mm39_v1_chr6_+_125529911_125529943	1.60709	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr5_-_134776101_134776177	1.01873	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015138.13|Eln|ENSMUSG00000029675.13|elastin
mm39_v1_chr14_+_26722319_26722463	0.911305	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035433.10|Hesx1|ENSMUSG00000040726.11|homeobox gene expressed in ES cells
mm39_v1_chr5_+_35156389_35156430	0.879599	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114281.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12	ENSMUST00000114280.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr17_+_12338161_12338235	0.793365	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024594.9|Agpat4|ENSMUSG00000023827.9|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm39_v1_chr17_+_27775637_27775669	0.756086	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117254.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231243.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231358.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000118570.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231796.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr17_+_27775613_27775627	0.751619	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000231780.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232253.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232552.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000117600.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr17_+_27775471_27775609	0.74378	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118599.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232265.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232013.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000114888.11|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231874.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000119486.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231825.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231866.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr19_-_46033353_46033724	0.651824	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000026252.14|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000156585.9|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000185355.7|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000152946.8|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr7_-_45480200_45480368	0.637591	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107723.9|Grwd1|ENSMUSG00000053801.19|glutamate-rich WD repeat containing 1	ENSMUST00000131384.3|Grwd1|ENSMUSG00000053801.19|glutamate-rich WD repeat containing 1
mm39_v1_chr4_+_34893772_34893788	0.577685	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029975.10|Cga|ENSMUSG00000028298.11|glycoprotein hormones, alpha subunit	ENSMUST00000135871.8|Cga|ENSMUSG00000028298.11|glycoprotein hormones, alpha subunit	ENSMUST00000108130.2|Cga|ENSMUSG00000028298.11|glycoprotein hormones, alpha subunit
mm39_v1_chr4_-_43710231_43710255	0.519352	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr5_+_35156454_35156528	0.493531	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114283.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr13_-_22017677_22017677	0.476056	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081342.7|H2ac24|ENSMUSG00000094777.3|H2A clustered histone 24
mm39_v1_chr6_-_116693849_116693885	0.46161	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056623.13|Tmem72|ENSMUSG00000048108.14|transmembrane protein 72
mm39_v1_chr13_+_55547498_55547513	0.453004	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057167.9|Slc34a1|ENSMUSG00000021490.12|solute carrier family 34 (sodium phosphate), member 1
mm39_v1_chr2_-_168608949_168608965	0.452478	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075044.10|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr19_+_45433899_45433982	0.435254	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000224478.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein
mm39_v1_chr3_+_159545309_159545390	0.427616	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068952.10|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator	ENSMUST00000198878.2|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator
mm39_v1_chr14_+_79753055_79753148	0.423339	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr17_+_46471950_46471997	0.407696	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024748.14|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2	ENSMUST00000172170.8|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2
mm39_v1_chr12_-_83534482_83534504	0.397326	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177959.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3	ENSMUST00000178756.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3
mm39_v1_chr5_-_116162415_116162567	0.389492	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031486.14|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit	ENSMUST00000111999.8|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm39_v1_chr7_-_115459082_115459098	0.37952	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000206123.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr2_+_3115250_3115267	0.365459	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072955.12|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr2_+_74528071_74528097	0.348653	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000059272.10|Hoxd9|ENSMUSG00000043342.10|homeobox D9
mm39_v1_chr6_+_15196950_15197041	0.332837	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140557.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000131414.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000115469.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr9_+_96140781_96140838	0.327075	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000190104.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000179416.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000189606.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr2_+_152596075_152596106	0.310337	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000010020.12|Cox4i2|ENSMUSG00000009876.14|cytochrome c oxidase subunit 4I2
mm39_v1_chr2_-_168609110_168609126	0.307308	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029061.12|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4	ENSMUST00000103074.2|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr3_-_154760978_154761044	0.296604	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064076.6|Tnni3k|ENSMUSG00000040086.14|TNNI3 interacting kinase
mm39_v1_chr2_+_127750978_127750978	0.296104	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110344.2|Acoxl|ENSMUSG00000027380.11|acyl-Coenzyme A oxidase-like
