293572	Rfx3_Rfx1_Rfx4	ENSMUST00000143238.2|1500009C09Rik|ENSMUSG00000068099.6|RIKEN cDNA 1500009C09 gene
mm39_v1_chr5_-_46013838_46013895	0.293481	Rfx3_Rfx1_Rfx4	ENSMUST00000087164.10|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like	ENSMUST00000121573.8|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like
mm39_v1_chr18_-_77134939_77134976	0.291934	Rfx3_Rfx1_Rfx4	ENSMUST00000137354.8|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000137498.8|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2
mm39_v1_chr2_+_180861804_180861851	0.291487	Rfx3_Rfx1_Rfx4	ENSMUST00000050026.7|Fndc11|ENSMUSG00000047841.9|fibronectin type III domain containing 11	ENSMUST00000108835.2|Fndc11|ENSMUSG00000047841.9|fibronectin type III domain containing 11
mm39_v1_chr5_+_3621673_3621692	0.291285	Rfx3_Rfx1_Rfx4	ENSMUST00000008451.12|1700109H08Rik|ENSMUSG00000008307.12|RIKEN cDNA 1700109H08 gene
mm39_v1_chr8_-_34237752_34237809	0.289874	Rfx3_Rfx1_Rfx4	ENSMUST00000179364.3|Smim18|ENSMUSG00000094500.3|small integral membrane protein 18
mm39_v1_chr11_+_69920542_69920663	0.289552	Rfx3_Rfx1_Rfx4	ENSMUST00000232266.2|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4	ENSMUST00000132597.5|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4
mm39_v1_chr4_-_12087911_12087991	0.289444	Rfx3_Rfx1_Rfx4	ENSMUST00000050686.10|Tmem67|ENSMUSG00000049488.15|transmembrane protein 67
mm39_v1_chr7_-_44397730_44397815	0.289073	Rfx3_Rfx1_Rfx4	ENSMUST00000118162.8|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473	ENSMUST00000140599.9|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473	ENSMUST00000120798.8|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473
mm39_v1_chr19_+_4015900_4015900	0.288313	Rfx3_Rfx1_Rfx4	ENSMUST00000025794.7|Aldh3b3|ENSMUSG00000037263.14|aldehyde dehydrogenase 3 family, member B3
mm39_v1_chr7_+_18810097_18810163	0.288001	Rfx3_Rfx1_Rfx4	ENSMUST00000032570.14|Dmwd|ENSMUSG00000030410.17|dystrophia myotonica-containing WD repeat motif
mm39_v1_chr2_+_32519479_32519527	0.287787	Rfx3_Rfx1_Rfx4	ENSMUST00000068271.5|Ak1|ENSMUSG00000026817.15|adenylate kinase 1
mm39_v1_chr11_-_97242842_97242842	0.287773	Rfx3_Rfx1_Rfx4	ENSMUST00000093942.5|Gpr179|ENSMUSG00000070337.5|G protein-coupled receptor 179
mm39_v1_chr10_-_80165257_80165332	0.287435	Rfx3_Rfx1_Rfx4	ENSMUST00000020340.15|Pcsk4|ENSMUSG00000020131.15|proprotein convertase subtilisin/kexin type 4
mm39_v1_chr7_+_126549692_126549756	0.287267	Rfx3_Rfx1_Rfx4	ENSMUST00000106335.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2	ENSMUST00000146017.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr12_-_56660054_56660113	0.287182	Rfx3_Rfx1_Rfx4	ENSMUST00000072631.6|Nkx2-9|ENSMUSG00000058669.8|NK2 homeobox 9
mm39_v1_chr1_+_88139678_88139707	0.286774	Rfx3_Rfx1_Rfx4	ENSMUST00000073049.7|Ugt1a1|ENSMUSG00000089960.2|UDP glucuronosyltransferase 1 family, polypeptide A1
mm39_v1_chr4_+_110254858_110254905	0.285287	Rfx3_Rfx1_Rfx4	ENSMUST00000106589.9|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000106587.9|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000106591.8|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000106592.8|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4
mm39_v1_chr15_+_30172716_30172748	0.284612	Rfx3_Rfx1_Rfx4	ENSMUST00000081728.7|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr8_+_37460705_37460766	0.284506	Rfx3_Rfx1_Rfx4	ENSMUST00000098825.5|AI429214|ENSMUSG00000074384.5|expressed sequence AI429214
mm39_v1_chr4_+_152562599_152562644	0.284398	Rfx3_Rfx1_Rfx4	ENSMUST00000081393.10|Nphp4|ENSMUSG00000039577.18|nephronophthisis 4 (juvenile) homolog (human)
mm39_v1_chr7_-_139662402_139662469	0.283798	Rfx3_Rfx1_Rfx4	ENSMUST00000026541.15|Caly|ENSMUSG00000025468.16|calcyon neuron-specific vesicular protein	ENSMUST00000211283.2|Caly|ENSMUSG00000025468.16|calcyon neuron-specific vesicular protein
mm39_v1_chr18_+_74416161_74416203	0.282464	Rfx3_Rfx1_Rfx4	ENSMUST00000114895.4|Cfap53|ENSMUSG00000035394.12|cilia and flagella associated protein 53
mm39_v1_chr4_-_41723129_41723179	0.281548	Rfx3_Rfx1_Rfx4	ENSMUST00000171641.2|Dctn3|ENSMUSG00000028447.12|dynactin 3	ENSMUST00000030158.11|Dctn3|ENSMUSG00000028447.12|dynactin 3
mm39_v1_chr14_+_61022006_61022124	0.280951	Rfx3_Rfx1_Rfx4	ENSMUST00000063562.9|Mipep|ENSMUSG00000021993.11|mitochondrial intermediate peptidase	ENSMUST00000225043.2|Mipep|ENSMUSG00000021993.11|mitochondrial intermediate peptidase
mm39_v1_chr5_+_124802149_124802201	0.280747	Rfx3_Rfx1_Rfx4	ENSMUST00000141137.7|Dnah10|ENSMUSG00000038011.16|dynein, axonemal, heavy chain 10	ENSMUST00000058440.12|Dnah10|ENSMUSG00000038011.16|dynein, axonemal, heavy chain 10
mm39_v1_chr15_+_102353802_102353883	0.280383	Rfx3_Rfx1_Rfx4	ENSMUST00000023809.11|Amhr2|ENSMUSG00000023047.12|anti-Mullerian hormone type 2 receptor	ENSMUST00000229278.2|Amhr2|ENSMUSG00000023047.12|anti-Mullerian hormone type 2 receptor	ENSMUST00000229566.2|Amhr2|ENSMUSG00000023047.12|anti-Mullerian hormone type 2 receptor
mm39_v1_chr11_+_85061922_85061930	0.280246	Rfx3_Rfx1_Rfx4	ENSMUST00000018623.4|1700125H20Rik|ENSMUSG00000018479.13|RIKEN cDNA 1700125H20 gene
mm39_v1_chr6_+_48425034_48425163	0.27853	Rfx3_Rfx1_Rfx4	ENSMUST00000212740.2|Sspo|ENSMUSG00000029797.14|SCO-spondin	ENSMUST00000169350.9|Sspo|ENSMUSG00000029797.14|SCO-spondin	ENSMUST00000043676.12|Sspo|ENSMUSG00000029797.14|SCO-spondin
mm39_v1_chr4_+_155171034_155171067	0.276827	Rfx3_Rfx1_Rfx4	ENSMUST00000030915.11|Morn1|ENSMUSG00000029049.15|MORN repeat containing 1	ENSMUST00000155775.8|Morn1|ENSMUSG00000029049.15|MORN repeat containing 1	ENSMUST00000127457.2|Morn1|ENSMUSG00000029049.15|MORN repeat containing 1
mm39_v1_chr10_-_128481833_128481881	0.275936	Rfx3_Rfx1_Rfx4	ENSMUST00000133342.10|Ikzf4|ENSMUSG00000002578.19|IKAROS family zinc finger 4
mm39_v1_chr6_+_48372520_48372580	0.275628	Rfx3_Rfx1_Rfx4	ENSMUST00000114571.8|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1	ENSMUST00000031815.12|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1	ENSMUST00000203371.3|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr9_+_107440484_107440569	0.274122	Rfx3_Rfx1_Rfx4	ENSMUST00000193418.2|Tusc2|ENSMUSG00000010054.5|tumor suppressor 2, mitochondrial calcium regulator
mm39_v1_chr6_-_136852792_136852821	0.273211	Rfx3_Rfx1_Rfx4	ENSMUST00000032342.3|Mgp|ENSMUSG00000030218.3|matrix Gla protein
mm39_v1_chr8_+_72044873_72044935	0.272202	Rfx3_Rfx1_Rfx4	ENSMUST00000138742.8|Pgls|ENSMUSG00000031807.11|6-phosphogluconolactonase	ENSMUST00000143441.2|Pgls|ENSMUSG00000031807.11|6-phosphogluconolactonase
mm39_v1_chr15_-_88863210_88863210	0.270593	Rfx3_Rfx1_Rfx4	ENSMUST00000042594.13|Mlc1|ENSMUSG00000035805.14|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	ENSMUST00000109368.2|Mlc1|ENSMUSG00000035805.14|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm39_v1_chr6_-_119307685_119307761	0.270291	Rfx3_Rfx1_Rfx4	ENSMUST00000112756.8|Lrtm2|ENSMUSG00000055003.15|leucine-rich repeats and transmembrane domains 2	ENSMUST00000068351.14|Lrtm2|ENSMUSG00000055003.15|leucine-rich repeats and transmembrane domains 2
mm39_v1_chr4_-_62126598_62126660	0.26825	Rfx3_Rfx1_Rfx4	ENSMUST00000221329.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37	ENSMUST00000129511.3|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr11_-_119190896_119190915	0.268079	Rfx3_Rfx1_Rfx4	ENSMUST00000026667.15|Eif4a3|ENSMUSG00000025580.16|eukaryotic translation initiation factor 4A3
mm39_v1_chr8_+_78939920_78940003	0.267976	Rfx3_Rfx1_Rfx4	ENSMUST00000117845.8|Ttc29|ENSMUSG00000037101.17|tetratricopeptide repeat domain 29	ENSMUST00000126172.8|Ttc29|ENSMUSG00000037101.17|tetratricopeptide repeat domain 29	ENSMUST00000049395.15|Ttc29|ENSMUSG00000037101.17|tetratricopeptide repeat domain 29
mm39_v1_chr10_+_23836392_23836392	0.267007	Rfx3_Rfx1_Rfx4	ENSMUST00000092660.2|Taar4|ENSMUSG00000069707.2|trace amine-associated receptor 4
mm39_v1_chr2_+_36026395_36026441	0.26676	Rfx3_Rfx1_Rfx4	ENSMUST00000028250.9|Mrrf|ENSMUSG00000026887.10|mitochondrial ribosome recycling factor
mm39_v1_chr10_+_42736345_42736373	0.266609	Rfx3_Rfx1_Rfx4	ENSMUST00000063063.14|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr5_-_103359117_103359200	0.266592	Rfx3_Rfx1_Rfx4	ENSMUST00000112846.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10	ENSMUST00000170792.9|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10	ENSMUST00000112847.9|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10	ENSMUST00000238446.3|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10	ENSMUST00000133069.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr11_+_50894423_50894423	0.265737	Rfx3_Rfx1_Rfx4	ENSMUST00000213415.2|Olfr51|ENSMUSG00000060918.3|olfactory receptor 51
