mm39_v1_chr4_-_61259997_61259999	24.487	Hoxa4	ENSMUST00000071005.9|Mup14|ENSMUSG00000073830.12|major urinary protein 14	ENSMUST00000075206.12|Mup14|ENSMUSG00000073830.12|major urinary protein 14
mm39_v1_chr4_-_60222580_60222599	22.837	Hoxa4	ENSMUST00000095058.5|Mup8|ENSMUSG00000078687.10|major urinary protein 8	ENSMUST00000163931.8|Mup8|ENSMUSG00000078687.10|major urinary protein 8
mm39_v1_chr4_-_61259801_61259801	22.4497	Hoxa4	ENSMUST00000125461.8|Mup14|ENSMUSG00000073830.12|major urinary protein 14
mm39_v1_chr4_-_60697274_60697325	14.1242	Hoxa4	ENSMUST00000117932.2|Mup12|ENSMUSG00000094793.2|major urinary protein 12
mm39_v1_chr7_-_19432933_19433113	11.2896	Hoxa4	ENSMUST00000174355.8|Apoe|ENSMUSG00000002985.17|apolipoprotein E	ENSMUST00000172983.8|Apoe|ENSMUSG00000002985.17|apolipoprotein E	ENSMUST00000174710.2|Apoe|ENSMUSG00000002985.17|apolipoprotein E	ENSMUST00000003066.16|Apoe|ENSMUSG00000002985.17|apolipoprotein E	ENSMUST00000174064.9|Apoe|ENSMUSG00000002985.17|apolipoprotein E
mm39_v1_chr5_-_87074380_87074396	8.52148	Hoxa4	ENSMUST00000031183.3|Ugt2b1|ENSMUSG00000035836.3|UDP glucuronosyltransferase 2 family, polypeptide B1
mm39_v1_chr1_-_180021039_180021057	6.65295	Hoxa4	ENSMUST00000160482.8|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A	ENSMUST00000170472.8|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A
mm39_v1_chr9_-_50466470_50466485	6.5111	Hoxa4	ENSMUST00000119103.2|Bco2|ENSMUSG00000032066.10|beta-carotene oxygenase 2
mm39_v1_chr1_-_180021218_180021231	5.9576	Hoxa4	ENSMUST00000159914.8|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A
mm39_v1_chr7_+_51528715_51528750	5.67911	Hoxa4	ENSMUST00000051912.13|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr10_+_87695117_87695128	5.58699	Hoxa4	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr7_+_51528788_51528813	5.13837	Hoxa4	ENSMUST00000107591.9|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr1_+_74324089_74324231	4.63942	Hoxa4	ENSMUST00000113805.8|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000027370.13|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000087226.11|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia
mm39_v1_chr10_+_87694924_87694935	4.51418	Hoxa4	ENSMUST00000095360.11|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr16_+_37400590_37400617	4.26846	Hoxa4	ENSMUST00000159787.8|Hgd|ENSMUSG00000022821.14|homogentisate 1, 2-dioxygenase
mm39_v1_chr16_+_22676589_22676664	4.13411	Hoxa4	ENSMUST00000004574.14|Dnajb11|ENSMUSG00000004460.18|DnaJ heat shock protein family (Hsp40) member B11	ENSMUST00000178320.2|Dnajb11|ENSMUSG00000004460.18|DnaJ heat shock protein family (Hsp40) member B11	ENSMUST00000166487.10|Dnajb11|ENSMUSG00000004460.18|DnaJ heat shock protein family (Hsp40) member B11
mm39_v1_chr1_+_87998487_87998522	3.94771	Hoxa4	ENSMUST00000073772.5|Ugt1a9|ENSMUSG00000090175.2|UDP glucuronosyltransferase 1 family, polypeptide A9
mm39_v1_chr16_+_37400500_37400515	3.84839	Hoxa4	ENSMUST00000160847.2|Hgd|ENSMUSG00000022821.14|homogentisate 1, 2-dioxygenase
mm39_v1_chr11_-_43727071_43727159	3.7365	Hoxa4	ENSMUST00000167574.2|Adra1b|ENSMUSG00000050541.15|adrenergic receptor, alpha 1b
mm39_v1_chr9_-_65792306_65792350	3.71695	Hoxa4	ENSMUST00000122410.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4	ENSMUST00000117083.2|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4
mm39_v1_chr6_-_116084810_116084841	3.58375	Hoxa4	ENSMUST00000204353.3|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr15_+_10249646_10249664	3.54449	Hoxa4	ENSMUST00000134410.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chrM_+_5319_5333	3.34377	Hoxa4	ENSMUST00000082402.1|mt-Co1|ENSMUSG00000064351.1|mitochondrially encoded cytochrome c oxidase I
mm39_v1_chr12_-_57592907_57592926	3.22735	Hoxa4	ENSMUST00000044380.8|Foxa1|ENSMUSG00000035451.8|forkhead box A1
mm39_v1_chr11_-_116080361_116080401	3.14163	Hoxa4	ENSMUST00000148601.2|Acox1|ENSMUSG00000020777.17|acyl-Coenzyme A oxidase 1, palmitoyl
mm39_v1_chr12_+_59176543_59176604	3.04243	Hoxa4	ENSMUST00000069430.15|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000177370.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2
mm39_v1_chr11_+_94219046_94219105	3.01879	Hoxa4	ENSMUST00000021227.6|Ankrd40|ENSMUSG00000020864.14|ankyrin repeat domain 40
mm39_v1_chr2_-_5680801_5680857	2.94621	Hoxa4	ENSMUST00000114987.4|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr2_+_70305267_70305267	2.83771	Hoxa4	ENSMUST00000100043.3|Sp5|ENSMUSG00000075304.3|trans-acting transcription factor 5
mm39_v1_chr11_+_94218810_94218858	2.7619	Hoxa4	ENSMUST00000107818.9|Ankrd40|ENSMUSG00000020864.14|ankyrin repeat domain 40	ENSMUST00000051221.13|Ankrd40|ENSMUSG00000020864.14|ankyrin repeat domain 40
mm39_v1_chr10_-_126956991_126957019	2.73423	Hoxa4	ENSMUST00000080975.6|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma	ENSMUST00000164259.9|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma
mm39_v1_chr5_+_73648368_73648452	2.55694	Hoxa4	ENSMUST00000113558.8|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	ENSMUST00000063882.12|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm39_v1_chr5_+_42225303_42225303	2.54934	Hoxa4	ENSMUST00000087332.5|Gm16223|ENSMUSG00000067285.5|predicted gene 16223
mm39_v1_chr12_+_59176506_59176541	2.50501	Hoxa4	ENSMUST00000175912.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000176892.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2
mm39_v1_chr19_+_31846154_31846187	2.43496	Hoxa4	ENSMUST00000224564.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224304.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000075838.8|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224400.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor
mm39_v1_chr6_+_43242516_43242643	2.42301	Hoxa4	ENSMUST00000031750.14|Arhgef5|ENSMUSG00000033542.14|Rho guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr4_-_134099840_134099873	2.41766	Hoxa4	ENSMUST00000030643.3|Extl1|ENSMUSG00000028838.12|exostosin-like glycosyltransferase 1
mm39_v1_chrX_-_105647282_105647292	2.02126	Hoxa4	ENSMUST00000113480.2|Cysltr1|ENSMUSG00000052821.4|cysteinyl leukotriene receptor 1
mm39_v1_chr5_+_30972067_30972120	1.99901	Hoxa4	ENSMUST00000200692.4|Mapre3|ENSMUSG00000029166.15|microtubule-associated protein, RP/EB family, member 3
