mm39_v1_chr9_+_59563872_59563942	5.31217	Pax4	ENSMUST00000215623.2|Pkm|ENSMUSG00000032294.18|pyruvate kinase, muscle	ENSMUST00000215660.2|Pkm|ENSMUSG00000032294.18|pyruvate kinase, muscle	ENSMUST00000217353.2|Pkm|ENSMUSG00000032294.18|pyruvate kinase, muscle
mm39_v1_chr9_+_59564482_59564547	5.14407	Pax4	ENSMUST00000216620.2|Pkm|ENSMUSG00000032294.18|pyruvate kinase, muscle	ENSMUST00000217038.2|Pkm|ENSMUSG00000032294.18|pyruvate kinase, muscle
mm39_v1_chr9_+_59563838_59563866	5.03257	Pax4	ENSMUST00000163694.4|Pkm|ENSMUSG00000032294.18|pyruvate kinase, muscle
mm39_v1_chr7_+_78563150_78563177	4.38644	Pax4	ENSMUST00000118867.8|Isg20|ENSMUSG00000039236.19|interferon-stimulated protein
mm39_v1_chr7_+_78563513_78563612	4.35085	Pax4	ENSMUST00000038142.15|Isg20|ENSMUSG00000039236.19|interferon-stimulated protein
mm39_v1_chr7_+_78563184_78563206	4.10962	Pax4	ENSMUST00000121645.8|Isg20|ENSMUSG00000039236.19|interferon-stimulated protein
mm39_v1_chr11_+_98798627_98798692	4.00372	Pax4	ENSMUST00000092706.13|Cdc6|ENSMUSG00000017499.16|cell division cycle 6
mm39_v1_chr17_+_35278011_35278113	3.90558	Pax4	ENSMUST00000007255.13|Ddah2|ENSMUSG00000007039.13|dimethylarginine dimethylaminohydrolase 2	ENSMUST00000174493.8|Ddah2|ENSMUSG00000007039.13|dimethylarginine dimethylaminohydrolase 2
mm39_v1_chr11_+_62465304_62465378	3.30222	Pax4	ENSMUST00000018651.14|Trpv2|ENSMUSG00000018507.17|transient receptor potential cation channel, subfamily V, member 2
mm39_v1_chr16_-_36486429_36486448	3.30058	Pax4	ENSMUST00000089620.11|Cd86|ENSMUSG00000022901.14|CD86 antigen
mm39_v1_chr7_+_24561616_24561638	2.63218	Pax4	ENSMUST00000170837.3|Gm9844|ENSMUSG00000091955.3|predicted pseudogene 9844
mm39_v1_chr13_-_55676334_55676378	2.56857	Pax4	ENSMUST00000047877.5|Dok3|ENSMUSG00000035711.6|docking protein 3
mm39_v1_chr5_+_66833434_66833600	2.21222	Pax4	ENSMUST00000031131.11|Uchl1|ENSMUSG00000029223.13|ubiquitin carboxy-terminal hydrolase L1
mm39_v1_chr11_+_106916430_106916507	2.07319	Pax4	ENSMUST00000140447.4|1810010H24Rik|ENSMUSG00000078607.7|RIKEN cDNA 1810010H24 gene
mm39_v1_chr9_+_32607301_32607417	2.05438	Pax4	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr5_+_135703426_135703447	2.00424	Pax4	ENSMUST00000153515.8|Por|ENSMUSG00000005514.15|P450 (cytochrome) oxidoreductase
mm39_v1_chr17_-_23864237_23864267	1.94443	Pax4	ENSMUST00000024696.9|Mmp25|ENSMUSG00000023903.9|matrix metallopeptidase 25
mm39_v1_chr2_-_125348305_125348328	1.86131	Pax4	ENSMUST00000028633.13|Fbn1|ENSMUSG00000027204.14|fibrillin 1
mm39_v1_chr4_-_87951565_87951610	1.84433	Pax4	ENSMUST00000078090.12|Mllt3|ENSMUSG00000028496.18|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
mm39_v1_chr15_+_78481247_78481352	1.83242	Pax4	ENSMUST00000043069.6|Cyth4|ENSMUSG00000018008.9|cytohesin 4	ENSMUST00000231180.2|Cyth4|ENSMUSG00000018008.9|cytohesin 4	ENSMUST00000229796.2|Cyth4|ENSMUSG00000018008.9|cytohesin 4	ENSMUST00000229295.2|Cyth4|ENSMUSG00000018008.9|cytohesin 4
mm39_v1_chr9_+_96141317_96141338	1.796	Pax4	ENSMUST00000165768.4|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr9_+_96141299_96141314	1.77085	Pax4	ENSMUST00000179065.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr4_-_58987094_58987119	1.63529	Pax4	ENSMUST00000030069.7|Ptgr1|ENSMUSG00000028378.7|prostaglandin reductase 1