mm39_v1_chr8_+_72044802_72044866	0.262873	Rfx3_Rfx1_Rfx4	ENSMUST00000034264.11|Pgls|ENSMUSG00000031807.11|6-phosphogluconolactonase
mm39_v1_chr17_+_49922129_49922200	0.26276	Rfx3_Rfx1_Rfx4	ENSMUST00000162854.2|Kif6|ENSMUSG00000023999.15|kinesin family member 6
mm39_v1_chr3_+_156267429_156267507	0.262157	Rfx3_Rfx1_Rfx4	ENSMUST00000074015.11|Negr1|ENSMUSG00000040037.14|neuronal growth regulator 1
mm39_v1_chr12_+_11316101_11316179	0.260305	Rfx3_Rfx1_Rfx4	ENSMUST00000218866.2|Smc6|ENSMUSG00000020608.8|structural maintenance of chromosomes 6
mm39_v1_chr1_+_66426127_66426159	0.258131	Rfx3_Rfx1_Rfx4	ENSMUST00000145419.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr19_+_47167554_47167615	0.256038	Rfx3_Rfx1_Rfx4	ENSMUST00000235290.2|Neurl1a|ENSMUSG00000006435.17|neuralized E3 ubiquitin protein ligase 1A
mm39_v1_chr7_-_92286287_92286355	0.256002	Rfx3_Rfx1_Rfx4	ENSMUST00000056106.14|Ankrd42|ENSMUSG00000041343.20|ankyrin repeat domain 42	ENSMUST00000138267.2|Ankrd42|ENSMUSG00000041343.20|ankyrin repeat domain 42	ENSMUST00000118157.8|Ankrd42|ENSMUSG00000041343.20|ankyrin repeat domain 42
mm39_v1_chr13_-_38819012_38819096	0.254261	Rfx3_Rfx1_Rfx4	ENSMUST00000224902.2|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted	ENSMUST00000224115.2|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted	ENSMUST00000035899.8|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted
mm39_v1_chr17_-_80884839_80884913	0.253735	Rfx3_Rfx1_Rfx4	ENSMUST00000234349.2|Cdkl4|ENSMUSG00000033966.9|cyclin-dependent kinase-like 4
mm39_v1_chr6_+_48372771_48372807	0.253369	Rfx3_Rfx1_Rfx4	ENSMUST00000114572.9|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr4_+_125990416_125990522	0.253063	Rfx3_Rfx1_Rfx4	ENSMUST00000055575.8|Lsm10|ENSMUSG00000050188.9|U7 snRNP-specific Sm-like protein LSM10	ENSMUST00000179323.2|Lsm10|ENSMUSG00000050188.9|U7 snRNP-specific Sm-like protein LSM10	ENSMUST00000151831.2|Lsm10|ENSMUSG00000050188.9|U7 snRNP-specific Sm-like protein LSM10
mm39_v1_chr16_+_17437367_17437381	0.252724	Rfx3_Rfx1_Rfx4	ENSMUST00000231887.2|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4
mm39_v1_chr18_-_77134980_77135009	0.252351	Rfx3_Rfx1_Rfx4	ENSMUST00000154665.2|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000026486.13|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000123650.2|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000126153.8|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2
mm39_v1_chr9_-_20553576_20553618	0.252125	Rfx3_Rfx1_Rfx4	ENSMUST00000155301.8|Fbxl12|ENSMUSG00000066892.15|F-box and leucine-rich repeat protein 12
mm39_v1_chr14_-_20502285_20502310	0.249848	Rfx3_Rfx1_Rfx4	ENSMUST00000056073.14|Cfap70|ENSMUSG00000039543.17|cilia and flagella associated protein 70	ENSMUST00000022349.14|Cfap70|ENSMUSG00000039543.17|cilia and flagella associated protein 70	ENSMUST00000022348.15|Cfap70|ENSMUSG00000039543.17|cilia and flagella associated protein 70
mm39_v1_chr9_-_54408780_54408928	0.247596	Rfx3_Rfx1_Rfx4	ENSMUST00000118600.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2	ENSMUST00000118163.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2
mm39_v1_chr6_-_33037107_33037187	0.247544	Rfx3_Rfx1_Rfx4	ENSMUST00000115091.2|Chchd3|ENSMUSG00000053768.14|coiled-coil-helix-coiled-coil-helix domain containing 3	ENSMUST00000127666.8|Chchd3|ENSMUSG00000053768.14|coiled-coil-helix-coiled-coil-helix domain containing 3
mm39_v1_chr10_-_128383508_128383643	0.246883	Rfx3_Rfx1_Rfx4	ENSMUST00000152539.8|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10	ENSMUST00000133458.2|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10	ENSMUST00000040572.10|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10
mm39_v1_chr11_-_116357047_116357067	0.246511	Rfx3_Rfx1_Rfx4	ENSMUST00000208602.2|Qrich2|ENSMUSG00000070331.15|glutamine rich 2
mm39_v1_chr17_-_24217068_24217083	0.244496	Rfx3_Rfx1_Rfx4	ENSMUST00000041649.8|Prss22|ENSMUSG00000045027.8|protease, serine 22
mm39_v1_chr7_+_140462343_140462385	0.244156	Rfx3_Rfx1_Rfx4	ENSMUST00000163610.9|Psmd13|ENSMUSG00000025487.16|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	ENSMUST00000164681.8|Psmd13|ENSMUSG00000025487.16|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm39_v1_chr10_+_81442137_81442137	0.24332	Rfx3_Rfx1_Rfx4	ENSMUST00000119492.2|BC025920|ENSMUSG00000074862.12|cDNA sequence BC025920
mm39_v1_chr4_-_62126662_62126724	0.243228	Rfx3_Rfx1_Rfx4	ENSMUST00000222050.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37	ENSMUST00000068822.4|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr2_-_91274967_91275071	0.243211	Rfx3_Rfx1_Rfx4	ENSMUST00000064652.14|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene	ENSMUST00000102594.11|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene	ENSMUST00000094835.9|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene
mm39_v1_chr5_-_30703180_30703195	0.243094	Rfx3_Rfx1_Rfx4	ENSMUST00000065486.3|Cib4|ENSMUSG00000053194.3|calcium and integrin binding family member 4
mm39_v1_chr12_+_72986665_72986674	0.242198	Rfx3_Rfx1_Rfx4	ENSMUST00000021519.7|Six6|ENSMUSG00000021099.7|sine oculis-related homeobox 6
mm39_v1_chr19_+_3332901_3333073	0.241556	Rfx3_Rfx1_Rfx4	ENSMUST00000025745.10|Mrpl21|ENSMUSG00000024829.13|mitochondrial ribosomal protein L21	ENSMUST00000025743.7|Mrpl21|ENSMUSG00000024829.13|mitochondrial ribosomal protein L21
mm39_v1_chr4_+_118477994_118478105	0.241022	Rfx3_Rfx1_Rfx4	ENSMUST00000030501.15|Ebna1bp2|ENSMUSG00000028729.16|EBNA1 binding protein 2
mm39_v1_chr16_-_17379103_17379118	0.239148	Rfx3_Rfx1_Rfx4	ENSMUST00000232637.2|Lrrc74b|ENSMUSG00000022759.16|leucine rich repeat containing 74B	ENSMUST00000100123.10|Lrrc74b|ENSMUSG00000022759.16|leucine rich repeat containing 74B	ENSMUST00000023442.13|Lrrc74b|ENSMUSG00000022759.16|leucine rich repeat containing 74B
mm39_v1_chr2_-_101459274_101459301	0.238984	Rfx3_Rfx1_Rfx4	ENSMUST00000099682.9|Iftap|ENSMUSG00000027165.17|intraflagellar transport associated protein
mm39_v1_chr13_+_46427176_46427197	0.238739	Rfx3_Rfx1_Rfx4	ENSMUST00000076622.4|Stmnd1|ENSMUSG00000063529.4|stathmin domain containing 1
mm39_v1_chr4_-_118401185_118401270	0.236987	Rfx3_Rfx1_Rfx4	ENSMUST00000128098.8|Tmem125|ENSMUSG00000050854.10|transmembrane protein 125
mm39_v1_chr11_+_76297969_76298029	0.236769	Rfx3_Rfx1_Rfx4	ENSMUST00000021203.7|Timm22|ENSMUSG00000020843.16|translocase of inner mitochondrial membrane 22	ENSMUST00000152183.2|Timm22|ENSMUSG00000020843.16|translocase of inner mitochondrial membrane 22
mm39_v1_chr7_+_27207226_27207285	0.236764	Rfx3_Rfx1_Rfx4	ENSMUST00000125990.2|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000065487.7|Prx|ENSMUSG00000053198.15|periaxin
mm39_v1_chr7_+_139414057_139414090	0.235473	Rfx3_Rfx1_Rfx4	ENSMUST00000026548.14|Adgra1|ENSMUSG00000025475.18|adhesion G protein-coupled receptor A1
mm39_v1_chr6_-_39702381_39702413	0.234418	Rfx3_Rfx1_Rfx4	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr13_-_53531391_53531433	0.233574	Rfx3_Rfx1_Rfx4	ENSMUST00000021920.8|Sptlc1|ENSMUSG00000021468.9|serine palmitoyltransferase, long chain base subunit 1
mm39_v1_chr14_-_30723549_30723629	0.233475	Rfx3_Rfx1_Rfx4	ENSMUST00000226782.2|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)	ENSMUST00000186131.7|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)	ENSMUST00000228767.2|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm39_v1_chr2_-_118987305_118987515	0.23304	Rfx3_Rfx1_Rfx4	ENSMUST00000135419.8|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3	ENSMUST00000129351.2|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3	ENSMUST00000139519.2|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3	ENSMUST00000094695.12|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3
mm39_v1_chr13_+_113124336_113124374	0.230837	Rfx3_Rfx1_Rfx4	ENSMUST00000038404.6|Ccno|ENSMUSG00000042417.6|cyclin O