mm39_v1_chr14_+_47069582_47069623	1.95997	Hoxa4	ENSMUST00000068532.10|Cgrrf1|ENSMUSG00000055128.16|cell growth regulator with ring finger domain 1
mm39_v1_chr1_-_93406091_93406113	1.95321	Hoxa4	ENSMUST00000188165.2|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein
mm39_v1_chrM_+_10167_10167	1.91106	Hoxa4	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm39_v1_chr1_+_133109059_133109145	1.84675	Hoxa4	ENSMUST00000187285.7|Plekha6|ENSMUSG00000041757.18|pleckstrin homology domain containing, family A member 6
mm39_v1_chr7_+_65343156_65343272	1.80727	Hoxa4	ENSMUST00000032726.14|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000107495.5|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000143508.3|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000129166.3|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206517.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206837.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206628.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206361.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3
mm39_v1_chr9_+_7445822_7445855	1.78261	Hoxa4	ENSMUST00000034497.8|Mmp3|ENSMUSG00000043613.9|matrix metallopeptidase 3
mm39_v1_chr10_+_84591919_84591948	1.74621	Hoxa4	ENSMUST00000060397.13|Rfx4|ENSMUSG00000020037.16|regulatory factor X, 4 (influences HLA class II expression)
mm39_v1_chr5_-_146157711_146157801	1.71222	Hoxa4	ENSMUST00000169407.9|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000161331.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000159074.3|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000067837.10|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr19_+_24853039_24853057	1.6968	Hoxa4	ENSMUST00000073080.7|Gm10053|ENSMUSG00000058927.7|predicted gene 10053
mm39_v1_chr19_-_20931566_20931652	1.67112	Hoxa4	ENSMUST00000039500.4|Tmc1|ENSMUSG00000024749.10|transmembrane channel-like gene family 1
mm39_v1_chr1_-_93406515_93406544	1.65504	Hoxa4	ENSMUST00000170883.8|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein	ENSMUST00000189025.7|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein
mm39_v1_chr16_-_50252703_50252772	1.65193	Hoxa4	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr1_-_14374794_14374833	1.64971	Hoxa4	ENSMUST00000190337.7|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr1_-_14374842_14374908	1.59713	Hoxa4	ENSMUST00000188857.7|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1	ENSMUST00000185453.7|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr2_+_20742115_20742152	1.49619	Hoxa4	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr10_+_53213763_53213820	1.47333	Hoxa4	ENSMUST00000219491.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000163319.9|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000220197.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000046221.8|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000218468.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000219921.2|Pln|ENSMUSG00000038583.14|phospholamban
mm39_v1_chr14_-_51134930_51134964	1.40549	Hoxa4	ENSMUST00000227271.2|Klhl33|ENSMUSG00000090799.3|kelch-like 33
mm39_v1_chr11_-_99213769_99213783	1.39853	Hoxa4	ENSMUST00000038004.3|Krt25|ENSMUSG00000035831.3|keratin 25
mm39_v1_chr11_-_74228504_74228504	1.38713	Hoxa4	ENSMUST00000213831.2|Olfr410|ENSMUSG00000063116.5|olfactory receptor 410
mm39_v1_chr12_-_83609217_83609241	1.35099	Hoxa4	ENSMUST00000222448.2|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr2_+_70393782_70393805	1.34964	Hoxa4	ENSMUST00000123330.3|Gad1|ENSMUSG00000070880.11|glutamate decarboxylase 1
mm39_v1_chr19_-_43879031_43879130	1.34903	Hoxa4	ENSMUST00000212048.2|Dnmbp|ENSMUSG00000025195.10|dynamin binding protein
mm39_v1_chr6_+_54017063_54017077	1.34255	Hoxa4	ENSMUST00000127323.3|Chn2|ENSMUSG00000004633.18|chimerin 2
mm39_v1_chr4_+_11579648_11579674	1.32131	Hoxa4	ENSMUST00000180239.2|Fsbp|ENSMUSG00000094595.2|fibrinogen silencer binding protein
mm39_v1_chr19_+_11943265_11943305	1.32015	Hoxa4	ENSMUST00000025590.11|Osbp|ENSMUSG00000024687.12|oxysterol binding protein
mm39_v1_chr7_-_84339156_84339172	1.30555	Hoxa4	ENSMUST00000209117.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000207975.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6
mm39_v1_chr14_-_80008745_80008758	1.28437	Hoxa4	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr14_+_47069667_47069731	1.27793	Hoxa4	ENSMUST00000140114.3|Cgrrf1|ENSMUSG00000055128.16|cell growth regulator with ring finger domain 1	ENSMUST00000133989.8|Cgrrf1|ENSMUSG00000055128.16|cell growth regulator with ring finger domain 1
mm39_v1_chr2_-_57003064_57003084	1.25257	Hoxa4	ENSMUST00000112627.2|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr10_+_63293284_63293318	1.24421	Hoxa4	ENSMUST00000105440.8|Ctnna3|ENSMUSG00000060843.12|catenin (cadherin associated protein), alpha 3
mm39_v1_chr16_-_35891739_35891974	1.24087	Hoxa4	ENSMUST00000231351.2|Fam162a|ENSMUSG00000003955.9|family with sequence similarity 162, member A	ENSMUST00000004057.9|Fam162a|ENSMUSG00000003955.9|family with sequence similarity 162, member A
mm39_v1_chr14_-_51134906_51134914	1.20253	Hoxa4	ENSMUST00000170855.2|Klhl33|ENSMUSG00000090799.3|kelch-like 33
mm39_v1_chr2_+_83786742_83786742	1.19347	Hoxa4	ENSMUST00000178325.2|Gm13698|ENSMUSG00000094125.2|predicted gene 13698
mm39_v1_chr14_-_30213408_30213413	1.18477	Hoxa4	ENSMUST00000112250.6|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr9_+_50466127_50466150	1.15366	Hoxa4	ENSMUST00000213916.2|Il18|ENSMUSG00000039217.14|interleukin 18
mm39_v1_chr6_+_29468067_29468112	1.14536	Hoxa4	ENSMUST00000143101.4|Atp6v1f|ENSMUSG00000004285.13|ATPase, H+ transporting, lysosomal V1 subunit F	ENSMUST00000149646.3|Atp6v1f|ENSMUSG00000004285.13|ATPase, H+ transporting, lysosomal V1 subunit F
mm39_v1_chr2_-_77349909_77349991	1.14218	Hoxa4	ENSMUST00000111830.9|Zfp385b|ENSMUSG00000027016.18|zinc finger protein 385B
mm39_v1_chr8_-_85663976_85663996	1.13287	Hoxa4	ENSMUST00000109741.9|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1	ENSMUST00000119820.2|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1
