mm39_v1_chr11_+_115353290_115353332	7.94032	Gli3_Zic1	ENSMUST00000106532.4|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5	ENSMUST00000092445.12|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5	ENSMUST00000153466.2|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5
mm39_v1_chr1_+_72863641_72863662	6.08217	Gli3_Zic1	ENSMUST00000047328.11|Igfbp2|ENSMUSG00000039323.19|insulin-like growth factor binding protein 2
mm39_v1_chr7_-_142211203_142211233	5.00076	Gli3_Zic1	ENSMUST00000097936.9|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2	ENSMUST00000000033.12|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2
mm39_v1_chr9_+_62765362_62765420	3.51026	Gli3_Zic1	ENSMUST00000213643.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000034777.14|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000163820.3|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215870.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000214633.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215968.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4
mm39_v1_chr15_-_91075933_91076028	2.40383	Gli3_Zic1	ENSMUST00000069511.8|Abcd2|ENSMUSG00000055782.10|ATP-binding cassette, sub-family D (ALD), member 2
mm39_v1_chr8_+_69333143_69333216	2.25049	Gli3_Zic1	ENSMUST00000015712.15|Lpl|ENSMUSG00000015568.17|lipoprotein lipase
mm39_v1_chr6_-_101354858_101354977	2.22273	Gli3_Zic1	ENSMUST00000075994.11|Pdzrn3|ENSMUSG00000035357.18|PDZ domain containing RING finger 3
mm39_v1_chr4_+_123127349_123127349	2.22138	Gli3_Zic1	ENSMUST00000040821.5|Heyl|ENSMUSG00000032744.5|hairy/enhancer-of-split related with YRPW motif-like
mm39_v1_chr7_-_19504446_19504472	2.08444	Gli3_Zic1	ENSMUST00000003061.14|Bcam|ENSMUSG00000002980.15|basal cell adhesion molecule
mm39_v1_chr11_-_116545071_116545151	1.93298	Gli3_Zic1	ENSMUST00000021166.6|Cygb|ENSMUSG00000020810.6|cytoglobin
mm39_v1_chr14_+_55797934_55797990	1.66187	Gli3_Zic1	ENSMUST00000121622.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000143431.2|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000150481.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr9_+_77824646_77824668	1.65525	Gli3_Zic1	ENSMUST00000034904.14|Elovl5|ENSMUSG00000032349.14|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm39_v1_chr19_+_4761181_4761286	1.57051	Gli3_Zic1	ENSMUST00000008991.8|Sptbn2|ENSMUSG00000067889.8|spectrin beta, non-erythrocytic 2
mm39_v1_chr14_+_14475188_14475235	1.56984	Gli3_Zic1	ENSMUST00000026315.8|Dnase1l3|ENSMUSG00000025279.8|deoxyribonuclease 1-like 3
mm39_v1_chr7_+_28240262_28240340	1.56968	Gli3_Zic1	ENSMUST00000119180.4|Sycn|ENSMUSG00000084174.4|syncollin
mm39_v1_chr19_+_42034231_42034336	1.54623	Gli3_Zic1	ENSMUST00000172244.8|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1	ENSMUST00000081714.5|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1
mm39_v1_chr6_+_30738043_30738058	1.51432	Gli3_Zic1	ENSMUST00000163949.9|Mest|ENSMUSG00000051855.16|mesoderm specific transcript	ENSMUST00000124665.3|Mest|ENSMUSG00000051855.16|mesoderm specific transcript
mm39_v1_chr14_+_55798517_55798528	1.51266	Gli3_Zic1	ENSMUST00000117701.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr14_+_55798362_55798432	1.46991	Gli3_Zic1	ENSMUST00000072530.11|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000128490.9|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr19_+_4282487_4282534	1.42301	Gli3_Zic1	ENSMUST00000235306.2|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr10_+_87357657_87357780	1.4078	Gli3_Zic1	ENSMUST00000020241.17|Pah|ENSMUSG00000020051.18|phenylalanine hydroxylase
mm39_v1_chr19_-_38113249_38113276	1.40173	Gli3_Zic1	ENSMUST00000112335.4|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma
mm39_v1_chr19_+_52252735_52252893	1.38884	Gli3_Zic1	ENSMUST00000039652.6|Ins1|ENSMUSG00000035804.6|insulin I
mm39_v1_chr10_+_87357816_87357889	1.33136	Gli3_Zic1	ENSMUST00000218573.2|Pah|ENSMUSG00000020051.18|phenylalanine hydroxylase
mm39_v1_chr2_-_29142965_29143025	1.32246	Gli3_Zic1	ENSMUST00000155949.2|6530402F18Rik|ENSMUSG00000079499.10|RIKEN cDNA 6530402F18 gene	ENSMUST00000071201.5|Ntng2|ENSMUSG00000035513.20|netrin G2	ENSMUST00000154682.8|6530402F18Rik|ENSMUSG00000079499.10|RIKEN cDNA 6530402F18 gene	ENSMUST00000028141.6|6530402F18Rik|ENSMUSG00000079499.10|RIKEN cDNA 6530402F18 gene
mm39_v1_chr19_+_4281953_4281982	1.31983	Gli3_Zic1	ENSMUST00000025773.5|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr1_-_134163102_134163184	1.31054	Gli3_Zic1	ENSMUST00000187631.2|Adora1|ENSMUSG00000042429.9|adenosine A1 receptor	ENSMUST00000038191.8|Adora1|ENSMUSG00000042429.9|adenosine A1 receptor	ENSMUST00000086465.6|Adora1|ENSMUSG00000042429.9|adenosine A1 receptor
mm39_v1_chr10_+_87357782_87357799	1.27303	Gli3_Zic1	ENSMUST00000219813.2|Pah|ENSMUSG00000020051.18|phenylalanine hydroxylase
mm39_v1_chr4_+_131649001_131649082	1.26135	Gli3_Zic1	ENSMUST00000094666.4|Tmem200b|ENSMUSG00000070720.5|transmembrane protein 200B
mm39_v1_chr2_-_91762033_91762069	1.24259	Gli3_Zic1	ENSMUST00000111309.8|Mdk|ENSMUSG00000027239.15|midkine	ENSMUST00000090602.6|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr19_-_38113056_38113173	1.23082	Gli3_Zic1	ENSMUST00000236283.2|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma
mm39_v1_chr2_-_92264374_92264398	1.21816	Gli3_Zic1	ENSMUST00000111278.2|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)	ENSMUST00000090559.12|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)
mm39_v1_chr18_-_38734389_38734468	1.20779	Gli3_Zic1	ENSMUST00000025295.8|Spry4|ENSMUSG00000024427.8|sprouty RTK signaling antagonist 4
mm39_v1_chr5_+_30745447_30745514	1.20041	Gli3_Zic1	ENSMUST00000066295.5|Kcnk3|ENSMUSG00000049265.9|potassium channel, subfamily K, member 3
mm39_v1_chr7_-_142209755_142209792	1.19558	Gli3_Zic1	ENSMUST00000178921.2|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2
mm39_v1_chr13_+_56586156_56586182	1.18827	Gli3_Zic1	ENSMUST00000021971.6|Slc25a48|ENSMUSG00000021509.6|solute carrier family 25, member 48
mm39_v1_chr5_+_31454787_31454932	1.13468	Gli3_Zic1	ENSMUST00000201166.4|Gckr|ENSMUSG00000059434.10|glucokinase regulatory protein	ENSMUST00000072228.9|Gckr|ENSMUSG00000059434.10|glucokinase regulatory protein
mm39_v1_chr2_-_91762119_91762141	1.1327	Gli3_Zic1	ENSMUST00000069423.13|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr7_-_126073994_126074148	1.12568	Gli3_Zic1	ENSMUST00000205733.2|Sh2b1|ENSMUSG00000030733.11|SH2B adaptor protein 1	ENSMUST00000205889.2|Sh2b1|ENSMUSG00000030733.11|SH2B adaptor protein 1
mm39_v1_chr1_-_134162231_134162316	1.11762	Gli3_Zic1	ENSMUST00000169927.2|Adora1|ENSMUSG00000042429.9|adenosine A1 receptor
mm39_v1_chr5_+_31454939_31454961	1.11376	Gli3_Zic1	ENSMUST00000201675.3|Gckr|ENSMUSG00000059434.10|glucokinase regulatory protein
mm39_v1_chr4_+_131648509_131648518	1.10222	Gli3_Zic1	ENSMUST00000238733.2|Tmem200b|ENSMUSG00000070720.5|transmembrane protein 200B
mm39_v1_chr9_+_103940879_103940935	1.09327	Gli3_Zic1	ENSMUST00000047799.13|Acad11|ENSMUSG00000090150.11|acyl-Coenzyme A dehydrogenase family, member 11	ENSMUST00000189998.3|Acad11|ENSMUSG00000090150.11|acyl-Coenzyme A dehydrogenase family, member 11
mm39_v1_chr5_+_93241287_93241310	1.07092	Gli3_Zic1	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr19_+_4282040_4282054	1.05303	Gli3_Zic1	ENSMUST00000237518.2|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr17_-_35081129_35081155	1.02723	Gli3_Zic1	ENSMUST00000154526.8|Cfb|ENSMUSG00000090231.11|complement factor B
mm39_v1_chr11_-_96714813_96714850	0.978921	Gli3_Zic1	ENSMUST00000142065.2|Nfe2l1|ENSMUSG00000038615.18|nuclear factor, erythroid derived 2,-like 1	ENSMUST00000167110.8|Nfe2l1|ENSMUSG00000038615.18|nuclear factor, erythroid derived 2,-like 1
mm39_v1_chr17_-_35081456_35081546	0.956632	Gli3_Zic1	ENSMUST00000025229.11|Cfb|ENSMUSG00000090231.11|complement factor B	ENSMUST00000176203.9|Cfb|ENSMUSG00000090231.11|complement factor B	ENSMUST00000128767.8|Cfb|ENSMUSG00000090231.11|complement factor B
mm39_v1_chr19_-_38113696_38113754	0.941211	Gli3_Zic1	ENSMUST00000025951.14|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma	ENSMUST00000237287.2|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma
mm39_v1_chr19_+_4771089_4771193	0.938794	Gli3_Zic1	ENSMUST00000238976.3|Sptbn2|ENSMUSG00000067889.8|spectrin beta, non-erythrocytic 2
mm39_v1_chr14_+_33662976_33663011	0.931318	Gli3_Zic1	ENSMUST00000100720.2|Gdf2|ENSMUSG00000072625.2|growth differentiation factor 2
mm39_v1_chr5_+_117457126_117457185	0.925235	Gli3_Zic1	ENSMUST00000111967.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr6_-_18030584_18030584	0.918032	Gli3_Zic1	ENSMUST00000010941.6|Wnt2|ENSMUSG00000010797.7|wingless-type MMTV integration site family, member 2
mm39_v1_chr6_-_113508536_113508628	0.899572	Gli3_Zic1	ENSMUST00000032425.7|Emc3|ENSMUSG00000030286.7|ER membrane protein complex subunit 3
mm39_v1_chrX_-_93585668_93585749	0.894909	Gli3_Zic1	ENSMUST00000026142.8|Maged1|ENSMUSG00000025151.17|MAGE family member D1
mm39_v1_chr4_-_128856213_128856242	0.884118	Gli3_Zic1	ENSMUST00000119354.8|Azin2|ENSMUSG00000028789.17|antizyme inhibitor 2	ENSMUST00000106068.8|Azin2|ENSMUSG00000028789.17|antizyme inhibitor 2	ENSMUST00000030581.10|Azin2|ENSMUSG00000028789.17|antizyme inhibitor 2
