mm39_v1_chr8_-_118400418_118400440	3.40558	Hoxa1	ENSMUST00000173522.8|Sdr42e1|ENSMUSG00000034308.14|short chain dehydrogenase/reductase family 42E, member 1	ENSMUST00000174450.2|Sdr42e1|ENSMUSG00000034308.14|short chain dehydrogenase/reductase family 42E, member 1
mm39_v1_chr19_-_7943365_7943401	3.3079	Hoxa1	ENSMUST00000182102.8|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27	ENSMUST00000075619.5|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27
mm39_v1_chr13_-_12355604_12355641	2.3071	Hoxa1	ENSMUST00000168193.8|Actn2|ENSMUSG00000052374.17|actinin alpha 2	ENSMUST00000064204.14|Actn2|ENSMUSG00000052374.17|actinin alpha 2
mm39_v1_chr16_+_38722666_38722678	1.84245	Hoxa1	ENSMUST00000023478.8|Igsf11|ENSMUSG00000022790.15|immunoglobulin superfamily, member 11
mm39_v1_chr16_-_10360893_10360928	1.7202	Hoxa1	ENSMUST00000184863.8|Dexi|ENSMUSG00000038055.13|dexamethasone-induced transcript	ENSMUST00000038281.6|Dexi|ENSMUSG00000038055.13|dexamethasone-induced transcript
mm39_v1_chr2_-_103315483_103315505	1.50651	Hoxa1	ENSMUST00000028610.10|Cat|ENSMUSG00000027187.11|catalase
mm39_v1_chr18_-_56695288_56695325	1.23896	Hoxa1	ENSMUST00000170309.8|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1
mm39_v1_chr18_-_56695333_56695400	1.18364	Hoxa1	ENSMUST00000066208.13|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1	ENSMUST00000172734.8|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1
mm39_v1_chr6_-_21851827_21852182	1.1815	Hoxa1	ENSMUST00000202353.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000134635.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000123116.8|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000120965.8|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000143531.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12
mm39_v1_chr18_-_56695259_56695283	1.17534	Hoxa1	ENSMUST00000171844.3|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1
mm39_v1_chr6_-_136852792_136852821	0.933407	Hoxa1	ENSMUST00000032342.3|Mgp|ENSMUSG00000030218.3|matrix Gla protein
mm39_v1_chr10_-_125225298_125225422	0.901886	Hoxa1	ENSMUST00000210780.2|Slc16a7|ENSMUSG00000020102.16|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm39_v1_chr15_+_9140614_9140664	0.894065	Hoxa1	ENSMUST00000227556.3|Lmbrd2|ENSMUSG00000039704.9|LMBR1 domain containing 2
mm39_v1_chr11_+_86375441_86375543	0.812243	Hoxa1	ENSMUST00000020827.7|Rnft1|ENSMUSG00000020521.8|ring finger protein, transmembrane 1
mm39_v1_chr19_-_47452557_47452686	0.77422	Hoxa1	ENSMUST00000111800.4|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr16_+_22926162_22926229	0.75739	Hoxa1	ENSMUST00000023599.13|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000168891.8|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2
mm39_v1_chr2_+_152804405_152804430	0.749407	Hoxa1	ENSMUST00000099197.9|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9	ENSMUST00000103155.10|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9
mm39_v1_chr6_-_83654789_83654839	0.747405	Hoxa1	ENSMUST00000037882.8|Cd207|ENSMUSG00000034783.8|CD207 antigen