mm39_v1_chr18_+_82932747_82932788	0.288733	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000071233.7|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr7_-_66077215_66077265	0.276002	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015278.15|Aldh1a3|ENSMUSG00000015134.16|aldehyde dehydrogenase family 1, subfamily A3
mm39_v1_chr6_-_136758716_136758804	0.26185	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078095.11|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c	ENSMUST00000032338.10|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c
mm39_v1_chr10_+_99099084_99099106	0.260339	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020118.5|Dusp6|ENSMUSG00000019960.9|dual specificity phosphatase 6	ENSMUST00000220291.2|Dusp6|ENSMUSG00000019960.9|dual specificity phosphatase 6
mm39_v1_chr5_-_137530214_137530251	0.257464	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140139.2|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr2_-_111843053_111843053	0.254287	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr16_-_42160957_42161014	0.251194	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102817.5|Gap43|ENSMUSG00000047261.10|growth associated protein 43
mm39_v1_chr19_-_24178000_24178016	0.247441	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000233658.3|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr18_-_43610829_43610868	0.228397	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr10_-_80257681_80257710	0.227409	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156244.2|Tcf3|ENSMUSG00000020167.15|transcription factor 3
mm39_v1_chr19_-_55229668_55229668	0.227035	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000069183.8|Gucy2g|ENSMUSG00000055523.8|guanylate cyclase 2g
mm39_v1_chr2_-_5838489_5838489	0.226417	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128467.4|Cdc123|ENSMUSG00000039128.14|cell division cycle 123
mm39_v1_chr2_+_69050315_69050348	0.223879	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005364.12|G6pc2|ENSMUSG00000005232.12|glucose-6-phosphatase, catalytic, 2	ENSMUST00000112317.3|G6pc2|ENSMUSG00000005232.12|glucose-6-phosphatase, catalytic, 2
mm39_v1_chr8_-_3675274_3675288	0.222022	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004749.7|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chrX_+_158086253_158086277	0.218579	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr14_-_86986541_86986569	0.217276	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000226254.2|Diaph3|ENSMUSG00000022021.15|diaphanous related formin 3
mm39_v1_chr10_+_101994841_101994940	0.209885	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020039.13|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chrX_+_55500170_55500264	0.205804	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr4_+_19280850_19280908	0.205628	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102999.2|Cngb3|ENSMUSG00000056494.8|cyclic nucleotide gated channel beta 3
mm39_v1_chr9_+_106245792_106245839	0.20335	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000172306.3|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr8_+_107757847_107757862	0.201497	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr15_-_66684442_66684499	0.193817	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100572.10|Sla|ENSMUSG00000022372.15|src-like adaptor
mm39_v1_chr8_+_55407872_55407889	0.191062	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr16_-_63684477_63684545	0.189941	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232654.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3	ENSMUST00000064405.8|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chr10_+_115405891_115405927	0.187614	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173620.2|A930009A15Rik|ENSMUSG00000092210.2|RIKEN cDNA A930009A15 gene
mm39_v1_chr3_+_96537235_96537273	0.18641	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000048915.11|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000196456.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000198027.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a
mm39_v1_chr14_-_110992533_110992584	0.183902	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078386.4|Slitrk6|ENSMUSG00000045871.6|SLIT and NTRK-like family, member 6
mm39_v1_chr10_+_73782857_73782903	0.183332	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000191709.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193739.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000195531.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr7_-_44635740_44635780	0.182166	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000209056.3|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000209124.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000208312.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207659.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000045325.14|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr2_+_38231080_38231104	0.180787	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133661.8|Lhx2|ENSMUSG00000000247.12|LIM homeobox protein 2
mm39_v1_chr2_+_71219561_71219622	0.176958	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000028408.3|Hat1|ENSMUSG00000027018.12|histone aminotransferase 1
mm39_v1_chr9_-_40257586_40257634	0.176751	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121357.8|Gramd1b|ENSMUSG00000040111.18|GRAM domain containing 1B
mm39_v1_chr6_-_30936013_30936013	0.175154	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101589.5|Klf14|ENSMUSG00000073209.5|Kruppel-like factor 14
mm39_v1_chr11_+_102495189_102495262	0.174068	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057893.7|Fzd2|ENSMUSG00000050288.7|frizzled class receptor 2
mm39_v1_chr7_-_44635813_44635992	0.171984	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000208829.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207370.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000107843.11|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr17_-_90395771_90395828	0.171801	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000197268.5|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000173917.8|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr3_+_96537484_96537516	0.168499	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000200647.2|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a
mm39_v1_chr15_+_79575046_79575109	0.168488	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046463.10|Gtpbp1|ENSMUSG00000042535.10|GTP binding protein 1