mm39_v1_chr1_+_153628598_153628614	1.6125	Pax4	ENSMUST00000182538.3|Rnasel|ENSMUSG00000066800.12|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm39_v1_chr6_+_47854138_47854138	1.59778	Pax4	ENSMUST00000061890.8|Zfp282|ENSMUSG00000025821.10|zinc finger protein 282
mm39_v1_chr4_+_6365694_6365722	1.54303	Pax4	ENSMUST00000175769.8|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000140830.8|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000108374.8|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein
mm39_v1_chr19_-_4240984_4241028	1.50258	Pax4	ENSMUST00000045864.4|Tbc1d10c|ENSMUSG00000040247.7|TBC1 domain family, member 10c
mm39_v1_chr16_-_14109219_14109236	1.45706	Pax4	ENSMUST00000230397.2|Myh11|ENSMUSG00000018830.11|myosin, heavy polypeptide 11, smooth muscle	ENSMUST00000231567.2|Myh11|ENSMUSG00000018830.11|myosin, heavy polypeptide 11, smooth muscle	ENSMUST00000090287.5|Myh11|ENSMUSG00000018830.11|myosin, heavy polypeptide 11, smooth muscle
mm39_v1_chr19_+_53128861_53128880	1.39761	Pax4	ENSMUST00000111741.10|Add3|ENSMUSG00000025026.16|adducin 3 (gamma)
mm39_v1_chr9_-_58066484_58066523	1.34076	Pax4	ENSMUST00000041477.15|Islr|ENSMUSG00000037206.16|immunoglobulin superfamily containing leucine-rich repeat
mm39_v1_chr4_+_6365650_6365688	1.3049	Pax4	ENSMUST00000029912.11|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000103008.12|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein
mm39_v1_chr12_-_84265609_84265663	1.24483	Pax4	ENSMUST00000046266.13|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein	ENSMUST00000220974.2|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein
mm39_v1_chr2_+_22785534_22785581	1.20016	Pax4	ENSMUST00000053729.14|Pdss1|ENSMUSG00000026784.15|prenyl (solanesyl) diphosphate synthase, subunit 1
mm39_v1_chr1_-_79838897_79839020	1.17766	Pax4	ENSMUST00000190724.2|Serpine2|ENSMUSG00000026249.11|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm39_v1_chr7_+_43057611_43057634	1.17193	Pax4	ENSMUST00000005592.7|Siglecg|ENSMUSG00000030468.13|sialic acid binding Ig-like lectin G
mm39_v1_chr2_+_22785593_22785643	0.955478	Pax4	ENSMUST00000152170.8|Pdss1|ENSMUSG00000026784.15|prenyl (solanesyl) diphosphate synthase, subunit 1
mm39_v1_chr19_-_4241034_4241084	0.917896	Pax4	ENSMUST00000237495.2|Tbc1d10c|ENSMUSG00000040247.7|TBC1 domain family, member 10c
mm39_v1_chr8_-_83129134_83129230	0.869699	Pax4	ENSMUST00000209363.2|Il15|ENSMUSG00000031712.11|interleukin 15
mm39_v1_chr4_+_150366028_150366103	0.86798	Pax4	ENSMUST00000105682.9|Rere|ENSMUSG00000039852.18|arginine glutamic acid dipeptide (RE) repeats
mm39_v1_chr13_+_23922783_23922798	0.823766	Pax4	ENSMUST00000040914.3|H1f2|ENSMUSG00000036181.3|H1.2 linker histone, cluster member
mm39_v1_chr2_-_160155536_160155536	0.773218	Pax4	ENSMUST00000109475.3|Gm826|ENSMUSG00000074623.5|predicted gene 826
mm39_v1_chr4_+_124960465_124960509	0.758421	Pax4	ENSMUST00000052183.7|Snip1|ENSMUSG00000050213.7|Smad nuclear interacting protein 1
mm39_v1_chr3_+_95532282_95532332	0.742122	Pax4	ENSMUST00000058230.13|Ensa|ENSMUSG00000038619.13|endosulfine alpha	ENSMUST00000037983.6|Ensa|ENSMUSG00000038619.13|endosulfine alpha
mm39_v1_chr7_+_80764564_80764598	0.69039	Pax4	ENSMUST00000119083.2|Slc28a1|ENSMUSG00000025726.12|solute carrier family 28 (sodium-coupled nucleoside transporter), member 1