mm39_v1_chr13_+_41040657_41040675	0.640649	Hoxa1	ENSMUST00000069958.15|Gcnt2|ENSMUSG00000021360.17|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm39_v1_chr14_+_70314652_70314671	0.639824	Hoxa1	ENSMUST00000035908.3|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr6_-_93889483_93889495	0.600515	Hoxa1	ENSMUST00000205116.3|Magi1|ENSMUSG00000045095.17|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm39_v1_chr17_-_25300112_25300175	0.591394	Hoxa1	ENSMUST00000024984.7|Tmem204|ENSMUSG00000024168.9|transmembrane protein 204
mm39_v1_chr4_+_43669266_43669329	0.551122	Hoxa1	ENSMUST00000107864.8|Tmem8b|ENSMUSG00000078716.11|transmembrane protein 8B
mm39_v1_chr19_-_3625698_3625756	0.547392	Hoxa1	ENSMUST00000172362.3|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000025846.16|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000226109.2|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000113997.9|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3
mm39_v1_chr2_-_104324035_104324098	0.529081	Hoxa1	ENSMUST00000111124.8|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr15_-_53209513_53209565	0.521567	Hoxa1	ENSMUST00000077273.9|Ext1|ENSMUSG00000061731.10|exostosin glycosyltransferase 1
mm39_v1_chr1_+_153750081_153750100	0.496354	Hoxa1	ENSMUST00000055314.4|Teddm1b|ENSMUSG00000043282.4|transmembrane epididymal protein 1B
mm39_v1_chr5_+_42225303_42225303	0.492565	Hoxa1	ENSMUST00000087332.5|Gm16223|ENSMUSG00000067285.5|predicted gene 16223
mm39_v1_chr1_-_157240138_157240191	0.488115	Hoxa1	ENSMUST00000078308.13|Rasal2|ENSMUSG00000070565.12|RAS protein activator like 2
mm39_v1_chr11_+_4833186_4833222	0.482487	Hoxa1	ENSMUST00000139737.2|Nipsnap1|ENSMUSG00000034285.16|nipsnap homolog 1
mm39_v1_chr7_-_103320398_103320398	0.442598	Hoxa1	ENSMUST00000062144.4|Olfr624|ENSMUSG00000045780.4|olfactory receptor 624
mm39_v1_chr4_-_145041710_145041739	0.422767	Hoxa1	ENSMUST00000030339.13|Tnfrsf8|ENSMUSG00000028602.13|tumor necrosis factor receptor superfamily, member 8
mm39_v1_chr11_-_118460736_118460827	0.413498	Hoxa1	ENSMUST00000136551.3|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3
mm39_v1_chr2_+_180829040_180829141	0.412636	Hoxa1	ENSMUST00000016488.13|Ppdpf|ENSMUSG00000016344.15|pancreatic progenitor cell differentiation and proliferation factor	ENSMUST00000108841.2|Ppdpf|ENSMUSG00000016344.15|pancreatic progenitor cell differentiation and proliferation factor
mm39_v1_chr3_-_58433313_58433318	0.405327	Hoxa1	ENSMUST00000029385.9|Serp1|ENSMUSG00000027808.9|stress-associated endoplasmic reticulum protein 1
mm39_v1_chr1_-_43866910_43866960	0.391398	Hoxa1	ENSMUST00000153317.6|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000128261.2|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000126008.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000139451.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1
mm39_v1_chr4_-_143026068_143026134	0.379894	Hoxa1	ENSMUST00000030317.14|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chr6_+_95094721_95094938	0.369368	Hoxa1	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chrX_+_109857866_109857886	0.358942	Hoxa1	ENSMUST00000078229.5|Pou3f4|ENSMUSG00000056854.5|POU domain, class 3, transcription factor 4