mm39_v1_chr16_-_22676264_22676419	1.12716	Hoxa4	ENSMUST00000232075.2|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1	ENSMUST00000004576.8|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1
mm39_v1_chr8_-_45747883_45747901	1.11775	Hoxa4	ENSMUST00000026907.6|Klkb1|ENSMUSG00000109764.2|kallikrein B, plasma 1
mm39_v1_chr16_+_35891991_35892058	1.11079	Hoxa4	ENSMUST00000164916.9|Ccdc58|ENSMUSG00000075229.12|coiled-coil domain containing 58
mm39_v1_chr19_+_8817883_8817913	1.10339	Hoxa4	ENSMUST00000086058.13|Bscl2|ENSMUSG00000071657.13|Berardinelli-Seip congenital lipodystrophy 2 (seipin)
mm39_v1_chr17_-_43978023_43978055	1.10008	Hoxa4	ENSMUST00000233442.2|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr11_-_74228857_74228857	1.03746	Hoxa4	ENSMUST00000214490.2|Olfr410|ENSMUSG00000063116.5|olfactory receptor 410
mm39_v1_chr18_-_79152504_79152606	1.03319	Hoxa4	ENSMUST00000025430.11|Setbp1|ENSMUSG00000024548.12|SET binding protein 1
mm39_v1_chr13_+_38388904_38388938	1.02615	Hoxa4	ENSMUST00000091641.13|Snrnp48|ENSMUSG00000021431.16|small nuclear ribonucleoprotein 48 (U11/U12)	ENSMUST00000178564.2|Snrnp48|ENSMUSG00000021431.16|small nuclear ribonucleoprotein 48 (U11/U12)
mm39_v1_chr4_+_101407608_101407791	1.00102	Hoxa4	ENSMUST00000094953.11|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6	ENSMUST00000106933.2|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr10_+_127256192_127256218	1.00088	Hoxa4	ENSMUST00000171434.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr1_-_189902868_189902942	0.99196	Hoxa4	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr3_-_32546380_32546380	0.969555	Hoxa4	ENSMUST00000164954.3|Kcnmb3|ENSMUSG00000091091.3|potassium large conductance calcium-activated channel, subfamily M, beta member 3
mm39_v1_chr2_+_177969456_177969585	0.960054	Hoxa4	ENSMUST00000133267.3|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr8_-_68427217_68427248	0.959845	Hoxa4	ENSMUST00000098696.10|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000038959.16|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000093469.11|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chr14_-_36820304_36820321	0.917123	Hoxa4	ENSMUST00000022337.11|Cdhr1|ENSMUSG00000021803.11|cadherin-related family member 1
mm39_v1_chr13_-_103042294_103042318	0.913414	Hoxa4	ENSMUST00000167462.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr5_+_115373895_115373895	0.887691	Hoxa4	ENSMUST00000081497.13|Pop5|ENSMUSG00000060152.15|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm39_v1_chr11_+_21522221_21522235	0.885501	Hoxa4	ENSMUST00000131135.3|Wdpcp|ENSMUSG00000020319.10|WD repeat containing planar cell polarity effector	ENSMUST00000020568.10|Wdpcp|ENSMUSG00000020319.10|WD repeat containing planar cell polarity effector
mm39_v1_chr17_-_43978056_43978105	0.879877	Hoxa4	ENSMUST00000024705.6|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr6_+_77219698_77219712	0.871927	Hoxa4	ENSMUST00000161677.2|Lrrtm1|ENSMUSG00000060780.3|leucine rich repeat transmembrane neuronal 1
mm39_v1_chr17_+_93506590_93506601	0.868991	Hoxa4	ENSMUST00000064775.8|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr2_-_112089627_112089656	0.866581	Hoxa4	ENSMUST00000043970.2|Nutm1|ENSMUSG00000041358.2|NUT midline carcinoma, family member 1
mm39_v1_chr6_-_69521891_69521929	0.850827	Hoxa4	ENSMUST00000103356.4|Igkv4-57-1|ENSMUSG00000076555.4|immunoglobulin kappa variable 4-57-1
mm39_v1_chr2_+_111607774_111607774	0.849629	Hoxa4	ENSMUST00000214708.2|Olfr1302|ENSMUSG00000044560.4|olfactory receptor 1302	ENSMUST00000215244.2|Olfr1302|ENSMUSG00000044560.4|olfactory receptor 1302
mm39_v1_chrX_-_104918911_104919032	0.845857	Hoxa4	ENSMUST00000200471.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr6_+_29467717_29467769	0.822268	Hoxa4	ENSMUST00000004396.13|Atp6v1f|ENSMUSG00000004285.13|ATPase, H+ transporting, lysosomal V1 subunit F
mm39_v1_chr10_+_4561974_4562075	0.822241	Hoxa4	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr18_+_37440497_37440523	0.820083	Hoxa4	ENSMUST00000056712.4|Pcdhb4|ENSMUSG00000045689.4|protocadherin beta 4
mm39_v1_chr6_+_77219627_77219680	0.812667	Hoxa4	ENSMUST00000159616.2|Lrrtm1|ENSMUSG00000060780.3|leucine rich repeat transmembrane neuronal 1
mm39_v1_chr1_-_163141230_163141246	0.807525	Hoxa4	ENSMUST00000174397.3|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1	ENSMUST00000075805.13|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr17_-_46044768_46044801	0.807034	Hoxa4	ENSMUST00000178179.2|1600014C23Rik|ENSMUSG00000094690.3|RIKEN cDNA 1600014C23 gene
mm39_v1_chr1_-_67077906_67078065	0.804566	Hoxa4	ENSMUST00000119559.8|Lancl1|ENSMUSG00000026000.17|LanC (bacterial lantibiotic synthetase component C)-like 1	ENSMUST00000149996.2|Lancl1|ENSMUSG00000026000.17|LanC (bacterial lantibiotic synthetase component C)-like 1	ENSMUST00000027149.12|Lancl1|ENSMUSG00000026000.17|LanC (bacterial lantibiotic synthetase component C)-like 1	ENSMUST00000113979.10|Lancl1|ENSMUSG00000026000.17|LanC (bacterial lantibiotic synthetase component C)-like 1
mm39_v1_chr18_-_20247666_20247677	0.790518	Hoxa4	ENSMUST00000224432.2|Dsc1|ENSMUSG00000044322.8|desmocollin 1
mm39_v1_chr2_-_119377675_119377675	0.789463	Hoxa4	ENSMUST00000133668.2|Exd1|ENSMUSG00000048647.10|exonuclease 3'-5' domain containing 1
mm39_v1_chr6_+_49372463_49372569	0.787457	Hoxa4	ENSMUST00000024171.14|Stk31|ENSMUSG00000023403.15|serine threonine kinase 31	ENSMUST00000163954.8|Stk31|ENSMUSG00000023403.15|serine threonine kinase 31	ENSMUST00000172459.8|Stk31|ENSMUSG00000023403.15|serine threonine kinase 31
mm39_v1_chr7_-_136915602_136915715	0.781311	Hoxa4	ENSMUST00000210774.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr18_+_86729645_86729775	0.776618	Hoxa4	ENSMUST00000122464.8|Cbln2|ENSMUSG00000024647.15|cerebellin 2 precursor protein
mm39_v1_chr7_-_119744509_119744515	0.775781	Hoxa4	ENSMUST00000208874.2|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2	ENSMUST00000033207.6|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2
mm39_v1_chr18_+_61096597_61096651	0.770614	Hoxa4	ENSMUST00000115295.9|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr18_-_61147272_61147334	0.765114	Hoxa4	ENSMUST00000025520.10|Slc6a7|ENSMUSG00000052026.9|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