mm39_v1_chr9_+_96140750_96140764	0.168466	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000186609.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr11_-_20282684_20282770	0.165246	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004634.7|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	ENSMUST00000109594.8|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm39_v1_chr3_-_88317601_88317656	0.160681	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000193338.6|Pmf1|ENSMUSG00000028066.16|polyamine-modulated factor 1	ENSMUST00000056370.13|Pmf1|ENSMUSG00000028066.16|polyamine-modulated factor 1
mm39_v1_chr17_-_37523969_37524009	0.159588	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr5_-_138185438_138185499	0.154129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110937.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000139276.2|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000048698.14|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000123415.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr5_-_137529465_137529559	0.153788	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000150063.9|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr11_+_99748741_99748744	0.151506	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107434.2|Gm11568|ENSMUSG00000069717.8|predicted gene 11568
mm39_v1_chr4_+_19818718_19818733	0.146308	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035890.8|Slc7a13|ENSMUSG00000041052.9|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm39_v1_chrX_+_158623460_158623477	0.140016	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112451.8|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1	ENSMUST00000112453.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr13_-_73826108_73826120	0.137097	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222029.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000223074.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000220650.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000221987.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18
mm39_v1_chr16_-_74208180_74208314	0.136663	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr12_-_46863726_46863743	0.135968	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000219330.2|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr7_+_101545547_101545638	0.134632	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr5_-_123126550_123126599	0.134499	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000086200.11|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B	ENSMUST00000156474.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr15_+_6673167_6673187	0.129674	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000163073.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr12_+_52746158_52746186	0.128151	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr11_-_99265721_99265735	0.126817	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr13_-_78344492_78344561	0.126251	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125176.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr7_-_115423934_115423987	0.125569	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169129.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr1_-_4430481_4430537	0.123331	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027032.6|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr7_+_101546059_101546168	0.123139	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chrX_+_132751729_132751878	0.122889	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033602.9|Tnmd|ENSMUSG00000031250.9|tenomodulin
mm39_v1_chr13_+_118851214_118851238	0.11986	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr13_-_73826124_73826145	0.118889	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022105.15|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000109680.10|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000221026.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000109679.4|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18
mm39_v1_chr16_-_63684425_63684443	0.117115	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232049.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chr17_-_49871291_49871371	0.11706	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000224595.2|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2	ENSMUST00000057610.8|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2
mm39_v1_chr3_-_72875187_72875202	0.116015	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167334.8|Sis|ENSMUSG00000027790.15|sucrase isomaltase (alpha-glucosidase)
mm39_v1_chr2_-_168607166_168607181	0.111162	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137536.2|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr8_-_3674993_3675015	0.111098	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000142431.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr8_-_62576140_62576157	0.110322	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034052.14|Anxa10|ENSMUSG00000031635.15|annexin A10	ENSMUST00000034054.9|Anxa10|ENSMUSG00000031635.15|annexin A10
mm39_v1_chr10_-_129107354_129107354	0.110062	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000204573.3|Olfr777|ENSMUSG00000062914.4|olfactory receptor 777
mm39_v1_chr5_-_123127346_123127401	0.10916	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr8_-_3675024_3675049	0.107653	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133459.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr2_-_45007407_45007421	0.107629	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000176438.9|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr11_-_97591150_97591323	0.105378	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000018681.14|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2
mm39_v1_chr5_-_138185686_138185724	0.104661	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110936.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr14_+_32043944_32043999	0.103313	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022480.8|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like	ENSMUST00000228529.2|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like
mm39_v1_chr3_+_66127330_66127348	0.103105	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029421.6|Ptx3|ENSMUSG00000027832.6|pentraxin related gene
mm39_v1_chr8_-_3675525_3675548	0.102323	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144977.2|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)	ENSMUST00000136105.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)	ENSMUST00000128566.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr1_-_52230062_52230090	0.0985617	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156887.8|Gls|ENSMUSG00000026103.15|glutaminase	ENSMUST00000129107.2|Gls|ENSMUSG00000026103.15|glutaminase
