mm39_v1_chr19_+_39275518_39275548	11.142	Hoxa11_Hoxc12	ENSMUST00000003137.15|Cyp2c29|ENSMUSG00000003053.18|cytochrome P450, family 2, subfamily c, polypeptide 29
mm39_v1_chr18_-_38342815_38342839	3.09982	Hoxa11_Hoxc12	ENSMUST00000057185.13|Pcdh1|ENSMUSG00000051375.16|protocadherin 1
mm39_v1_chr18_-_10706701_10706771	2.61102	Hoxa11_Hoxc12	ENSMUST00000002549.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117726.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117828.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3
mm39_v1_chr1_+_74752710_74752733	2.38574	Hoxa11_Hoxc12	ENSMUST00000027356.7|Cyp27a1|ENSMUSG00000026170.7|cytochrome P450, family 27, subfamily a, polypeptide 1
mm39_v1_chr4_-_62069046_62069100	2.36727	Hoxa11_Hoxc12	ENSMUST00000077719.4|Mup21|ENSMUSG00000066153.3|major urinary protein 21
mm39_v1_chr12_+_78273356_78273432	2.19221	Hoxa11_Hoxc12	ENSMUST00000110388.10|Gphn|ENSMUSG00000047454.13|gephyrin
mm39_v1_chr2_+_22958179_22958253	2.18546	Hoxa11_Hoxc12	ENSMUST00000227663.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000028121.15|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000227809.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000144088.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr2_-_165996716_165996779	2.05682	Hoxa11_Hoxc12	ENSMUST00000139266.2|Sulf2|ENSMUSG00000006800.15|sulfatase 2
mm39_v1_chr3_+_81904229_81904229	2.04198	Hoxa11_Hoxc12	ENSMUST00000029641.10|Asic5|ENSMUSG00000028008.11|acid-sensing (proton-gated) ion channel family member 5
mm39_v1_chr7_+_51528715_51528750	1.88457	Hoxa11_Hoxc12	ENSMUST00000051912.13|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr19_+_10160884_10160918	1.73772	Hoxa11_Hoxc12	ENSMUST00000236594.2|Fads1|ENSMUSG00000010663.6|fatty acid desaturase 1
mm39_v1_chr7_+_51528788_51528813	1.72417	Hoxa11_Hoxc12	ENSMUST00000107591.9|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr13_-_54897660_54897706	1.51173	Hoxa11_Hoxc12	ENSMUST00000135343.2|Gprin1|ENSMUSG00000069227.5|G protein-regulated inducer of neurite outgrowth 1
mm39_v1_chr6_+_149043011_149043124	1.44174	Hoxa11_Hoxc12	ENSMUST00000179873.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000047531.16|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111548.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111547.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000134306.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000147934.4|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr1_+_87998487_87998522	1.36978	Hoxa11_Hoxc12	ENSMUST00000073772.5|Ugt1a9|ENSMUSG00000090175.2|UDP glucuronosyltransferase 1 family, polypeptide A9
mm39_v1_chr16_-_57051829_57051872	1.3107	Hoxa11_Hoxc12	ENSMUST00000023431.8|Tbc1d23|ENSMUSG00000022749.9|TBC1 domain family, member 23
mm39_v1_chr19_+_4147391_4147417	1.25538	Hoxa11_Hoxc12	ENSMUST00000174514.2|Cdk2ap2|ENSMUSG00000024856.11|CDK2-associated protein 2	ENSMUST00000174149.8|Cdk2ap2|ENSMUSG00000024856.11|CDK2-associated protein 2
mm39_v1_chr9_-_106125055_106125073	1.24667	Hoxa11_Hoxc12	ENSMUST00000074082.13|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr13_-_12479804_12479842	1.22556	Hoxa11_Hoxc12	ENSMUST00000124888.8|Lgals8|ENSMUSG00000057554.14|lectin, galactose binding, soluble 8
mm39_v1_chr16_-_57051727_57051768	1.18641	Hoxa11_Hoxc12	ENSMUST00000226586.2|Tbc1d23|ENSMUSG00000022749.9|TBC1 domain family, member 23
mm39_v1_chr11_-_115518774_115518948	1.14515	Hoxa11_Hoxc12	ENSMUST00000154623.2|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	ENSMUST00000106503.10|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	ENSMUST00000141614.3|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm39_v1_chr15_+_82183143_82183165	1.11279	Hoxa11_Hoxc12	ENSMUST00000023089.5|Wbp2nl|ENSMUSG00000022455.5|WBP2 N-terminal like