mm39_v1_chr19_+_4175934_4176000	0.230152	Rfx3_Rfx1_Rfx4	ENSMUST00000169055.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000135257.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000138593.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000140267.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000137579.6|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000139987.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000150627.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000151401.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000153654.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134
mm39_v1_chr7_-_45343785_45343835	0.229428	Rfx3_Rfx1_Rfx4	ENSMUST00000040636.9|Sec1|ENSMUSG00000040364.9|secretory blood group 1
mm39_v1_chr10_-_81243475_81243515	0.228433	Rfx3_Rfx1_Rfx4	ENSMUST00000140916.8|Nfic|ENSMUSG00000055053.19|nuclear factor I/C
mm39_v1_chr11_-_69768875_69768883	0.228065	Rfx3_Rfx1_Rfx4	ENSMUST00000178597.3|Tmem95|ENSMUSG00000094845.3|transmembrane protein 95
mm39_v1_chr5_-_24049079_24049159	0.226568	Rfx3_Rfx1_Rfx4	ENSMUST00000030851.7|Tomm7|ENSMUSG00000028998.7|translocase of outer mitochondrial membrane 7
mm39_v1_chr3_+_156267587_156267631	0.226165	Rfx3_Rfx1_Rfx4	ENSMUST00000041425.12|Negr1|ENSMUSG00000040037.14|neuronal growth regulator 1	ENSMUST00000106065.2|Negr1|ENSMUSG00000040037.14|neuronal growth regulator 1
mm39_v1_chr10_-_128481649_128481708	0.226021	Rfx3_Rfx1_Rfx4	ENSMUST00000221150.2|Ikzf4|ENSMUSG00000002578.19|IKAROS family zinc finger 4
mm39_v1_chr1_+_24717793_24717839	0.225996	Rfx3_Rfx1_Rfx4	ENSMUST00000186190.2|Lmbrd1|ENSMUSG00000073725.9|LMBR1 domain containing 1
mm39_v1_chr16_+_43710163_43710183	0.224584	Rfx3_Rfx1_Rfx4	ENSMUST00000132859.8|Ccdc191|ENSMUSG00000022701.19|coiled-coil domain containing 191	ENSMUST00000178400.9|Ccdc191|ENSMUSG00000022701.19|coiled-coil domain containing 191
mm39_v1_chr7_+_126550009_126550138	0.223834	Rfx3_Rfx1_Rfx4	ENSMUST00000106332.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chrX_-_101114794_101114808	0.222929	Rfx3_Rfx1_Rfx4	ENSMUST00000113631.2|Rtl5|ENSMUSG00000049191.13|retrotransposon Gag like 5
mm39_v1_chr17_+_34174782_34174793	0.220164	Rfx3_Rfx1_Rfx4	ENSMUST00000025178.17|Vps52|ENSMUSG00000024319.19|VPS52 GARP complex subunit
mm39_v1_chr1_+_172309337_172309355	0.219127	Rfx3_Rfx1_Rfx4	ENSMUST00000127052.8|Igsf9|ENSMUSG00000037995.16|immunoglobulin superfamily, member 9
mm39_v1_chrX_+_73784533_73784533	0.218996	Rfx3_Rfx1_Rfx4	ENSMUST00000114117.2|Ctag2l2|ENSMUSG00000079532.2|CTAG2 like 2
mm39_v1_chr13_+_22129246_22129316	0.217735	Rfx3_Rfx1_Rfx4	ENSMUST00000176511.8|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)	ENSMUST00000102978.8|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)	ENSMUST00000152258.9|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)
mm39_v1_chr7_-_133966588_133966613	0.215883	Rfx3_Rfx1_Rfx4	ENSMUST00000172947.8|D7Ertd443e|ENSMUSG00000030994.17|DNA segment, Chr 7, ERATO Doi 443, expressed
mm39_v1_chr6_-_91450486_91450534	0.215784	Rfx3_Rfx1_Rfx4	ENSMUST00000040835.9|Chchd4|ENSMUSG00000034203.9|coiled-coil-helix-coiled-coil-helix domain containing 4
mm39_v1_chr9_-_105272435_105272488	0.214998	Rfx3_Rfx1_Rfx4	ENSMUST00000140851.3|Nek11|ENSMUSG00000035032.13|NIMA (never in mitosis gene a)-related expressed kinase 11
mm39_v1_chr18_-_43820759_43820838	0.214812	Rfx3_Rfx1_Rfx4	ENSMUST00000082254.8|Jakmip2|ENSMUSG00000024502.11|janus kinase and microtubule interacting protein 2
mm39_v1_chr7_+_79882609_79882693	0.214484	Rfx3_Rfx1_Rfx4	ENSMUST00000062915.9|Gdpgp1|ENSMUSG00000050973.12|GDP-D-glucose phosphorylase 1
mm39_v1_chr18_+_36481706_36481787	0.213763	Rfx3_Rfx1_Rfx4	ENSMUST00000235864.2|Cystm1|ENSMUSG00000046727.14|cysteine-rich transmembrane module containing 1	ENSMUST00000050584.10|Cystm1|ENSMUSG00000046727.14|cysteine-rich transmembrane module containing 1
mm39_v1_chr7_+_126549859_126549901	0.213588	Rfx3_Rfx1_Rfx4	ENSMUST00000106333.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr17_-_37262495_37262633	0.211459	Rfx3_Rfx1_Rfx4	ENSMUST00000040402.14|Ppp1r11|ENSMUSG00000036398.14|protein phosphatase 1, regulatory inhibitor subunit 11	ENSMUST00000174711.8|Ppp1r11|ENSMUSG00000036398.14|protein phosphatase 1, regulatory inhibitor subunit 11
mm39_v1_chr8_+_13755884_13755967	0.210553	Rfx3_Rfx1_Rfx4	ENSMUST00000166277.5|Cfap97d2|ENSMUSG00000090336.6|CFAP97 domain containing 2	ENSMUST00000214337.2|Cfap97d2|ENSMUSG00000090336.6|CFAP97 domain containing 2
mm39_v1_chr1_-_53745920_53745999	0.209428	Rfx3_Rfx1_Rfx4	ENSMUST00000094964.7|Dnah7a|ENSMUSG00000096141.3|dynein, axonemal, heavy chain 7A
mm39_v1_chr10_-_89457115_89457138	0.208824	Rfx3_Rfx1_Rfx4	ENSMUST00000020102.14|Slc17a8|ENSMUSG00000019935.17|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
mm39_v1_chrX_+_7750261_7750294	0.207811	Rfx3_Rfx1_Rfx4	ENSMUST00000115660.12|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2
mm39_v1_chr7_-_89914610_89914652	0.207706	Rfx3_Rfx1_Rfx4	ENSMUST00000107221.9|Ccdc83|ENSMUSG00000030617.14|coiled-coil domain containing 83	ENSMUST00000107220.8|Ccdc83|ENSMUSG00000030617.14|coiled-coil domain containing 83	ENSMUST00000040413.2|Ccdc83|ENSMUSG00000030617.14|coiled-coil domain containing 83
mm39_v1_chr10_+_60235628_60235683	0.206602	Rfx3_Rfx1_Rfx4	ENSMUST00000218974.2|Gm17455|ENSMUSG00000090439.4|predicted gene, 17455
mm39_v1_chr7_-_24950145_24950186	0.20654	Rfx3_Rfx1_Rfx4	ENSMUST00000116343.3|Erf|ENSMUSG00000040857.16|Ets2 repressor factor	ENSMUST00000045847.15|Erf|ENSMUSG00000040857.16|Ets2 repressor factor
mm39_v1_chr2_+_164339438_164339480	0.206065	Rfx3_Rfx1_Rfx4	ENSMUST00000103101.11|Pigt|ENSMUSG00000017721.16|phosphatidylinositol glycan anchor biosynthesis, class T	ENSMUST00000117066.8|Pigt|ENSMUSG00000017721.16|phosphatidylinositol glycan anchor biosynthesis, class T
mm39_v1_chr10_+_119828867_119828975	0.205806	Rfx3_Rfx1_Rfx4	ENSMUST00000154238.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1
mm39_v1_chr4_+_99717671_99717737	0.205677	Rfx3_Rfx1_Rfx4	ENSMUST00000239518.1|Efcab7|ENSMUSG00000073791.14|EF-hand calcium binding domain 7	ENSMUST00000239520.1|Efcab7|ENSMUSG00000073791.14|EF-hand calcium binding domain 7	ENSMUST00000136874.4|Efcab7|ENSMUSG00000073791.14|EF-hand calcium binding domain 7
mm39_v1_chr10_-_78588884_78588910	0.205522	Rfx3_Rfx1_Rfx4	ENSMUST00000105383.4|Ccdc105|ENSMUSG00000078442.4|coiled-coil domain containing 105
mm39_v1_chr11_+_78427181_78427194	0.205023	Rfx3_Rfx1_Rfx4	ENSMUST00000128788.8|Ift20|ENSMUSG00000001105.16|intraflagellar transport 20
mm39_v1_chrX_+_47712676_47712839	0.205018	Rfx3_Rfx1_Rfx4	ENSMUST00000177710.2|Slc25a14|ENSMUSG00000031105.17|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm39_v1_chr18_-_70663382_70663505	0.204524	Rfx3_Rfx1_Rfx4	ENSMUST00000043286.15|Poli|ENSMUSG00000038425.19|polymerase (DNA directed), iota
mm39_v1_chr11_+_70057449_70057557	0.203959	Rfx3_Rfx1_Rfx4	ENSMUST00000102571.10|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A	ENSMUST00000178945.8|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A	ENSMUST00000000327.13|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A	ENSMUST00000178567.3|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A
mm39_v1_chr3_+_65016750_65016838	0.203644	Rfx3_Rfx1_Rfx4	ENSMUST00000049230.11|Kcnab1|ENSMUSG00000027827.18|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm39_v1_chr18_+_36481792_36481832	0.202666	Rfx3_Rfx1_Rfx4	ENSMUST00000152804.9|Cystm1|ENSMUSG00000046727.14|cysteine-rich transmembrane module containing 1
mm39_v1_chr16_+_31918707_31918791	0.20137	Rfx3_Rfx1_Rfx4	ENSMUST00000042869.7|Cep19|ENSMUSG00000035790.16|centrosomal protein 19
mm39_v1_chr11_+_43365103_43365168	0.201177	Rfx3_Rfx1_Rfx4	ENSMUST00000173002.8|C1qtnf2|ENSMUSG00000046491.11|C1q and tumor necrosis factor related protein 2	ENSMUST00000057679.10|C1qtnf2|ENSMUSG00000046491.11|C1q and tumor necrosis factor related protein 2
mm39_v1_chr12_-_55867881_55867903	0.200204	Rfx3_Rfx1_Rfx4	ENSMUST00000219432.2|Ralgapa1|ENSMUSG00000021027.18|Ral GTPase activating protein, alpha subunit 1
mm39_v1_chr18_-_32595515_32595525	0.199159	Rfx3_Rfx1_Rfx4	ENSMUST00000207669.2|Gm35060|ENSMUSG00000109238.3|predicted gene, 35060
mm39_v1_chr7_+_43425689_43425753	0.198536	Rfx3_Rfx1_Rfx4	ENSMUST00000171458.2|Klk11|ENSMUSG00000067616.12|kallikrein related-peptidase 11
mm39_v1_chr14_+_70793340_70793340	0.197631	Rfx3_Rfx1_Rfx4	ENSMUST00000163060.2|Hr|ENSMUSG00000022096.15|lysine demethylase and nuclear receptor corepressor
mm39_v1_chr6_+_88061464_88061509	0.196678	Rfx3_Rfx1_Rfx4	ENSMUST00000032143.8|Rpn1|ENSMUSG00000030062.8|ribophorin I