mm39_v1_chr16_-_84970617_84970654	0.870033	Gli3_Zic1	ENSMUST00000226232.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000227021.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000005406.12|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000227723.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein
mm39_v1_chr11_+_118324652_118324689	0.854809	Gli3_Zic1	ENSMUST00000106286.3|C1qtnf1|ENSMUSG00000017446.15|C1q and tumor necrosis factor related protein 1
mm39_v1_chr8_-_65146079_65146108	0.851576	Gli3_Zic1	ENSMUST00000048967.9|Cpe|ENSMUSG00000037852.9|carboxypeptidase E
mm39_v1_chr16_-_84970580_84970606	0.850022	Gli3_Zic1	ENSMUST00000227737.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000226801.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein
mm39_v1_chr9_+_50663171_50663202	0.844008	Gli3_Zic1	ENSMUST00000214609.2|Cryab|ENSMUSG00000032060.11|crystallin, alpha B
mm39_v1_chr2_+_15060051_15060222	0.841159	Gli3_Zic1	ENSMUST00000069870.11|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000239125.2|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000193836.3|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chr7_-_139696308_139696389	0.827593	Gli3_Zic1	ENSMUST00000026538.13|Echs1|ENSMUSG00000025465.14|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
mm39_v1_chr2_+_150628655_150628714	0.79107	Gli3_Zic1	ENSMUST00000045441.8|Pygb|ENSMUSG00000033059.8|brain glycogen phosphorylase
mm39_v1_chr11_+_68986043_68986115	0.772561	Gli3_Zic1	ENSMUST00000101004.9|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr5_+_93241385_93241430	0.747885	Gli3_Zic1	ENSMUST00000201421.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202415.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202217.3|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr11_+_101137231_101137393	0.745356	Gli3_Zic1	ENSMUST00000122006.8|Ramp2|ENSMUSG00000001240.14|receptor (calcitonin) activity modifying protein 2	ENSMUST00000151830.2|Ramp2|ENSMUSG00000001240.14|receptor (calcitonin) activity modifying protein 2
mm39_v1_chr10_-_93146825_93146851	0.732064	Gli3_Zic1	ENSMUST00000151153.2|Elk3|ENSMUSG00000008398.17|ELK3, member of ETS oncogene family
mm39_v1_chr16_-_85599994_85600009	0.722524	Gli3_Zic1	ENSMUST00000023610.15|Adamts1|ENSMUSG00000022893.15|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm39_v1_chr6_-_84564623_84564662	0.714834	Gli3_Zic1	ENSMUST00000205228.3|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr6_+_17463925_17464048	0.709534	Gli3_Zic1	ENSMUST00000115442.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr2_-_35994072_35994085	0.699637	Gli3_Zic1	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr2_+_157401998_157402050	0.697493	Gli3_Zic1	ENSMUST00000153739.9|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173595.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000109526.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173839.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173041.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173793.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000172487.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000088484.6|Nnat|ENSMUSG00000067786.17|neuronatin
mm39_v1_chr10_-_93146937_93147024	0.691614	Gli3_Zic1	ENSMUST00000008542.12|Elk3|ENSMUSG00000008398.17|ELK3, member of ETS oncogene family
mm39_v1_chr15_-_89263790_89263821	0.670368	Gli3_Zic1	ENSMUST00000238996.2|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chr9_-_110572721_110572754	0.662328	Gli3_Zic1	ENSMUST00000166716.8|Pth1r|ENSMUSG00000032492.15|parathyroid hormone 1 receptor
mm39_v1_chr11_-_100830288_100830311	0.661364	Gli3_Zic1	ENSMUST00000138438.2|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3
mm39_v1_chr16_-_46317318_46317349	0.648349	Gli3_Zic1	ENSMUST00000023335.13|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3	ENSMUST00000023334.15|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3
mm39_v1_chrX_+_7439839_7439883	0.644554	Gli3_Zic1	ENSMUST00000144719.9|Flicr|ENSMUSG00000039545.17|Foxp3 regulating long intergenic noncoding RNA	ENSMUST00000234896.2|Foxp3|ENSMUSG00000039521.14|forkhead box P3
mm39_v1_chr6_-_142647985_142648016	0.640538	Gli3_Zic1	ENSMUST00000205202.3|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	ENSMUST00000073173.12|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	ENSMUST00000111771.8|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm39_v1_chr6_+_86172196_86172224	0.62556	Gli3_Zic1	ENSMUST00000032066.13|Tgfa|ENSMUSG00000029999.15|transforming growth factor alpha
mm39_v1_chr7_+_127846121_127846165	0.625401	Gli3_Zic1	ENSMUST00000167965.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr10_-_43934774_43934879	0.623008	Gli3_Zic1	ENSMUST00000239010.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr4_+_45848664_45848696	0.608355	Gli3_Zic1	ENSMUST00000107783.8|Stra6l|ENSMUSG00000028327.15|STRA6-like
mm39_v1_chr17_-_66079681_66079747	0.603763	Gli3_Zic1	ENSMUST00000070673.9|Rab31|ENSMUSG00000056515.10|RAB31, member RAS oncogene family
mm39_v1_chr1_-_151965876_151965918	0.601081	Gli3_Zic1	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr15_-_89263128_89263146	0.599034	Gli3_Zic1	ENSMUST00000227834.2|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chr11_-_100830183_100830262	0.598104	Gli3_Zic1	ENSMUST00000092671.12|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3	ENSMUST00000103114.8|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3
mm39_v1_chrX_+_100427331_100427347	0.589875	Gli3_Zic1	ENSMUST00000119190.2|Gjb1|ENSMUSG00000047797.15|gap junction protein, beta 1
mm39_v1_chr9_+_44966464_44966494	0.580232	Gli3_Zic1	ENSMUST00000114664.8|Mpzl3|ENSMUSG00000070305.11|myelin protein zero-like 3
mm39_v1_chr11_+_4085164_4085222	0.578505	Gli3_Zic1	ENSMUST00000003677.11|Rnf215|ENSMUSG00000003581.15|ring finger protein 215	ENSMUST00000145705.8|Rnf215|ENSMUSG00000003581.15|ring finger protein 215
mm39_v1_chr17_-_85097945_85098014	0.577463	Gli3_Zic1	ENSMUST00000112308.9|Lrpprc|ENSMUSG00000024120.13|leucine-rich PPR-motif containing
mm39_v1_chr7_-_126074222_126074251	0.576415	Gli3_Zic1	ENSMUST00000205497.2|Sh2b1|ENSMUSG00000030733.11|SH2B adaptor protein 1
mm39_v1_chr6_-_142647944_142647981	0.575025	Gli3_Zic1	ENSMUST00000100827.5|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	ENSMUST00000087527.11|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm39_v1_chr4_+_45848918_45848950	0.568782	Gli3_Zic1	ENSMUST00000030011.6|Stra6l|ENSMUSG00000028327.15|STRA6-like
mm39_v1_chr11_-_78136767_78136813	0.568483	Gli3_Zic1	ENSMUST00000002121.5|Supt6|ENSMUSG00000002052.7|SPT6, histone chaperone and transcription elongation factor
mm39_v1_chr13_-_36918424_36918466	0.56804	Gli3_Zic1	ENSMUST00000037623.15|Nrn1|ENSMUSG00000039114.17|neuritin 1
mm39_v1_chr7_-_111379170_111379200	0.56613	Gli3_Zic1	ENSMUST00000049430.15|Galnt18|ENSMUSG00000038296.15|polypeptide N-acetylgalactosaminyltransferase 18	ENSMUST00000106663.2|Galnt18|ENSMUSG00000038296.15|polypeptide N-acetylgalactosaminyltransferase 18
mm39_v1_chr1_-_75482975_75483046	0.562464	Gli3_Zic1	ENSMUST00000113567.10|Obsl1|ENSMUSG00000026211.19|obscurin-like 1	ENSMUST00000113565.3|Obsl1|ENSMUSG00000026211.19|obscurin-like 1
mm39_v1_chr4_+_45848816_45848910	0.561841	Gli3_Zic1	ENSMUST00000107782.8|Stra6l|ENSMUSG00000028327.15|STRA6-like
mm39_v1_chr5_+_117457356_117457393	0.558891	Gli3_Zic1	ENSMUST00000086464.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr7_+_127845984_127846120	0.557325	Gli3_Zic1	ENSMUST00000164710.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1	ENSMUST00000070656.12|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr11_-_100830366_100830388	0.550828	Gli3_Zic1	ENSMUST00000127638.8|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3
mm39_v1_chr15_-_89024824_89024913	0.550483	Gli3_Zic1	ENSMUST00000088827.8|Mapk12|ENSMUSG00000022610.11|mitogen-activated protein kinase 12
mm39_v1_chr9_-_44646487_44646510	0.550067	Gli3_Zic1	ENSMUST00000034611.15|Phldb1|ENSMUSG00000048537.17|pleckstrin homology like domain, family B, member 1
mm39_v1_chr5_-_5564730_5564830	0.541616	Gli3_Zic1	ENSMUST00000115445.8|Cldn12|ENSMUSG00000046798.15|claudin 12	ENSMUST00000179804.8|Cldn12|ENSMUSG00000046798.15|claudin 12	ENSMUST00000125110.2|Cldn12|ENSMUSG00000046798.15|claudin 12	ENSMUST00000115446.8|Cldn12|ENSMUSG00000046798.15|claudin 12
mm39_v1_chr6_+_48372520_48372580	0.540047	Gli3_Zic1	ENSMUST00000114571.8|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1	ENSMUST00000031815.12|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1	ENSMUST00000203371.3|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr19_+_6434416_6434453	0.534086	Gli3_Zic1	ENSMUST00000035269.15|Pygm|ENSMUSG00000032648.15|muscle glycogen phosphorylase	ENSMUST00000113483.2|Pygm|ENSMUSG00000032648.15|muscle glycogen phosphorylase
mm39_v1_chr2_-_160714473_160714542	0.526821	Gli3_Zic1	ENSMUST00000103111.9|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr9_-_110572694_110572716	0.526179	Gli3_Zic1	ENSMUST00000196057.2|Pth1r|ENSMUSG00000032492.15|parathyroid hormone 1 receptor
mm39_v1_chr1_+_75336965_75336997	0.526146	Gli3_Zic1	ENSMUST00000027409.10|Des|ENSMUSG00000026208.10|desmin
mm39_v1_chr7_+_127728712_127728773	0.517318	Gli3_Zic1	ENSMUST00000033053.8|Itgax|ENSMUSG00000030789.10|integrin alpha X	ENSMUST00000205460.2|Itgax|ENSMUSG00000030789.10|integrin alpha X