mm39_v1_chr15_+_10177709_10177741	1.10899	Hoxa11_Hoxc12	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr1_-_136888118_136888234	1.0706	Hoxa11_Hoxc12	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr7_-_141014477_141014517	1.0681	Hoxa11_Hoxc12	ENSMUST00000106007.10|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000150026.2|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000202840.4|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000133206.9|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr13_-_63712140_63712140	1.05972	Hoxa11_Hoxc12	ENSMUST00000195756.6|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr6_+_149043136_149043162	1.04192	Hoxa11_Hoxc12	ENSMUST00000166416.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111551.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr9_-_71075939_71075965	1.02869	Hoxa11_Hoxc12	ENSMUST00000113570.8|Aqp9|ENSMUSG00000032204.14|aquaporin 9
mm39_v1_chr7_-_141015240_141015310	1.00348	Hoxa11_Hoxc12	ENSMUST00000138865.8|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr9_-_106124917_106124968	0.992169	Hoxa11_Hoxc12	ENSMUST00000112524.9|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1	ENSMUST00000219129.2|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr11_-_62348599_62348648	0.912158	Hoxa11_Hoxc12	ENSMUST00000127471.9|Ncor1|ENSMUSG00000018501.18|nuclear receptor co-repressor 1
mm39_v1_chr7_+_67297152_67297204	0.902824	Hoxa11_Hoxc12	ENSMUST00000032774.16|Ttc23|ENSMUSG00000030555.17|tetratricopeptide repeat domain 23	ENSMUST00000107471.8|Ttc23|ENSMUSG00000030555.17|tetratricopeptide repeat domain 23
mm39_v1_chr14_+_49409659_49409712	0.893279	Hoxa11_Hoxc12	ENSMUST00000153488.9|Naa30|ENSMUSG00000036282.16|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm39_v1_chr11_-_115518951_115518995	0.879883	Hoxa11_Hoxc12	ENSMUST00000155709.2|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	ENSMUST00000021089.11|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm39_v1_chr11_+_60370741_60370741	0.865651	Hoxa11_Hoxc12	ENSMUST00000126522.4|Myo15|ENSMUSG00000042678.18|myosin XV
mm39_v1_chr11_-_5492175_5492221	0.856102	Hoxa11_Hoxc12	ENSMUST00000020776.5|Ccdc117|ENSMUSG00000020482.5|coiled-coil domain containing 117
mm39_v1_chr11_-_115519086_115519122	0.852556	Hoxa11_Hoxc12	ENSMUST00000178003.8|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm39_v1_chr17_+_35295849_35295891	0.838603	Hoxa11_Hoxc12	ENSMUST00000172494.8|Ly6g6e|ENSMUSG00000013766.12|lymphocyte antigen 6 complex, locus G6E
mm39_v1_chr2_-_10084866_10084987	0.818207	Hoxa11_Hoxc12	ENSMUST00000130067.2|Atp5c1|ENSMUSG00000025781.15|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	ENSMUST00000139810.8|Atp5c1|ENSMUSG00000025781.15|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
mm39_v1_chr13_+_98399750_98399812	0.812717	Hoxa11_Hoxc12	ENSMUST00000022164.16|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2
mm39_v1_chr13_+_24023428_24023453	0.795017	Hoxa11_Hoxc12	ENSMUST00000091698.12|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3	ENSMUST00000110422.3|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3	ENSMUST00000166467.9|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3
mm39_v1_chr5_+_128677863_128677912	0.787355	Hoxa11_Hoxc12	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chr7_-_135130374_135130389	0.773294	Hoxa11_Hoxc12	ENSMUST00000053716.8|Clrn3|ENSMUSG00000050866.8|clarin 3
mm39_v1_chr17_-_13981703_13981863	0.761634	Hoxa11_Hoxc12	ENSMUST00000127032.8|Tcte2|ENSMUSG00000038347.16|t-complex-associated testis expressed 2
mm39_v1_chr9_-_50571080_50571107	0.749204	Hoxa11_Hoxc12	ENSMUST00000034567.4|Dlat|ENSMUSG00000000168.11|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm39_v1_chr4_+_135870808_135870808	0.745818	Hoxa11_Hoxc12	ENSMUST00000008016.3|Id3|ENSMUSG00000007872.4|inhibitor of DNA binding 3
mm39_v1_chr6_+_108190163_108190231	0.738253	Hoxa11_Hoxc12	ENSMUST00000203615.3|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chr2_+_166647426_166647525	0.729994	Hoxa11_Hoxc12	ENSMUST00000099078.10|Arfgef2|ENSMUSG00000074582.11|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm39_v1_chr3_+_79793237_79793309	0.715122	Hoxa11_Hoxc12	ENSMUST00000029567.9|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B