mm39_v1_chr11_+_78136569_78136646	0.196377	Rfx3_Rfx1_Rfx4	ENSMUST00000002133.9|Sdf2|ENSMUSG00000002064.11|stromal cell derived factor 2
mm39_v1_chr12_-_105188965_105188982	0.195986	Rfx3_Rfx1_Rfx4	ENSMUST00000176579.2|Tcl1|ENSMUSG00000041359.15|T cell lymphoma breakpoint 1	ENSMUST00000101071.4|Tcl1|ENSMUSG00000041359.15|T cell lymphoma breakpoint 1
mm39_v1_chr6_-_146855880_146855928	0.195784	Rfx3_Rfx1_Rfx4	ENSMUST00000111622.2|1700034J05Rik|ENSMUSG00000040163.15|RIKEN cDNA 1700034J05 gene	ENSMUST00000036592.15|1700034J05Rik|ENSMUSG00000040163.15|RIKEN cDNA 1700034J05 gene
mm39_v1_chr11_+_78427219_78427318	0.195711	Rfx3_Rfx1_Rfx4	ENSMUST00000050366.15|Ift20|ENSMUSG00000001105.16|intraflagellar transport 20	ENSMUST00000108275.2|Ift20|ENSMUSG00000001105.16|intraflagellar transport 20
mm39_v1_chr4_-_56741398_56741443	0.194677	Rfx3_Rfx1_Rfx4	ENSMUST00000095080.5|Actl7b|ENSMUSG00000070980.5|actin-like 7b
mm39_v1_chr3_+_124114504_124114504	0.194579	Rfx3_Rfx1_Rfx4	ENSMUST00000058994.6|Tram1l1|ENSMUSG00000044528.6|translocation associated membrane protein 1-like 1
mm39_v1_chr9_+_107440445_107440479	0.191259	Rfx3_Rfx1_Rfx4	ENSMUST00000010198.5|Tusc2|ENSMUSG00000010054.5|tumor suppressor 2, mitochondrial calcium regulator
mm39_v1_chr12_-_105188993_105189005	0.18946	Rfx3_Rfx1_Rfx4	ENSMUST00000041316.15|Tcl1|ENSMUSG00000041359.15|T cell lymphoma breakpoint 1
mm39_v1_chr11_-_120358239_120358426	0.189226	Rfx3_Rfx1_Rfx4	ENSMUST00000076921.7|Arl16|ENSMUSG00000057594.13|ADP-ribosylation factor-like 16
mm39_v1_chr1_-_156248716_156248729	0.189075	Rfx3_Rfx1_Rfx4	ENSMUST00000178036.8|Axdnd1|ENSMUSG00000026601.15|axonemal dynein light chain domain containing 1
mm39_v1_chr4_-_11076159_11076211	0.188774	Rfx3_Rfx1_Rfx4	ENSMUST00000058183.9|Ndufaf6|ENSMUSG00000050323.15|NADH:ubiquinone oxidoreductase complex assembly factor 6
mm39_v1_chr9_-_108888779_108888840	0.188692	Rfx3_Rfx1_Rfx4	ENSMUST00000061973.5|Trex1|ENSMUSG00000049734.10|three prime repair exonuclease 1
mm39_v1_chr6_+_89860642_89860642	0.187577	Rfx3_Rfx1_Rfx4	ENSMUST00000226345.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000204656.3|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227456.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227047.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000226120.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227888.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000228183.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227625.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44
mm39_v1_chr1_-_180524587_180524599	0.187131	Rfx3_Rfx1_Rfx4	ENSMUST00000027778.8|Mixl1|ENSMUSG00000026497.8|Mix1 homeobox-like 1 (Xenopus laevis)
mm39_v1_chr17_+_9207180_9207227	0.184682	Rfx3_Rfx1_Rfx4	ENSMUST00000151609.2|1700010I14Rik|ENSMUSG00000023873.14|RIKEN cDNA 1700010I14 gene	ENSMUST00000232775.2|1700010I14Rik|ENSMUSG00000023873.14|RIKEN cDNA 1700010I14 gene	ENSMUST00000136954.3|1700010I14Rik|ENSMUSG00000023873.14|RIKEN cDNA 1700010I14 gene
mm39_v1_chr6_+_42377172_42377172	0.184356	Rfx3_Rfx1_Rfx4	ENSMUST00000057398.4|Tas2r143|ENSMUSG00000046652.4|taste receptor, type 2, member 143
mm39_v1_chr8_-_26087552_26087615	0.184328	Rfx3_Rfx1_Rfx4	ENSMUST00000210234.2|Letm2|ENSMUSG00000037363.10|leucine zipper-EF-hand containing transmembrane protein 2	ENSMUST00000211422.2|Letm2|ENSMUSG00000037363.10|leucine zipper-EF-hand containing transmembrane protein 2
mm39_v1_chr15_+_38219447_38219548	0.18348	Rfx3_Rfx1_Rfx4	ENSMUST00000081966.5|Odf1|ENSMUSG00000061923.5|outer dense fiber of sperm tails 1
mm39_v1_chr8_-_65471175_65471240	0.181977	Rfx3_Rfx1_Rfx4	ENSMUST00000078409.5|Trim61|ENSMUSG00000109718.2|tripartite motif-containing 61	ENSMUST00000048565.9|Trim60|ENSMUSG00000053490.9|tripartite motif-containing 60
mm39_v1_chr10_+_41179966_41179976	0.181821	Rfx3_Rfx1_Rfx4	ENSMUST00000173494.4|Ak9|ENSMUSG00000091415.6|adenylate kinase 9
mm39_v1_chr5_+_136937035_136937056	0.181585	Rfx3_Rfx1_Rfx4	ENSMUST00000199101.5|Ift22|ENSMUSG00000007987.13|intraflagellar transport 22	ENSMUST00000200153.5|Ift22|ENSMUSG00000007987.13|intraflagellar transport 22
mm39_v1_chr19_-_23630143_23630185	0.180803	Rfx3_Rfx1_Rfx4	ENSMUST00000035849.5|1700028P14Rik|ENSMUSG00000033053.5|RIKEN cDNA 1700028P14 gene
mm39_v1_chrX_-_72380446_72380446	0.180356	Rfx3_Rfx1_Rfx4	ENSMUST00000207943.2|Gm45015|ENSMUSG00000109368.2|predicted gene 45015
mm39_v1_chr5_+_73808718_73808737	0.179018	Rfx3_Rfx1_Rfx4	ENSMUST00000071077.14|Spata18|ENSMUSG00000029155.17|spermatogenesis associated 18
mm39_v1_chr15_-_83006957_83007002	0.178069	Rfx3_Rfx1_Rfx4	ENSMUST00000018184.10|Rrp7a|ENSMUSG00000018040.10|ribosomal RNA processing 7 homolog A
mm39_v1_chr4_+_117407517_117407606	0.177447	Rfx3_Rfx1_Rfx4	ENSMUST00000037127.15|Eri3|ENSMUSG00000033423.17|exoribonuclease 3
mm39_v1_chr2_-_87322762_87322762	0.176372	Rfx3_Rfx1_Rfx4	ENSMUST00000026957.4|Pramel7|ENSMUSG00000025839.4|PRAME like 7
mm39_v1_chr8_+_46080746_46080791	0.176243	Rfx3_Rfx1_Rfx4	ENSMUST00000145458.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000134321.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr18_+_48178397_48178415	0.176077	Rfx3_Rfx1_Rfx4	ENSMUST00000076155.6|Eno1b|ENSMUSG00000059040.6|enolase 1B, retrotransposed
mm39_v1_chr4_+_123798625_123798643	0.174775	Rfx3_Rfx1_Rfx4	ENSMUST00000030400.14|Mycbp|ENSMUSG00000028647.14|MYC binding protein
mm39_v1_chr10_-_79973210_79973276	0.174734	Rfx3_Rfx1_Rfx4	ENSMUST00000170219.9|Cbarp|ENSMUSG00000035640.19|calcium channel, voltage-dependent, beta subunit associated regulatory protein	ENSMUST00000169546.9|Cbarp|ENSMUSG00000035640.19|calcium channel, voltage-dependent, beta subunit associated regulatory protein
mm39_v1_chr7_-_101765915_101765926	0.173866	Rfx3_Rfx1_Rfx4	ENSMUST00000084830.2|Chrna10|ENSMUSG00000066279.4|cholinergic receptor, nicotinic, alpha polypeptide 10
mm39_v1_chrX_-_36432482_36432509	0.17347	Rfx3_Rfx1_Rfx4	ENSMUST00000046557.6|Akap14|ENSMUSG00000036551.7|A kinase (PRKA) anchor protein 14
mm39_v1_chr18_-_70663209_70663355	0.171394	Rfx3_Rfx1_Rfx4	ENSMUST00000161542.8|Poli|ENSMUSG00000038425.19|polymerase (DNA directed), iota	ENSMUST00000159389.8|Poli|ENSMUSG00000038425.19|polymerase (DNA directed), iota
mm39_v1_chr7_-_104854362_104854362	0.168213	Rfx3_Rfx1_Rfx4	ENSMUST00000216613.2|Olfr686|ENSMUSG00000048425.4|olfactory receptor 686
mm39_v1_chr4_+_58943574_58943638	0.167913	Rfx3_Rfx1_Rfx4	ENSMUST00000107554.2|Zkscan16|ENSMUSG00000038630.9|zinc finger with KRAB and SCAN domains 16
mm39_v1_chr2_+_119119218_119119252	0.167544	Rfx3_Rfx1_Rfx4	ENSMUST00000037280.5|Vps18|ENSMUSG00000034216.13|VPS18 CORVET/HOPS core subunit
mm39_v1_chr7_-_4535403_4535469	0.166489	Rfx3_Rfx1_Rfx4	ENSMUST00000094897.5|Dnaaf3|ENSMUSG00000055809.8|dynein, axonemal assembly factor 3
mm39_v1_chr17_-_23902992_23903005	0.166011	Rfx3_Rfx1_Rfx4	ENSMUST00000085989.8|Cldn9|ENSMUSG00000066720.8|claudin 9
mm39_v1_chr8_+_84262409_84262409	0.165886	Rfx3_Rfx1_Rfx4	ENSMUST00000214156.2|Olfr370|ENSMUSG00000047286.8|olfactory receptor 370	ENSMUST00000209408.4|Olfr370|ENSMUSG00000047286.8|olfactory receptor 370
mm39_v1_chr16_+_4559426_4559452	0.165561	Rfx3_Rfx1_Rfx4	ENSMUST00000120232.8|Hmox2|ENSMUSG00000004070.16|heme oxygenase 2
mm39_v1_chr9_-_50639230_50639308	0.165337	Rfx3_Rfx1_Rfx4	ENSMUST00000118707.2|Dixdc1|ENSMUSG00000032064.18|DIX domain containing 1	ENSMUST00000034566.15|Dixdc1|ENSMUSG00000032064.18|DIX domain containing 1
mm39_v1_chr3_+_30702035_30702083	0.165186	Rfx3_Rfx1_Rfx4	ENSMUST00000108265.3|Lrriq4|ENSMUSG00000027703.17|leucine-rich repeats and IQ motif containing 4
mm39_v1_chr1_+_69866145_69866162	0.164898	Rfx3_Rfx1_Rfx4	ENSMUST00000065425.12|Spag16|ENSMUSG00000053153.15|sperm associated antigen 16	ENSMUST00000113940.4|Spag16|ENSMUSG00000053153.15|sperm associated antigen 16
mm39_v1_chr8_+_66964401_66964417	0.164896	Rfx3_Rfx1_Rfx4	ENSMUST00000002025.5|Tktl2|ENSMUSG00000025519.6|transketolase-like 2	ENSMUST00000183187.2|Tktl2|ENSMUSG00000025519.6|transketolase-like 2
mm39_v1_chr16_-_64591509_64591546	0.164669	Rfx3_Rfx1_Rfx4	ENSMUST00000076991.7|4930453N24Rik|ENSMUSG00000059920.10|RIKEN cDNA 4930453N24 gene
mm39_v1_chr7_-_45527802_45527802	0.164651	Rfx3_Rfx1_Rfx4	ENSMUST00000211250.2|Grin2d|ENSMUSG00000002771.13|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm39_v1_chr5_-_120772300_120772359	0.1639	Rfx3_Rfx1_Rfx4	ENSMUST00000177908.2|Cfap73|ENSMUSG00000094282.2|cilia and flagella associated protein 73