mm39_v1_chr7_-_126483851_126483901	0.517056	Gli3_Zic1	ENSMUST00000071268.11|Taok2|ENSMUSG00000059981.13|TAO kinase 2	ENSMUST00000117394.2|Taok2|ENSMUSG00000059981.13|TAO kinase 2
mm39_v1_chr8_+_127790772_127791097	0.514663	Gli3_Zic1	ENSMUST00000079777.12|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160272.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162907.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162536.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000026921.13|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162665.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162602.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160581.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000161355.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162531.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160766.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000159537.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator
mm39_v1_chr9_-_58065800_58065844	0.512365	Gli3_Zic1	ENSMUST00000168864.4|Islr|ENSMUSG00000037206.16|immunoglobulin superfamily containing leucine-rich repeat
mm39_v1_chr4_+_116953218_116953280	0.510814	Gli3_Zic1	ENSMUST00000030443.12|Ptch2|ENSMUSG00000028681.12|patched 2
mm39_v1_chr15_-_89263448_89263462	0.499524	Gli3_Zic1	ENSMUST00000049968.9|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chrX_-_149595873_149596150	0.496958	Gli3_Zic1	ENSMUST00000131241.2|Maged2|ENSMUSG00000025268.16|MAGE family member D2	ENSMUST00000147152.3|Maged2|ENSMUSG00000025268.16|MAGE family member D2	ENSMUST00000143843.8|Maged2|ENSMUSG00000025268.16|MAGE family member D2
mm39_v1_chr3_-_101017594_101017652	0.493051	Gli3_Zic1	ENSMUST00000102694.4|Ptgfrn|ENSMUSG00000027864.10|prostaglandin F2 receptor negative regulator
mm39_v1_chr16_-_46317135_46317246	0.49288	Gli3_Zic1	ENSMUST00000149901.2|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3	ENSMUST00000096052.9|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3
mm39_v1_chr1_-_153061758_153061802	0.491747	Gli3_Zic1	ENSMUST00000185356.7|Lamc2|ENSMUSG00000026479.14|laminin, gamma 2
mm39_v1_chr4_-_150039486_150039507	0.485649	Gli3_Zic1	ENSMUST00000038562.9|Spsb1|ENSMUSG00000039911.14|splA/ryanodine receptor domain and SOCS box containing 1
mm39_v1_chr3_+_28038283_28038355	0.473281	Gli3_Zic1	ENSMUST00000067757.11|Pld1|ENSMUSG00000027695.17|phospholipase D1	ENSMUST00000123539.8|Pld1|ENSMUSG00000027695.17|phospholipase D1
mm39_v1_chr2_-_35995283_35995446	0.473216	Gli3_Zic1	ENSMUST00000112960.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112967.12|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112963.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr11_-_35871300_35871406	0.472399	Gli3_Zic1	ENSMUST00000018993.7|Wwc1|ENSMUSG00000018849.7|WW, C2 and coiled-coil domain containing 1
mm39_v1_chr4_+_15265798_15265831	0.471701	Gli3_Zic1	ENSMUST00000062684.9|Tmem64|ENSMUSG00000043252.9|transmembrane protein 64
mm39_v1_chr9_-_50663648_50663673	0.471079	Gli3_Zic1	ENSMUST00000217159.2|Hspb2|ENSMUSG00000038086.5|heat shock protein 2
mm39_v1_chr17_-_13070780_13070804	0.468463	Gli3_Zic1	ENSMUST00000162389.2|Mas1|ENSMUSG00000068037.12|MAS1 oncogene	ENSMUST00000162119.8|Mas1|ENSMUSG00000068037.12|MAS1 oncogene	ENSMUST00000159223.8|Mas1|ENSMUSG00000068037.12|MAS1 oncogene
mm39_v1_chr11_-_70120503_70120592	0.463107	Gli3_Zic1	ENSMUST00000153449.2|Bcl6b|ENSMUSG00000000317.12|B cell CLL/lymphoma 6, member B	ENSMUST00000000326.12|Bcl6b|ENSMUSG00000000317.12|B cell CLL/lymphoma 6, member B
mm39_v1_chr10_+_40505985_40506073	0.460834	Gli3_Zic1	ENSMUST00000019977.8|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000214102.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000213503.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000213442.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000216830.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase
mm39_v1_chr16_+_91066602_91066667	0.459554	Gli3_Zic1	ENSMUST00000056882.7|Olig1|ENSMUSG00000046160.7|oligodendrocyte transcription factor 1
mm39_v1_chrX_-_149595711_149595801	0.45151	Gli3_Zic1	ENSMUST00000112697.10|Maged2|ENSMUSG00000025268.16|MAGE family member D2
mm39_v1_chr6_-_84564972_84564994	0.450409	Gli3_Zic1	ENSMUST00000204109.2|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr8_+_107662352_107662410	0.448873	Gli3_Zic1	ENSMUST00000212524.2|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2	ENSMUST00000047425.5|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2
mm39_v1_chr13_+_54519161_54519173	0.443787	Gli3_Zic1	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr5_-_5564873_5564891	0.44045	Gli3_Zic1	ENSMUST00000060947.14|Cldn12|ENSMUSG00000046798.15|claudin 12
mm39_v1_chr11_-_30218167_30218196	0.437335	Gli3_Zic1	ENSMUST00000006629.14|Sptbn1|ENSMUSG00000020315.19|spectrin beta, non-erythrocytic 1
mm39_v1_chr5_-_24935633_24935725	0.420885	Gli3_Zic1	ENSMUST00000068693.12|Wdr86|ENSMUSG00000055235.12|WD repeat domain 86
mm39_v1_chr9_-_106315368_106315397	0.41833	Gli3_Zic1	ENSMUST00000190900.2|Acy1|ENSMUSG00000023262.14|aminoacylase 1	ENSMUST00000214275.2|Acy1|ENSMUSG00000023262.14|aminoacylase 1
mm39_v1_chr16_-_85347305_85347321	0.414666	Gli3_Zic1	ENSMUST00000175700.8|Cyyr1|ENSMUSG00000041134.16|cysteine and tyrosine-rich protein 1	ENSMUST00000114174.3|Cyyr1|ENSMUSG00000041134.16|cysteine and tyrosine-rich protein 1
mm39_v1_chr13_-_9815350_9815405	0.410826	Gli3_Zic1	ENSMUST00000110636.9|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11	ENSMUST00000152725.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr5_+_115644727_115644915	0.410321	Gli3_Zic1	ENSMUST00000067268.15|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000086523.7|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000212819.3|Pxn|ENSMUSG00000029528.20|paxillin
mm39_v1_chr13_-_9815173_9815243	0.40968	Gli3_Zic1	ENSMUST00000062658.15|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11	ENSMUST00000222358.2|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr6_+_17491231_17491242	0.409005	Gli3_Zic1	ENSMUST00000080469.12|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr17_+_15230438_15230438	0.408718	Gli3_Zic1	ENSMUST00000097395.5|Gm3435|ENSMUSG00000116895.2|predicted gene 3435
mm39_v1_chr11_+_77654072_77654166	0.40217	Gli3_Zic1	ENSMUST00000108375.9|Myo18a|ENSMUSG00000000631.21|myosin XVIIIA
mm39_v1_chr17_+_56633040_56633097	0.402166	Gli3_Zic1	ENSMUST00000139679.8|Kdm4b|ENSMUSG00000024201.13|lysine (K)-specific demethylase 4B	ENSMUST00000025036.11|Kdm4b|ENSMUSG00000024201.13|lysine (K)-specific demethylase 4B	ENSMUST00000086835.12|Kdm4b|ENSMUSG00000024201.13|lysine (K)-specific demethylase 4B
mm39_v1_chr19_+_5524933_5524966	0.400888	Gli3_Zic1	ENSMUST00000236518.2|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm39_v1_chr17_+_15261896_15261935	0.396215	Gli3_Zic1	ENSMUST00000226599.2|Ermard|ENSMUSG00000036552.20|ER membrane associated RNA degradation	ENSMUST00000228518.2|Ermard|ENSMUSG00000036552.20|ER membrane associated RNA degradation	ENSMUST00000226213.2|Ermard|ENSMUSG00000036552.20|ER membrane associated RNA degradation
mm39_v1_chr2_+_70305267_70305267	0.395902	Gli3_Zic1	ENSMUST00000100043.3|Sp5|ENSMUSG00000075304.3|trans-acting transcription factor 5
mm39_v1_chr4_+_106418224_106418235	0.393228	Gli3_Zic1	ENSMUST00000047973.4|Dhcr24|ENSMUSG00000034926.4|24-dehydrocholesterol reductase
mm39_v1_chr4_-_4138432_4138479	0.385651	Gli3_Zic1	ENSMUST00000070375.8|Penk|ENSMUSG00000045573.10|preproenkephalin
mm39_v1_chr2_+_26969384_26969397	0.385421	Gli3_Zic1	ENSMUST00000091233.7|Adamtsl2|ENSMUSG00000036040.15|ADAMTS-like 2
mm39_v1_chr8_-_41494890_41494903	0.384944	Gli3_Zic1	ENSMUST00000051379.14|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr13_+_54722823_54722828	0.384749	Gli3_Zic1	ENSMUST00000026988.11|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr17_-_24869241_24869301	0.38128	Gli3_Zic1	ENSMUST00000234557.2|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	ENSMUST00000002572.6|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm39_v1_chr3_+_115801106_115801202	0.379816	Gli3_Zic1	ENSMUST00000029575.12|Extl2|ENSMUSG00000027963.15|exostosin-like glycosyltransferase 2	ENSMUST00000106501.8|Extl2|ENSMUSG00000027963.15|exostosin-like glycosyltransferase 2
mm39_v1_chr9_+_50664288_50664384	0.377119	Gli3_Zic1	ENSMUST00000214962.2|Cryab|ENSMUSG00000032060.11|crystallin, alpha B	ENSMUST00000216755.2|Cryab|ENSMUSG00000032060.11|crystallin, alpha B
mm39_v1_chr3_-_95811993_95812006	0.374046	Gli3_Zic1	ENSMUST00000147962.3|Car14|ENSMUSG00000038526.15|carbonic anhydrase 14	ENSMUST00000036181.15|Car14|ENSMUSG00000038526.15|carbonic anhydrase 14
mm39_v1_chr7_+_127078371_127078396	0.369159	Gli3_Zic1	ENSMUST00000205432.3|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr4_-_70453140_70453224	0.368442	Gli3_Zic1	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr17_+_34406523_34406544	0.365251	Gli3_Zic1	ENSMUST00000170086.8|Tap1|ENSMUSG00000037321.18|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm39_v1_chr9_+_50664207_50664252	0.360171	Gli3_Zic1	ENSMUST00000034562.9|Cryab|ENSMUSG00000032060.11|crystallin, alpha B