mm39_v1_chr13_-_103042554_103042619	0.764547	Hoxa4	ENSMUST00000171791.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr13_+_83672654_83672682	0.756737	Hoxa4	ENSMUST00000199019.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chrX_-_94521712_94521743	0.743935	Hoxa4	ENSMUST00000033549.3|Asb12|ENSMUSG00000031204.4|ankyrin repeat and SOCS box-containing 12
mm39_v1_chr4_+_150322151_150322162	0.737621	Hoxa4	ENSMUST00000141931.2|Eno1|ENSMUSG00000063524.14|enolase 1, alpha non-neuron
mm39_v1_chr4_+_116544509_116544526	0.736998	Hoxa4	ENSMUST00000030454.6|Prdx1|ENSMUSG00000028691.13|peroxiredoxin 1
mm39_v1_chr7_+_141276575_141276591	0.73535	Hoxa4	ENSMUST00000185406.8|Muc2|ENSMUSG00000025515.17|mucin 2
mm39_v1_chr5_+_76957812_76957856	0.73262	Hoxa4	ENSMUST00000120818.8|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin
mm39_v1_chr3_+_41519289_41519341	0.713364	Hoxa4	ENSMUST00000168086.7|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr17_+_93506435_93506459	0.712494	Hoxa4	ENSMUST00000234646.2|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1	ENSMUST00000234081.2|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr1_-_163141278_163141281	0.703985	Hoxa4	ENSMUST00000027878.14|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr12_+_38830812_38830847	0.702886	Hoxa4	ENSMUST00000160856.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr6_+_8949669_8949686	0.69999	Hoxa4	ENSMUST00000060369.4|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr16_-_85698679_85698716	0.677065	Hoxa4	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr1_-_92446141_92446141	0.673197	Hoxa4	ENSMUST00000189174.2|Olfr1414|ENSMUSG00000042849.12|olfactory receptor 1414
mm39_v1_chr12_-_84408576_84408612	0.672423	Hoxa4	ENSMUST00000021659.2|Fam161b|ENSMUSG00000021234.10|family with sequence similarity 161, member B	ENSMUST00000065536.9|Fam161b|ENSMUSG00000021234.10|family with sequence similarity 161, member B
mm39_v1_chr8_+_46984016_46984101	0.669546	Hoxa4	ENSMUST00000152423.2|Acsl1|ENSMUSG00000018796.14|acyl-CoA synthetase long-chain family member 1
mm39_v1_chr14_+_32321341_32321498	0.665438	Hoxa4	ENSMUST00000187377.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000189022.8|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000186452.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1
mm39_v1_chr13_+_83672389_83672411	0.660214	Hoxa4	ENSMUST00000200394.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr5_+_137059522_137059555	0.660052	Hoxa4	ENSMUST00000187382.2|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible
mm39_v1_chr19_-_23425757_23425768	0.656258	Hoxa4	ENSMUST00000036069.8|Mamdc2|ENSMUSG00000033207.8|MAM domain containing 2
mm39_v1_chr18_+_37433852_37433888	0.655106	Hoxa4	ENSMUST00000051754.2|Pcdhb3|ENSMUSG00000045498.2|protocadherin beta 3
mm39_v1_chr11_+_97732108_97732185	0.654731	Hoxa4	ENSMUST00000155954.3|B230217C12Rik|ENSMUSG00000050538.9|RIKEN cDNA B230217C12 gene	ENSMUST00000164364.2|B230217C12Rik|ENSMUSG00000050538.9|RIKEN cDNA B230217C12 gene	ENSMUST00000170806.2|B230217C12Rik|ENSMUSG00000050538.9|RIKEN cDNA B230217C12 gene
mm39_v1_chr13_+_58956077_58956100	0.652848	Hoxa4	ENSMUST00000109838.10|Ntrk2|ENSMUSG00000055254.16|neurotrophic tyrosine kinase, receptor, type 2
mm39_v1_chr9_-_37580478_37580531	0.650361	Hoxa4	ENSMUST00000011262.4|Panx3|ENSMUSG00000011118.5|pannexin 3
mm39_v1_chr1_+_42734051_42734105	0.643622	Hoxa4	ENSMUST00000239323.2|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3	ENSMUST00000199521.5|Gm20646|ENSMUSG00000093436.7|predicted gene 20646	ENSMUST00000176807.3|Gm20646|ENSMUSG00000093436.7|predicted gene 20646
mm39_v1_chr4_+_114678919_114678919	0.63774	Hoxa4	ENSMUST00000137570.2|Gm12830|ENSMUSG00000055198.4|predicted gene 12830
mm39_v1_chr11_-_33153587_33153612	0.629245	Hoxa4	ENSMUST00000037746.8|Tlx3|ENSMUSG00000040610.8|T cell leukemia, homeobox 3
mm39_v1_chr15_-_99717956_99718037	0.628398	Hoxa4	ENSMUST00000109024.9|Lima1|ENSMUSG00000023022.15|LIM domain and actin binding 1
mm39_v1_chr7_-_34755985_34756002	0.625262	Hoxa4	ENSMUST00000130491.3|Cebpg|ENSMUSG00000056216.10|CCAAT/enhancer binding protein (C/EBP), gamma
mm39_v1_chr19_-_38212544_38212631	0.62383	Hoxa4	ENSMUST00000067167.6|Fra10ac1|ENSMUSG00000054237.7|FRA10AC1 homolog (human)
mm39_v1_chr5_+_139529643_139529662	0.623545	Hoxa4	ENSMUST00000174792.2|Uncx|ENSMUSG00000029546.13|UNC homeobox
mm39_v1_chr7_-_121700958_121701109	0.611994	Hoxa4	ENSMUST00000139456.2|Ndufab1|ENSMUSG00000030869.12|NADH:ubiquinone oxidoreductase subunit AB1	ENSMUST00000106471.9|Ndufab1|ENSMUSG00000030869.12|NADH:ubiquinone oxidoreductase subunit AB1	ENSMUST00000123296.8|Ndufab1|ENSMUSG00000030869.12|NADH:ubiquinone oxidoreductase subunit AB1	ENSMUST00000033157.10|Ndufab1|ENSMUSG00000030869.12|NADH:ubiquinone oxidoreductase subunit AB1
mm39_v1_chr3_-_122910662_122910702	0.610253	Hoxa4	ENSMUST00000051443.8|Synpo2|ENSMUSG00000050315.15|synaptopodin 2
mm39_v1_chr11_+_108814007_108814113	0.594253	Hoxa4	ENSMUST00000106711.2|Axin2|ENSMUSG00000000142.16|axin 2
mm39_v1_chr1_-_165762469_165762605	0.591961	Hoxa4	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr8_-_68658694_68658736	0.590771	Hoxa4	ENSMUST00000212960.2|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chr16_+_10630779_10630779	0.579144	Hoxa4	ENSMUST00000115822.2|Gm11172|ENSMUSG00000079740.2|predicted gene 11172
mm39_v1_chr18_+_37622518_37622518	0.574352	Hoxa4	ENSMUST00000055949.4|Pcdhb18|ENSMUSG00000048347.6|protocadherin beta 18
mm39_v1_chr5_+_115573055_115573088	0.573933	Hoxa4	ENSMUST00000136586.6|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr5_+_137059127_137059218	0.570629	Hoxa4	ENSMUST00000041543.9|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible	ENSMUST00000186451.2|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible
mm39_v1_chr6_-_39787813_39787922	0.568297	Hoxa4	ENSMUST00000114797.2|Mrps33|ENSMUSG00000029918.10|mitochondrial ribosomal protein S33	ENSMUST00000031978.9|Mrps33|ENSMUSG00000029918.10|mitochondrial ribosomal protein S33