mm39_v1_chr14_+_65903840_65903865	0.163499	Rfx3_Rfx1_Rfx4	ENSMUST00000022610.15|Scara5|ENSMUSG00000022032.15|scavenger receptor class A, member 5
mm39_v1_chr1_+_6800275_6800341	0.161388	Rfx3_Rfx1_Rfx4	ENSMUST00000043578.13|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000139756.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000131467.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000150761.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000151281.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chrX_+_7750483_7750552	0.160268	Rfx3_Rfx1_Rfx4	ENSMUST00000115663.10|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000096514.11|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2
mm39_v1_chr10_+_119828821_119828865	0.160108	Rfx3_Rfx1_Rfx4	ENSMUST00000105261.9|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1
mm39_v1_chr5_-_31448370_31448488	0.158884	Rfx3_Rfx1_Rfx4	ENSMUST00000041565.11|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172	ENSMUST00000201809.2|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172
mm39_v1_chr2_-_121101794_121101805	0.158651	Rfx3_Rfx1_Rfx4	ENSMUST00000131245.2|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1
mm39_v1_chr14_-_73286504_73286517	0.157688	Rfx3_Rfx1_Rfx4	ENSMUST00000044664.12|Cysltr2|ENSMUSG00000033470.13|cysteinyl leukotriene receptor 2
mm39_v1_chr11_+_87651359_87651413	0.157404	Rfx3_Rfx1_Rfx4	ENSMUST00000039627.12|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1	ENSMUST00000100644.10|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1
mm39_v1_chr2_+_90735077_90735091	0.155825	Rfx3_Rfx1_Rfx4	ENSMUST00000111464.8|Kbtbd4|ENSMUSG00000005505.13|kelch repeat and BTB (POZ) domain containing 4	ENSMUST00000090682.4|Kbtbd4|ENSMUSG00000005505.13|kelch repeat and BTB (POZ) domain containing 4
mm39_v1_chr17_+_28361237_28361295	0.154506	Rfx3_Rfx1_Rfx4	ENSMUST00000233905.2|Scube3|ENSMUSG00000038677.15|signal peptide, CUB domain, EGF-like 3
mm39_v1_chr7_-_80550968_80551017	0.154252	Rfx3_Rfx1_Rfx4	ENSMUST00000146402.2|Wdr73|ENSMUSG00000025722.17|WD repeat domain 73	ENSMUST00000026816.15|Wdr73|ENSMUSG00000025722.17|WD repeat domain 73
mm39_v1_chr6_+_83133381_83133434	0.152769	Rfx3_Rfx1_Rfx4	ENSMUST00000032106.6|1700003E16Rik|ENSMUSG00000030030.6|RIKEN cDNA 1700003E16 gene
mm39_v1_chr9_-_98917700_98917791	0.152448	Rfx3_Rfx1_Rfx4	ENSMUST00000076730.8|Gm1123|ENSMUSG00000044860.10|predicted gene 1123
mm39_v1_chr17_-_53770324_53770368	0.152278	Rfx3_Rfx1_Rfx4	ENSMUST00000024725.5|Efhb|ENSMUSG00000023931.6|EF hand domain family, member B
mm39_v1_chr17_+_34174797_34174900	0.149812	Rfx3_Rfx1_Rfx4	ENSMUST00000173196.3|Vps52|ENSMUSG00000024319.19|VPS52 GARP complex subunit
mm39_v1_chrX_+_152142571_152142609	0.148748	Rfx3_Rfx1_Rfx4	ENSMUST00000039545.5|Klf8|ENSMUSG00000041649.14|Kruppel-like factor 8
mm39_v1_chr17_+_28361115_28361167	0.148685	Rfx3_Rfx1_Rfx4	ENSMUST00000043503.11|Scube3|ENSMUSG00000038677.15|signal peptide, CUB domain, EGF-like 3
mm39_v1_chr9_+_121232480_121232594	0.14855	Rfx3_Rfx1_Rfx4	ENSMUST00000210351.2|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1
mm39_v1_chr14_-_73286535_73286563	0.147718	Rfx3_Rfx1_Rfx4	ENSMUST00000169168.3|Cysltr2|ENSMUSG00000033470.13|cysteinyl leukotriene receptor 2
mm39_v1_chr1_-_186947618_186947648	0.147343	Rfx3_Rfx1_Rfx4	ENSMUST00000110945.4|Spata17|ENSMUSG00000026611.18|spermatogenesis associated 17	ENSMUST00000183931.8|Spata17|ENSMUSG00000026611.18|spermatogenesis associated 17	ENSMUST00000027908.13|Spata17|ENSMUSG00000026611.18|spermatogenesis associated 17
mm39_v1_chr7_-_133203838_133203894	0.147195	Rfx3_Rfx1_Rfx4	ENSMUST00000033275.4|Tex36|ENSMUSG00000030976.4|testis expressed 36
mm39_v1_chr6_+_65019793_65019862	0.146678	Rfx3_Rfx1_Rfx4	ENSMUST00000204696.3|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm39_v1_chr7_-_12418918_12418930	0.144572	Rfx3_Rfx1_Rfx4	ENSMUST00000167771.2|Vmn2r55|ENSMUSG00000091045.10|vomeronasal 2, receptor 55	ENSMUST00000172743.9|Vmn2r55|ENSMUSG00000091045.10|vomeronasal 2, receptor 55	ENSMUST00000233763.2|Vmn2r55|ENSMUSG00000091045.10|vomeronasal 2, receptor 55	ENSMUST00000232880.2|Vmn2r55|ENSMUSG00000091045.10|vomeronasal 2, receptor 55
mm39_v1_chr2_-_21210151_21210184	0.144003	Rfx3_Rfx1_Rfx4	ENSMUST00000027992.3|Enkur|ENSMUSG00000026679.4|enkurin, TRPC channel interacting protein
mm39_v1_chr4_-_127224591_127224640	0.143417	Rfx3_Rfx1_Rfx4	ENSMUST00000046532.4|Gjb3|ENSMUSG00000042367.13|gap junction protein, beta 3
mm39_v1_chr4_-_43429077_43429134	0.143233	Rfx3_Rfx1_Rfx4	ENSMUST00000107929.10|Fam166b|ENSMUSG00000042788.13|family with sequence similarity 166, member B	ENSMUST00000107928.9|Fam166b|ENSMUSG00000042788.13|family with sequence similarity 166, member B	ENSMUST00000171134.9|Fam166b|ENSMUSG00000042788.13|family with sequence similarity 166, member B	ENSMUST00000052829.10|Fam166b|ENSMUSG00000042788.13|family with sequence similarity 166, member B
mm39_v1_chr14_+_55170152_55170152	0.143194	Rfx3_Rfx1_Rfx4	ENSMUST00000037863.6|Il25|ENSMUSG00000040770.6|interleukin 25
mm39_v1_chr12_+_8363425_8363464	0.142968	Rfx3_Rfx1_Rfx4	ENSMUST00000220199.2|Hs1bp3|ENSMUSG00000020605.10|HCLS1 binding protein 3	ENSMUST00000020927.10|Hs1bp3|ENSMUSG00000020605.10|HCLS1 binding protein 3
mm39_v1_chr11_-_69439934_69439934	0.142888	Rfx3_Rfx1_Rfx4	ENSMUST00000108659.2|Dnah2|ENSMUSG00000005237.15|dynein, axonemal, heavy chain 2
mm39_v1_chrX_+_7750558_7750617	0.142162	Rfx3_Rfx1_Rfx4	ENSMUST00000208640.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000207114.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000208633.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000208397.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000153620.3|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000123277.8|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2
mm39_v1_chr15_+_58761057_58761080	0.141888	Rfx3_Rfx1_Rfx4	ENSMUST00000036904.7|Rnf139|ENSMUSG00000037075.8|ring finger protein 139
mm39_v1_chr7_+_102452687_102452687	0.141327	Rfx3_Rfx1_Rfx4	ENSMUST00000061096.7|Olfr564|ENSMUSG00000048469.7|olfactory receptor 564
mm39_v1_chr1_-_186947651_186947675	0.14104	Rfx3_Rfx1_Rfx4	ENSMUST00000183819.8|Spata17|ENSMUSG00000026611.18|spermatogenesis associated 17
mm39_v1_chr3_+_95041399_95041399	0.140567	Rfx3_Rfx1_Rfx4	ENSMUST00000066386.6|Lysmd1|ENSMUSG00000053769.6|LysM, putative peptidoglycan-binding, domain containing 1
mm39_v1_chr9_+_44309727_44309771	0.140511	Rfx3_Rfx1_Rfx4	ENSMUST00000213268.2|Slc37a4|ENSMUSG00000032114.10|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm39_v1_chr8_+_3726503_3726547	0.139785	Rfx3_Rfx1_Rfx4	ENSMUST00000207787.2|Trappc5|ENSMUSG00000040236.5|trafficking protein particle complex 5
mm39_v1_chr7_+_3352019_3352080	0.138727	Rfx3_Rfx1_Rfx4	ENSMUST00000100301.11|Prkcg|ENSMUSG00000078816.11|protein kinase C, gamma
mm39_v1_chr5_+_27109679_27109709	0.138569	Rfx3_Rfx1_Rfx4	ENSMUST00000120555.8|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr15_-_83949528_83949572	0.137156	Rfx3_Rfx1_Rfx4	ENSMUST00000156187.8|Efcab6|ENSMUSG00000022441.18|EF-hand calcium binding domain 6
mm39_v1_chr10_+_116881246_116881268	0.134818	Rfx3_Rfx1_Rfx4	ENSMUST00000073834.5|Lrrc10|ENSMUSG00000060187.5|leucine rich repeat containing 10
mm39_v1_chr1_+_174251630_174251630	0.134169	Rfx3_Rfx1_Rfx4	ENSMUST00000192358.3|Olfr414|ENSMUSG00000051509.7|olfactory receptor 414
mm39_v1_chr7_+_44398008_44398058	0.132922	Rfx3_Rfx1_Rfx4	ENSMUST00000171821.8|Vrk3|ENSMUSG00000002205.17|vaccinia related kinase 3
mm39_v1_chr1_+_172309766_172309881	0.132252	Rfx3_Rfx1_Rfx4	ENSMUST00000135267.8|Igsf9|ENSMUSG00000037995.16|immunoglobulin superfamily, member 9	ENSMUST00000052629.13|Igsf9|ENSMUSG00000037995.16|immunoglobulin superfamily, member 9	ENSMUST00000111235.8|Igsf9|ENSMUSG00000037995.16|immunoglobulin superfamily, member 9
mm39_v1_chr4_+_110254907_110255005	0.13222	Rfx3_Rfx1_Rfx4	ENSMUST00000097920.9|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000080744.13|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4
mm39_v1_chr8_-_96033213_96033226	0.131904	Rfx3_Rfx1_Rfx4	ENSMUST00000119870.9|Cngb1|ENSMUSG00000031789.18|cyclic nucleotide gated channel beta 1	ENSMUST00000093268.5|Cngb1|ENSMUSG00000031789.18|cyclic nucleotide gated channel beta 1
mm39_v1_chr17_-_80885197_80885242	0.131828	Rfx3_Rfx1_Rfx4	ENSMUST00000234602.2|Cdkl4|ENSMUSG00000033966.9|cyclin-dependent kinase-like 4