mm39_v1_chr11_+_69656797_69656854	0.357005	Gli3_Zic1	ENSMUST00000108642.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4	ENSMUST00000156932.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4
mm39_v1_chr13_-_9814979_9815031	0.355281	Gli3_Zic1	ENSMUST00000110634.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr11_-_118139331_118139397	0.355246	Gli3_Zic1	ENSMUST00000017276.14|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr16_-_17711950_17711969	0.355212	Gli3_Zic1	ENSMUST00000155943.9|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2
mm39_v1_chr2_-_181234526_181234596	0.353847	Gli3_Zic1	ENSMUST00000108789.9|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B	ENSMUST00000153998.2|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B
mm39_v1_chr16_+_18595589_18595606	0.352754	Gli3_Zic1	ENSMUST00000043577.3|Cldn5|ENSMUSG00000041378.3|claudin 5
mm39_v1_chr8_-_34614187_34614220	0.348447	Gli3_Zic1	ENSMUST00000033910.9|Leprotl1|ENSMUSG00000031513.9|leptin receptor overlapping transcript-like 1
mm39_v1_chr11_+_70538083_70538120	0.340168	Gli3_Zic1	ENSMUST00000037534.8|Rnf167|ENSMUSG00000040746.16|ring finger protein 167
mm39_v1_chr17_+_35113490_35113554	0.340082	Gli3_Zic1	ENSMUST00000052778.10|Zbtb12|ENSMUSG00000049823.10|zinc finger and BTB domain containing 12
mm39_v1_chr13_+_55097200_55097293	0.339783	Gli3_Zic1	ENSMUST00000026994.14|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A	ENSMUST00000109994.9|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A
mm39_v1_chr4_+_42949814_42949924	0.337908	Gli3_Zic1	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr12_-_80483343_80483379	0.331831	Gli3_Zic1	ENSMUST00000054145.8|Dcaf5|ENSMUSG00000049106.8|DDB1 and CUL4 associated factor 5
mm39_v1_chr2_+_119378178_119378213	0.326687	Gli3_Zic1	ENSMUST00000014221.13|Chp1|ENSMUSG00000014077.14|calcineurin-like EF hand protein 1	ENSMUST00000119172.2|Chp1|ENSMUSG00000014077.14|calcineurin-like EF hand protein 1
mm39_v1_chr17_+_34406762_34406843	0.324352	Gli3_Zic1	ENSMUST00000041633.15|Tap1|ENSMUSG00000037321.18|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm39_v1_chr11_-_118139418_118139433	0.319934	Gli3_Zic1	ENSMUST00000106305.9|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr11_-_69260203_69260242	0.317108	Gli3_Zic1	ENSMUST00000092971.13|Chd3|ENSMUSG00000018474.19|chromodomain helicase DNA binding protein 3	ENSMUST00000108661.8|Chd3|ENSMUSG00000018474.19|chromodomain helicase DNA binding protein 3
mm39_v1_chr1_+_153776323_153776352	0.316775	Gli3_Zic1	ENSMUST00000140685.4|Glul|ENSMUSG00000026473.17|glutamate-ammonia ligase (glutamine synthetase)	ENSMUST00000139476.8|Glul|ENSMUSG00000026473.17|glutamate-ammonia ligase (glutamine synthetase)
mm39_v1_chr7_+_12615091_12615132	0.314722	Gli3_Zic1	ENSMUST00000144578.2|Zfp128|ENSMUSG00000060397.7|zinc finger protein 128
mm39_v1_chr11_+_101066867_101066867	0.309835	Gli3_Zic1	ENSMUST00000103109.4|Cntnap1|ENSMUSG00000017167.7|contactin associated protein-like 1
mm39_v1_chr10_-_128640232_128640274	0.308826	Gli3_Zic1	ENSMUST00000051011.14|Tmem198b|ENSMUSG00000047090.14|transmembrane protein 198b
mm39_v1_chr16_-_30369378_30369413	0.308531	Gli3_Zic1	ENSMUST00000140402.8|Tmem44|ENSMUSG00000022537.19|transmembrane protein 44
mm39_v1_chr11_-_118139312_118139330	0.307797	Gli3_Zic1	ENSMUST00000100181.11|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr11_-_120440519_120440554	0.305697	Gli3_Zic1	ENSMUST00000034913.5|Mcrip1|ENSMUSG00000061111.9|MAPK regulated corepressor interacting protein 1
mm39_v1_chr11_+_95734419_95734470	0.302087	Gli3_Zic1	ENSMUST00000107708.2|Gngt2|ENSMUSG00000038811.14|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
mm39_v1_chr11_+_115921129_115921215	0.301521	Gli3_Zic1	ENSMUST00000021116.12|Unk|ENSMUSG00000020770.14|unkempt family zinc finger	ENSMUST00000106452.2|Unk|ENSMUSG00000020770.14|unkempt family zinc finger
mm39_v1_chr10_-_115151451_115151531	0.298026	Gli3_Zic1	ENSMUST00000020343.9|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family	ENSMUST00000218831.2|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family
mm39_v1_chrX_+_73372664_73372682	0.296673	Gli3_Zic1	ENSMUST00000004326.4|Plxna3|ENSMUSG00000031398.14|plexin A3
mm39_v1_chr7_-_44702269_44702338	0.293003	Gli3_Zic1	ENSMUST00000057293.8|Prr12|ENSMUSG00000046574.9|proline rich 12
mm39_v1_chr3_-_115800989_115801060	0.284595	Gli3_Zic1	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr5_-_125135434_125135475	0.283885	Gli3_Zic1	ENSMUST00000134404.6|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000199561.2|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2
mm39_v1_chr5_-_142803405_142803422	0.282868	Gli3_Zic1	ENSMUST00000151477.8|Tnrc18|ENSMUSG00000039477.17|trinucleotide repeat containing 18
mm39_v1_chr11_+_78136569_78136646	0.281921	Gli3_Zic1	ENSMUST00000002133.9|Sdf2|ENSMUSG00000002064.11|stromal cell derived factor 2
mm39_v1_chr4_+_12140263_12140317	0.281372	Gli3_Zic1	ENSMUST00000050069.9|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1	ENSMUST00000069128.8|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1
mm39_v1_chr15_-_99717956_99718037	0.279396	Gli3_Zic1	ENSMUST00000109024.9|Lima1|ENSMUSG00000023022.15|LIM domain and actin binding 1
mm39_v1_chr17_-_24424456_24424536	0.276782	Gli3_Zic1	ENSMUST00000201583.2|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000202925.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000167791.9|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201960.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000040474.11|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201089.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201301.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201805.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000168410.9|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000097376.10|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24
mm39_v1_chr10_+_128542120_128542133	0.27606	Gli3_Zic1	ENSMUST00000054125.9|Pmel|ENSMUSG00000025359.11|premelanosome protein
mm39_v1_chr17_+_35354172_35354221	0.272872	Gli3_Zic1	ENSMUST00000172571.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173491.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr17_+_15230597_15230597	0.270726	Gli3_Zic1	ENSMUST00000232446.2|Gm3435|ENSMUSG00000116895.2|predicted gene 3435
mm39_v1_chr17_+_35354655_35354774	0.269839	Gli3_Zic1	ENSMUST00000174478.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000174281.9|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173550.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr9_+_106247943_106248054	0.269386	Gli3_Zic1	ENSMUST00000173748.2|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr10_-_78005560_78005627	0.266949	Gli3_Zic1	ENSMUST00000219120.2|Gatd3a|ENSMUSG00000053329.8|glutamine amidotransferase like class 1 domain containing 3A	ENSMUST00000001242.9|Gatd3a|ENSMUSG00000053329.8|glutamine amidotransferase like class 1 domain containing 3A
mm39_v1_chr2_-_160714904_160714929	0.26582	Gli3_Zic1	ENSMUST00000109460.8|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3	ENSMUST00000127201.2|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr3_+_136376440_136376531	0.265484	Gli3_Zic1	ENSMUST00000056758.9|Ppp3ca|ENSMUSG00000028161.18|protein phosphatase 3, catalytic subunit, alpha isoform
mm39_v1_chr17_-_23818458_23818464	0.263737	Gli3_Zic1	ENSMUST00000057029.5|Zfp13|ENSMUSG00000062012.15|zinc finger protein 13
mm39_v1_chr6_-_35285045_35285071	0.261177	Gli3_Zic1	ENSMUST00000031868.5|Slc13a4|ENSMUSG00000029843.5|solute carrier family 13 (sodium/sulfate symporters), member 4
mm39_v1_chr1_+_131755715_131755757	0.260848	Gli3_Zic1	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr5_-_134485081_134485118	0.260537	Gli3_Zic1	ENSMUST00000111244.5|Gtf2ird1|ENSMUSG00000023079.15|general transcription factor II I repeat domain-containing 1
mm39_v1_chr3_+_145464413_145464451	0.258897	Gli3_Zic1	ENSMUST00000029845.15|Ddah1|ENSMUSG00000028194.16|dimethylarginine dimethylaminohydrolase 1
mm39_v1_chr6_+_17463748_17463808	0.253282	Gli3_Zic1	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr16_+_20335712_20335823	0.252432	Gli3_Zic1	ENSMUST00000003318.13|Dvl3|ENSMUSG00000003233.13|dishevelled segment polarity protein 3	ENSMUST00000171572.9|Dvl3|ENSMUSG00000003233.13|dishevelled segment polarity protein 3
mm39_v1_chr6_+_48372771_48372807	0.248648	Gli3_Zic1	ENSMUST00000114572.9|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr9_+_60701749_60701907	0.247723	Gli3_Zic1	ENSMUST00000214354.2|Uaca|ENSMUSG00000034485.11|uveal autoantigen with coiled-coil domains and ankyrin repeats	ENSMUST00000050183.7|Uaca|ENSMUSG00000034485.11|uveal autoantigen with coiled-coil domains and ankyrin repeats	ENSMUST00000217656.2|Uaca|ENSMUSG00000034485.11|uveal autoantigen with coiled-coil domains and ankyrin repeats
mm39_v1_chr8_+_55407872_55407889	0.247641	Gli3_Zic1	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr1_+_133278248_133278248	0.242698	Gli3_Zic1	ENSMUST00000094556.3|Ren1|ENSMUSG00000070645.6|renin 1 structural
mm39_v1_chr3_+_97066065_97066137	0.241042	Gli3_Zic1	ENSMUST00000090759.5|Acp6|ENSMUSG00000028093.16|acid phosphatase 6, lysophosphatidic
mm39_v1_chr1_+_55127110_55127291	0.240641	Gli3_Zic1	ENSMUST00000075242.7|Hspe1|ENSMUSG00000073676.5|heat shock protein 1 (chaperonin 10)