mm39_v1_chr7_+_123061535_123061552	0.356353	Hoxa1	ENSMUST00000098056.6|Aqp8|ENSMUSG00000030762.12|aquaporin 8
mm39_v1_chr10_-_33500583_33500765	0.348242	Hoxa1	ENSMUST00000161692.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000160299.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000019920.13|Clvs2|ENSMUSG00000019785.15|clavesin 2
mm39_v1_chr5_-_138981842_138981878	0.335326	Hoxa1	ENSMUST00000110897.8|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha
mm39_v1_chr11_-_40646090_40646138	0.330777	Hoxa1	ENSMUST00000020576.8|Ccng1|ENSMUSG00000020326.8|cyclin G1
mm39_v1_chr5_+_88731386_88731449	0.32447	Hoxa1	ENSMUST00000031229.11|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr4_-_148021159_148021191	0.312925	Hoxa1	ENSMUST00000105712.2|Plod1|ENSMUSG00000019055.16|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm39_v1_chr9_+_121727421_121727490	0.306654	Hoxa1	ENSMUST00000214340.2|Ackr2|ENSMUSG00000044534.9|atypical chemokine receptor 2	ENSMUST00000050327.5|Ackr2|ENSMUSG00000044534.9|atypical chemokine receptor 2
mm39_v1_chr15_-_95426419_95426523	0.304041	Hoxa1	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr9_+_78303059_78303128	0.303956	Hoxa1	ENSMUST00000113367.2|Ddx43|ENSMUSG00000070291.5|DEAD box helicase 43
mm39_v1_chr17_+_26036893_26037033	0.302965	Hoxa1	ENSMUST00000235694.2|Fbxl16|ENSMUSG00000025738.9|F-box and leucine-rich repeat protein 16
mm39_v1_chr17_-_90763300_90763454	0.287996	Hoxa1	ENSMUST00000159778.8|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000174337.8|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000172466.8|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr15_+_89095724_89095823	0.279848	Hoxa1	ENSMUST00000227951.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000226221.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000238818.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000228284.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2
mm39_v1_chr3_+_97920819_97920863	0.279508	Hoxa1	ENSMUST00000079812.8|Notch2|ENSMUSG00000027878.12|notch 2
mm39_v1_chr5_+_88731366_88731382	0.278502	Hoxa1	ENSMUST00000199312.5|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr18_+_37108994_37108994	0.264311	Hoxa1	ENSMUST00000193984.2|Gm37388|ENSMUSG00000103125.2|predicted gene, 37388
mm39_v1_chr2_+_158217558_158217641	0.256184	Hoxa1	ENSMUST00000109488.8|Snhg11|ENSMUSG00000044349.17|small nucleolar RNA host gene 11
mm39_v1_chr2_-_63014622_63014681	0.254328	Hoxa1	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr1_+_74700952_74701001	0.253329	Hoxa1	ENSMUST00000129890.8|Ttll4|ENSMUSG00000033257.15|tubulin tyrosine ligase-like family, member 4
mm39_v1_chr3_-_7678785_7678792	0.251334	Hoxa1	ENSMUST00000194279.6|Il7|ENSMUSG00000040329.15|interleukin 7
mm39_v1_chr5_+_137059522_137059555	0.2511	Hoxa1	ENSMUST00000187382.2|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible
mm39_v1_chr1_+_173964312_173964312	0.243448	Hoxa1	ENSMUST00000053941.4|Olfr424|ENSMUSG00000051528.5|olfactory receptor 424