mm39_v1_chrX_+_72235828_72235828	0.689102	Pax4	ENSMUST00000101486.5|Xlr3b|ENSMUSG00000073125.11|X-linked lymphocyte-regulated 3B
mm39_v1_chr13_+_21901791_21901829	0.66389	Pax4	ENSMUST00000188775.2|H3c10|ENSMUSG00000101355.2|H3 clustered histone 10
mm39_v1_chr11_+_87017878_87017917	0.663748	Pax4	ENSMUST00000041282.13|Trim37|ENSMUSG00000018548.16|tripartite motif-containing 37
mm39_v1_chr11_-_18968955_18968973	0.663333	Pax4	ENSMUST00000068264.14|Meis1|ENSMUSG00000020160.19|Meis homeobox 1	ENSMUST00000185131.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr19_+_4022322_4022346	0.626971	Pax4	ENSMUST00000143380.3|Aldh3b2|ENSMUSG00000075296.6|aldehyde dehydrogenase 3 family, member B2
mm39_v1_chr2_-_114485421_114485450	0.617324	Pax4	ENSMUST00000028640.14|Dph6|ENSMUSG00000057147.14|diphthamine biosynthesis 6	ENSMUST00000102542.10|Dph6|ENSMUSG00000057147.14|diphthamine biosynthesis 6
mm39_v1_chr7_+_80764547_80764555	0.607671	Pax4	ENSMUST00000026820.11|Slc28a1|ENSMUSG00000025726.12|solute carrier family 28 (sodium-coupled nucleoside transporter), member 1
mm39_v1_chr4_+_147216495_147216495	0.539972	Pax4	ENSMUST00000084149.10|Zfp991|ENSMUSG00000067916.10|zinc finger protein 991
mm39_v1_chr8_-_83128992_83129007	0.534114	Pax4	ENSMUST00000210094.2|Il15|ENSMUSG00000031712.11|interleukin 15
mm39_v1_chr10_+_119655294_119655430	0.531094	Pax4	ENSMUST00000105262.9|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000147454.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000138410.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144825.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000148954.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144959.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1
mm39_v1_chr2_+_181322077_181322126	0.522342	Pax4	ENSMUST00000103042.10|Tcea2|ENSMUSG00000059540.16|transcription elongation factor A (SII), 2
mm39_v1_chr6_+_136495784_136495808	0.493725	Pax4	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr13_-_101904662_101904725	0.433382	Pax4	ENSMUST00000055518.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr10_+_129153986_129153986	0.428429	Pax4	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chr2_-_114485342_114485396	0.426903	Pax4	ENSMUST00000055144.8|Dph6|ENSMUSG00000057147.14|diphthamine biosynthesis 6
mm39_v1_chr15_-_59245998_59246049	0.421846	Pax4	ENSMUST00000022976.6|Washc5|ENSMUSG00000022350.8|WASH complex subunit 5
mm39_v1_chr10_+_127257077_127257104	0.366307	Pax4	ENSMUST00000168780.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr2_-_131170902_131170909	0.354661	Pax4	ENSMUST00000110194.8|Rnf24|ENSMUSG00000048911.16|ring finger protein 24
mm39_v1_chr9_+_14411907_14411914	0.341265	Pax4	ENSMUST00000004200.9|Cwc15|ENSMUSG00000004096.10|CWC15 spliceosome-associated protein
mm39_v1_chr5_-_121641461_121641503	0.325734	Pax4	ENSMUST00000079368.5|Adam1b|ENSMUSG00000062438.5|a disintegrin and metallopeptidase domain 1b
mm39_v1_chr12_+_71095112_71095131	0.318606	Pax4	ENSMUST00000135709.2|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr10_-_129509659_129509734	0.316767	Pax4	ENSMUST00000213294.2|Olfr801|ENSMUSG00000058513.8|olfactory receptor 801	ENSMUST00000216067.3|Olfr801|ENSMUSG00000058513.8|olfactory receptor 801	ENSMUST00000203424.2|Olfr801|ENSMUSG00000058513.8|olfactory receptor 801