mm39_v1_chr3_-_104419128_104419250	0.23389	Gli3_Zic1	ENSMUST00000199070.5|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2	ENSMUST00000046316.11|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2	ENSMUST00000198332.2|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2
mm39_v1_chr13_-_9815276_9815306	0.233792	Gli3_Zic1	ENSMUST00000130151.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr9_+_31297475_31297531	0.233594	Gli3_Zic1	ENSMUST00000086167.12|Nfrkb|ENSMUSG00000042185.15|nuclear factor related to kappa B binding protein
mm39_v1_chr11_+_95734028_95734144	0.232787	Gli3_Zic1	ENSMUST00000107709.8|Gngt2|ENSMUSG00000038811.14|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
mm39_v1_chr2_+_35172392_35172454	0.232514	Gli3_Zic1	ENSMUST00000028239.8|Gsn|ENSMUSG00000026879.15|gelsolin
mm39_v1_chr7_-_19398930_19398958	0.231603	Gli3_Zic1	ENSMUST00000055242.11|Clptm1|ENSMUSG00000002981.11|cleft lip and palate associated transmembrane protein 1
mm39_v1_chr7_-_66339319_66339351	0.230911	Gli3_Zic1	ENSMUST00000124899.8|Asb7|ENSMUSG00000030509.18|ankyrin repeat and SOCS box-containing 7
mm39_v1_chr11_+_69891398_69891465	0.230166	Gli3_Zic1	ENSMUST00000019362.15|Dvl2|ENSMUSG00000020888.17|dishevelled segment polarity protein 2	ENSMUST00000190940.2|Dvl2|ENSMUSG00000020888.17|dishevelled segment polarity protein 2
mm39_v1_chr6_-_24664959_24665039	0.228658	Gli3_Zic1	ENSMUST00000041737.8|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor	ENSMUST00000031695.15|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor
mm39_v1_chr7_+_127368981_127369001	0.228022	Gli3_Zic1	ENSMUST00000118865.8|Orai3|ENSMUSG00000043964.15|ORAI calcium release-activated calcium modulator 3	ENSMUST00000061587.13|Orai3|ENSMUSG00000043964.15|ORAI calcium release-activated calcium modulator 3	ENSMUST00000121504.2|Orai3|ENSMUSG00000043964.15|ORAI calcium release-activated calcium modulator 3
mm39_v1_chr2_+_84867783_84867874	0.227012	Gli3_Zic1	ENSMUST00000168266.8|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1	ENSMUST00000130729.3|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr14_+_52222283_52222428	0.224425	Gli3_Zic1	ENSMUST00000093813.12|Arhgef40|ENSMUSG00000004562.17|Rho guanine nucleotide exchange factor (GEF) 40	ENSMUST00000100639.11|Arhgef40|ENSMUSG00000004562.17|Rho guanine nucleotide exchange factor (GEF) 40	ENSMUST00000182909.8|Arhgef40|ENSMUSG00000004562.17|Rho guanine nucleotide exchange factor (GEF) 40	ENSMUST00000182760.8|Arhgef40|ENSMUSG00000004562.17|Rho guanine nucleotide exchange factor (GEF) 40	ENSMUST00000182061.8|Arhgef40|ENSMUSG00000004562.17|Rho guanine nucleotide exchange factor (GEF) 40	ENSMUST00000182193.2|Arhgef40|ENSMUSG00000004562.17|Rho guanine nucleotide exchange factor (GEF) 40
mm39_v1_chr11_+_98851238_98851312	0.223998	Gli3_Zic1	ENSMUST00000107473.3|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha
mm39_v1_chr5_-_116729870_116729889	0.223662	Gli3_Zic1	ENSMUST00000076124.7|Srrm4|ENSMUSG00000063919.12|serine/arginine repetitive matrix 4
mm39_v1_chrX_-_73436609_73436675	0.21881	Gli3_Zic1	ENSMUST00000015427.13|Fam3a|ENSMUSG00000031399.16|family with sequence similarity 3, member A
mm39_v1_chr8_-_35432783_35432869	0.218029	Gli3_Zic1	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm39_v1_chr4_-_16163615_16163647	0.217758	Gli3_Zic1	ENSMUST00000037035.12|Ripk2|ENSMUSG00000041135.16|receptor (TNFRSF)-interacting serine-threonine kinase 2
mm39_v1_chr10_+_22034460_22034491	0.214057	Gli3_Zic1	ENSMUST00000181645.8|Raet1e|ENSMUSG00000053219.16|retinoic acid early transcript 1E	ENSMUST00000105522.9|H60b|ENSMUSG00000075297.11|histocompatibility 60b
mm39_v1_chr6_-_52168675_52168733	0.213426	Gli3_Zic1	ENSMUST00000101395.3|Hoxa4|ENSMUSG00000000942.11|homeobox A4
mm39_v1_chr6_+_48372586_48372623	0.211836	Gli3_Zic1	ENSMUST00000077093.7|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr5_-_5315968_5316292	0.210939	Gli3_Zic1	ENSMUST00000115451.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000115452.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000131392.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14
mm39_v1_chr5_+_3393893_3393945	0.207567	Gli3_Zic1	ENSMUST00000165117.8|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6	ENSMUST00000197385.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr4_-_108637979_108638000	0.207529	Gli3_Zic1	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr7_+_26958150_26958240	0.207424	Gli3_Zic1	ENSMUST00000079258.7|Numbl|ENSMUSG00000063160.13|numb-like
mm39_v1_chr13_+_54722833_54722906	0.207076	Gli3_Zic1	ENSMUST00000156024.2|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr17_+_35354430_35354543	0.203539	Gli3_Zic1	ENSMUST00000173535.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173952.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr6_-_113411718_113411731	0.202816	Gli3_Zic1	ENSMUST00000113091.8|Cidec|ENSMUSG00000030278.12|cell death-inducing DFFA-like effector c
mm39_v1_chr15_+_25984445_25984459	0.202291	Gli3_Zic1	ENSMUST00000061875.8|Zfp622|ENSMUSG00000052253.7|zinc finger protein 622
mm39_v1_chr3_-_92393193_92393208	0.200529	Gli3_Zic1	ENSMUST00000054599.8|Sprr1a|ENSMUSG00000050359.8|small proline-rich protein 1A
mm39_v1_chr11_+_79230618_79230719	0.19906	Gli3_Zic1	ENSMUST00000219057.2|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000108251.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000071325.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1
mm39_v1_chr19_-_6134703_6134723	0.195366	Gli3_Zic1	ENSMUST00000161548.8|Zfpl1|ENSMUSG00000024792.10|zinc finger like protein 1
mm39_v1_chr4_+_144619647_144619673	0.190868	Gli3_Zic1	ENSMUST00000154208.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3
mm39_v1_chr10_+_106306122_106306228	0.188537	Gli3_Zic1	ENSMUST00000029404.17|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	ENSMUST00000217854.2|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm39_v1_chr9_+_108394005_108394168	0.188446	Gli3_Zic1	ENSMUST00000195563.6|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1
mm39_v1_chr9_-_108455899_108455938	0.187293	Gli3_Zic1	ENSMUST00000068700.7|Wdr6|ENSMUSG00000066357.7|WD repeat domain 6
mm39_v1_chr8_+_120173458_120173505	0.18402	Gli3_Zic1	ENSMUST00000098363.10|Necab2|ENSMUSG00000031837.15|N-terminal EF-hand calcium binding protein 2
mm39_v1_chr8_+_11778039_11778105	0.183845	Gli3_Zic1	ENSMUST00000110909.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr2_+_181162326_181162364	0.183781	Gli3_Zic1	ENSMUST00000108797.8|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr12_+_76451177_76451201	0.181945	Gli3_Zic1	ENSMUST00000219555.2|Hspa2|ENSMUSG00000059970.8|heat shock protein 2
mm39_v1_chr16_+_38383182_38383275	0.181588	Gli3_Zic1	ENSMUST00000163948.8|Tmem39a|ENSMUSG00000002845.15|transmembrane protein 39a
mm39_v1_chr4_-_108637700_108637957	0.181489	Gli3_Zic1	ENSMUST00000106658.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr18_-_39062201_39062222	0.180127	Gli3_Zic1	ENSMUST00000134864.2|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1
mm39_v1_chr11_+_4085233_4085282	0.179983	Gli3_Zic1	ENSMUST00000124670.2|Rnf215|ENSMUSG00000003581.15|ring finger protein 215
mm39_v1_chr2_-_156977032_156977185	0.178283	Gli3_Zic1	ENSMUST00000139263.8|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000109549.3|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000088523.11|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000057725.10|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1
mm39_v1_chr8_-_96161466_96161497	0.171596	Gli3_Zic1	ENSMUST00000213086.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20	ENSMUST00000034249.8|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chr11_-_76289888_76290010	0.170338	Gli3_Zic1	ENSMUST00000021204.4|Nxn|ENSMUSG00000020844.7|nucleoredoxin
mm39_v1_chr17_+_35354148_35354159	0.170161	Gli3_Zic1	ENSMUST00000166426.9|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000025250.14|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr9_-_99450948_99450961	0.170129	Gli3_Zic1	ENSMUST00000035043.12|Armc8|ENSMUSG00000032468.12|armadillo repeat containing 8
mm39_v1_chr14_+_101967343_101967394	0.169658	Gli3_Zic1	ENSMUST00000100337.10|Lmo7|ENSMUSG00000033060.17|LIM domain only 7
mm39_v1_chr5_-_32903615_32903657	0.166783	Gli3_Zic1	ENSMUST00000120591.8|Pisd|ENSMUSG00000023452.20|phosphatidylserine decarboxylase
mm39_v1_chr1_+_87522267_87522278	0.165349	Gli3_Zic1	ENSMUST00000165109.2|Neu2|ENSMUSG00000079434.9|neuraminidase 2	ENSMUST00000070898.6|Neu2|ENSMUSG00000079434.9|neuraminidase 2
mm39_v1_chr19_-_5135510_5135559	0.16428	Gli3_Zic1	ENSMUST00000140389.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000151413.2|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000077066.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A
mm39_v1_chr2_-_77000936_77000990	0.161064	Gli3_Zic1	ENSMUST00000164114.9|Ccdc141|ENSMUSG00000044033.17|coiled-coil domain containing 141	ENSMUST00000049544.14|Ccdc141|ENSMUSG00000044033.17|coiled-coil domain containing 141
mm39_v1_chr7_+_18659787_18659826	0.160404	Gli3_Zic1	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr4_+_144619397_144619432	0.158593	Gli3_Zic1	ENSMUST00000105744.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3	ENSMUST00000171001.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3