mm39_v1_chr14_+_27344385_27344500	0.699353	Hoxa11_Hoxc12	ENSMUST00000210135.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000090302.6|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000211087.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2
mm39_v1_chr17_+_35295894_35295907	0.69768	Hoxa11_Hoxc12	ENSMUST00000172678.8|Ly6g6e|ENSMUSG00000013766.12|lymphocyte antigen 6 complex, locus G6E
mm39_v1_chr4_-_108158242_108158303	0.697291	Hoxa11_Hoxc12	ENSMUST00000043616.7|Zyg11b|ENSMUSG00000034636.10|zyg-ll family member B, cell cycle regulator
mm39_v1_chr6_+_108190050_108190065	0.676864	Hoxa11_Hoxc12	ENSMUST00000032192.9|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chr5_+_32768515_32768589	0.675057	Hoxa11_Hoxc12	ENSMUST00000202543.4|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase	ENSMUST00000072311.13|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase
mm39_v1_chr17_+_35295909_35295927	0.667817	Hoxa11_Hoxc12	ENSMUST00000013910.5|Ly6g6e|ENSMUSG00000013766.12|lymphocyte antigen 6 complex, locus G6E
mm39_v1_chr13_+_24023386_24023425	0.658898	Hoxa11_Hoxc12	ENSMUST00000039721.14|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3
mm39_v1_chr2_+_130975417_130975417	0.594906	Hoxa11_Hoxc12	ENSMUST00000110225.2|Gm11037|ENSMUSG00000079039.2|predicted gene 11037
mm39_v1_chr17_+_8502682_8502693	0.554503	Hoxa11_Hoxc12	ENSMUST00000124023.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr12_-_101942463_101942513	0.542738	Hoxa11_Hoxc12	ENSMUST00000221422.2|Ndufb1|ENSMUSG00000113902.2|NADH:ubiquinone oxidoreductase subunit B1
mm39_v1_chr7_-_119744509_119744515	0.523814	Hoxa11_Hoxc12	ENSMUST00000208874.2|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2	ENSMUST00000033207.6|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2
mm39_v1_chr8_+_105951777_105951827	0.516108	Hoxa11_Hoxc12	ENSMUST00000034361.10|D230025D16Rik|ENSMUSG00000031889.10|RIKEN cDNA D230025D16 gene
mm39_v1_chr17_-_22064740_22064753	0.510147	Hoxa11_Hoxc12	ENSMUST00000084141.6|Zfp820|ENSMUSG00000069743.6|zinc finger protein 820	ENSMUST00000232918.2|Zfp820|ENSMUSG00000069743.6|zinc finger protein 820
mm39_v1_chr13_-_35211060_35211082	0.49806	Hoxa11_Hoxc12	ENSMUST00000170538.8|Eci2|ENSMUSG00000021417.16|enoyl-Coenzyme A delta isomerase 2	ENSMUST00000163280.8|Eci2|ENSMUSG00000021417.16|enoyl-Coenzyme A delta isomerase 2
mm39_v1_chr9_+_3403592_3403592	0.493919	Hoxa11_Hoxc12	ENSMUST00000027027.7|Cwf19l2|ENSMUSG00000025898.7|CWF19-like 2, cell cycle control (S. pombe)
mm39_v1_chr14_+_55120777_55120848	0.481189	Hoxa11_Hoxc12	ENSMUST00000022806.10|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr7_+_126248471_126248517	0.469227	Hoxa11_Hoxc12	ENSMUST00000032956.10|Sgf29|ENSMUSG00000030714.15|SAGA complex associated factor 29	ENSMUST00000126570.8|Sgf29|ENSMUSG00000030714.15|SAGA complex associated factor 29
mm39_v1_chr7_-_46445305_46445508	0.465455	Hoxa11_Hoxc12	ENSMUST00000107653.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000107654.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000014562.14|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000152759.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
mm39_v1_chr6_+_40448286_40448326	0.462776	Hoxa11_Hoxc12	ENSMUST00000114779.9|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr3_+_89084770_89084850	0.456614	Hoxa11_Hoxc12	ENSMUST00000029684.15|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000120697.8|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000098941.5|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3
mm39_v1_chr7_-_46445085_46445146	0.455625	Hoxa11_Hoxc12	ENSMUST00000123725.2|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
mm39_v1_chr17_+_22580434_22580503	0.442505	Hoxa11_Hoxc12	ENSMUST00000088765.9|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758	ENSMUST00000149699.8|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758	ENSMUST00000072477.11|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758	ENSMUST00000121315.2|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758