mm39_v1_chr19_-_57185808_57185849	0.563114	Hoxa4	ENSMUST00000111546.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr7_+_139753130_139753226	0.562375	Hoxa4	ENSMUST00000209314.3|Olfr523|ENSMUSG00000051051.8|olfactory receptor 523	ENSMUST00000213953.2|Olfr523|ENSMUSG00000051051.8|olfactory receptor 523	ENSMUST00000214272.2|Olfr523|ENSMUSG00000051051.8|olfactory receptor 523	ENSMUST00000215785.2|Olfr523|ENSMUSG00000051051.8|olfactory receptor 523	ENSMUST00000216023.2|Olfr523|ENSMUSG00000051051.8|olfactory receptor 523
mm39_v1_chr11_+_56902658_56902782	0.550379	Hoxa4	ENSMUST00000094179.11|Gria1|ENSMUSG00000020524.17|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm39_v1_chr18_-_32082624_32082689	0.543671	Hoxa4	ENSMUST00000064016.6|Gpr17|ENSMUSG00000052229.6|G protein-coupled receptor 17
mm39_v1_chr8_+_47439948_47439997	0.541533	Hoxa4	ENSMUST00000119686.2|Enpp6|ENSMUSG00000038173.16|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm39_v1_chr2_+_79538124_79538271	0.541447	Hoxa4	ENSMUST00000090760.9|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C	ENSMUST00000040863.11|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C	ENSMUST00000111780.3|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C
mm39_v1_chr3_+_93349637_93349695	0.539471	Hoxa4	ENSMUST00000064257.6|Tchh|ENSMUSG00000052415.6|trichohyalin
mm39_v1_chr1_-_144124871_144124980	0.535733	Hoxa4	ENSMUST00000189061.7|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chr1_+_93406809_93406830	0.521058	Hoxa4	ENSMUST00000112912.8|Septin2|ENSMUSG00000026276.21|septin 2
mm39_v1_chr12_+_56742413_56742459	0.520189	Hoxa4	ENSMUST00000001538.10|Pax9|ENSMUSG00000001497.19|paired box 9
mm39_v1_chr14_-_109151590_109151615	0.518952	Hoxa4	ENSMUST00000100322.4|Slitrk1|ENSMUSG00000075478.4|SLIT and NTRK-like family, member 1
mm39_v1_chr1_-_92446383_92446383	0.517024	Hoxa4	ENSMUST00000062353.12|Olfr1414|ENSMUSG00000042849.12|olfactory receptor 1414
mm39_v1_chr8_+_88978600_88978639	0.50894	Hoxa4	ENSMUST00000154115.2|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B
mm39_v1_chr12_-_31763859_31763946	0.499436	Hoxa4	ENSMUST00000057783.6|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000236002.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000174480.3|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000176710.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22
mm39_v1_chr5_-_105491795_105491795	0.490627	Hoxa4	ENSMUST00000171587.2|Gbp11|ENSMUSG00000092021.9|guanylate binding protein 11
mm39_v1_chr10_-_63926044_63926076	0.490147	Hoxa4	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chrX_+_65696608_65696638	0.488432	Hoxa4	ENSMUST00000036043.5|Slitrk2|ENSMUSG00000036790.6|SLIT and NTRK-like family, member 2
mm39_v1_chr11_+_56902624_56902653	0.48293	Hoxa4	ENSMUST00000036315.16|Gria1|ENSMUSG00000020524.17|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm39_v1_chr19_-_57185988_57186063	0.480626	Hoxa4	ENSMUST00000099294.9|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr1_-_144124787_144124806	0.477196	Hoxa4	ENSMUST00000185714.2|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chr13_+_112454981_112454992	0.467678	Hoxa4	ENSMUST00000223871.2|Ankrd55|ENSMUSG00000049985.16|ankyrin repeat domain 55
mm39_v1_chr2_-_115896279_115896334	0.467196	Hoxa4	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr17_-_84495364_84495381	0.464167	Hoxa4	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr14_-_54648057_54648131	0.459672	Hoxa4	ENSMUST00000200545.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	ENSMUST00000227967.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr1_-_5140504_5140511	0.4534	Hoxa4	ENSMUST00000147158.2|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20	ENSMUST00000118000.8|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20
mm39_v1_chr1_+_17797257_17797312	0.452863	Hoxa4	ENSMUST00000159958.8|Crispld1|ENSMUSG00000025776.14|cysteine-rich secretory protein LCCL domain containing 1	ENSMUST00000160305.8|Crispld1|ENSMUSG00000025776.14|cysteine-rich secretory protein LCCL domain containing 1	ENSMUST00000095075.5|Crispld1|ENSMUSG00000025776.14|cysteine-rich secretory protein LCCL domain containing 1
mm39_v1_chr13_+_58955506_58955515	0.449806	Hoxa4	ENSMUST00000079828.7|Ntrk2|ENSMUSG00000055254.16|neurotrophic tyrosine kinase, receptor, type 2
mm39_v1_chr13_+_22656093_22656186	0.44761	Hoxa4	ENSMUST00000226330.2|Vmn1r201|ENSMUSG00000094898.3|vomeronasal 1 receptor 201	ENSMUST00000226965.2|Vmn1r201|ENSMUSG00000094898.3|vomeronasal 1 receptor 201
mm39_v1_chr6_-_138404076_138404160	0.440536	Hoxa4	ENSMUST00000203435.3|Lmo3|ENSMUSG00000030226.13|LIM domain only 3
mm39_v1_chr9_+_7347369_7347445	0.43331	Hoxa4	ENSMUST00000005950.12|Mmp12|ENSMUSG00000049723.15|matrix metallopeptidase 12	ENSMUST00000065079.6|Mmp12|ENSMUSG00000049723.15|matrix metallopeptidase 12
mm39_v1_chr7_+_131568167_131568198	0.428762	Hoxa4	ENSMUST00000045840.5|Gpr26|ENSMUSG00000040125.5|G protein-coupled receptor 26
mm39_v1_chr18_+_61096660_61096673	0.428374	Hoxa4	ENSMUST00000039904.7|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr5_-_84565218_84565248	0.422568	Hoxa4	ENSMUST00000113401.4|Epha5|ENSMUSG00000029245.17|Eph receptor A5
mm39_v1_chr13_+_58955675_58955697	0.419547	Hoxa4	ENSMUST00000224402.2|Ntrk2|ENSMUSG00000055254.16|neurotrophic tyrosine kinase, receptor, type 2
mm39_v1_chr10_+_34265969_34265985	0.413371	Hoxa4	ENSMUST00000105511.2|Col10a1|ENSMUSG00000039462.5|collagen, type X, alpha 1
mm39_v1_chr7_+_144391786_144391821	0.411416	Hoxa4	ENSMUST00000155320.8|Fgf3|ENSMUSG00000031074.15|fibroblast growth factor 3
mm39_v1_chr3_+_94744844_94744884	0.406453	Hoxa4	ENSMUST00000107270.9|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr12_+_38830283_38830348	0.404987	Hoxa4	ENSMUST00000162563.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000161164.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160996.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr16_-_76170714_76170741	0.404152	Hoxa4	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr6_-_52190299_52190323	0.401774	Hoxa4	ENSMUST00000128102.4|Gm28308|ENSMUSG00000101298.2|predicted gene 28308
mm39_v1_chr12_+_38830081_38830116	0.40147	Hoxa4	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr18_+_65021974_65022000	0.392651	Hoxa4	ENSMUST00000225261.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr1_+_178356678_178356699	0.390737	Hoxa4	ENSMUST00000161017.8|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chr13_+_23431304_23431304	0.390417	Hoxa4	ENSMUST00000235331.2|Vmn1r223|ENSMUSG00000069280.3|vomeronasal 1 receptor 223	ENSMUST00000236495.2|Vmn1r223|ENSMUSG00000069280.3|vomeronasal 1 receptor 223	ENSMUST00000238002.2|Vmn1r223|ENSMUSG00000069280.3|vomeronasal 1 receptor 223