mm39_v1_chr19_-_3332955_3333051	0.130756	Rfx3_Rfx1_Rfx4	ENSMUST00000119292.8|Ighmbp2|ENSMUSG00000024831.15|immunoglobulin mu binding protein 2	ENSMUST00000025751.11|Ighmbp2|ENSMUSG00000024831.15|immunoglobulin mu binding protein 2
mm39_v1_chr17_+_28396103_28396214	0.130474	Rfx3_Rfx1_Rfx4	ENSMUST00000073534.10|Zfp523|ENSMUSG00000024220.15|zinc finger protein 523
mm39_v1_chr3_-_30701942_30702025	0.129344	Rfx3_Rfx1_Rfx4	ENSMUST00000029252.8|Lrrc34|ENSMUSG00000027702.8|leucine rich repeat containing 34
mm39_v1_chr9_+_108660989_108661064	0.129216	Rfx3_Rfx1_Rfx4	ENSMUST00000192307.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000193560.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000194875.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2
mm39_v1_chr15_+_99122742_99122742	0.128684	Rfx3_Rfx1_Rfx4	ENSMUST00000041415.5|Kcnh3|ENSMUSG00000037579.8|potassium voltage-gated channel, subfamily H (eag-related), member 3
mm39_v1_chr1_+_21419819_21419865	0.127799	Rfx3_Rfx1_Rfx4	ENSMUST00000088407.4|Khdc1a|ENSMUSG00000067750.4|KH domain containing 1A
mm39_v1_chr17_-_57025022_57025053	0.127071	Rfx3_Rfx1_Rfx4	ENSMUST00000233400.2|Vmac|ENSMUSG00000054723.7|vimentin-type intermediate filament associated coiled-coil protein
mm39_v1_chr13_-_3995349_3995349	0.126405	Rfx3_Rfx1_Rfx4	ENSMUST00000058610.8|Ucn3|ENSMUSG00000044988.8|urocortin 3
mm39_v1_chr9_-_110305705_110305762	0.125761	Rfx3_Rfx1_Rfx4	ENSMUST00000198164.5|Klhl18|ENSMUSG00000054792.16|kelch-like 18	ENSMUST00000068025.13|Klhl18|ENSMUSG00000054792.16|kelch-like 18
mm39_v1_chr14_+_51181956_51181974	0.125445	Rfx3_Rfx1_Rfx4	ENSMUST00000178092.2|Pnp|ENSMUSG00000115338.3|purine-nucleoside phosphorylase	ENSMUST00000227052.2|Gm49342|ENSMUSG00000021871.20|predicted gene, 49342
mm39_v1_chr1_+_152642291_152642302	0.125311	Rfx3_Rfx1_Rfx4	ENSMUST00000077755.11|Arpc5|ENSMUSG00000008475.14|actin related protein 2/3 complex, subunit 5	ENSMUST00000097536.6|Arpc5|ENSMUSG00000008475.14|actin related protein 2/3 complex, subunit 5
mm39_v1_chr16_-_16647139_16647215	0.125009	Rfx3_Rfx1_Rfx4	ENSMUST00000023468.6|Spag6l|ENSMUSG00000022783.12|sperm associated antigen 6-like
mm39_v1_chr9_-_107158058_107158114	0.123834	Rfx3_Rfx1_Rfx4	ENSMUST00000134682.3|Mapkapk3|ENSMUSG00000032577.17|mitogen-activated protein kinase-activated protein kinase 3
mm39_v1_chr16_-_91723870_91723870	0.122903	Rfx3_Rfx1_Rfx4	ENSMUST00000159295.8|Atp5o|ENSMUSG00000116933.2|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
mm39_v1_chr9_+_104446682_104446825	0.121932	Rfx3_Rfx1_Rfx4	ENSMUST00000057742.15|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chr17_-_45785752_45785864	0.120146	Rfx3_Rfx1_Rfx4	ENSMUST00000233553.2|Spats1|ENSMUSG00000023935.11|spermatogenesis associated, serine-rich 1	ENSMUST00000233769.2|Spats1|ENSMUSG00000023935.11|spermatogenesis associated, serine-rich 1	ENSMUST00000024731.9|Spats1|ENSMUSG00000023935.11|spermatogenesis associated, serine-rich 1
mm39_v1_chr11_+_70453806_70453896	0.119361	Rfx3_Rfx1_Rfx4	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr14_+_30673435_30673469	0.119277	Rfx3_Rfx1_Rfx4	ENSMUST00000226833.2|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4
mm39_v1_chr5_+_136936984_136937029	0.118308	Rfx3_Rfx1_Rfx4	ENSMUST00000200157.5|Ift22|ENSMUSG00000007987.13|intraflagellar transport 22
mm39_v1_chr8_+_57004125_57004197	0.111982	Rfx3_Rfx1_Rfx4	ENSMUST00000110322.9|Fbxo8|ENSMUSG00000038206.14|F-box protein 8	ENSMUST00000040218.13|Fbxo8|ENSMUSG00000038206.14|F-box protein 8	ENSMUST00000210863.2|Fbxo8|ENSMUSG00000038206.14|F-box protein 8
mm39_v1_chr3_-_87655926_87655937	0.111145	Rfx3_Rfx1_Rfx4	ENSMUST00000023846.11|Lrrc71|ENSMUSG00000023084.12|leucine rich repeat containing 71
mm39_v1_chr7_-_121580930_121580942	0.109755	Rfx3_Rfx1_Rfx4	ENSMUST00000205438.2|Cog7|ENSMUSG00000034951.11|component of oligomeric golgi complex 7	ENSMUST00000057576.8|Cog7|ENSMUSG00000034951.11|component of oligomeric golgi complex 7
mm39_v1_chr10_-_56104732_56104791	0.109254	Rfx3_Rfx1_Rfx4	ENSMUST00000099739.5|Tbc1d32|ENSMUSG00000038122.10|TBC1 domain family, member 32
mm39_v1_chr9_+_53316572_53316623	0.108661	Rfx3_Rfx1_Rfx4	ENSMUST00000005262.2|4930550C14Rik|ENSMUSG00000005131.5|RIKEN cDNA 4930550C14 gene	ENSMUST00000217318.2|4930550C14Rik|ENSMUSG00000005131.5|RIKEN cDNA 4930550C14 gene
mm39_v1_chr9_+_104446957_104446991	0.107923	Rfx3_Rfx1_Rfx4	ENSMUST00000077190.7|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chr7_+_57069417_57069440	0.107309	Rfx3_Rfx1_Rfx4	ENSMUST00000085240.11|Gabrb3|ENSMUSG00000033676.14|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm39_v1_chr2_+_72128239_72128257	0.106345	Rfx3_Rfx1_Rfx4	ENSMUST00000144111.2|Map3k20|ENSMUSG00000004085.15|mitogen-activated protein kinase kinase kinase 20
mm39_v1_chr9_-_109946398_109946414	0.105675	Rfx3_Rfx1_Rfx4	ENSMUST00000200066.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm39_v1_chr19_+_6919691_6919951	0.105305	Rfx3_Rfx1_Rfx4	ENSMUST00000113426.8|Bad|ENSMUSG00000024959.15|BCL2-associated agonist of cell death	ENSMUST00000238184.2|Bad|ENSMUSG00000024959.15|BCL2-associated agonist of cell death	ENSMUST00000113423.10|Bad|ENSMUSG00000024959.15|BCL2-associated agonist of cell death	ENSMUST00000237334.2|Bad|ENSMUSG00000024959.15|BCL2-associated agonist of cell death	ENSMUST00000235240.2|Bad|ENSMUSG00000024959.15|BCL2-associated agonist of cell death
mm39_v1_chr1_+_152626273_152626315	0.104821	Rfx3_Rfx1_Rfx4	ENSMUST00000068875.5|Apobec4|ENSMUSG00000055547.5|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
mm39_v1_chr7_+_16716989_16717075	0.10477	Rfx3_Rfx1_Rfx4	ENSMUST00000206129.3|Gm42372|ENSMUSG00000108348.3|predicted gene, 42372
mm39_v1_chr13_+_59733073_59733139	0.104703	Rfx3_Rfx1_Rfx4	ENSMUST00000168367.8|Naa35|ENSMUSG00000021555.16|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	ENSMUST00000022038.15|Naa35|ENSMUSG00000021555.16|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm39_v1_chr16_+_13572409_13572500	0.103707	Rfx3_Rfx1_Rfx4	ENSMUST00000239037.2|A930007A09Rik|ENSMUSG00000118559.3|RIKEN cDNA A930007A09 gene
mm39_v1_chr2_+_118493713_118493809	0.103628	Rfx3_Rfx1_Rfx4	ENSMUST00000099557.10|Pak6|ENSMUSG00000074923.11|p21 (RAC1) activated kinase 6
mm39_v1_chr4_-_129494435_129494446	0.103036	Rfx3_Rfx1_Rfx4	ENSMUST00000102593.11|Eif3i|ENSMUSG00000028798.17|eukaryotic translation initiation factor 3, subunit I
mm39_v1_chr2_+_152269532_152269620	0.102907	Rfx3_Rfx1_Rfx4	ENSMUST00000128737.2|6820408C15Rik|ENSMUSG00000032680.12|RIKEN cDNA 6820408C15 gene
mm39_v1_chr5_-_121665249_121665321	0.102788	Rfx3_Rfx1_Rfx4	ENSMUST00000152270.8|Mapkapk5|ENSMUSG00000029454.16|MAP kinase-activated protein kinase 5
mm39_v1_chr1_-_155293075_155293104	0.102647	Rfx3_Rfx1_Rfx4	ENSMUST00000027741.12|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1
mm39_v1_chr3_+_105866685_105866744	0.101835	Rfx3_Rfx1_Rfx4	ENSMUST00000010278.12|Wdr77|ENSMUSG00000000561.15|WD repeat domain 77
mm39_v1_chr9_-_122779986_122780077	0.101547	Rfx3_Rfx1_Rfx4	ENSMUST00000118422.2|1110059G10Rik|ENSMUSG00000032551.8|RIKEN cDNA 1110059G10 gene	ENSMUST00000035154.4|1110059G10Rik|ENSMUSG00000032551.8|RIKEN cDNA 1110059G10 gene
mm39_v1_chr7_+_44398064_44398076	0.101015	Rfx3_Rfx1_Rfx4	ENSMUST00000165957.8|Vrk3|ENSMUSG00000002205.17|vaccinia related kinase 3	ENSMUST00000144515.9|Vrk3|ENSMUSG00000002205.17|vaccinia related kinase 3
mm39_v1_chr17_+_15163446_15163463	0.0972903	Rfx3_Rfx1_Rfx4	ENSMUST00000052691.9|1600012H06Rik|ENSMUSG00000050088.10|RIKEN cDNA 1600012H06 gene
mm39_v1_chr19_-_4175837_4175863	0.0966171	Rfx3_Rfx1_Rfx4	ENSMUST00000121402.2|Aip|ENSMUSG00000024847.16|aryl-hydrocarbon receptor-interacting protein	ENSMUST00000117831.8|Aip|ENSMUSG00000024847.16|aryl-hydrocarbon receptor-interacting protein
mm39_v1_chr14_-_78112327_78112381	0.0953427	Rfx3_Rfx1_Rfx4	ENSMUST00000226459.2|Dnajc15|ENSMUSG00000022013.5|DnaJ heat shock protein family (Hsp40) member C15
mm39_v1_chr11_+_120358461_120358545	0.0941742	Rfx3_Rfx1_Rfx4	ENSMUST00000140862.7|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate	ENSMUST00000106205.9|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate	ENSMUST00000106203.9|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate
mm39_v1_chr11_-_101490011_101490082	0.0923655	Rfx3_Rfx1_Rfx4	ENSMUST00000209862.2|Gm11634|ENSMUSG00000085486.3|predicted gene 11634	ENSMUST00000154147.2|Gm11634|ENSMUSG00000085486.3|predicted gene 11634