mm39_v1_chr4_-_106657446_106657500	0.240444	Hoxa1	ENSMUST00000148688.2|Acot11|ENSMUSG00000034853.17|acyl-CoA thioesterase 11
mm39_v1_chr3_-_49711765_49711772	0.238659	Hoxa1	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr4_-_143026033_143026052	0.237379	Hoxa1	ENSMUST00000119654.2|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chr15_+_100262423_100262454	0.235227	Hoxa1	ENSMUST00000175683.8|Higd1c|ENSMUSG00000093550.8|HIG1 domain family, member 1C	ENSMUST00000177211.2|Higd1c|ENSMUSG00000093550.8|HIG1 domain family, member 1C
mm39_v1_chr5_+_137059127_137059218	0.235069	Hoxa1	ENSMUST00000041543.9|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible	ENSMUST00000186451.2|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible
mm39_v1_chr13_+_63387827_63387865	0.224731	Hoxa1	ENSMUST00000222929.2|Aopep|ENSMUSG00000021458.18|aminopeptidase O
mm39_v1_chr2_-_69715899_69715975	0.22428	Hoxa1	ENSMUST00000060447.13|Mettl5|ENSMUSG00000051730.16|methyltransferase like 5
mm39_v1_chr6_-_88423464_88423521	0.223869	Hoxa1	ENSMUST00000204459.3|Eefsec|ENSMUSG00000033216.10|eukaryotic elongation factor, selenocysteine-tRNA-specific	ENSMUST00000203213.3|Eefsec|ENSMUSG00000033216.10|eukaryotic elongation factor, selenocysteine-tRNA-specific	ENSMUST00000205179.3|Eefsec|ENSMUSG00000033216.10|eukaryotic elongation factor, selenocysteine-tRNA-specific	ENSMUST00000165242.4|Eefsec|ENSMUSG00000033216.10|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm39_v1_chr2_+_32127309_32127351	0.218345	Hoxa1	ENSMUST00000123740.3|Pomt1|ENSMUSG00000039254.17|protein-O-mannosyltransferase 1
mm39_v1_chr9_+_15150341_15150461	0.216644	Hoxa1	ENSMUST00000034413.8|Vstm5|ENSMUSG00000031937.8|V-set and transmembrane domain containing 5
mm39_v1_chr6_+_15727798_15727818	0.215724	Hoxa1	ENSMUST00000128849.3|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr14_+_66581745_66581765	0.212104	Hoxa1	ENSMUST00000152093.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000074523.13|Stmn4|ENSMUSG00000022044.15|stathmin-like 4
mm39_v1_chr14_+_70314727_70314817	0.209963	Hoxa1	ENSMUST00000225200.2|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chrX_-_7999009_7999096	0.20918	Hoxa1	ENSMUST00000130832.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000033506.13|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000115623.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000153839.2|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13
mm39_v1_chr15_+_74388044_74388106	0.208906	Hoxa1	ENSMUST00000042035.16|Adgrb1|ENSMUSG00000034730.18|adhesion G protein-coupled receptor B1
mm39_v1_chr19_+_42040681_42040697	0.205225	Hoxa1	ENSMUST00000164518.4|4933411K16Rik|ENSMUSG00000090369.4|RIKEN cDNA 4933411K16 gene
mm39_v1_chr3_-_49711706_49711758	0.205114	Hoxa1	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr7_+_73040908_73041044	0.203667	Hoxa1	ENSMUST00000128471.2|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000139780.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr14_+_66581818_66581829	0.20214	Hoxa1	ENSMUST00000118426.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000121955.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000120229.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000134440.2|Stmn4|ENSMUSG00000022044.15|stathmin-like 4