mm39_v1_chr11_-_99134885_99134964	0.0978128	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr4_+_5724305_5724357	0.0949091	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108380.2|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr13_+_111391544_111391552	0.0942713	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054716.4|Actbl2|ENSMUSG00000055194.4|actin, beta-like 2
mm39_v1_chrX_+_158491589_158491638	0.0925229	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000080394.13|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr5_-_123127148_123127194	0.0906356	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046073.16|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr1_-_79417732_79417837	0.0894671	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000185234.2|Scg2|ENSMUSG00000050711.8|secretogranin II	ENSMUST00000049972.6|Scg2|ENSMUSG00000050711.8|secretogranin II
mm39_v1_chr3_+_94320548_94320708	0.0894207	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166032.8|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000200486.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000196386.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000045245.10|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000197901.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000198041.2|Gm42463|ENSMUSG00000106032.2|predicted gene 42463
mm39_v1_chr1_-_173018204_173018207	0.0883751	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000215878.2|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406	ENSMUST00000201132.3|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406
mm39_v1_chr13_+_83723743_83723796	0.088347	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000198217.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000199210.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr18_-_24736848_24736900	0.0873314	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070726.10|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr15_+_21111428_21111538	0.0859925	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075132.8|Cdh12|ENSMUSG00000040452.10|cadherin 12
mm39_v1_chr2_+_85648823_85648823	0.0851067	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214416.2|Olfr1018|ENSMUSG00000043892.4|olfactory receptor 1018
mm39_v1_chr11_+_51989508_51989640	0.0846544	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020608.3|Ppp2ca|ENSMUSG00000020349.5|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm39_v1_chr4_-_58206596_58206616	0.0827775	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042850.9|Svep1|ENSMUSG00000028369.16|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm39_v1_chr12_+_38833501_38833526	0.0822426	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159334.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr6_-_102441628_102441628	0.0816611	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032159.7|Cntn3|ENSMUSG00000030075.11|contactin 3
mm39_v1_chr9_+_38788422_38788422	0.0812089	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078289.3|Olfr926|ENSMUSG00000064333.3|olfactory receptor 926
mm39_v1_chr16_-_74208395_74208431	0.0802915	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227347.2|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr17_+_75312520_75312563	0.0800406	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr12_+_38833454_38833482	0.0800082	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161980.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160701.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr16_-_95387444_95387454	0.0784574	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000233269.2|Erg|ENSMUSG00000040732.21|ETS transcription factor
mm39_v1_chr2_+_85838122_85838122	0.0730602	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062166.2|Olfr1032|ENSMUSG00000042796.3|olfactory receptor 1032
mm39_v1_chr10_+_101994719_101994750	0.0724617	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138522.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000163753.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000138016.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr17_-_31417932_31417951	0.0721677	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114549.4|Tmprss3|ENSMUSG00000024034.14|transmembrane protease, serine 3
mm39_v1_chr5_-_87630117_87630142	0.0716685	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079811.13|Ugt2a2|ENSMUSG00000029268.15|UDP glucuronosyltransferase 2 family, polypeptide A2	ENSMUST00000144144.3|Ugt2a2|ENSMUSG00000029268.15|UDP glucuronosyltransferase 2 family, polypeptide A2
mm39_v1_chr13_-_113800172_113800212	0.0716346	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054650.5|Hspb3|ENSMUSG00000051456.5|heat shock protein 3
mm39_v1_chr17_-_36008863_36008894	0.0712325	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146472.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr12_-_111947487_111947498	0.0710534	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000190536.2|Rd3l|ENSMUSG00000091402.8|retinal degeneration 3-like
mm39_v1_chr19_+_24651362_24651381	0.0702436	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057243.6|Tmem252|ENSMUSG00000048572.6|transmembrane protein 252
mm39_v1_chr10_+_127256736_127256786	0.0698782	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064793.13|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr12_-_101784727_101784800	0.0693274	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222587.2|Fbln5|ENSMUSG00000021186.10|fibulin 5
mm39_v1_chr10_+_127257077_127257104	0.0685393	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000168780.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr6_+_136509922_136509937	0.0663838	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000187429.4|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr5_-_23821523_23821596	0.0645476	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr12_-_111947536_111947547	0.0642826	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000185354.2|Rd3l|ENSMUSG00000091402.8|retinal degeneration 3-like
mm39_v1_chr2_-_88157559_88157559	0.0639949	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214207.2|Olfr1175|ENSMUSG00000083855.7|olfactory receptor 1175
mm39_v1_chr3_-_37286714_37286786	0.0634768	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161015.2|Il21|ENSMUSG00000027718.9|interleukin 21	ENSMUST00000029273.8|Il21|ENSMUSG00000027718.9|interleukin 21
mm39_v1_chr16_+_44913974_44913985	0.0622985	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099498.10|Ccdc80|ENSMUSG00000022665.16|coiled-coil domain containing 80
mm39_v1_chr18_-_24736521_24736609	0.0617188	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000154205.2|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr2_-_86109346_86109432	0.0604472	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217294.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000217245.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000216432.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051