mm39_v1_chr6_+_40448334_40448398	0.433925	Hoxa11_Hoxc12	ENSMUST00000031971.13|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr9_+_75348800_75348857	0.430229	Hoxa11_Hoxc12	ENSMUST00000048937.6|Leo1|ENSMUSG00000042487.7|Leo1, Paf1/RNA polymerase II complex component
mm39_v1_chr13_+_98399693_98399729	0.404658	Hoxa11_Hoxc12	ENSMUST00000091356.11|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2	ENSMUST00000123924.8|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2
mm39_v1_chr4_-_138095277_138095319	0.401512	Hoxa11_Hoxc12	ENSMUST00000030535.4|Cda|ENSMUSG00000028755.4|cytidine deaminase
mm39_v1_chr9_+_108566513_108566552	0.39768	Hoxa11_Hoxc12	ENSMUST00000192344.2|Prkar2a|ENSMUSG00000032601.14|protein kinase, cAMP dependent regulatory, type II alpha
mm39_v1_chr6_+_40448400_40448460	0.364044	Hoxa11_Hoxc12	ENSMUST00000121360.8|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1	ENSMUST00000117411.8|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1	ENSMUST00000117830.2|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr1_+_178356678_178356699	0.354459	Hoxa11_Hoxc12	ENSMUST00000161017.8|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chr19_-_4062738_4062806	0.348837	Hoxa11_Hoxc12	ENSMUST00000136921.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000042497.14|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1
mm39_v1_chr19_+_29923182_29923199	0.348178	Hoxa11_Hoxc12	ENSMUST00000025724.9|Il33|ENSMUSG00000024810.17|interleukin 33
mm39_v1_chr3_+_69629318_69629404	0.347541	Hoxa11_Hoxc12	ENSMUST00000029358.15|Nmd3|ENSMUSG00000027787.15|NMD3 ribosome export adaptor
mm39_v1_chr11_+_62349238_62349295	0.347289	Hoxa11_Hoxc12	ENSMUST00000014389.6|Pigl|ENSMUSG00000014245.9|phosphatidylinositol glycan anchor biosynthesis, class L
mm39_v1_chr16_-_45229238_45229416	0.346225	Hoxa11_Hoxc12	ENSMUST00000023341.15|Cd200|ENSMUSG00000022661.15|CD200 antigen	ENSMUST00000163230.8|Cd200|ENSMUSG00000022661.15|CD200 antigen
mm39_v1_chr9_+_40785277_40785423	0.340358	Hoxa11_Hoxc12	ENSMUST00000067375.5|Bsx|ENSMUSG00000054360.5|brain specific homeobox
mm39_v1_chr10_-_120815232_120815279	0.338077	Hoxa11_Hoxc12	ENSMUST00000119944.8|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3	ENSMUST00000119093.2|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3
mm39_v1_chr2_+_20742115_20742152	0.333451	Hoxa11_Hoxc12	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr11_+_105885461_105885504	0.329803	Hoxa11_Hoxc12	ENSMUST00000190995.2|Ace3|ENSMUSG00000101605.2|angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
mm39_v1_chr11_-_62680273_62680303	0.323076	Hoxa11_Hoxc12	ENSMUST00000054654.13|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286
mm39_v1_chr3_-_88366159_88366205	0.322668	Hoxa11_Hoxc12	ENSMUST00000147200.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000169222.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr19_-_58932026_58932086	0.312291	Hoxa11_Hoxc12	ENSMUST00000237297.2|Hspa12a|ENSMUSG00000025092.8|heat shock protein 12A
mm39_v1_chr19_-_4062656_4062736	0.311026	Hoxa11_Hoxc12	ENSMUST00000134479.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000128787.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000237862.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000236203.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000133474.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1
mm39_v1_chr14_-_29443792_29443842	0.309632	Hoxa11_Hoxc12	ENSMUST00000022567.9|Cacna2d3|ENSMUSG00000021991.10|calcium channel, voltage-dependent, alpha2/delta subunit 3
mm39_v1_chr11_-_23845207_23845280	0.30827	Hoxa11_Hoxc12	ENSMUST00000102863.3|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma	ENSMUST00000020513.10|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma
mm39_v1_chr7_-_85974838_85974838	0.306238	Hoxa11_Hoxc12	ENSMUST00000214977.2|Olfr308|ENSMUSG00000054498.7|olfactory receptor 308
mm39_v1_chr11_-_62680228_62680269	0.302185	Hoxa11_Hoxc12	ENSMUST00000207597.2|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286	ENSMUST00000108705.8|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286