mm39_v1_chr6_-_77956499_77956605	0.386562	Hoxa4	ENSMUST00000159626.8|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000075340.12|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000162273.2|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2
mm39_v1_chr19_-_57185928_57185969	0.385342	Hoxa4	ENSMUST00000111544.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr19_-_57185861_57185893	0.377035	Hoxa4	ENSMUST00000111550.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr6_+_63232955_63233024	0.373599	Hoxa4	ENSMUST00000095852.5|Grid2|ENSMUSG00000071424.11|glutamate receptor, ionotropic, delta 2
mm39_v1_chr18_+_86729184_86729235	0.372646	Hoxa4	ENSMUST00000068423.10|Cbln2|ENSMUSG00000024647.15|cerebellin 2 precursor protein
mm39_v1_chrX_+_135723420_135723518	0.368501	Hoxa4	ENSMUST00000033800.13|Plp1|ENSMUSG00000031425.16|proteolipid protein (myelin) 1
mm39_v1_chr6_+_54794433_54794510	0.366986	Hoxa4	ENSMUST00000127331.2|Znrf2|ENSMUSG00000058446.15|zinc and ring finger 2
mm39_v1_chr18_+_69633741_69634029	0.364073	Hoxa4	ENSMUST00000207214.2|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201094.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000200703.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202765.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr6_+_21986445_21986595	0.35092	Hoxa4	ENSMUST00000115382.8|Cped1|ENSMUSG00000062980.16|cadherin-like and PC-esterase domain containing 1
mm39_v1_chr13_+_23317325_23317325	0.349064	Hoxa4	ENSMUST00000227050.2|Vmn1r218|ENSMUSG00000115020.2|vomeronasal 1 receptor 218	ENSMUST00000227160.2|Vmn1r218|ENSMUSG00000115020.2|vomeronasal 1 receptor 218	ENSMUST00000227741.2|Vmn1r218|ENSMUSG00000115020.2|vomeronasal 1 receptor 218	ENSMUST00000226692.2|Vmn1r218|ENSMUSG00000115020.2|vomeronasal 1 receptor 218
mm39_v1_chr5_+_124065481_124065481	0.347336	Hoxa4	ENSMUST00000166129.5|Gm43518|ENSMUSG00000105875.2|predicted gene 43518
mm39_v1_chr16_-_48232770_48232785	0.345437	Hoxa4	ENSMUST00000212197.2|Gm5485|ENSMUSG00000110573.2|predicted gene 5485
mm39_v1_chr3_+_90561560_90561609	0.337498	Hoxa4	ENSMUST00000079286.4|S100a7a|ENSMUSG00000063767.5|S100 calcium binding protein A7A
mm39_v1_chr18_+_37568647_37568679	0.331877	Hoxa4	ENSMUST00000055495.6|Pcdhb12|ENSMUSG00000043458.6|protocadherin beta 12
mm39_v1_chr12_+_29578354_29578468	0.331674	Hoxa4	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr11_-_77079794_77079794	0.327251	Hoxa4	ENSMUST00000108400.8|Efcab5|ENSMUSG00000050944.15|EF-hand calcium binding domain 5
mm39_v1_chr3_-_146487102_146487187	0.325029	Hoxa4	ENSMUST00000005164.12|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr7_+_144392323_144392354	0.322369	Hoxa4	ENSMUST00000105898.2|Fgf3|ENSMUSG00000031074.15|fibroblast growth factor 3
mm39_v1_chr12_+_65122355_65122389	0.320176	Hoxa4	ENSMUST00000058889.5|Fancm|ENSMUSG00000055884.9|Fanconi anemia, complementation group M
mm39_v1_chr12_+_55431007_55431045	0.312465	Hoxa4	ENSMUST00000163070.8|Psma6|ENSMUSG00000021024.15|proteasome subunit alpha 6
mm39_v1_chrX_+_47712614_47712666	0.309978	Hoxa4	ENSMUST00000114936.8|Slc25a14|ENSMUSG00000031105.17|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm39_v1_chrX_-_104919201_104919240	0.304244	Hoxa4	ENSMUST00000198209.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr6_-_92511836_92511868	0.300044	Hoxa4	ENSMUST00000113446.8|Prickle2|ENSMUSG00000030020.14|prickle planar cell polarity protein 2
mm39_v1_chr12_-_11258973_11258973	0.300007	Hoxa4	ENSMUST00000049877.3|Msgn1|ENSMUSG00000047002.3|mesogenin 1
mm39_v1_chr4_+_86493905_86493927	0.299431	Hoxa4	ENSMUST00000091064.8|Rraga|ENSMUSG00000070934.7|Ras-related GTP binding A
mm39_v1_chr1_-_92412835_92412835	0.298977	Hoxa4	ENSMUST00000214928.3|Olfr1416|ENSMUSG00000067064.5|olfactory receptor 1416
mm39_v1_chr1_-_158183894_158183914	0.297497	Hoxa4	ENSMUST00000004133.11|Brinp2|ENSMUSG00000004031.14|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm39_v1_chr8_+_23114035_23114059	0.297248	Hoxa4	ENSMUST00000033936.8|Dkk4|ENSMUSG00000031535.8|dickkopf WNT signaling pathway inhibitor 4
mm39_v1_chr5_-_87847268_87847286	0.295678	Hoxa4	ENSMUST00000196869.5|Csn2|ENSMUSG00000063157.10|casein beta	ENSMUST00000199624.5|Csn2|ENSMUSG00000063157.10|casein beta	ENSMUST00000198057.5|Csn2|ENSMUSG00000063157.10|casein beta	ENSMUST00000082370.10|Csn2|ENSMUSG00000063157.10|casein beta
mm39_v1_chr10_+_127337541_127337596	0.285941	Hoxa4	ENSMUST00000160019.8|Stac3|ENSMUSG00000040287.10|SH3 and cysteine rich domain 3	ENSMUST00000160610.2|Stac3|ENSMUSG00000040287.10|SH3 and cysteine rich domain 3	ENSMUST00000035839.3|Stac3|ENSMUSG00000040287.10|SH3 and cysteine rich domain 3
mm39_v1_chr1_-_92423800_92423823	0.283995	Hoxa4	ENSMUST00000204766.2|Olfr1415|ENSMUSG00000057464.5|olfactory receptor 1415	ENSMUST00000204009.3|Olfr1415|ENSMUSG00000057464.5|olfactory receptor 1415
mm39_v1_chr9_+_77543776_77543810	0.27506	Hoxa4	ENSMUST00000057781.8|Klhl31|ENSMUSG00000044938.9|kelch-like 31
mm39_v1_chr15_-_34356567_34356567	0.274889	Hoxa4	ENSMUST00000179647.2|9430069I07Rik|ENSMUSG00000094447.3|RIKEN cDNA 9430069I07 gene
mm39_v1_chr7_-_84339045_84339109	0.274886	Hoxa4	ENSMUST00000209165.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6
mm39_v1_chr19_-_28945194_28945253	0.272789	Hoxa4	ENSMUST00000162110.8|Spata6l|ENSMUSG00000064202.16|spermatogenesis associated 6 like
mm39_v1_chr8_+_47439916_47439946	0.261928	Hoxa4	ENSMUST00000039840.15|Enpp6|ENSMUSG00000038173.16|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm39_v1_chr15_-_82796308_82796390	0.256616	Hoxa4	ENSMUST00000109510.10|Tcf20|ENSMUSG00000041852.16|transcription factor 20	ENSMUST00000048966.7|Tcf20|ENSMUSG00000041852.16|transcription factor 20
mm39_v1_chr7_+_104263162_104263162	0.256192	Hoxa4	ENSMUST00000215575.3|Olfr656|ENSMUSG00000073924.6|olfactory receptor 656
mm39_v1_chr6_-_138403732_138403814	0.250185	Hoxa4	ENSMUST00000162932.2|Lmo3|ENSMUSG00000030226.13|LIM domain only 3