mm39_v1_chr1_-_93088562_93088592	0.0602799	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143419.2|Mab21l4|ENSMUSG00000034159.13|mab-21-like 4
mm39_v1_chr8_+_57774010_57774027	0.0598208	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040104.5|Hand2|ENSMUSG00000038193.5|heart and neural crest derivatives expressed 2
mm39_v1_chr8_+_10299288_10299367	0.059566	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214643.2|Myo16|ENSMUSG00000039057.12|myosin XVI
mm39_v1_chr17_-_30107544_30107682	0.0571463	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171691.9|Mdga1|ENSMUSG00000043557.17|MAM domain containing glycosylphosphatidylinositol anchor 1
mm39_v1_chr2_+_170353338_170353480	0.0565035	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136839.2|Pfdn4|ENSMUSG00000052033.14|prefoldin 4	ENSMUST00000109148.8|Pfdn4|ENSMUSG00000052033.14|prefoldin 4	ENSMUST00000170167.8|Pfdn4|ENSMUSG00000052033.14|prefoldin 4
mm39_v1_chr4_+_80752360_80752467	0.0557605	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133655.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1	ENSMUST00000006151.13|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr6_-_52203146_52203176	0.0539303	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr14_+_8283087_8283087	0.0534044	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000206298.3|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720	ENSMUST00000216079.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr3_+_96175970_96176004	0.0532317	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098843.3|H3c13|ENSMUSG00000074403.3|H3 clustered histone 13
mm39_v1_chr9_+_61279640_61279665	0.0520486	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178113.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159386.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr8_+_121842902_121842916	0.0517009	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chr19_+_26727111_26727277	0.0514188	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175842.4|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr4_+_80752535_80752550	0.0503833	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102831.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr3_+_103739877_103739917	0.0503694	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062945.12|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr14_-_54651442_54651542	0.0500162	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227334.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr3_+_68479578_68479723	0.0488022	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170788.9|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr10_+_127256993_127257073	0.0471832	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170336.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr12_-_11258973_11258973	0.0470076	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049877.3|Msgn1|ENSMUSG00000047002.3|mesogenin 1
mm39_v1_chr10_+_88721854_88721872	0.0470017	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020255.8|Slc5a8|ENSMUSG00000020062.8|solute carrier family 5 (iodide transporter), member 8
mm39_v1_chr13_+_16186410_16186436	0.0465594	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042603.14|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr5_+_64969679_64969727	0.0460355	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166409.6|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)	ENSMUST00000197879.2|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr11_+_98689479_98689490	0.0451382	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037930.13|Msl1|ENSMUSG00000052915.15|male specific lethal 1
mm39_v1_chr18_+_44204457_44204489	0.0441434	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068473.4|Spink6|ENSMUSG00000055095.4|serine peptidase inhibitor, Kazal type 6	ENSMUST00000236634.2|Spink6|ENSMUSG00000055095.4|serine peptidase inhibitor, Kazal type 6
mm39_v1_chr6_-_23650205_23650271	0.043364	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115354.2|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr14_-_52277310_52277358	0.0430653	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000216907.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000214071.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000216188.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr16_-_56688024_56688078	0.0422219	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232373.2|Tmem45a|ENSMUSG00000022754.7|transmembrane protein 45a
mm39_v1_chr17_-_31417834_31417886	0.0417074	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000236793.2|Tmprss3|ENSMUSG00000024034.14|transmembrane protease, serine 3
mm39_v1_chr14_-_52341426_52341468	0.0410884	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227536.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227195.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228815.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228198.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227458.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228232.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227242.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228748.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chr14_-_52341472_52341485	0.0402394	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111610.12|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000164655.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chrX_-_94701983_94702115	0.039413	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119640.8|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing	ENSMUST00000120620.8|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing	ENSMUST00000044382.7|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing
mm39_v1_chr11_-_33942981_33942998	0.0388257	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000238903.2|Kcnip1|ENSMUSG00000053519.18|Kv channel-interacting protein 1
mm39_v1_chr5_+_107656810_107656810	0.0386128	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160160.6|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr18_+_37898633_37898633	0.0383543	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044851.8|Pcdhga12|ENSMUSG00000102428.2|protocadherin gamma subfamily A, 12
mm39_v1_chr7_+_144392323_144392354	0.0380008	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105898.2|Fgf3|ENSMUSG00000031074.15|fibroblast growth factor 3
mm39_v1_chr6_+_87405968_87405982	0.0370167	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032125.7|Bmp10|ENSMUSG00000030046.7|bone morphogenetic protein 10