mm39_v1_chr14_+_65595838_65595991	0.300311	Hoxa11_Hoxc12	ENSMUST00000224623.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr17_-_65946817_65946834	0.296338	Hoxa11_Hoxc12	ENSMUST00000233702.2|Txndc2|ENSMUSG00000050612.7|thioredoxin domain containing 2 (spermatozoa)
mm39_v1_chr11_+_59197746_59197761	0.290903	Hoxa11_Hoxc12	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr11_-_4391082_4391105	0.282706	Hoxa11_Hoxc12	ENSMUST00000109949.8|Hormad2|ENSMUSG00000020419.12|HORMA domain containing 2	ENSMUST00000130174.2|Hormad2|ENSMUSG00000020419.12|HORMA domain containing 2
mm39_v1_chr15_+_100321074_100321074	0.280748	Hoxa11_Hoxc12	ENSMUST00000148928.2|Gm5475|ENSMUSG00000087444.2|predicted gene 5475
mm39_v1_chr14_+_55120875_55120972	0.26775	Hoxa11_Hoxc12	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr6_-_52217821_52217834	0.261224	Hoxa11_Hoxc12	ENSMUST00000121043.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr8_+_104977551_104977573	0.249282	Hoxa11_Hoxc12	ENSMUST00000098464.6|Cklf|ENSMUSG00000054400.17|chemokine-like factor
mm39_v1_chr18_-_46413886_46413908	0.24905	Hoxa11_Hoxc12	ENSMUST00000236999.2|Pggt1b|ENSMUSG00000024477.5|protein geranylgeranyltransferase type I, beta subunit
mm39_v1_chr19_+_58748132_58748177	0.245051	Hoxa11_Hoxc12	ENSMUST00000026081.5|Pnliprp2|ENSMUSG00000025091.5|pancreatic lipase-related protein 2
mm39_v1_chr2_-_120801186_120801242	0.243653	Hoxa11_Hoxc12	ENSMUST00000028728.6|Ubr1|ENSMUSG00000027272.6|ubiquitin protein ligase E3 component n-recognin 1
mm39_v1_chr2_+_74542255_74542283	0.243267	Hoxa11_Hoxc12	ENSMUST00000111983.9|Hoxd3|ENSMUSG00000079277.10|homeobox D3
mm39_v1_chr2_+_83642910_83642987	0.235379	Hoxa11_Hoxc12	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr15_+_37425798_37425798	0.228654	Hoxa11_Hoxc12	ENSMUST00000022897.2|4930447A16Rik|ENSMUSG00000022288.2|RIKEN cDNA 4930447A16 gene
mm39_v1_chr15_-_101336669_101336685	0.227125	Hoxa11_Hoxc12	ENSMUST00000081945.5|Krt87|ENSMUSG00000047641.9|keratin 87
mm39_v1_chr7_+_43284131_43284165	0.225463	Hoxa11_Hoxc12	ENSMUST00000032663.10|Ceacam18|ENSMUSG00000030472.10|carcinoembryonic antigen-related cell adhesion molecule 18
mm39_v1_chr13_+_98399582_98399686	0.221749	Hoxa11_Hoxc12	ENSMUST00000150352.3|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2	ENSMUST00000226100.2|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2	ENSMUST00000150916.9|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2
mm39_v1_chr6_+_42263644_42263790	0.21905	Hoxa11_Hoxc12	ENSMUST00000163936.8|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1
mm39_v1_chr11_-_102588536_102588608	0.217993	Hoxa11_Hoxc12	ENSMUST00000164506.3|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43	ENSMUST00000092569.13|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43
mm39_v1_chr9_-_110775143_110775226	0.217858	Hoxa11_Hoxc12	ENSMUST00000199782.2|Tdgf1|ENSMUSG00000032494.13|teratocarcinoma-derived growth factor 1	ENSMUST00000035075.13|Tdgf1|ENSMUSG00000032494.13|teratocarcinoma-derived growth factor 1
mm39_v1_chr14_+_55909816_55909840	0.21552	Hoxa11_Hoxc12	ENSMUST00000227178.2|Gmpr2|ENSMUSG00000002326.7|guanosine monophosphate reductase 2	ENSMUST00000227914.2|Gmpr2|ENSMUSG00000002326.7|guanosine monophosphate reductase 2
mm39_v1_chr8_+_84016970_84016987	0.211799	Hoxa11_Hoxc12	ENSMUST00000034146.5|Ucp1|ENSMUSG00000031710.5|uncoupling protein 1 (mitochondrial, proton carrier)
mm39_v1_chr6_+_42263609_42263627	0.211709	Hoxa11_Hoxc12	ENSMUST00000238845.2|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1	ENSMUST00000031894.13|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1
mm39_v1_chr6_+_29471436_29471496	0.210558	Hoxa11_Hoxc12	ENSMUST00000171317.2|Atp6v1fnb|ENSMUSG00000090685.2|Atp6v1f neighbor
mm39_v1_chr1_+_161222980_161223013	0.209414	Hoxa11_Hoxc12	ENSMUST00000028024.5|Tnfsf4|ENSMUSG00000026700.5|tumor necrosis factor (ligand) superfamily, member 4
mm39_v1_chr14_-_55909314_55909378	0.203637	Hoxa11_Hoxc12	ENSMUST00000163750.8|Nedd8|ENSMUSG00000010376.16|neural precursor cell expressed, developmentally down-regulated gene 8