mm39_v1_chr9_+_88209250_88209250	0.31015	Pax4	ENSMUST00000034992.8|Nt5e|ENSMUSG00000032420.9|5' nucleotidase, ecto
mm39_v1_chr9_+_20209828_20209891	0.293141	Pax4	ENSMUST00000215540.2|Olfr873|ENSMUSG00000049028.9|olfactory receptor 873	ENSMUST00000075717.7|Olfr873|ENSMUSG00000049028.9|olfactory receptor 873
mm39_v1_chr10_+_89906956_89906982	0.28206	Pax4	ENSMUST00000183109.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr4_+_136011969_136011996	0.266174	Pax4	ENSMUST00000144217.8|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr17_+_69690314_69690390	0.260043	Pax4	ENSMUST00000062369.14|Zbtb14|ENSMUSG00000049672.16|zinc finger and BTB domain containing 14
mm39_v1_chr5_+_124690908_124690981	0.259037	Pax4	ENSMUST00000071057.14|Ddx55|ENSMUSG00000029389.18|DEAD box helicase 55	ENSMUST00000111438.2|Ddx55|ENSMUSG00000029389.18|DEAD box helicase 55
mm39_v1_chr10_+_127256993_127257073	0.246952	Pax4	ENSMUST00000170336.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chrM_+_11735_11751	0.225184	Pax4	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chr19_+_55169148_55169317	0.219071	Pax4	ENSMUST00000154886.8|Tectb|ENSMUSG00000024979.14|tectorin beta	ENSMUST00000120936.8|Tectb|ENSMUSG00000024979.14|tectorin beta	ENSMUST00000025936.12|Tectb|ENSMUSG00000024979.14|tectorin beta
mm39_v1_chr17_+_47604995_47604995	0.2133	Pax4	ENSMUST00000190020.4|Trerf1|ENSMUSG00000064043.16|transcriptional regulating factor 1
mm39_v1_chr6_+_136495818_136495850	0.206991	Pax4	ENSMUST00000186577.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr7_+_43090206_43090257	0.200489	Pax4	ENSMUST00000040227.3|Cldnd2|ENSMUSG00000038973.3|claudin domain containing 2
mm39_v1_chr10_+_21870565_21870591	0.146305	Pax4	ENSMUST00000020145.12|Sgk1|ENSMUSG00000019970.16|serum/glucocorticoid regulated kinase 1
mm39_v1_chr9_-_101076198_101076278	0.139615	Pax4	ENSMUST00000066773.9|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr9_+_36743980_36744003	0.0920873	Pax4	ENSMUST00000034630.15|Fez1|ENSMUSG00000032118.17|fasciculation and elongation protein zeta 1 (zygin I)
mm39_v1_chrX_-_153911405_153911431	0.0904754	Pax4	ENSMUST00000076671.4|Cldn34b2|ENSMUSG00000057402.6|claudin 34B2
mm39_v1_chr17_+_69690018_69690061	0.0803988	Pax4	ENSMUST00000112674.8|Zbtb14|ENSMUSG00000049672.16|zinc finger and BTB domain containing 14
mm39_v1_chr4_+_146695418_146695418	0.0541466	Pax4	ENSMUST00000130825.8|Zfp993|ENSMUSG00000063245.12|zinc finger protein 993
mm39_v1_chr17_+_17622934_17622970	0.0335837	Pax4	ENSMUST00000115576.3|Lix1|ENSMUSG00000047786.13|limb and CNS expressed 1
mm39_v1_chr3_+_99147677_99147702	0.0297699	Pax4	ENSMUST00000151606.8|Tbx15|ENSMUSG00000027868.12|T-box 15
mm39_v1_chr17_+_34457868_34457938	0.0140786	Pax4	ENSMUST00000095342.11|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000167280.8|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000236838.2|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus
mm39_v1_chr16_-_13548307_13548343	0.00816063	Pax4	ENSMUST00000115807.9|Pla2g10|ENSMUSG00000022683.14|phospholipase A2, group X
mm39_v1_chrX_-_52298601_52298676	0.0050398	Pax4	ENSMUST00000174390.2|Plac1|ENSMUSG00000061082.12|placental specific protein 1
mm39_v1_chr16_-_45664591_45664598	0.00396966	Pax4	ENSMUST00000076333.12|Phldb2|ENSMUSG00000033149.18|pleckstrin homology like domain, family B, member 2