mm39_v1_chr10_+_81464536_81464553	0.196051	Hoxa1	ENSMUST00000129622.2|Ankrd24|ENSMUSG00000054708.18|ankyrin repeat domain 24
mm39_v1_chr7_+_123061497_123061519	0.195157	Hoxa1	ENSMUST00000033023.10|Aqp8|ENSMUSG00000030762.12|aquaporin 8
mm39_v1_chr8_+_11362805_11362867	0.190668	Hoxa1	ENSMUST00000033899.14|Col4a2|ENSMUSG00000031503.14|collagen, type IV, alpha 2
mm39_v1_chr10_+_36383008_36383022	0.189914	Hoxa1	ENSMUST00000168572.8|Hs3st5|ENSMUSG00000044499.12|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm39_v1_chr3_-_88669551_88669691	0.189502	Hoxa1	ENSMUST00000183267.2|Syt11|ENSMUSG00000068923.15|synaptotagmin XI
mm39_v1_chr13_+_63387870_63387908	0.188985	Hoxa1	ENSMUST00000159152.3|Aopep|ENSMUSG00000021458.18|aminopeptidase O	ENSMUST00000221820.2|Aopep|ENSMUSG00000021458.18|aminopeptidase O
mm39_v1_chr2_-_63014514_63014539	0.184039	Hoxa1	ENSMUST00000112452.2|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr7_+_141048191_141048306	0.180661	Hoxa1	ENSMUST00000211071.2|Cd151|ENSMUSG00000025510.15|CD151 antigen
mm39_v1_chr9_+_59496571_59496636	0.180146	Hoxa1	ENSMUST00000121266.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000118164.3|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr4_-_148021217_148021226	0.17147	Hoxa1	ENSMUST00000019199.14|Plod1|ENSMUSG00000019055.16|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm39_v1_chr15_+_98953776_98953851	0.170252	Hoxa1	ENSMUST00000229268.2|Prph|ENSMUSG00000023484.15|peripherin
mm39_v1_chr13_+_31740117_31740117	0.163062	Hoxa1	ENSMUST00000042118.11|Foxq1|ENSMUSG00000038415.11|forkhead box Q1
mm39_v1_chr3_+_58913234_58913286	0.152985	Hoxa1	ENSMUST00000040846.15|Med12l|ENSMUSG00000056476.14|mediator complex subunit 12-like
mm39_v1_chr3_-_57202546_57202562	0.152572	Hoxa1	ENSMUST00000196506.2|Tm4sf1|ENSMUSG00000027800.15|transmembrane 4 superfamily member 1
mm39_v1_chr3_-_89000591_89000663	0.151707	Hoxa1	ENSMUST00000090929.12|Rusc1|ENSMUSG00000041263.15|RUN and SH3 domain containing 1	ENSMUST00000052539.13|Rusc1|ENSMUSG00000041263.15|RUN and SH3 domain containing 1
mm39_v1_chr1_+_153541020_153541071	0.148512	Hoxa1	ENSMUST00000152114.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8	ENSMUST00000111812.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr16_-_89284830_89284865	0.146324	Hoxa1	ENSMUST00000072280.5|Krtap8-1|ENSMUSG00000059632.5|keratin associated protein 8-1
mm39_v1_chr9_-_4796217_4796267	0.141244	Hoxa1	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr17_+_87224776_87224881	0.140417	Hoxa1	ENSMUST00000042172.7|Tmem247|ENSMUSG00000037689.7|transmembrane protein 247
mm39_v1_chr3_-_7678796_7678826	0.139581	Hoxa1	ENSMUST00000192202.6|Il7|ENSMUSG00000040329.15|interleukin 7
mm39_v1_chr7_+_119289249_119289249	0.134878	Hoxa1	ENSMUST00000047045.10|Acsm4|ENSMUSG00000047026.10|acyl-CoA synthetase medium-chain family member 4
mm39_v1_chr12_-_8351954_8351994	0.134669	Hoxa1	ENSMUST00000220073.2|Gdf7|ENSMUSG00000037660.6|growth differentiation factor 7	ENSMUST00000037313.6|Gdf7|ENSMUSG00000037660.6|growth differentiation factor 7