mm39_v1_chr1_+_182236728_182236750	0.202306	Hoxa11_Hoxc12	ENSMUST00000117245.2|Trp53bp2|ENSMUSG00000026510.11|transformation related protein 53 binding protein 2
mm39_v1_chr16_-_16418397_16418439	0.199955	Hoxa11_Hoxc12	ENSMUST00000159542.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr7_+_28240262_28240340	0.19697	Hoxa11_Hoxc12	ENSMUST00000119180.4|Sycn|ENSMUSG00000084174.4|syncollin
mm39_v1_chr11_-_58446443_58446462	0.190724	Hoxa11_Hoxc12	ENSMUST00000216725.2|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328	ENSMUST00000215717.2|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328	ENSMUST00000108824.3|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328
mm39_v1_chr11_-_4390745_4390745	0.189117	Hoxa11_Hoxc12	ENSMUST00000109948.8|Hormad2|ENSMUSG00000020419.12|HORMA domain containing 2
mm39_v1_chr7_-_104677667_104677667	0.185838	Hoxa11_Hoxc12	ENSMUST00000215899.2|Olfr675|ENSMUSG00000096773.5|olfactory receptor 675	ENSMUST00000214318.3|Olfr675|ENSMUSG00000096773.5|olfactory receptor 675
mm39_v1_chr6_+_91855015_91855078	0.182758	Hoxa11_Hoxc12	ENSMUST00000037783.7|Ccdc174|ENSMUSG00000034083.17|coiled-coil domain containing 174
mm39_v1_chr14_-_55909527_55909581	0.177073	Hoxa11_Hoxc12	ENSMUST00000010520.10|Nedd8|ENSMUSG00000010376.16|neural precursor cell expressed, developmentally down-regulated gene 8
mm39_v1_chr13_-_63712349_63712349	0.172391	Hoxa11_Hoxc12	ENSMUST00000192155.6|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr14_+_55909692_55909755	0.170011	Hoxa11_Hoxc12	ENSMUST00000002397.7|Gmpr2|ENSMUSG00000002326.7|guanosine monophosphate reductase 2
mm39_v1_chr6_-_52195663_52195696	0.168317	Hoxa11_Hoxc12	ENSMUST00000134367.4|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr8_+_34143266_34143266	0.167357	Hoxa11_Hoxc12	ENSMUST00000033992.9|Gsr|ENSMUSG00000031584.17|glutathione reductase
mm39_v1_chr15_+_6552270_6552346	0.162936	Hoxa11_Hoxc12	ENSMUST00000226412.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr7_-_41098120_41098120	0.156961	Hoxa11_Hoxc12	ENSMUST00000233793.2|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57	ENSMUST00000233555.2|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57	ENSMUST00000165029.3|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57
mm39_v1_chrX_+_94965996_94965996	0.156371	Hoxa11_Hoxc12	ENSMUST00000127461.3|Zc3h12b|ENSMUSG00000035045.18|zinc finger CCCH-type containing 12B
mm39_v1_chr4_-_118549953_118549953	0.151646	Hoxa11_Hoxc12	ENSMUST00000216226.2|Olfr1342|ENSMUSG00000043383.6|olfactory receptor 1342
mm39_v1_chr12_-_101943134_101943323	0.150296	Hoxa11_Hoxc12	ENSMUST00000221227.2|Ndufb1|ENSMUSG00000113902.2|NADH:ubiquinone oxidoreductase subunit B1
mm39_v1_chr2_-_36752671_36752672	0.146956	Hoxa11_Hoxc12	ENSMUST00000213676.2|Olfr351|ENSMUSG00000075383.5|olfactory receptor 351	ENSMUST00000215137.2|Olfr351|ENSMUSG00000075383.5|olfactory receptor 351
mm39_v1_chr19_-_13075176_13075255	0.140839	Hoxa11_Hoxc12	ENSMUST00000208913.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457	ENSMUST00000215229.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr7_+_139827152_139827294	0.139038	Hoxa11_Hoxc12	ENSMUST00000164583.8|Scart2|ENSMUSG00000054672.14|scavenger receptor family member expressed on T cells 2	ENSMUST00000093984.3|Scart2|ENSMUSG00000054672.14|scavenger receptor family member expressed on T cells 2
mm39_v1_chr10_+_93390740_93390748	0.138577	Hoxa11_Hoxc12	ENSMUST00000132214.8|Ccdc38|ENSMUSG00000036168.16|coiled-coil domain containing 38
mm39_v1_chr1_+_171330978_171331046	0.135323	Hoxa11_Hoxc12	ENSMUST00000081527.2|Alyref2|ENSMUSG00000060244.2|Aly/REF export factor 2
mm39_v1_chr17_+_8502594_8502661	0.132554	Hoxa11_Hoxc12	ENSMUST00000155364.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1	ENSMUST00000046754.15|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr7_+_92729067_92729078	0.132136	Hoxa11_Hoxc12	ENSMUST00000051179.12|Fam181b|ENSMUSG00000051515.12|family with sequence similarity 181, member B