mm39_v1_chr2_-_111779785_111779785	0.246305	Hoxa4	ENSMUST00000099604.6|Olfr1307|ENSMUSG00000094747.4|olfactory receptor 1307
mm39_v1_chr4_-_149211145_149211220	0.244485	Hoxa4	ENSMUST00000030815.3|Cort|ENSMUSG00000028971.5|cortistatin
mm39_v1_chr14_-_70879694_70879725	0.241634	Hoxa4	ENSMUST00000227123.2|Fgf17|ENSMUSG00000022101.7|fibroblast growth factor 17	ENSMUST00000022697.7|Fgf17|ENSMUSG00000022101.7|fibroblast growth factor 17
mm39_v1_chr18_+_57605525_57605551	0.240826	Hoxa4	ENSMUST00000209786.2|Ctxn3|ENSMUSG00000069372.4|cortexin 3
mm39_v1_chr12_+_91367764_91367796	0.238784	Hoxa4	ENSMUST00000021346.14|Tshr|ENSMUSG00000020963.16|thyroid stimulating hormone receptor	ENSMUST00000021343.8|Tshr|ENSMUSG00000020963.16|thyroid stimulating hormone receptor
mm39_v1_chr14_+_65504067_65504142	0.232852	Hoxa4	ENSMUST00000224629.2|Fbxo16|ENSMUSG00000034532.10|F-box protein 16
mm39_v1_chr6_-_41749300_41749300	0.229292	Hoxa4	ENSMUST00000050412.5|Olfr459|ENSMUSG00000045479.8|olfactory receptor 459
mm39_v1_chr18_+_37952556_37952571	0.226247	Hoxa4	ENSMUST00000055935.11|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5
mm39_v1_chr2_+_37029334_37029387	0.225049	Hoxa4	ENSMUST00000214905.2|Olfr364-ps1|ENSMUSG00000078198.3|olfactory receptor 364, pseudogene 1	ENSMUST00000217298.2|Olfr364-ps1|ENSMUSG00000078198.3|olfactory receptor 364, pseudogene 1	ENSMUST00000104995.3|Olfr364-ps1|ENSMUSG00000078198.3|olfactory receptor 364, pseudogene 1
mm39_v1_chr7_+_112341233_112341268	0.224995	Hoxa4	ENSMUST00000164363.9|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr10_-_12702674_12702720	0.224043	Hoxa4	ENSMUST00000219130.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr10_+_18345706_18345729	0.223891	Hoxa4	ENSMUST00000162891.8|Nhsl1|ENSMUSG00000039835.17|NHS-like 1	ENSMUST00000100054.4|Nhsl1|ENSMUSG00000039835.17|NHS-like 1
mm39_v1_chr3_+_96552895_96552924	0.216947	Hoxa4	ENSMUST00000119365.8|Itga10|ENSMUSG00000090210.8|integrin, alpha 10	ENSMUST00000029744.6|Itga10|ENSMUSG00000090210.8|integrin, alpha 10
mm39_v1_chr1_-_110905082_110905112	0.211949	Hoxa4	ENSMUST00000094626.5|Cdh19|ENSMUSG00000047216.9|cadherin 19, type 2
mm39_v1_chr1_+_179938904_179938904	0.211155	Hoxa4	ENSMUST00000145181.2|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chrX_+_135723531_135723548	0.210587	Hoxa4	ENSMUST00000113085.2|Plp1|ENSMUSG00000031425.16|proteolipid protein (myelin) 1
mm39_v1_chr16_-_96971905_96971952	0.205968	Hoxa4	ENSMUST00000056102.9|Dscam|ENSMUSG00000050272.11|DS cell adhesion molecule
mm39_v1_chr10_-_109669053_109669082	0.204663	Hoxa4	ENSMUST00000238286.2|Nav3|ENSMUSG00000020181.19|neuron navigator 3
mm39_v1_chr17_+_20950105_20950105	0.202603	Hoxa4	ENSMUST00000233597.2|Vmn1r227|ENSMUSG00000067951.6|vomeronasal 1 receptor 227	ENSMUST00000232943.2|Vmn1r227|ENSMUSG00000067951.6|vomeronasal 1 receptor 227	ENSMUST00000179914.3|Vmn1r227|ENSMUSG00000067951.6|vomeronasal 1 receptor 227
mm39_v1_chr12_+_38831093_38831128	0.194788	Hoxa4	ENSMUST00000161513.9|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr1_+_93406686_93406783	0.192614	Hoxa4	ENSMUST00000027495.15|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000136182.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000131175.9|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000179353.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000172165.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000153826.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000129211.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000168776.8|Septin2|ENSMUSG00000116048.2|septin 2
mm39_v1_chr2_+_71359000_71359027	0.186545	Hoxa4	ENSMUST00000126400.2|Dlx1|ENSMUSG00000041911.4|distal-less homeobox 1
mm39_v1_chr1_-_69723316_69723473	0.184132	Hoxa4	ENSMUST00000190855.7|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2	ENSMUST00000188110.7|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2	ENSMUST00000191262.7|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2
mm39_v1_chr6_+_58810674_58810718	0.180924	Hoxa4	ENSMUST00000041401.11|Herc3|ENSMUSG00000029804.18|hect domain and RLD 3
mm39_v1_chr7_-_89176294_89176395	0.180382	Hoxa4	ENSMUST00000207932.2|Prss23|ENSMUSG00000039405.8|protease, serine 23
mm39_v1_chr3_-_146388165_146388277	0.180311	Hoxa4	ENSMUST00000124931.8|Samd13|ENSMUSG00000048652.13|sterile alpha motif domain containing 13	ENSMUST00000147113.2|Samd13|ENSMUSG00000048652.13|sterile alpha motif domain containing 13
mm39_v1_chr6_-_51989456_51989531	0.176596	Hoxa4	ENSMUST00000078214.8|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2	ENSMUST00000204778.3|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2
mm39_v1_chr3_-_51184895_51184996	0.173893	Hoxa4	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr11_+_73489420_73489420	0.172294	Hoxa4	ENSMUST00000214228.2|Olfr384|ENSMUSG00000060335.3|olfactory receptor 384
mm39_v1_chr11_-_70213348_70213454	0.172178	Hoxa4	ENSMUST00000019051.3|Alox12e|ENSMUSG00000018907.11|arachidonate lipoxygenase, epidermal
mm39_v1_chr6_-_145379805_145379816	0.171302	Hoxa4	ENSMUST00000149666.2|Lmntd1|ENSMUSG00000054966.14|lamin tail domain containing 1
mm39_v1_chr11_-_30936326_30936375	0.169713	Hoxa4	ENSMUST00000020553.5|Chac2|ENSMUSG00000020309.7|ChaC, cation transport regulator 2	ENSMUST00000101394.5|Chac2|ENSMUSG00000020309.7|ChaC, cation transport regulator 2
mm39_v1_chr8_+_114932312_114932411	0.166782	Hoxa4	ENSMUST00000049509.7|Vat1l|ENSMUSG00000046844.7|vesicle amine transport protein 1 like	ENSMUST00000150963.2|Vat1l|ENSMUSG00000046844.7|vesicle amine transport protein 1 like
mm39_v1_chr7_-_109330915_109330933	0.166185	Hoxa4	ENSMUST00000035372.3|Ascl3|ENSMUSG00000035951.3|achaete-scute family bHLH transcription factor 3
mm39_v1_chr4_+_133795740_133795763	0.165992	Hoxa4	ENSMUST00000121391.8|Crybg2|ENSMUSG00000012123.18|crystallin beta-gamma domain containing 2
mm39_v1_chr8_+_11608412_11608434	0.165898	Hoxa4	ENSMUST00000209565.2|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1
mm39_v1_chr1_+_53100796_53100816	0.163377	Hoxa4	ENSMUST00000027269.7|Mstn|ENSMUSG00000026100.7|myostatin	ENSMUST00000191197.2|Mstn|ENSMUSG00000026100.7|myostatin
mm39_v1_chr11_+_29413734_29413888	0.154467	Hoxa4	ENSMUST00000155854.8|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A