mm39_v1_chr17_-_35023521_35023542	0.130617	Hoxa1	ENSMUST00000025223.9|Cyp21a1|ENSMUSG00000024365.10|cytochrome P450, family 21, subfamily a, polypeptide 1
mm39_v1_chr14_+_56813060_56813091	0.130386	Hoxa1	ENSMUST00000161553.2|Parp4|ENSMUSG00000054509.8|poly (ADP-ribose) polymerase family, member 4
mm39_v1_chr18_+_56695515_56695665	0.126509	Hoxa1	ENSMUST00000130163.8|Phax|ENSMUSG00000008301.12|phosphorylated adaptor for RNA export	ENSMUST00000132628.8|Phax|ENSMUSG00000008301.12|phosphorylated adaptor for RNA export
mm39_v1_chr10_+_81068980_81069025	0.123727	Hoxa1	ENSMUST00000144087.2|Zfr2|ENSMUSG00000034949.19|zinc finger RNA binding protein 2	ENSMUST00000117798.8|Zfr2|ENSMUSG00000034949.19|zinc finger RNA binding protein 2
mm39_v1_chr1_+_153767478_153767488	0.115926	Hoxa1	ENSMUST00000050660.6|Teddm1a|ENSMUSG00000047053.6|transmembrane epididymal protein 1A
mm39_v1_chr11_-_5848771_5848788	0.112603	Hoxa1	ENSMUST00000102921.4|Myl7|ENSMUSG00000020469.9|myosin, light polypeptide 7, regulatory
mm39_v1_chr9_-_4796142_4796159	0.111889	Hoxa1	ENSMUST00000063508.15|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr8_-_11362731_11362826	0.10947	Hoxa1	ENSMUST00000033898.10|Col4a1|ENSMUSG00000031502.12|collagen, type IV, alpha 1
mm39_v1_chr9_+_58036345_58036371	0.107709	Hoxa1	ENSMUST00000085677.9|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6
mm39_v1_chr15_-_78272957_78272977	0.105289	Hoxa1	ENSMUST00000169575.2|Tex33|ENSMUSG00000062154.15|testis expressed 33
mm39_v1_chr7_+_139902515_139902515	0.0981299	Hoxa1	ENSMUST00000078103.3|Olfr525|ENSMUSG00000061489.4|olfactory receptor 525
mm39_v1_chr2_+_119803180_119803228	0.0933823	Hoxa1	ENSMUST00000066058.8|Mapkbp1|ENSMUSG00000033902.13|mitogen-activated protein kinase binding protein 1
mm39_v1_chr16_+_16714333_16714462	0.091915	Hoxa1	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr11_+_58556387_58556387	0.0870643	Hoxa1	ENSMUST00000072030.4|Olfr322|ENSMUSG00000063549.5|olfactory receptor 322
mm39_v1_chr10_+_81464370_81464469	0.0819573	Hoxa1	ENSMUST00000123896.8|Ankrd24|ENSMUSG00000054708.18|ankyrin repeat domain 24	ENSMUST00000153573.2|Ankrd24|ENSMUSG00000054708.18|ankyrin repeat domain 24	ENSMUST00000119336.8|Ankrd24|ENSMUSG00000054708.18|ankyrin repeat domain 24
mm39_v1_chr11_-_69439934_69439934	0.0804147	Hoxa1	ENSMUST00000108659.2|Dnah2|ENSMUSG00000005237.15|dynein, axonemal, heavy chain 2
mm39_v1_chr1_+_11063678_11063702	0.0803678	Hoxa1	ENSMUST00000027056.12|Prex2|ENSMUSG00000048960.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm39_v1_chr18_+_82929451_82929458	0.0796635	Hoxa1	ENSMUST00000235902.2|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr4_+_138503046_138503095	0.0723463	Hoxa1	ENSMUST00000030528.9|Pla2g2d|ENSMUSG00000041202.13|phospholipase A2, group IID
mm39_v1_chr2_-_152793607_152793620	0.0699172	Hoxa1	ENSMUST00000109811.4|Dusp15|ENSMUSG00000042662.17|dual specificity phosphatase-like 15
mm39_v1_chr18_+_82929037_82929069	0.0697303	Hoxa1	ENSMUST00000236858.2|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr9_+_58036759_58036784	0.0636534	Hoxa1	ENSMUST00000133287.8|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6