mm39_v1_chr5_+_64387742_64387792	0.127217	Hoxa11_Hoxc12	ENSMUST00000119756.6|Tbc1d1|ENSMUSG00000029174.19|TBC1 domain family, member 1
mm39_v1_chr19_+_58931847_58931873	0.126596	Hoxa11_Hoxc12	ENSMUST00000054280.10|Eno4|ENSMUSG00000048029.11|enolase 4	ENSMUST00000200910.4|Eno4|ENSMUSG00000048029.11|enolase 4
mm39_v1_chr3_+_129326004_129326089	0.124154	Hoxa11_Hoxc12	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr17_+_34636321_34636398	0.120087	Hoxa11_Hoxc12	ENSMUST00000142317.8|BC051142|ENSMUSG00000057246.17|cDNA sequence BC051142
mm39_v1_chr15_-_43733389_43733456	0.115457	Hoxa11_Hoxc12	ENSMUST00000067469.6|Tmem74|ENSMUSG00000054409.6|transmembrane protein 74
mm39_v1_chr18_+_65276629_65276673	0.114531	Hoxa11_Hoxc12	ENSMUST00000235310.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr8_-_15096046_15096092	0.113325	Hoxa11_Hoxc12	ENSMUST00000050493.4|BB014433|ENSMUSG00000049008.5|expressed sequence BB014433	ENSMUST00000123331.2|BB014433|ENSMUSG00000049008.5|expressed sequence BB014433
mm39_v1_chr5_-_123804745_123804758	0.108733	Hoxa11_Hoxc12	ENSMUST00000149410.2|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chr12_+_75355082_75355096	0.106668	Hoxa11_Hoxc12	ENSMUST00000118602.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000118966.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000055390.6|Rhoj|ENSMUSG00000046768.14|ras homolog family member J
mm39_v1_chr2_-_146927365_146927406	0.106382	Hoxa11_Hoxc12	ENSMUST00000067020.3|Nkx2-4|ENSMUSG00000054160.3|NK2 homeobox 4
mm39_v1_chr9_+_38026494_38026494	0.103137	Hoxa11_Hoxc12	ENSMUST00000217286.2|Olfr889|ENSMUSG00000096356.4|olfactory receptor 889
mm39_v1_chr2_-_26406631_26406675	0.0958244	Hoxa11_Hoxc12	ENSMUST00000132820.2|Notch1|ENSMUSG00000026923.16|notch 1
mm39_v1_chrX_+_72108393_72108393	0.0956995	Hoxa11_Hoxc12	ENSMUST00000060418.8|Pnma3|ENSMUSG00000046287.8|paraneoplastic antigen MA3
mm39_v1_chr5_-_90487583_90487617	0.0944191	Hoxa11_Hoxc12	ENSMUST00000197021.2|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17
mm39_v1_chr6_-_89853395_89853395	0.0906324	Hoxa11_Hoxc12	ENSMUST00000227279.2|Vmn1r42|ENSMUSG00000068232.4|vomeronasal 1 receptor 42	ENSMUST00000228709.2|Vmn1r43|ENSMUSG00000068231.6|vomeronasal 1 receptor 43	ENSMUST00000226983.2|Vmn1r43|ENSMUSG00000068231.6|vomeronasal 1 receptor 43
mm39_v1_chr11_-_99987051_99987068	0.0901937	Hoxa11_Hoxc12	ENSMUST00000103127.4|Krt35|ENSMUSG00000048013.10|keratin 35
mm39_v1_chr1_-_63153675_63153826	0.0873414	Hoxa11_Hoxc12	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr15_-_101759212_101759229	0.0855367	Hoxa11_Hoxc12	ENSMUST00000023790.5|Krt1|ENSMUSG00000046834.8|keratin 1
mm39_v1_chr4_+_39450265_39450332	0.0840227	Hoxa11_Hoxc12	ENSMUST00000029955.5|1700009N14Rik|ENSMUSG00000028287.5|RIKEN cDNA 1700009N14 gene
mm39_v1_chr3_+_126391046_126391076	0.0834078	Hoxa11_Hoxc12	ENSMUST00000106401.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr13_+_49646794_49646794	0.0829977	Hoxa11_Hoxc12	ENSMUST00000222404.2|Tes3-ps|ENSMUSG00000113255.2|testis derived transcript 3, pseudogene
mm39_v1_chr1_-_74163575_74163626	0.0798481	Hoxa11_Hoxc12	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr11_-_65050716_65050717	0.072993	Hoxa11_Hoxc12	ENSMUST00000020855.5|1700086D15Rik|ENSMUSG00000020548.11|RIKEN cDNA 1700086D15 gene	ENSMUST00000108696.7|1700086D15Rik|ENSMUSG00000020548.11|RIKEN cDNA 1700086D15 gene
mm39_v1_chr3_+_32490525_32490525	0.0680257	Hoxa11_Hoxc12	ENSMUST00000108242.2|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr13_-_22403990_22403990	0.0665133	Hoxa11_Hoxc12	ENSMUST00000057516.2|Vmn1r193|ENSMUSG00000046932.3|vomeronasal 1 receptor 193
mm39_v1_chr14_+_54440591_54440591	0.062488	Hoxa11_Hoxc12	ENSMUST00000103725.2|Traj16|ENSMUSG00000076913.2|T cell receptor alpha joining 16
mm39_v1_chrX_+_132809189_132809213	0.0521978	Hoxa11_Hoxc12	ENSMUST00000113304.2|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr2_+_111327525_111327525	0.0508809	Hoxa11_Hoxc12	ENSMUST00000121345.4|Olfr1291-ps1|ENSMUSG00000108891.5|olfactory receptor 1291, pseudogene 1