mm39_v1_chr15_-_99670479_99670490	0.158279	Gli3_Zic1	ENSMUST00000023762.13|Cers5|ENSMUSG00000023021.16|ceramide synthase 5
mm39_v1_chr16_+_38383154_38383181	0.157508	Gli3_Zic1	ENSMUST00000171687.8|Tmem39a|ENSMUSG00000002845.15|transmembrane protein 39a	ENSMUST00000002924.15|Tmem39a|ENSMUSG00000002845.15|transmembrane protein 39a
mm39_v1_chr12_-_70274433_70274457	0.156549	Gli3_Zic1	ENSMUST00000071250.13|Pygl|ENSMUSG00000021069.18|liver glycogen phosphorylase
mm39_v1_chr11_+_98644340_98644412	0.156181	Gli3_Zic1	ENSMUST00000124072.2|Thra|ENSMUSG00000058756.14|thyroid hormone receptor alpha
mm39_v1_chrX_+_160500051_160500068	0.155755	Gli3_Zic1	ENSMUST00000112338.2|Rai2|ENSMUSG00000043518.8|retinoic acid induced 2
mm39_v1_chr15_-_95426419_95426523	0.154123	Gli3_Zic1	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr2_+_58991352_58991398	0.153676	Gli3_Zic1	ENSMUST00000037903.15|Pkp4|ENSMUSG00000026991.21|plakophilin 4
mm39_v1_chr16_-_43836681_43836799	0.152779	Gli3_Zic1	ENSMUST00000036174.10|Gramd1c|ENSMUSG00000036292.15|GRAM domain containing 1C
mm39_v1_chr4_+_144619696_144619716	0.150005	Gli3_Zic1	ENSMUST00000142808.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3
mm39_v1_chr14_-_32907023_32907057	0.149258	Gli3_Zic1	ENSMUST00000130509.10|Wdfy4|ENSMUSG00000051506.18|WD repeat and FYVE domain containing 4	ENSMUST00000061753.15|Wdfy4|ENSMUSG00000051506.18|WD repeat and FYVE domain containing 4
mm39_v1_chr17_-_34247016_34247050	0.14877	Gli3_Zic1	ENSMUST00000236627.2|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000237759.2|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000045467.14|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000114303.4|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6
mm39_v1_chr11_+_59839032_59839090	0.147829	Gli3_Zic1	ENSMUST00000081980.7|Med9|ENSMUSG00000061650.7|mediator complex subunit 9
mm39_v1_chr4_+_132738787_132738817	0.147147	Gli3_Zic1	ENSMUST00000105915.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1	ENSMUST00000105916.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1
mm39_v1_chr11_-_23720953_23721028	0.146806	Gli3_Zic1	ENSMUST00000102864.5|Rel|ENSMUSG00000020275.10|reticuloendotheliosis oncogene
mm39_v1_chr12_+_76450941_76451038	0.144789	Gli3_Zic1	ENSMUST00000080449.7|Hspa2|ENSMUSG00000059970.8|heat shock protein 2
mm39_v1_chr9_+_100525637_100525691	0.144477	Gli3_Zic1	ENSMUST00000041418.13|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr18_+_65022035_65022105	0.143612	Gli3_Zic1	ENSMUST00000224385.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000163516.9|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr1_+_65350416_65350416	0.141345	Gli3_Zic1	ENSMUST00000027083.7|Pth2r|ENSMUSG00000025946.14|parathyroid hormone 2 receptor
mm39_v1_chr7_+_65343156_65343272	0.140992	Gli3_Zic1	ENSMUST00000032726.14|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000107495.5|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000143508.3|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000129166.3|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206517.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206837.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206628.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3	ENSMUST00000206361.2|Tm2d3|ENSMUSG00000078681.11|TM2 domain containing 3
mm39_v1_chr15_+_78783867_78783975	0.138878	Gli3_Zic1	ENSMUST00000134703.8|Gm49510|ENSMUSG00000116069.2|predicted gene, 49510	ENSMUST00000061239.14|Sh3bp1|ENSMUSG00000022436.17|SH3-domain binding protein 1	ENSMUST00000109698.9|Sh3bp1|ENSMUSG00000022436.17|SH3-domain binding protein 1
mm39_v1_chr18_-_34139972_34140042	0.137365	Gli3_Zic1	ENSMUST00000025234.7|Epb41l4a|ENSMUSG00000024376.8|erythrocyte membrane protein band 4.1 like 4a
mm39_v1_chr6_+_47854138_47854138	0.136164	Gli3_Zic1	ENSMUST00000061890.8|Zfp282|ENSMUSG00000025821.10|zinc finger protein 282
mm39_v1_chr3_+_135144304_135144335	0.13555	Gli3_Zic1	ENSMUST00000198685.5|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3	ENSMUST00000197859.5|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr16_-_64672011_64672117	0.134935	Gli3_Zic1	ENSMUST00000207826.2|Zfp654|ENSMUSG00000047141.6|zinc finger protein 654
mm39_v1_chr5_-_137784943_137784977	0.134917	Gli3_Zic1	ENSMUST00000132726.2|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr19_-_6899173_6899208	0.134731	Gli3_Zic1	ENSMUST00000025906.12|Esrra|ENSMUSG00000024955.16|estrogen related receptor, alpha	ENSMUST00000239322.2|Esrra|ENSMUSG00000024955.16|estrogen related receptor, alpha
mm39_v1_chr3_+_135144287_135144301	0.134218	Gli3_Zic1	ENSMUST00000196591.5|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr9_-_50663571_50663638	0.133383	Gli3_Zic1	ENSMUST00000042790.5|Hspb2|ENSMUSG00000038086.5|heat shock protein 2
mm39_v1_chr7_+_24967094_24967148	0.133048	Gli3_Zic1	ENSMUST00000169266.8|Cic|ENSMUSG00000005442.14|capicua transcriptional repressor
mm39_v1_chr11_+_101221895_101221895	0.132862	Gli3_Zic1	ENSMUST00000017316.7|Aoc3|ENSMUSG00000019326.15|amine oxidase, copper containing 3
mm39_v1_chr4_-_119272667_119272685	0.132664	Gli3_Zic1	ENSMUST00000238609.2|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30
mm39_v1_chr15_-_97742134_97742199	0.132002	Gli3_Zic1	ENSMUST00000119670.8|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7	ENSMUST00000116409.9|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7
mm39_v1_chr9_-_79700660_79700712	0.129099	Gli3_Zic1	ENSMUST00000034878.12|Tmem30a|ENSMUSG00000032328.13|transmembrane protein 30A
mm39_v1_chrX_+_160500623_160500653	0.128065	Gli3_Zic1	ENSMUST00000061514.8|Rai2|ENSMUSG00000043518.8|retinoic acid induced 2
mm39_v1_chr8_+_127790626_127790666	0.127306	Gli3_Zic1	ENSMUST00000162309.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator
mm39_v1_chr19_-_6899121_6899171	0.126509	Gli3_Zic1	ENSMUST00000173635.2|Esrra|ENSMUSG00000024955.16|estrogen related receptor, alpha
mm39_v1_chr8_-_96161414_96161458	0.125592	Gli3_Zic1	ENSMUST00000211908.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chr4_-_126096376_126096510	0.124935	Gli3_Zic1	ENSMUST00000106142.8|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3	ENSMUST00000169403.8|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3	ENSMUST00000130334.2|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3
mm39_v1_chr17_-_56916771_56916819	0.124353	Gli3_Zic1	ENSMUST00000052832.6|Micos13|ENSMUSG00000049760.7|mitochondrial contact site and cristae organizing system subunit 13
mm39_v1_chr2_-_160714749_160714863	0.12405	Gli3_Zic1	ENSMUST00000176141.8|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr5_-_137784912_137784930	0.123966	Gli3_Zic1	ENSMUST00000031740.16|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr9_+_108394269_108394318	0.123097	Gli3_Zic1	ENSMUST00000195513.6|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1	ENSMUST00000193258.6|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1	ENSMUST00000112155.9|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1	ENSMUST00000006851.15|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1
mm39_v1_chr5_-_138980690_138980792	0.121686	Gli3_Zic1	ENSMUST00000046901.14|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha	ENSMUST00000076095.14|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha
mm39_v1_chr9_+_100525501_100525594	0.120158	Gli3_Zic1	ENSMUST00000146312.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1	ENSMUST00000129269.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr3_+_79793237_79793309	0.118403	Gli3_Zic1	ENSMUST00000029567.9|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B
mm39_v1_chr15_+_99476935_99476940	0.117572	Gli3_Zic1	ENSMUST00000023752.6|Aqp2|ENSMUSG00000023013.6|aquaporin 2
mm39_v1_chr7_+_66339637_66339728	0.116833	Gli3_Zic1	ENSMUST00000153007.2|Lins1|ENSMUSG00000053091.17|lines homolog 1	ENSMUST00000121777.9|Lins1|ENSMUSG00000053091.17|lines homolog 1	ENSMUST00000150071.8|Lins1|ENSMUSG00000053091.17|lines homolog 1	ENSMUST00000077967.13|Lins1|ENSMUSG00000053091.17|lines homolog 1
mm39_v1_chrX_-_73436293_73436405	0.116242	Gli3_Zic1	ENSMUST00000114138.8|Fam3a|ENSMUSG00000031399.16|family with sequence similarity 3, member A
mm39_v1_chr15_+_103411461_103411473	0.116229	Gli3_Zic1	ENSMUST00000023132.5|Pde1b|ENSMUSG00000022489.7|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm39_v1_chr12_+_24548568_24548618	0.112866	Gli3_Zic1	ENSMUST00000222710.2|Taf1b|ENSMUSG00000059669.9|TATA-box binding protein associated factor, RNA polymerase I, B
mm39_v1_chr8_-_125624424_125624496	0.112831	Gli3_Zic1	ENSMUST00000098312.4|Exoc8|ENSMUSG00000074030.4|exocyst complex component 8
mm39_v1_chrM_+_7006_7021	0.110837	Gli3_Zic1	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr11_+_103540391_103540400	0.110682	Gli3_Zic1	ENSMUST00000057870.4|Rprml|ENSMUSG00000046215.4|reprimo-like
mm39_v1_chr6_+_124986224_124986282	0.10887	Gli3_Zic1	ENSMUST00000112427.8|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384
mm39_v1_chr6_-_35516700_35516823	0.108678	Gli3_Zic1	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chr10_-_52258170_52258237	0.107886	Gli3_Zic1	ENSMUST00000020008.10|Gopc|ENSMUSG00000019861.16|golgi associated PDZ and coiled-coil motif containing	ENSMUST00000105475.9|Gopc|ENSMUSG00000019861.16|golgi associated PDZ and coiled-coil motif containing