mm39_v1_chr19_-_10533562_10533640	0.0913095	Rfx3_Rfx1_Rfx4	ENSMUST00000025569.9|Tmem216|ENSMUSG00000024667.13|transmembrane protein 216
mm39_v1_chr13_+_21295653_21295723	0.0907073	Rfx3_Rfx1_Rfx4	ENSMUST00000213326.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215941.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215207.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000213922.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1
mm39_v1_chr2_+_153538572_153538572	0.0906428	Rfx3_Rfx1_Rfx4	ENSMUST00000119996.3|Dnmt3c|ENSMUSG00000082079.3|DNA methyltransferase 3C
mm39_v1_chr14_+_30673409_30673426	0.0896518	Rfx3_Rfx1_Rfx4	ENSMUST00000050171.10|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4
mm39_v1_chr11_-_34158085_34158092	0.0865969	Rfx3_Rfx1_Rfx4	ENSMUST00000060271.3|Foxi1|ENSMUSG00000047861.3|forkhead box I1
mm39_v1_chr5_+_21629932_21630031	0.086532	Rfx3_Rfx1_Rfx4	ENSMUST00000056045.5|Fam185a|ENSMUSG00000047221.6|family with sequence similarity 185, member A
mm39_v1_chr3_-_75359125_75359125	0.0858638	Rfx3_Rfx1_Rfx4	ENSMUST00000204341.3|Wdr49|ENSMUSG00000104301.4|WD repeat domain 49
mm39_v1_chr1_+_190769010_190769021	0.0837937	Rfx3_Rfx1_Rfx4	ENSMUST00000077889.8|Spata45|ENSMUSG00000057072.12|spermatogenesis associated 45
mm39_v1_chr4_+_133829891_133829896	0.082065	Rfx3_Rfx1_Rfx4	ENSMUST00000074690.11|Ubxn11|ENSMUSG00000012126.17|UBX domain protein 11
mm39_v1_chr10_-_80578057_80578113	0.0819237	Rfx3_Rfx1_Rfx4	ENSMUST00000020420.9|Ap3d1|ENSMUSG00000020198.9|adaptor-related protein complex 3, delta 1 subunit
mm39_v1_chr14_+_65903878_65903892	0.0813398	Rfx3_Rfx1_Rfx4	ENSMUST00000069226.7|Scara5|ENSMUSG00000022032.15|scavenger receptor class A, member 5
mm39_v1_chr11_-_90528888_90528926	0.0809193	Rfx3_Rfx1_Rfx4	ENSMUST00000020858.14|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4	ENSMUST00000107875.8|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4	ENSMUST00000107872.8|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4	ENSMUST00000143203.8|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4
mm39_v1_chr8_-_46428277_46428316	0.0805519	Rfx3_Rfx1_Rfx4	ENSMUST00000095323.8|1700029J07Rik|ENSMUSG00000071103.11|RIKEN cDNA 1700029J07 gene	ENSMUST00000098786.3|1700029J07Rik|ENSMUSG00000071103.11|RIKEN cDNA 1700029J07 gene
mm39_v1_chrX_-_156351979_156351987	0.0797583	Rfx3_Rfx1_Rfx4	ENSMUST00000065806.5|Yy2|ENSMUSG00000091736.4|Yy2 transcription factor
mm39_v1_chr11_-_77616103_77616120	0.079635	Rfx3_Rfx1_Rfx4	ENSMUST00000078623.5|Cryba1|ENSMUSG00000000724.11|crystallin, beta A1
mm39_v1_chr15_+_36179676_36179849	0.0775608	Rfx3_Rfx1_Rfx4	ENSMUST00000171205.3|Spag1|ENSMUSG00000037617.13|sperm associated antigen 1
mm39_v1_chr4_-_154127119_154127171	0.0762599	Rfx3_Rfx1_Rfx4	ENSMUST00000047207.7|Ccdc27|ENSMUSG00000039492.8|coiled-coil domain containing 27
mm39_v1_chr2_+_121188195_121188388	0.0759321	Rfx3_Rfx1_Rfx4	ENSMUST00000125812.8|Ckmt1|ENSMUSG00000000308.15|creatine kinase, mitochondrial 1, ubiquitous	ENSMUST00000078222.9|Ckmt1|ENSMUSG00000000308.15|creatine kinase, mitochondrial 1, ubiquitous	ENSMUST00000125221.3|Ckmt1|ENSMUSG00000000308.15|creatine kinase, mitochondrial 1, ubiquitous	ENSMUST00000150271.8|Ckmt1|ENSMUSG00000000308.15|creatine kinase, mitochondrial 1, ubiquitous
mm39_v1_chr8_+_123148759_123148759	0.0758327	Rfx3_Rfx1_Rfx4	ENSMUST00000050963.4|Il17c|ENSMUSG00000046108.4|interleukin 17C
mm39_v1_chr11_+_101315893_101315940	0.0754863	Rfx3_Rfx1_Rfx4	ENSMUST00000040561.6|Rundc1|ENSMUSG00000035007.6|RUN domain containing 1
mm39_v1_chr15_-_64886753_64886753	0.074897	Rfx3_Rfx1_Rfx4	ENSMUST00000110100.3|Gm21961|ENSMUSG00000079024.3|predicted gene, 21961
mm39_v1_chr3_+_40594899_40594939	0.0712736	Rfx3_Rfx1_Rfx4	ENSMUST00000091186.7|Intu|ENSMUSG00000060798.8|inturned planar cell polarity protein
mm39_v1_chr7_+_12712139_12712165	0.0671863	Rfx3_Rfx1_Rfx4	ENSMUST00000108536.3|Zfp446|ENSMUSG00000033961.17|zinc finger protein 446
mm39_v1_chr9_-_40915895_40915929	0.0657819	Rfx3_Rfx1_Rfx4	ENSMUST00000180384.3|Crtam|ENSMUSG00000032021.15|cytotoxic and regulatory T cell molecule
mm39_v1_chr14_+_45225641_45225672	0.0636635	Rfx3_Rfx1_Rfx4	ENSMUST00000046891.6|Ptger2|ENSMUSG00000037759.7|prostaglandin E receptor 2 (subtype EP2)
mm39_v1_chr9_-_15834052_15834052	0.0631657	Rfx3_Rfx1_Rfx4	ENSMUST00000217187.2|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr4_-_126647156_126647239	0.0631512	Rfx3_Rfx1_Rfx4	ENSMUST00000030637.14|Ncdn|ENSMUSG00000028833.14|neurochondrin	ENSMUST00000106116.2|Ncdn|ENSMUSG00000028833.14|neurochondrin
mm39_v1_chr17_-_84773544_84773612	0.0621595	Rfx3_Rfx1_Rfx4	ENSMUST00000047524.10|Thada|ENSMUSG00000024251.11|thyroid adenoma associated
mm39_v1_chr5_-_122402451_122402525	0.0618061	Rfx3_Rfx1_Rfx4	ENSMUST00000111738.8|Tctn1|ENSMUSG00000038593.19|tectonic family member 1
mm39_v1_chr16_+_44215136_44215193	0.0611242	Rfx3_Rfx1_Rfx4	ENSMUST00000099742.9|Cfap44|ENSMUSG00000071550.15|cilia and flagella associated protein 44
mm39_v1_chr5_+_34140777_34140873	0.0609318	Rfx3_Rfx1_Rfx4	ENSMUST00000094869.12|Gm1673|ENSMUSG00000070858.13|predicted gene 1673	ENSMUST00000114383.8|Gm1673|ENSMUSG00000070858.13|predicted gene 1673
mm39_v1_chr19_+_43678109_43678133	0.059855	Rfx3_Rfx1_Rfx4	ENSMUST00000081079.6|Entpd7|ENSMUSG00000025192.14|ectonucleoside triphosphate diphosphohydrolase 7
mm39_v1_chr2_+_144112798_144112869	0.0580398	Rfx3_Rfx1_Rfx4	ENSMUST00000028910.9|Mgme1|ENSMUSG00000027424.12|mitochondrial genome maintenance exonuclease 1	ENSMUST00000110027.2|Mgme1|ENSMUSG00000027424.12|mitochondrial genome maintenance exonuclease 1
mm39_v1_chr4_-_129494378_129494392	0.0577407	Rfx3_Rfx1_Rfx4	ENSMUST00000135055.8|Eif3i|ENSMUSG00000028798.17|eukaryotic translation initiation factor 3, subunit I
mm39_v1_chr11_-_3143387_3143463	0.0569603	Rfx3_Rfx1_Rfx4	ENSMUST00000081318.13|Sfi1|ENSMUSG00000023764.19|Sfi1 homolog, spindle assembly associated (yeast)	ENSMUST00000142315.8|Sfi1|ENSMUSG00000023764.19|Sfi1 homolog, spindle assembly associated (yeast)	ENSMUST00000118627.2|Sfi1|ENSMUSG00000023764.19|Sfi1 homolog, spindle assembly associated (yeast)	ENSMUST00000066391.14|Sfi1|ENSMUSG00000023764.19|Sfi1 homolog, spindle assembly associated (yeast)
mm39_v1_chr1_-_92830604_92830643	0.056069	Rfx3_Rfx1_Rfx4	ENSMUST00000160548.8|Ankmy1|ENSMUSG00000034212.15|ankyrin repeat and MYND domain containing 1	ENSMUST00000112998.2|Ankmy1|ENSMUSG00000034212.15|ankyrin repeat and MYND domain containing 1
mm39_v1_chr16_+_4653271_4653286	0.0558786	Rfx3_Rfx1_Rfx4	ENSMUST00000100211.11|4930562C15Rik|ENSMUSG00000022518.17|RIKEN cDNA 4930562C15 gene
mm39_v1_chr19_-_8906686_8906747	0.0557046	Rfx3_Rfx1_Rfx4	ENSMUST00000096242.5|Rom1|ENSMUSG00000071648.5|rod outer segment membrane protein 1
mm39_v1_chr12_+_104998895_104998964	0.0554117	Rfx3_Rfx1_Rfx4	ENSMUST00000223244.2|Glrx5|ENSMUSG00000021102.5|glutaredoxin 5	ENSMUST00000021522.5|Glrx5|ENSMUSG00000021102.5|glutaredoxin 5
mm39_v1_chr8_-_106732607_106732607	0.0552119	Rfx3_Rfx1_Rfx4	ENSMUST00000227778.2|Dpep2nb|ENSMUSG00000115768.2|Dpep2 neighbor
mm39_v1_chr6_-_100648086_100648140	0.0547336	Rfx3_Rfx1_Rfx4	ENSMUST00000089245.7|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)	ENSMUST00000113312.9|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)	ENSMUST00000170667.8|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)
mm39_v1_chr2_+_166634445_166634456	0.0543393	Rfx3_Rfx1_Rfx4	ENSMUST00000065753.2|Trp53rkb|ENSMUSG00000042854.10|transformation related protein 53 regulating kinase B
mm39_v1_chr9_-_40915858_40915882	0.0536739	Rfx3_Rfx1_Rfx4	ENSMUST00000188848.8|Crtam|ENSMUSG00000032021.15|cytotoxic and regulatory T cell molecule	ENSMUST00000034519.13|Crtam|ENSMUSG00000032021.15|cytotoxic and regulatory T cell molecule
mm39_v1_chr4_+_10874498_10874526	0.0527703	Rfx3_Rfx1_Rfx4	ENSMUST00000080517.14|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chr7_+_18883647_18883769	0.0527054	Rfx3_Rfx1_Rfx4	ENSMUST00000049294.4|Snrpd2|ENSMUSG00000040824.4|small nuclear ribonucleoprotein D2
mm39_v1_chr2_-_38177359_38177406	0.0524559	Rfx3_Rfx1_Rfx4	ENSMUST00000102787.10|Dennd1a|ENSMUSG00000035392.18|DENN/MADD domain containing 1A
mm39_v1_chr18_-_39652468_39652478	0.0519443	Rfx3_Rfx1_Rfx4	ENSMUST00000237944.2|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr6_-_122317457_122317471	0.0518827	Rfx3_Rfx1_Rfx4	ENSMUST00000160843.8|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr1_-_4479445_4479513	0.0515716	Rfx3_Rfx1_Rfx4	ENSMUST00000208660.2|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr2_+_125994050_125994066	0.0507742	Rfx3_Rfx1_Rfx4	ENSMUST00000170908.8|Dtwd1|ENSMUSG00000023330.13|DTW domain containing 1