mm39_v1_chr6_-_118432436_118432489	0.0482629	Hoxa11_Hoxc12	ENSMUST00000161519.8|Zfp248|ENSMUSG00000030145.15|zinc finger protein 248	ENSMUST00000069292.14|Zfp248|ENSMUSG00000030145.15|zinc finger protein 248
mm39_v1_chr9_+_38119661_38119661	0.0481604	Hoxa11_Hoxc12	ENSMUST00000211975.3|Olfr893|ENSMUSG00000093901.4|olfactory receptor 893
mm39_v1_chr3_+_126390951_126390964	0.043801	Hoxa11_Hoxc12	ENSMUST00000171289.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr2_-_88913831_88913857	0.04134	Hoxa11_Hoxc12	ENSMUST00000217421.2|Olfr1219|ENSMUSG00000075104.4|olfactory receptor 1219	ENSMUST00000214442.2|Olfr1219|ENSMUSG00000075104.4|olfactory receptor 1219	ENSMUST00000215225.3|Olfr1219|ENSMUSG00000075104.4|olfactory receptor 1219
mm39_v1_chr16_+_87151073_87151137	0.0351534	Hoxa11_Hoxc12	ENSMUST00000054442.11|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)	ENSMUST00000118310.8|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)	ENSMUST00000120284.8|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)	ENSMUST00000118115.2|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm39_v1_chr4_+_109092829_109092829	0.0348443	Hoxa11_Hoxc12	ENSMUST00000030285.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chrX_-_163787825_163787825	0.0325668	Hoxa11_Hoxc12	ENSMUST00000114890.3|Gm17604|ENSMUSG00000079600.3|predicted gene, 17604
mm39_v1_chr6_+_96092230_96092292	0.0313824	Hoxa11_Hoxc12	ENSMUST00000075080.6|Tafa1|ENSMUSG00000059187.13|TAFA chemokine like family member 1
mm39_v1_chr2_+_23097482_23097509	0.0279004	Hoxa11_Hoxc12	ENSMUST00000028113.10|Potegl|ENSMUSG00000026774.12|POTE ankyrin domain family, member G like	ENSMUST00000114505.2|Potegl|ENSMUSG00000026774.12|POTE ankyrin domain family, member G like
mm39_v1_chr16_-_26808724_26808724	0.0275723	Hoxa11_Hoxc12	ENSMUST00000089832.6|Gmnc|ENSMUSG00000068428.8|geminin coiled-coil domain containing
mm39_v1_chr8_+_104977575_104977587	0.0275478	Hoxa11_Hoxc12	ENSMUST00000212939.2|Cklf|ENSMUSG00000054400.17|chemokine-like factor
mm39_v1_chr8_+_11890474_11890532	0.0274467	Hoxa11_Hoxc12	ENSMUST00000033909.14|Tex29|ENSMUSG00000031512.16|testis expressed 29	ENSMUST00000209692.2|Tex29|ENSMUSG00000031512.16|testis expressed 29
mm39_v1_chr5_-_21156766_21156824	0.0213508	Hoxa11_Hoxc12	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr6_-_145379805_145379816	0.019459	Hoxa11_Hoxc12	ENSMUST00000149666.2|Lmntd1|ENSMUSG00000054966.14|lamin tail domain containing 1
mm39_v1_chr13_-_19917092_19917125	0.0142649	Hoxa11_Hoxc12	ENSMUST00000151029.3|Gpr141b|ENSMUSG00000047462.10|G protein-coupled receptor 141B
mm39_v1_chr11_-_94398162_94398181	0.0135485	Hoxa11_Hoxc12	ENSMUST00000040692.9|Mycbpap|ENSMUSG00000039110.16|MYCBP associated protein
mm39_v1_chr18_+_36877709_36877813	0.013479	Hoxa11_Hoxc12	ENSMUST00000007042.6|Ik|ENSMUSG00000024474.8|IK cytokine	ENSMUST00000237095.2|Ik|ENSMUSG00000024474.8|IK cytokine
mm39_v1_chr3_-_144555062_144555118	0.0127024	Hoxa11_Hoxc12	ENSMUST00000159989.2|Clca3b|ENSMUSG00000037033.10|chloride channel accessory 3B
mm39_v1_chr11_+_55104609_55104640	0.0106385	Hoxa11_Hoxc12	ENSMUST00000108867.2|Slc36a1|ENSMUSG00000020261.16|solute carrier family 36 (proton/amino acid symporter), member 1
mm39_v1_chr11_+_81936531_81936547	0.00927284	Hoxa11_Hoxc12	ENSMUST00000021011.3|Ccl7|ENSMUSG00000035373.3|chemokine (C-C motif) ligand 7
mm39_v1_chr4_-_150087587_150087607	0.00917418	Hoxa11_Hoxc12	ENSMUST00000084117.13|H6pd|ENSMUSG00000028980.15|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm39_v1_chr6_-_68784692_68784743	0.00689901	Hoxa11_Hoxc12	ENSMUST00000103334.4|Igkv4-90|ENSMUSG00000076533.4|immunoglobulin kappa chain variable 4-90
mm39_v1_chr11_+_115294560_115294603	0.00140444	Hoxa11_Hoxc12	ENSMUST00000153983.8|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000106539.10|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000103036.5|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58
mm39_v1_chrX_-_48823936_48823936	0.000856619	Hoxa11_Hoxc12	ENSMUST00000215373.3|Olfr1321|ENSMUSG00000067971.6|olfactory receptor 1321