mm39_v1_chr11_+_116734104_116734104	0.0367565	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106370.10|Mettl23|ENSMUSG00000090266.11|methyltransferase like 23
mm39_v1_chr2_+_106523532_106523624	0.0366608	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr17_+_17622934_17622970	0.0362073	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115576.3|Lix1|ENSMUSG00000047786.13|limb and CNS expressed 1
mm39_v1_chr3_-_54962458_54962476	0.0358034	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199352.2|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000198320.5|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000029368.7|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr5_+_138185747_138185829	0.035782	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110934.9|Cnpy4|ENSMUSG00000036968.16|canopy FGF signaling regulator 4
mm39_v1_chr11_-_97944239_97944293	0.0354235	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000017544.9|Stac2|ENSMUSG00000017400.11|SH3 and cysteine rich domain 2
mm39_v1_chr3_+_125197722_125197780	0.0351192	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173932.8|Ndst4|ENSMUSG00000027971.17|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm39_v1_chr4_-_58499398_58499409	0.0343196	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107570.2|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr14_+_8282925_8282925	0.0335755	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217642.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr7_-_115797722_115797796	0.0333307	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181981.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chr2_-_45002902_45003021	0.0332596	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr11_+_67090878_67090964	0.0330657	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124516.8|Myh1|ENSMUSG00000056328.15|myosin, heavy polypeptide 1, skeletal muscle, adult	ENSMUST00000018637.15|Myh1|ENSMUSG00000056328.15|myosin, heavy polypeptide 1, skeletal muscle, adult	ENSMUST00000129018.8|Myh1|ENSMUSG00000056328.15|myosin, heavy polypeptide 1, skeletal muscle, adult
mm39_v1_chr19_-_12018681_12018681	0.0330228	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214472.2|Olfr1423|ENSMUSG00000067529.3|olfactory receptor 1423
mm39_v1_chr2_+_9887427_9887455	0.0327062	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114919.2|4930412O13Rik|ENSMUSG00000025783.3|RIKEN cDNA 4930412O13 gene
mm39_v1_chr13_-_64645606_64645606	0.0325274	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180282.2|Fam240b|ENSMUSG00000096537.7|family with sequence similarity 240 member B
mm39_v1_chr13_-_23302396_23302396	0.0325233	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227110.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr10_+_32959472_32959563	0.0325033	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095762.5|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000218281.2|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000217779.2|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000219665.2|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000219931.2|Trdn|ENSMUSG00000019787.10|triadin
mm39_v1_chr15_+_28203872_28203898	0.031554	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067048.8|Dnah5|ENSMUSG00000022262.9|dynein, axonemal, heavy chain 5
mm39_v1_chr4_-_52919172_52919178	0.0310945	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107667.3|Olfr272|ENSMUSG00000051593.5|olfactory receptor 272	ENSMUST00000213989.2|Olfr272|ENSMUSG00000051593.5|olfactory receptor 272
mm39_v1_chr13_+_23758555_23758623	0.0298571	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090776.7|H2ac7|ENSMUSG00000071478.7|H2A clustered histone 7
mm39_v1_chr2_-_87504008_87504008	0.0292561	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000213835.2|Olfr1135|ENSMUSG00000075153.3|olfactory receptor 1135
mm39_v1_chr16_-_92196954_92196971	0.0291766	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000023672.10|Rcan1|ENSMUSG00000022951.17|regulator of calcineurin 1
mm39_v1_chr1_-_171854818_171854880	0.0288502	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr19_-_5610628_5610674	0.0279988	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025861.3|Ovol1|ENSMUSG00000024922.3|ovo like zinc finger 1
mm39_v1_chr1_+_172383499_172383509	0.0271686	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061835.10|Vsig8|ENSMUSG00000049598.10|V-set and immunoglobulin domain containing 8
mm39_v1_chr6_+_63232955_63233024	0.026742	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095852.5|Grid2|ENSMUSG00000071424.11|glutamate receptor, ionotropic, delta 2
mm39_v1_chr3_+_67799510_67799565	0.0264434	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000063263.5|Iqcj|ENSMUSG00000051777.7|IQ motif containing J	ENSMUST00000182006.4|Iqschfp|ENSMUSG00000102422.2|Iqcj and Schip1 fusion protein
mm39_v1_chr5_-_65855511_65855596	0.0252085	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000201948.4|Pds5a|ENSMUSG00000029202.13|PDS5 cohesin associated factor A
mm39_v1_chr12_+_70499869_70499881	0.0250473	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021471.13|Tmx1|ENSMUSG00000021072.13|thioredoxin-related transmembrane protein 1
mm39_v1_chr5_+_27466914_27467004	0.024983	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101471.4|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr8_-_37420293_37420314	0.0243771	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179501.2|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr5_-_5315968_5316292	0.0238102	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115451.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000115452.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000131392.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14
mm39_v1_chr2_-_79287095_79287102	0.0227262	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr5_+_139529643_139529662	0.0223848	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000174792.2|Uncx|ENSMUSG00000029546.13|UNC homeobox
mm39_v1_chr19_-_13828056_13828056	0.0222684	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000208493.3|Olfr1501|ENSMUSG00000057270.4|olfactory receptor 1501
mm39_v1_chr5_+_13448833_13448964	0.0214901	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137798.10|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr6_+_134958681_134958681	0.0212254	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167323.3|Apold1|ENSMUSG00000090698.3|apolipoprotein L domain containing 1
mm39_v1_chr6_-_128252540_128252540	0.0210751	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000130454.8|Tead4|ENSMUSG00000030353.16|TEA domain family member 4