mm39_v1_chr16_+_20335825_20335881	0.107275	Gli3_Zic1	ENSMUST00000171774.2|Dvl3|ENSMUSG00000003233.13|dishevelled segment polarity protein 3
mm39_v1_chr11_-_116249883_116249930	0.105099	Gli3_Zic1	ENSMUST00000149147.8|Rnf157|ENSMUSG00000052949.15|ring finger protein 157
mm39_v1_chr3_+_135144481_135144541	0.104998	Gli3_Zic1	ENSMUST00000199582.5|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr16_+_20551853_20551910	0.104213	Gli3_Zic1	ENSMUST00000115423.8|Chrd|ENSMUSG00000006958.15|chordin	ENSMUST00000007171.13|Chrd|ENSMUSG00000006958.15|chordin	ENSMUST00000232646.2|Chrd|ENSMUSG00000006958.15|chordin
mm39_v1_chr6_+_86172372_86172404	0.103071	Gli3_Zic1	ENSMUST00000192058.4|Tgfa|ENSMUSG00000029999.15|transforming growth factor alpha
mm39_v1_chr6_+_90346547_90346633	0.100033	Gli3_Zic1	ENSMUST00000045740.8|Zxdc|ENSMUSG00000034430.17|ZXD family zinc finger C	ENSMUST00000203493.2|Zxdc|ENSMUSG00000034430.17|ZXD family zinc finger C
mm39_v1_chr14_-_57049173_57049173	0.0997792	Gli3_Zic1	ENSMUST00000039812.16|Zmym5|ENSMUSG00000040123.18|zinc finger, MYM-type 5	ENSMUST00000111285.9|Zmym5|ENSMUSG00000040123.18|zinc finger, MYM-type 5
mm39_v1_chr15_-_95426108_95426160	0.0984014	Gli3_Zic1	ENSMUST00000075275.3|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr3_+_135144202_135144241	0.0973763	Gli3_Zic1	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr1_+_33947250_33947306	0.0972921	Gli3_Zic1	ENSMUST00000183034.5|Dst|ENSMUSG00000026131.21|dystonin
mm39_v1_chr16_+_44544634_44544689	0.0969525	Gli3_Zic1	ENSMUST00000048788.14|Nepro|ENSMUSG00000036208.14|nucleolus and neural progenitor protein
mm39_v1_chr7_+_73040908_73041044	0.0968758	Gli3_Zic1	ENSMUST00000128471.2|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000139780.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr5_-_108280350_108280404	0.0953261	Gli3_Zic1	ENSMUST00000119784.2|Tmed5|ENSMUSG00000063406.12|transmembrane p24 trafficking protein 5	ENSMUST00000117759.2|Tmed5|ENSMUSG00000063406.12|transmembrane p24 trafficking protein 5
mm39_v1_chr1_-_133834790_133834910	0.0949932	Gli3_Zic1	ENSMUST00000149380.8|Optc|ENSMUSG00000010311.16|opticin	ENSMUST00000124051.9|Optc|ENSMUSG00000010311.16|opticin
mm39_v1_chr8_+_91635192_91635248	0.0945557	Gli3_Zic1	ENSMUST00000211403.2|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr10_+_26648473_26648512	0.0942736	Gli3_Zic1	ENSMUST00000039557.9|Arhgap18|ENSMUSG00000039031.17|Rho GTPase activating protein 18
mm39_v1_chr5_+_64387742_64387792	0.0933472	Gli3_Zic1	ENSMUST00000119756.6|Tbc1d1|ENSMUSG00000029174.19|TBC1 domain family, member 1
mm39_v1_chr15_+_40518414_40518450	0.0922695	Gli3_Zic1	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr3_+_95532282_95532332	0.0911447	Gli3_Zic1	ENSMUST00000058230.13|Ensa|ENSMUSG00000038619.13|endosulfine alpha	ENSMUST00000037983.6|Ensa|ENSMUSG00000038619.13|endosulfine alpha
mm39_v1_chr15_-_97742045_97742130	0.0901408	Gli3_Zic1	ENSMUST00000120683.8|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7
mm39_v1_chr2_+_164721277_164721318	0.0896846	Gli3_Zic1	ENSMUST00000041643.5|Pcif1|ENSMUSG00000039849.7|phosphorylated CTD interacting factor 1
mm39_v1_chr15_+_34083450_34083468	0.0887775	Gli3_Zic1	ENSMUST00000163333.9|Mtdh|ENSMUSG00000022255.17|metadherin	ENSMUST00000170050.8|Mtdh|ENSMUSG00000022255.17|metadherin	ENSMUST00000170553.8|Mtdh|ENSMUSG00000022255.17|metadherin
mm39_v1_chr15_-_99670276_99670343	0.088213	Gli3_Zic1	ENSMUST00000109035.11|Cers5|ENSMUSG00000023021.16|ceramide synthase 5
mm39_v1_chr2_-_168072295_168072304	0.086761	Gli3_Zic1	ENSMUST00000154111.8|Dpm1|ENSMUSG00000078919.11|dolichol-phosphate (beta-D) mannosyltransferase 1
mm39_v1_chr8_+_27937691_27937709	0.0847846	Gli3_Zic1	ENSMUST00000081321.5|Poteg|ENSMUSG00000063932.6|POTE ankyrin domain family, member G
mm39_v1_chr14_+_84680993_84681009	0.0834125	Gli3_Zic1	ENSMUST00000071370.7|Pcdh17|ENSMUSG00000035566.8|protocadherin 17
mm39_v1_chr9_-_79700789_79700801	0.0828347	Gli3_Zic1	ENSMUST00000120690.2|Tmem30a|ENSMUSG00000032328.13|transmembrane protein 30A
mm39_v1_chr4_-_137493785_137493814	0.0811391	Gli3_Zic1	ENSMUST00000139951.8|Alpl|ENSMUSG00000028766.11|alkaline phosphatase, liver/bone/kidney
mm39_v1_chr16_+_22926162_22926229	0.0794904	Gli3_Zic1	ENSMUST00000023599.13|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000168891.8|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2
mm39_v1_chr16_-_22630327_22630327	0.0787673	Gli3_Zic1	ENSMUST00000040592.6|Crygs|ENSMUSG00000033501.6|crystallin, gamma S
mm39_v1_chr2_+_181162278_181162324	0.0778573	Gli3_Zic1	ENSMUST00000072334.12|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr14_-_100521888_100521934	0.0770153	Gli3_Zic1	ENSMUST00000226774.2|Klf12|ENSMUSG00000072294.6|Kruppel-like factor 12
mm39_v1_chr19_-_40260286_40260309	0.0754236	Gli3_Zic1	ENSMUST00000182432.2|Pdlim1|ENSMUSG00000055044.13|PDZ and LIM domain 1 (elfin)
mm39_v1_chr6_+_21985902_21985971	0.075182	Gli3_Zic1	ENSMUST00000115383.9|Cped1|ENSMUSG00000062980.16|cadherin-like and PC-esterase domain containing 1
mm39_v1_chr4_-_62126662_62126724	0.0742877	Gli3_Zic1	ENSMUST00000222050.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37	ENSMUST00000068822.4|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr6_+_124986078_124986142	0.0739302	Gli3_Zic1	ENSMUST00000054553.11|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384
mm39_v1_chr7_+_79836581_79836651	0.0711208	Gli3_Zic1	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr11_+_77873535_77873649	0.0708237	Gli3_Zic1	ENSMUST00000108360.8|Phf12|ENSMUSG00000037791.16|PHD finger protein 12	ENSMUST00000049167.14|Phf12|ENSMUSG00000037791.16|PHD finger protein 12
mm39_v1_chr5_-_137531413_137531460	0.0701955	Gli3_Zic1	ENSMUST00000168746.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr15_-_89294434_89294475	0.0699025	Gli3_Zic1	ENSMUST00000109314.9|Syce3|ENSMUSG00000078938.10|synaptonemal complex central element protein 3
mm39_v1_chr13_-_95170755_95170796	0.0683513	Gli3_Zic1	ENSMUST00000162670.8|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B
mm39_v1_chr7_+_29483383_29483512	0.0682527	Gli3_Zic1	ENSMUST00000032803.12|Zfp30|ENSMUSG00000047473.15|zinc finger protein 30	ENSMUST00000122387.2|Zfp30|ENSMUSG00000047473.15|zinc finger protein 30
mm39_v1_chr15_+_78784043_78784103	0.0677046	Gli3_Zic1	ENSMUST00000001226.11|Sh3bp1|ENSMUSG00000022436.17|SH3-domain binding protein 1
mm39_v1_chr18_+_21094477_21094529	0.0666573	Gli3_Zic1	ENSMUST00000234316.2|Rnf125|ENSMUSG00000033107.7|ring finger protein 125
mm39_v1_chr16_-_4376471_4376647	0.0653137	Gli3_Zic1	ENSMUST00000230875.2|Tfap4|ENSMUSG00000005718.9|transcription factor AP4
mm39_v1_chr10_+_79852487_79852511	0.0651605	Gli3_Zic1	ENSMUST00000099501.10|Arhgap45|ENSMUSG00000035697.15|Rho GTPase activating protein 45
mm39_v1_chr7_+_81824544_81824602	0.0648712	Gli3_Zic1	ENSMUST00000032874.14|Sh3gl3|ENSMUSG00000030638.14|SH3-domain GRB2-like 3
mm39_v1_chr11_+_3239868_3239993	0.0644511	Gli3_Zic1	ENSMUST00000094471.10|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1	ENSMUST00000110043.8|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1
mm39_v1_chr19_+_8779903_8779922	0.0644457	Gli3_Zic1	ENSMUST00000172175.3|Zbtb3|ENSMUSG00000071661.8|zinc finger and BTB domain containing 3
mm39_v1_chr18_+_65021974_65022000	0.0605388	Gli3_Zic1	ENSMUST00000225261.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr9_+_100525807_100525823	0.0597089	Gli3_Zic1	ENSMUST00000133388.2|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr7_+_79896121_79896177	0.0587706	Gli3_Zic1	ENSMUST00000058266.9|Ttll13|ENSMUSG00000045467.14|tubulin tyrosine ligase-like family, member 13
mm39_v1_chr12_+_4284009_4284067	0.0557728	Gli3_Zic1	ENSMUST00000179139.3|Ptrhd1|ENSMUSG00000096199.3|peptidyl-tRNA hydrolase domain containing 1
mm39_v1_chr19_+_55304703_55304799	0.0544455	Gli3_Zic1	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr7_-_141925947_141926030	0.0539862	Gli3_Zic1	ENSMUST00000084412.6|Ifitm10|ENSMUSG00000045777.15|interferon induced transmembrane protein 10
mm39_v1_chr2_-_30691709_30691755	0.0534833	Gli3_Zic1	ENSMUST00000050003.9|1700001O22Rik|ENSMUSG00000044320.15|RIKEN cDNA 1700001O22 gene
mm39_v1_chr4_+_42950367_42950476	0.0528435	Gli3_Zic1	ENSMUST00000084662.12|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr18_-_82710859_82711058	0.0525453	Gli3_Zic1	ENSMUST00000182122.8|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236	ENSMUST00000171071.9|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236
mm39_v1_chr2_+_31462780_31462841	0.05247	Gli3_Zic1	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chr1_+_17672117_17672137	0.0515791	Gli3_Zic1	ENSMUST00000088476.4|Pi15|ENSMUSG00000067780.4|peptidase inhibitor 15
mm39_v1_chr16_+_16887991_16888079	0.0513826	Gli3_Zic1	ENSMUST00000232258.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr2_+_119629995_119630052	0.0508652	Gli3_Zic1	ENSMUST00000028763.10|Tyro3|ENSMUSG00000027298.18|TYRO3 protein tyrosine kinase 3