mm39_v1_chr2_-_152793469_152793528	0.0632996	Hoxa1	ENSMUST00000037715.7|Dusp15|ENSMUSG00000042662.17|dual specificity phosphatase-like 15
mm39_v1_chr9_+_58036604_58036632	0.0594789	Hoxa1	ENSMUST00000034880.10|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6
mm39_v1_chr6_-_52168675_52168733	0.0529395	Hoxa1	ENSMUST00000101395.3|Hoxa4|ENSMUSG00000000942.11|homeobox A4
mm39_v1_chr5_+_43673093_43673137	0.0528228	Hoxa1	ENSMUST00000144558.3|C1qtnf7|ENSMUSG00000061535.12|C1q and tumor necrosis factor related protein 7
mm39_v1_chr11_-_65050716_65050717	0.0526175	Hoxa1	ENSMUST00000020855.5|1700086D15Rik|ENSMUSG00000020548.11|RIKEN cDNA 1700086D15 gene	ENSMUST00000108696.7|1700086D15Rik|ENSMUSG00000020548.11|RIKEN cDNA 1700086D15 gene
mm39_v1_chr7_-_102507962_102507972	0.0385982	Hoxa1	ENSMUST00000213481.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566	ENSMUST00000209952.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566
mm39_v1_chr2_+_119803230_119803384	0.0245525	Hoxa1	ENSMUST00000229024.2|Mapkbp1|ENSMUSG00000033902.13|mitogen-activated protein kinase binding protein 1
mm39_v1_chr17_+_45866618_45866643	0.0243666	Hoxa1	ENSMUST00000024742.9|Nfkbie|ENSMUSG00000023947.9|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	ENSMUST00000233929.2|Nfkbie|ENSMUSG00000023947.9|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon
mm39_v1_chr6_+_40302106_40302106	0.0237354	Hoxa1	ENSMUST00000031977.12|Agk|ENSMUSG00000029916.12|acylglycerol kinase
mm39_v1_chr10_+_88721854_88721872	0.0229369	Hoxa1	ENSMUST00000020255.8|Slc5a8|ENSMUSG00000020062.8|solute carrier family 5 (iodide transporter), member 8
mm39_v1_chr7_+_144391786_144391821	0.0209248	Hoxa1	ENSMUST00000155320.8|Fgf3|ENSMUSG00000031074.15|fibroblast growth factor 3
mm39_v1_chr15_+_6552270_6552346	0.0183742	Hoxa1	ENSMUST00000226412.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr6_+_40419797_40419871	0.0176925	Hoxa1	ENSMUST00000038907.9|Wee2|ENSMUSG00000037159.12|WEE1 homolog 2 (S. pombe)	ENSMUST00000141490.2|Wee2|ENSMUSG00000037159.12|WEE1 homolog 2 (S. pombe)
mm39_v1_chr8_-_91544021_91544021	0.011624	Hoxa1	ENSMUST00000209208.2|Gm19935|ENSMUSG00000110332.2|predicted gene, 19935
mm39_v1_chr10_+_67021509_67021547	0.0103525	Hoxa1	ENSMUST00000173689.8|Jmjd1c|ENSMUSG00000037876.18|jumonji domain containing 1C
mm39_v1_chrX_-_133062677_133062677	0.00838365	Hoxa1	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chr13_+_113429690_113429759	0.0071671	Hoxa1	ENSMUST00000136755.10|Cspg4b|ENSMUSG00000021763.18|chondroitin sulfate proteoglycan 4B
mm39_v1_chr5_-_135601887_135601905	0.00530616	Hoxa1	ENSMUST00000004936.10|Ccl24|ENSMUSG00000004814.11|chemokine (C-C motif) ligand 24	ENSMUST00000201401.2|Ccl24|ENSMUSG00000004814.11|chemokine (C-C motif) ligand 24
mm39_v1_chrX_-_36432482_36432509	0.00432076	Hoxa1	ENSMUST00000046557.6|Akap14|ENSMUSG00000036551.7|A kinase (PRKA) anchor protein 14
mm39_v1_chr2_+_36342599_36342599	0.000777903	Hoxa1	ENSMUST00000072854.2|Olfr340|ENSMUSG00000094266.2|olfactory receptor 340