mm39_v1_chr17_+_85397980_85398073	0.0505094	Rfx3_Rfx1_Rfx4	ENSMUST00000095188.7|Camkmt|ENSMUSG00000071037.7|calmodulin-lysine N-methyltransferase
mm39_v1_chr4_+_53631460_53631574	0.0497217	Rfx3_Rfx1_Rfx4	ENSMUST00000132151.8|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000159415.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000163067.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like
mm39_v1_chr10_-_103072141_103072189	0.0494078	Rfx3_Rfx1_Rfx4	ENSMUST00000123364.2|Lrriq1|ENSMUSG00000019892.14|leucine-rich repeats and IQ motif containing 1	ENSMUST00000166240.8|Lrriq1|ENSMUSG00000019892.14|leucine-rich repeats and IQ motif containing 1	ENSMUST00000020043.12|Lrriq1|ENSMUSG00000019892.14|leucine-rich repeats and IQ motif containing 1
mm39_v1_chrX_-_121307036_121307145	0.0489416	Rfx3_Rfx1_Rfx4	ENSMUST00000079490.6|Nap1l3|ENSMUSG00000055733.7|nucleosome assembly protein 1-like 3
mm39_v1_chr5_+_30486375_30486445	0.047571	Rfx3_Rfx1_Rfx4	ENSMUST00000101448.5|Drc1|ENSMUSG00000073102.8|dynein regulatory complex subunit 1
mm39_v1_chr4_-_94940425_94940459	0.047476	Rfx3_Rfx1_Rfx4	ENSMUST00000107094.2|Jun|ENSMUSG00000052684.5|jun proto-oncogene
mm39_v1_chr18_+_53378806_53378857	0.047166	Rfx3_Rfx1_Rfx4	ENSMUST00000025417.9|Snx24|ENSMUSG00000024535.17|sorting nexing 24
mm39_v1_chr8_-_72019245_72019271	0.0459937	Rfx3_Rfx1_Rfx4	ENSMUST00000163659.3|Nxnl1|ENSMUSG00000034829.9|nucleoredoxin-like 1	ENSMUST00000048243.7|Nxnl1|ENSMUSG00000034829.9|nucleoredoxin-like 1
mm39_v1_chr17_+_35235552_35235614	0.0435856	Rfx3_Rfx1_Rfx4	ENSMUST00000007245.8|Vwa7|ENSMUSG00000007030.9|von Willebrand factor A domain containing 7	ENSMUST00000172499.2|Vwa7|ENSMUSG00000007030.9|von Willebrand factor A domain containing 7
mm39_v1_chr1_-_162913210_162913242	0.0431499	Rfx3_Rfx1_Rfx4	ENSMUST00000096608.5|Mroh9|ENSMUSG00000071890.5|maestro heat-like repeat family member 9
mm39_v1_chr8_-_107064615_107064640	0.042765	Rfx3_Rfx1_Rfx4	ENSMUST00000067512.8|Smpd3|ENSMUSG00000031906.10|sphingomyelin phosphodiesterase 3, neutral
mm39_v1_chr19_-_59932079_59932110	0.0423198	Rfx3_Rfx1_Rfx4	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr4_-_43836517_43836517	0.0412743	Rfx3_Rfx1_Rfx4	ENSMUST00000215442.2|Olfr157|ENSMUSG00000111611.2|olfactory receptor 157
mm39_v1_chr9_-_108888284_108888319	0.0412024	Rfx3_Rfx1_Rfx4	ENSMUST00000112053.2|Trex1|ENSMUSG00000049734.10|three prime repair exonuclease 1
mm39_v1_chr11_+_69920849_69920924	0.0411115	Rfx3_Rfx1_Rfx4	ENSMUST00000143920.4|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4
mm39_v1_chr12_-_118162652_118162778	0.0401255	Rfx3_Rfx1_Rfx4	ENSMUST00000084806.7|Dnah11|ENSMUSG00000018581.16|dynein, axonemal, heavy chain 11
mm39_v1_chr11_-_115212851_115212890	0.0386465	Rfx3_Rfx1_Rfx4	ENSMUST00000103037.5|Ush1g|ENSMUSG00000045288.11|USH1 protein network component sans
mm39_v1_chr14_+_30673334_30673373	0.0371483	Rfx3_Rfx1_Rfx4	ENSMUST00000226551.2|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4	ENSMUST00000228328.2|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4
mm39_v1_chr13_+_59733163_59733255	0.0366992	Rfx3_Rfx1_Rfx4	ENSMUST00000166923.9|Naa35|ENSMUSG00000021555.16|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm39_v1_chr11_+_108477903_108477936	0.0361297	Rfx3_Rfx1_Rfx4	ENSMUST00000146912.9|Cep112|ENSMUSG00000020728.18|centrosomal protein 112
mm39_v1_chr19_-_4189603_4189611	0.0340764	Rfx3_Rfx1_Rfx4	ENSMUST00000025761.8|Cabp4|ENSMUSG00000024842.9|calcium binding protein 4
mm39_v1_chr11_+_98754434_98754472	0.0339481	Rfx3_Rfx1_Rfx4	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr19_+_4189786_4189786	0.0331657	Rfx3_Rfx1_Rfx4	ENSMUST00000096338.5|Gpr152|ENSMUSG00000044724.10|G protein-coupled receptor 152
mm39_v1_chr10_-_62561865_62561907	0.0321061	Rfx3_Rfx1_Rfx4	ENSMUST00000133371.8|Stox1|ENSMUSG00000036923.13|storkhead box 1
mm39_v1_chr19_+_6952319_6952371	0.029029	Rfx3_Rfx1_Rfx4	ENSMUST00000070850.8|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr5_+_4073343_4073415	0.028862	Rfx3_Rfx1_Rfx4	ENSMUST00000238634.2|Akap9|ENSMUSG00000040407.19|A kinase (PRKA) anchor protein (yotiao) 9
mm39_v1_chr3_+_106592259_106592337	0.0284967	Rfx3_Rfx1_Rfx4	ENSMUST00000098751.10|Lrif1|ENSMUSG00000056260.16|ligand dependent nuclear receptor interacting factor 1
mm39_v1_chr15_+_78926085_78926085	0.0270661	Rfx3_Rfx1_Rfx4	ENSMUST00000058004.4|Galr3|ENSMUSG00000114755.2|galanin receptor 3
mm39_v1_chr9_+_77959206_77959231	0.0265166	Rfx3_Rfx1_Rfx4	ENSMUST00000024104.9|Gcm1|ENSMUSG00000023333.9|glial cells missing homolog 1
mm39_v1_chr11_+_69231589_69231665	0.0238277	Rfx3_Rfx1_Rfx4	ENSMUST00000218008.2|Rnf227|ENSMUSG00000043419.12|ring finger protein 227	ENSMUST00000151617.3|Rnf227|ENSMUSG00000043419.12|ring finger protein 227
mm39_v1_chr2_+_84880776_84880847	0.0219053	Rfx3_Rfx1_Rfx4	ENSMUST00000111605.9|Tnks1bp1|ENSMUSG00000033955.14|tankyrase 1 binding protein 1
mm39_v1_chr10_-_41894360_41894432	0.0209972	Rfx3_Rfx1_Rfx4	ENSMUST00000162405.8|Armc2|ENSMUSG00000071324.12|armadillo repeat containing 2	ENSMUST00000095729.11|Armc2|ENSMUSG00000071324.12|armadillo repeat containing 2	ENSMUST00000161081.2|Armc2|ENSMUSG00000071324.12|armadillo repeat containing 2	ENSMUST00000160262.9|Armc2|ENSMUSG00000071324.12|armadillo repeat containing 2
mm39_v1_chr9_+_108367801_108367963	0.0198857	Rfx3_Rfx1_Rfx4	ENSMUST00000006854.13|Usp19|ENSMUSG00000006676.17|ubiquitin specific peptidase 19
mm39_v1_chr6_-_102441628_102441628	0.0177083	Rfx3_Rfx1_Rfx4	ENSMUST00000032159.7|Cntn3|ENSMUSG00000030075.11|contactin 3
mm39_v1_chr4_+_152181155_152181176	0.0161673	Rfx3_Rfx1_Rfx4	ENSMUST00000105661.10|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	ENSMUST00000084115.4|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm39_v1_chr1_+_21021889_21021959	0.0156813	Rfx3_Rfx1_Rfx4	ENSMUST00000038447.6|Efhc1|ENSMUSG00000041809.6|EF-hand domain (C-terminal) containing 1
mm39_v1_chr16_+_14398085_14398085	0.0155392	Rfx3_Rfx1_Rfx4	ENSMUST00000147024.8|A630010A05Rik|ENSMUSG00000075395.12|RIKEN cDNA A630010A05 gene
mm39_v1_chr3_+_68375495_68375542	0.0154056	Rfx3_Rfx1_Rfx4	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr9_-_44473146_44473174	0.0151114	Rfx3_Rfx1_Rfx4	ENSMUST00000215293.2|Cxcr5|ENSMUSG00000047880.16|chemokine (C-X-C motif) receptor 5
mm39_v1_chr13_-_30170031_30170048	0.0145804	Rfx3_Rfx1_Rfx4	ENSMUST00000102948.11|E2f3|ENSMUSG00000016477.19|E2F transcription factor 3
mm39_v1_chrX_+_55833061_55833085	0.0131391	Rfx3_Rfx1_Rfx4	ENSMUST00000151033.2|Fhl1|ENSMUSG00000023092.17|four and a half LIM domains 1
mm39_v1_chr18_-_12438695_12438854	0.0129363	Rfx3_Rfx1_Rfx4	ENSMUST00000122408.8|Ankrd29|ENSMUSG00000057766.15|ankyrin repeat domain 29	ENSMUST00000234183.2|Ankrd29|ENSMUSG00000057766.15|ankyrin repeat domain 29	ENSMUST00000142066.2|Ankrd29|ENSMUSG00000057766.15|ankyrin repeat domain 29	ENSMUST00000118525.9|Ankrd29|ENSMUSG00000057766.15|ankyrin repeat domain 29
mm39_v1_chr9_+_43983493_43983509	0.0110696	Rfx3_Rfx1_Rfx4	ENSMUST00000176671.2|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr3_-_84489783_84489841	0.00939366	Rfx3_Rfx1_Rfx4	ENSMUST00000107687.9|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1	ENSMUST00000098990.10|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1
mm39_v1_chr6_+_38410848_38410901	0.0069394	Rfx3_Rfx1_Rfx4	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr4_+_10874537_10874607	0.00457901	Rfx3_Rfx1_Rfx4	ENSMUST00000101504.3|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chr17_+_28396370_28396432	0.00442547	Rfx3_Rfx1_Rfx4	ENSMUST00000002318.8|Zfp523|ENSMUSG00000024220.15|zinc finger protein 523	ENSMUST00000233904.2|Zfp523|ENSMUSG00000024220.15|zinc finger protein 523
mm39_v1_chr4_+_151081538_151081554	0.00408494	Rfx3_Rfx1_Rfx4	ENSMUST00000030803.2|Uts2|ENSMUSG00000028963.2|urotensin 2
mm39_v1_chr3_+_108498595_108498727	0.0038618	Rfx3_Rfx1_Rfx4	ENSMUST00000051145.15|Wdr47|ENSMUSG00000040389.16|WD repeat domain 47
mm39_v1_chr5_-_41865477_41865513	3.52361e-05	Rfx3_Rfx1_Rfx4	ENSMUST00000031011.12|Rab28|ENSMUSG00000029128.13|RAB28, member RAS oncogene family	ENSMUST00000202913.2|Rab28|ENSMUSG00000029128.13|RAB28, member RAS oncogene family