mm39_v1_chr10_+_127919142_127919183	0.0210275	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000026459.6|Atp5b|ENSMUSG00000025393.13|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm39_v1_chr13_+_83723255_83723329	0.020601	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199167.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000195904.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr6_+_136528155_136528189	0.0205915	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000186742.2|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr10_-_43934774_43934879	0.0203359	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239010.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr18_+_57601541_57601614	0.0201397	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000091892.4|Ctxn3|ENSMUSG00000069372.4|cortexin 3	ENSMUST00000209782.2|Ctxn3|ENSMUSG00000069372.4|cortexin 3
mm39_v1_chr6_+_29859660_29859684	0.0198624	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128927.9|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr3_-_144514386_144514386	0.0196286	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000197013.2|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chr19_-_14575395_14575451	0.0195301	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052011.15|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4	ENSMUST00000167776.3|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4
mm39_v1_chr13_-_23302027_23302027	0.0194613	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000228656.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr2_+_111355548_111355548	0.0189194	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr12_+_38831093_38831128	0.0176844	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161513.9|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr2_+_129854256_129854270	0.0170656	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110299.3|Tgm3|ENSMUSG00000027401.10|transglutaminase 3, E polypeptide
mm39_v1_chr9_+_55448432_55448493	0.0169931	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034869.11|Isl2|ENSMUSG00000032318.13|insulin related protein 2 (islet 2)
mm39_v1_chr1_-_126665904_126665968	0.0160673	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160693.2|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5
mm39_v1_chr6_+_29859685_29859709	0.0157199	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134438.2|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr3_-_59127571_59127680	0.0156867	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199675.2|P2ry12|ENSMUSG00000036353.14|purinergic receptor P2Y, G-protein coupled 12	ENSMUST00000170388.6|P2ry12|ENSMUSG00000036353.14|purinergic receptor P2Y, G-protein coupled 12
mm39_v1_chr9_+_43222104_43222145	0.0151561	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034511.7|Trim29|ENSMUSG00000032013.7|tripartite motif-containing 29
mm39_v1_chr11_-_77079794_77079794	0.0151393	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108400.8|Efcab5|ENSMUSG00000050944.15|EF-hand calcium binding domain 5
mm39_v1_chr7_+_28580847_28580847	0.0149025	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066880.6|Capn12|ENSMUSG00000054083.9|calpain 12
mm39_v1_chr12_-_21467437_21467638	0.0148325	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103002.8|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000155480.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000135088.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
mm39_v1_chr19_-_13827773_13827773	0.0147609	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000215350.2|Olfr1501|ENSMUSG00000057270.4|olfactory receptor 1501
mm39_v1_chr19_-_11816583_11816583	0.0146183	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214887.2|Olfr1417|ENSMUSG00000048292.4|olfactory receptor 1417
mm39_v1_chr14_-_48904958_48904994	0.0133696	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144465.8|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2	ENSMUST00000133479.8|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2	ENSMUST00000119070.8|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2	ENSMUST00000226501.2|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr16_-_96971905_96971952	0.0133205	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056102.9|Dscam|ENSMUSG00000050272.11|DS cell adhesion molecule
mm39_v1_chr19_+_12364643_12364664	0.0131051	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217062.3|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000216145.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000213657.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440
mm39_v1_chr5_-_53864874_53865047	0.0130294	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031093.5|Cckar|ENSMUSG00000029193.8|cholecystokinin A receptor
mm39_v1_chr2_+_153742294_153742315	0.0120935	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088955.12|Bpifb6|ENSMUSG00000068009.12|BPI fold containing family B, member 6	ENSMUST00000135501.3|Bpifb6|ENSMUSG00000068009.12|BPI fold containing family B, member 6
mm39_v1_chr5_+_13448647_13448663	0.0114284	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125629.8|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr17_+_47221377_47221390	0.011347	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024773.6|Prph2|ENSMUSG00000023978.6|peripherin 2
mm39_v1_chr12_-_56581823_56581891	0.0110714	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178477.9|Nkx2-1|ENSMUSG00000001496.16|NK2 homeobox 1
mm39_v1_chr2_-_17465410_17465446	0.010862	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000145492.2|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr3_+_10153163_10153190	0.0107522	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061419.9|Gm9833|ENSMUSG00000049230.9|predicted gene 9833
mm39_v1_chrX_-_156198282_156198309	0.0105208	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079945.11|Phex|ENSMUSG00000057457.12|phosphate regulating endopeptidase homolog, X-linked	ENSMUST00000138396.3|Phex|ENSMUSG00000057457.12|phosphate regulating endopeptidase homolog, X-linked
mm39_v1_chr16_+_35861554_35861605	0.010033	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042203.10|Wdr5b|ENSMUSG00000034379.10|WD repeat domain 5B
mm39_v1_chr13_+_42834039_42834099	0.00961631	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128646.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chrX_+_41241049_41241072	0.009129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128799.3|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr16_+_43574389_43574389	0.00899291	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000229953.2|Drd3|ENSMUSG00000022705.6|dopamine receptor D3
mm39_v1_chr2_-_160155536_160155536	0.00894809	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109475.3|Gm826|ENSMUSG00000074623.5|predicted gene 826
mm39_v1_chr12_+_55286111_55286111	0.0084352	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164243.2|Srp54c|ENSMUSG00000079108.7|signal recognition particle 54C