mm39_v1_chr11_+_49313894_49313962	0.152291	Hoxa4	ENSMUST00000216641.2|Olfr1389|ENSMUSG00000107573.3|olfactory receptor 1389	ENSMUST00000217595.2|Olfr1389|ENSMUSG00000107573.3|olfactory receptor 1389
mm39_v1_chr10_-_52071340_52071383	0.140323	Hoxa4	ENSMUST00000020045.10|Ros1|ENSMUSG00000019893.14|Ros1 proto-oncogene
mm39_v1_chr18_-_66103308_66103317	0.136151	Hoxa4	ENSMUST00000025397.7|Cplx4|ENSMUSG00000024519.7|complexin 4
mm39_v1_chr15_-_64886753_64886753	0.134937	Hoxa4	ENSMUST00000110100.3|Gm21961|ENSMUSG00000079024.3|predicted gene, 21961
mm39_v1_chr16_-_63684425_63684443	0.133244	Hoxa4	ENSMUST00000232049.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chr4_+_99184137_99184137	0.130684	Hoxa4	ENSMUST00000094955.3|Gm12689|ENSMUSG00000070891.3|predicted gene 12689
mm39_v1_chr12_-_80807454_80807502	0.127227	Hoxa4	ENSMUST00000073251.8|Ccdc177|ENSMUSG00000062961.8|coiled-coil domain containing 177
mm39_v1_chr9_-_121621544_121621573	0.125587	Hoxa4	ENSMUST00000035110.11|Hhatl|ENSMUSG00000032523.12|hedgehog acyltransferase-like
mm39_v1_chr7_+_103593644_103593644	0.12352	Hoxa4	ENSMUST00000216006.2|Olfr633|ENSMUSG00000073937.3|olfactory receptor 633
mm39_v1_chr12_-_56581823_56581891	0.1226	Hoxa4	ENSMUST00000178477.9|Nkx2-1|ENSMUSG00000001496.16|NK2 homeobox 1
mm39_v1_chr13_-_3943433_3943553	0.121879	Hoxa4	ENSMUST00000222504.2|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr10_-_70491764_70491802	0.121592	Hoxa4	ENSMUST00000162144.2|Phyhipl|ENSMUSG00000037747.10|phytanoyl-CoA hydroxylase interacting protein-like	ENSMUST00000162793.8|Phyhipl|ENSMUSG00000037747.10|phytanoyl-CoA hydroxylase interacting protein-like
mm39_v1_chr2_+_111120973_111120973	0.118228	Hoxa4	ENSMUST00000213727.2|Olfr1278|ENSMUSG00000068647.3|olfactory receptor 1278
mm39_v1_chr5_+_115567644_115567673	0.112884	Hoxa4	ENSMUST00000150779.8|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chrX_-_111608339_111608354	0.111473	Hoxa4	ENSMUST00000039887.4|Pof1b|ENSMUSG00000034607.7|premature ovarian failure 1B
mm39_v1_chr9_+_39903409_39903409	0.100484	Hoxa4	ENSMUST00000217600.2|Olfr978|ENSMUSG00000044292.5|olfactory receptor 978
mm39_v1_chr2_-_93680024_93680182	0.0938901	Hoxa4	ENSMUST00000068513.11|Accs|ENSMUSG00000040272.15|1-aminocyclopropane-1-carboxylate synthase (non-functional)	ENSMUST00000041593.15|Accs|ENSMUSG00000040272.15|1-aminocyclopropane-1-carboxylate synthase (non-functional)	ENSMUST00000130077.2|Accs|ENSMUSG00000040272.15|1-aminocyclopropane-1-carboxylate synthase (non-functional)
mm39_v1_chr18_-_42712717_42712856	0.0935581	Hoxa4	ENSMUST00000054738.5|Gpr151|ENSMUSG00000042816.5|G protein-coupled receptor 151
mm39_v1_chr5_-_137312424_137312474	0.0932781	Hoxa4	ENSMUST00000199121.2|Trip6|ENSMUSG00000023348.12|thyroid hormone receptor interactor 6
mm39_v1_chr14_-_20718337_20718422	0.0882183	Hoxa4	ENSMUST00000057090.12|Synpo2l|ENSMUSG00000039376.14|synaptopodin 2-like	ENSMUST00000117386.2|Synpo2l|ENSMUSG00000039376.14|synaptopodin 2-like
mm39_v1_chr3_-_89905547_89905696	0.0847423	Hoxa4	ENSMUST00000199740.2|Hax1|ENSMUSG00000027944.14|HCLS1 associated X-1	ENSMUST00000198782.2|Hax1|ENSMUSG00000027944.14|HCLS1 associated X-1
mm39_v1_chr17_+_75772567_75772586	0.0839542	Hoxa4	ENSMUST00000234660.2|Rasgrp3|ENSMUSG00000071042.13|RAS, guanyl releasing protein 3
mm39_v1_chr17_-_71153283_71153321	0.0838445	Hoxa4	ENSMUST00000156484.2|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr7_+_134870237_134870368	0.0822565	Hoxa4	ENSMUST00000210697.2|Nps|ENSMUSG00000073804.6|neuropeptide S	ENSMUST00000097983.5|Nps|ENSMUSG00000073804.6|neuropeptide S
mm39_v1_chr2_-_79959802_79959893	0.0757518	Hoxa4	ENSMUST00000102653.8|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent
mm39_v1_chr3_+_114874614_114874703	0.0619937	Hoxa4	ENSMUST00000051309.9|Olfm3|ENSMUSG00000027965.16|olfactomedin 3
mm39_v1_chr9_-_48876290_48876290	0.0615456	Hoxa4	ENSMUST00000008734.5|Htr3b|ENSMUSG00000008590.5|5-hydroxytryptamine (serotonin) receptor 3B
mm39_v1_chr8_+_106786190_106786265	0.0602277	Hoxa4	ENSMUST00000109308.3|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm39_v1_chr5_-_113044216_113044271	0.0492049	Hoxa4	ENSMUST00000086617.11|Myo18b|ENSMUSG00000072720.10|myosin XVIIIb
mm39_v1_chr14_+_45225641_45225672	0.041836	Hoxa4	ENSMUST00000046891.6|Ptger2|ENSMUSG00000037759.7|prostaglandin E receptor 2 (subtype EP2)
mm39_v1_chr3_-_61273228_61273372	0.0394887	Hoxa4	ENSMUST00000066298.3|B430305J03Rik|ENSMUSG00000053706.3|RIKEN cDNA B430305J03 gene
mm39_v1_chr6_+_134958681_134958681	0.0363666	Hoxa4	ENSMUST00000167323.3|Apold1|ENSMUSG00000090698.3|apolipoprotein L domain containing 1
mm39_v1_chr13_-_35100960_35101021	0.0288914	Hoxa4	ENSMUST00000225242.2|Fam217a|ENSMUSG00000021414.9|family with sequence similarity 217, member A
mm39_v1_chr18_+_37488174_37488324	0.0236702	Hoxa4	ENSMUST00000192867.2|Pcdhb8|ENSMUSG00000045876.5|protocadherin beta 8	ENSMUST00000051163.3|Pcdhb8|ENSMUSG00000045876.5|protocadherin beta 8
mm39_v1_chr14_+_65504151_65504201	0.0234889	Hoxa4	ENSMUST00000169656.3|Fbxo16|ENSMUSG00000034532.10|F-box protein 16	ENSMUST00000226005.2|Fbxo16|ENSMUSG00000034532.10|F-box protein 16
mm39_v1_chr3_-_151953894_151953912	0.0227174	Hoxa4	ENSMUST00000196529.5|Nexn|ENSMUSG00000039103.13|nexilin
mm39_v1_chr4_+_138503046_138503095	0.0188996	Hoxa4	ENSMUST00000030528.9|Pla2g2d|ENSMUSG00000041202.13|phospholipase A2, group IID
mm39_v1_chr2_-_62404195_62404419	0.0157757	Hoxa4	ENSMUST00000174234.8|Fap|ENSMUSG00000000392.18|fibroblast activation protein	ENSMUST00000000402.16|Fap|ENSMUSG00000000392.18|fibroblast activation protein	ENSMUST00000174448.8|Fap|ENSMUSG00000000392.18|fibroblast activation protein	ENSMUST00000102732.10|Fap|ENSMUSG00000000392.18|fibroblast activation protein
mm39_v1_chr10_-_52071052_52071086	0.0143903	Hoxa4	ENSMUST00000218452.2|Ros1|ENSMUSG00000019893.14|Ros1 proto-oncogene
mm39_v1_chr16_-_26810402_26810402	0.00887882	Hoxa4	ENSMUST00000231299.2|Gmnc|ENSMUSG00000068428.8|geminin coiled-coil domain containing
mm39_v1_chr2_-_109111064_109111112	0.00586935	Hoxa4	ENSMUST00000147770.2|Mettl15|ENSMUSG00000057234.10|methyltransferase like 15
mm39_v1_chrX_-_48980360_48980360	0.00141472	Hoxa4	ENSMUST00000217355.3|Olfr1322|ENSMUSG00000056281.5|olfactory receptor 1322