mm39_v1_chr16_-_57575070_57575100	0.00777258	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000089332.5|Col8a1|ENSMUSG00000068196.6|collagen, type VIII, alpha 1
mm39_v1_chr9_-_79885063_79885091	0.00747701	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093811.11|Filip1|ENSMUSG00000034898.18|filamin A interacting protein 1
mm39_v1_chr17_+_49922129_49922200	0.00747312	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162854.2|Kif6|ENSMUSG00000023999.15|kinesin family member 6
mm39_v1_chr17_+_34258411_34258455	0.00745682	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000087497.11|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000131134.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000235819.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114255.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114252.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000237989.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2
mm39_v1_chr17_-_37430949_37430975	0.00731283	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214994.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92	ENSMUST00000216341.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92
mm39_v1_chr11_+_16207705_16207808	0.00703969	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109645.9|Vstm2a|ENSMUSG00000048834.17|V-set and transmembrane domain containing 2A	ENSMUST00000109647.3|Vstm2a|ENSMUSG00000048834.17|V-set and transmembrane domain containing 2A
mm39_v1_chr14_+_54183465_54183530	0.0069844	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000197130.5|Trdv2-1|ENSMUSG00000076865.7|T cell receptor delta variable 2-1	ENSMUST00000103677.3|Trdv2-1|ENSMUSG00000076865.7|T cell receptor delta variable 2-1
mm39_v1_chr3_-_146388165_146388277	0.00673948	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124931.8|Samd13|ENSMUSG00000048652.13|sterile alpha motif domain containing 13	ENSMUST00000147113.2|Samd13|ENSMUSG00000048652.13|sterile alpha motif domain containing 13
mm39_v1_chr3_+_55689921_55689940	0.0065172	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075422.6|Mab21l1|ENSMUSG00000056947.6|mab-21-like 1
mm39_v1_chr15_-_34356567_34356567	0.00561713	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179647.2|9430069I07Rik|ENSMUSG00000094447.3|RIKEN cDNA 9430069I07 gene
mm39_v1_chr5_+_115373895_115373895	0.00553285	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081497.13|Pop5|ENSMUSG00000060152.15|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm39_v1_chr13_-_23041731_23041731	0.0054763	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000228645.2|Vmn1r211|ENSMUSG00000063998.5|vomeronasal 1 receptor 211
mm39_v1_chr13_+_23191826_23191826	0.00505062	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000228758.2|Vmn1r213|ENSMUSG00000060024.3|vomeronasal 1 receptor 213	ENSMUST00000228031.2|Vmn1r213|ENSMUSG00000060024.3|vomeronasal 1 receptor 213	ENSMUST00000227573.2|Vmn1r213|ENSMUSG00000060024.3|vomeronasal 1 receptor 213
mm39_v1_chr10_+_59239466_59239491	0.00489093	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000009790.14|Pla2g12b|ENSMUSG00000009646.14|phospholipase A2, group XIIB
mm39_v1_chr2_-_111820618_111820626	0.00441213	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000216948.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000214935.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000217452.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000215045.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309
mm39_v1_chr9_+_13298301_13298348	0.00401987	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159294.9|Maml2|ENSMUSG00000031925.18|mastermind like transcriptional coactivator 2
mm39_v1_chr12_+_108145802_108145842	0.00369145	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr8_-_71978355_71978374	0.00342723	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000207913.2|Ccdc194|ENSMUSG00000108900.2|coiled-coil domain containing 194
mm39_v1_chrX_+_159551171_159551179	0.00315769	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112368.3|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr2_-_45001141_45001186	0.0030322	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000201969.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201623.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr11_+_66802807_66802829	0.00286758	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000123434.3|Pirt|ENSMUSG00000048070.5|phosphoinositide-interacting regulator of transient receptor potential channels
mm39_v1_chr3_+_63988968_63988968	0.00259083	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029406.6|Vmn2r1|ENSMUSG00000027824.6|vomeronasal 2, receptor 1
mm39_v1_chr9_-_79884920_79884944	0.00254263	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239133.2|Filip1|ENSMUSG00000034898.18|filamin A interacting protein 1
mm39_v1_chr2_-_45000389_45000766	0.00222076	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr5_+_14075281_14075305	0.00202859	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073957.8|Sema3e|ENSMUSG00000063531.8|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm39_v1_chrX_-_74460137_74460161	0.00202244	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033542.11|Mtcp1|ENSMUSG00000031200.17|mature T cell proliferation 1
mm39_v1_chr2_+_177969456_177969585	0.00149261	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133267.3|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr4_+_114678919_114678919	0.00139809	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137570.2|Gm12830|ENSMUSG00000055198.4|predicted gene 12830
mm39_v1_chr17_-_72059865_72059889	0.00122499	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057405.9|Pcare|ENSMUSG00000044375.9|photoreceptor cilium actin regulator
mm39_v1_chr11_-_87249837_87249901	0.00117879	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr16_-_29363671_29363687	0.000768849	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039090.9|Atp13a4|ENSMUSG00000038094.16|ATPase type 13A4
mm39_v1_chr4_-_97472844_97472880	0.000754309	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107067.8|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene	ENSMUST00000107068.9|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene
mm39_v1_chr1_-_92446383_92446383	0.00038489	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062353.12|Olfr1414|ENSMUSG00000042849.12|olfactory receptor 1414
mm39_v1_chr6_+_28480336_28480369	0.000166916	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001460.14|Snd1|ENSMUSG00000001424.15|staphylococcal nuclease and tudor domain containing 1	ENSMUST00000167201.2|Snd1|ENSMUSG00000001424.15|staphylococcal nuclease and tudor domain containing 1