mm39_v1_chr11_+_72909811_72909870	0.0496951	Gli3_Zic1	ENSMUST00000092937.13|Camkk1|ENSMUSG00000020785.18|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm39_v1_chr8_+_77628916_77629104	0.0478071	Gli3_Zic1	ENSMUST00000109912.8|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2	ENSMUST00000128862.2|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2	ENSMUST00000109911.8|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2
mm39_v1_chr12_+_33003882_33003890	0.046141	Gli3_Zic1	ENSMUST00000076698.13|Sypl|ENSMUSG00000020570.16|synaptophysin-like protein
mm39_v1_chr8_+_3543131_3543212	0.0459077	Gli3_Zic1	ENSMUST00000061508.8|Zfp358|ENSMUSG00000047264.9|zinc finger protein 358	ENSMUST00000207318.2|Zfp358|ENSMUSG00000047264.9|zinc finger protein 358
mm39_v1_chr5_-_32903687_32903755	0.0452985	Gli3_Zic1	ENSMUST00000135248.2|Pisd|ENSMUSG00000023452.20|phosphatidylserine decarboxylase
mm39_v1_chr6_+_124986193_124986216	0.0430208	Gli3_Zic1	ENSMUST00000112428.8|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384
mm39_v1_chrX_-_73009933_73009982	0.0402182	Gli3_Zic1	ENSMUST00000114372.3|Hcfc1|ENSMUSG00000031386.15|host cell factor C1	ENSMUST00000033761.13|Hcfc1|ENSMUSG00000031386.15|host cell factor C1
mm39_v1_chr13_-_114595475_114595493	0.0386212	Gli3_Zic1	ENSMUST00000022287.8|Fst|ENSMUSG00000021765.10|follistatin	ENSMUST00000223640.3|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr1_-_133834711_133834752	0.0380929	Gli3_Zic1	ENSMUST00000126123.2|Optc|ENSMUSG00000010311.16|opticin
mm39_v1_chr7_+_127084283_127084393	0.0374998	Gli3_Zic1	ENSMUST00000048896.8|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr11_+_115310963_115311008	0.0374675	Gli3_Zic1	ENSMUST00000106533.8|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2	ENSMUST00000123345.2|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2
mm39_v1_chr1_-_51955054_51955118	0.036828	Gli3_Zic1	ENSMUST00000018561.14|Myo1b|ENSMUSG00000018417.15|myosin IB	ENSMUST00000114537.9|Myo1b|ENSMUSG00000018417.15|myosin IB
mm39_v1_chr1_-_106641940_106642062	0.0367962	Gli3_Zic1	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr2_+_26220403_26220453	0.0366984	Gli3_Zic1	ENSMUST00000114134.9|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)	ENSMUST00000127453.2|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm39_v1_chr15_+_99290832_99290903	0.0365642	Gli3_Zic1	ENSMUST00000160635.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161250.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000229392.2|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161778.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr3_+_31204069_31204106	0.0335999	Gli3_Zic1	ENSMUST00000046174.8|Cldn11|ENSMUSG00000037625.8|claudin 11
mm39_v1_chr1_-_33946802_33946897	0.0335755	Gli3_Zic1	ENSMUST00000115161.8|Bend6|ENSMUSG00000042182.17|BEN domain containing 6	ENSMUST00000129464.8|Bend6|ENSMUSG00000042182.17|BEN domain containing 6	ENSMUST00000062289.11|Bend6|ENSMUSG00000042182.17|BEN domain containing 6
mm39_v1_chr1_-_51955126_51955230	0.0322009	Gli3_Zic1	ENSMUST00000046390.14|Myo1b|ENSMUSG00000018417.15|myosin IB
mm39_v1_chr1_-_154975376_154975382	0.0319998	Gli3_Zic1	ENSMUST00000055322.6|Ier5|ENSMUSG00000056708.6|immediate early response 5
mm39_v1_chr18_-_43506277_43506339	0.0297295	Gli3_Zic1	ENSMUST00000118043.8|Dpysl3|ENSMUSG00000024501.21|dihydropyrimidinase-like 3
mm39_v1_chr4_-_62126598_62126660	0.0283807	Gli3_Zic1	ENSMUST00000221329.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37	ENSMUST00000129511.3|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr11_+_115310885_115310954	0.0282995	Gli3_Zic1	ENSMUST00000103035.10|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2
mm39_v1_chr7_-_24997291_24997383	0.0279473	Gli3_Zic1	ENSMUST00000148150.8|Pafah1b3|ENSMUSG00000005447.13|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	ENSMUST00000155118.2|Pafah1b3|ENSMUSG00000005447.13|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm39_v1_chr19_+_4015900_4015900	0.0278377	Gli3_Zic1	ENSMUST00000025794.7|Aldh3b3|ENSMUSG00000037263.14|aldehyde dehydrogenase 3 family, member B3
mm39_v1_chr17_+_24888641_24888703	0.0257435	Gli3_Zic1	ENSMUST00000234956.2|Zfp598|ENSMUSG00000041130.11|zinc finger protein 598
mm39_v1_chr2_+_76200299_76200386	0.0257412	Gli3_Zic1	ENSMUST00000046389.5|Rbm45|ENSMUSG00000042369.9|RNA binding motif protein 45
mm39_v1_chr10_-_18891095_18891158	0.024151	Gli3_Zic1	ENSMUST00000019997.11|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr16_+_17712061_17712106	0.0239043	Gli3_Zic1	ENSMUST00000046937.4|Tssk1|ENSMUSG00000041566.4|testis-specific serine kinase 1
mm39_v1_chr13_-_99653045_99653092	0.0225939	Gli3_Zic1	ENSMUST00000064762.6|Map1b|ENSMUSG00000052727.7|microtubule-associated protein 1B
mm39_v1_chr12_+_59113659_59113670	0.020266	Gli3_Zic1	ENSMUST00000021381.6|Pnn|ENSMUSG00000020994.6|pinin
mm39_v1_chr11_-_58221145_58221182	0.0181926	Gli3_Zic1	ENSMUST00000186859.2|Zfp672|ENSMUSG00000049755.15|zinc finger protein 672	ENSMUST00000065533.3|Zfp672|ENSMUSG00000049755.15|zinc finger protein 672
mm39_v1_chr3_-_30563919_30563971	0.0178739	Gli3_Zic1	ENSMUST00000172697.8|Mecom|ENSMUSG00000027684.17|MDS1 and EVI1 complex locus
mm39_v1_chr2_-_90410922_90410991	0.0170061	Gli3_Zic1	ENSMUST00000168621.3|Ptprj|ENSMUSG00000025314.17|protein tyrosine phosphatase, receptor type, J
mm39_v1_chr17_+_24888704_24888727	0.0169522	Gli3_Zic1	ENSMUST00000047179.7|Zfp598|ENSMUSG00000041130.11|zinc finger protein 598
mm39_v1_chr19_+_27299939_27299991	0.0161926	Gli3_Zic1	ENSMUST00000056708.4|Kcnv2|ENSMUSG00000047298.4|potassium channel, subfamily V, member 2
mm39_v1_chr17_+_37356872_37356972	0.0161781	Gli3_Zic1	ENSMUST00000174456.8|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr1_+_172302925_172302951	0.0157793	Gli3_Zic1	ENSMUST00000027830.5|Slamf9|ENSMUSG00000026548.5|SLAM family member 9
mm39_v1_chr6_-_52222776_52222806	0.0153427	Gli3_Zic1	ENSMUST00000048026.10|Hoxa11|ENSMUSG00000038210.11|homeobox A11
mm39_v1_chr4_+_74170165_74170248	0.0145745	Gli3_Zic1	ENSMUST00000030102.12|Kdm4c|ENSMUSG00000028397.14|lysine (K)-specific demethylase 4C
mm39_v1_chr19_-_21418215_21418238	0.0145662	Gli3_Zic1	ENSMUST00000237823.2|Gda|ENSMUSG00000058624.14|guanine deaminase
mm39_v1_chr17_-_88372315_88372456	0.0140883	Gli3_Zic1	ENSMUST00000235056.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000130379.9|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr5_-_146900548_146900617	0.013179	Gli3_Zic1	ENSMUST00000125217.2|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000110564.8|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000066675.10|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000016654.9|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000110566.2|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000140526.2|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3
mm39_v1_chr13_+_74498430_74498487	0.0116449	Gli3_Zic1	ENSMUST00000160021.8|Ccdc127|ENSMUSG00000021578.18|coiled-coil domain containing 127	ENSMUST00000162672.8|Ccdc127|ENSMUSG00000021578.18|coiled-coil domain containing 127	ENSMUST00000162376.2|Ccdc127|ENSMUSG00000021578.18|coiled-coil domain containing 127
mm39_v1_chr16_-_19703014_19703035	0.0115574	Gli3_Zic1	ENSMUST00000100083.5|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene	ENSMUST00000231564.2|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene
mm39_v1_chr10_+_79613083_79613116	0.0115295	Gli3_Zic1	ENSMUST00000020575.5|Fstl3|ENSMUSG00000020325.11|follistatin-like 3
mm39_v1_chr8_-_13940234_13940300	0.01152	Gli3_Zic1	ENSMUST00000033839.9|Coprs|ENSMUSG00000031458.9|coordinator of PRMT5, differentiation stimulator
mm39_v1_chr15_-_99670751_99670786	0.0107249	Gli3_Zic1	ENSMUST00000175876.8|Cers5|ENSMUSG00000023021.16|ceramide synthase 5
mm39_v1_chr19_-_5610628_5610674	0.0102605	Gli3_Zic1	ENSMUST00000025861.3|Ovol1|ENSMUSG00000024922.3|ovo like zinc finger 1
mm39_v1_chr4_+_54947976_54948054	0.0101902	Gli3_Zic1	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr17_+_37361523_37361566	0.0101595	Gli3_Zic1	ENSMUST00000172792.8|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1	ENSMUST00000174347.2|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr7_-_114235506_114235592	0.00978146	Gli3_Zic1	ENSMUST00000205714.2|Calca|ENSMUSG00000030669.14|calcitonin/calcitonin-related polypeptide, alpha	ENSMUST00000206853.2|Calca|ENSMUSG00000030669.14|calcitonin/calcitonin-related polypeptide, alpha	ENSMUST00000205933.2|Calca|ENSMUSG00000030669.14|calcitonin/calcitonin-related polypeptide, alpha	ENSMUST00000206156.2|Calca|ENSMUSG00000030669.14|calcitonin/calcitonin-related polypeptide, alpha	ENSMUST00000032907.9|Calca|ENSMUSG00000030669.14|calcitonin/calcitonin-related polypeptide, alpha	ENSMUST00000032906.11|Calca|ENSMUSG00000030669.14|calcitonin/calcitonin-related polypeptide, alpha
mm39_v1_chr14_-_57048921_57048921	0.00944221	Gli3_Zic1	ENSMUST00000173954.3|Zmym5|ENSMUSG00000040123.18|zinc finger, MYM-type 5
mm39_v1_chr2_+_20727274_20727436	0.00917084	Gli3_Zic1	ENSMUST00000114607.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr1_-_153775944_153775957	0.00898265	Gli3_Zic1	ENSMUST00000123490.2|Teddm2|ENSMUSG00000045968.8|transmembrane epididymal family member 2
mm39_v1_chr5_-_123859153_123859175	0.00737261	Gli3_Zic1	ENSMUST00000196282.5|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr13_-_114595122_114595272	0.0073617	Gli3_Zic1	ENSMUST00000231252.2|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr15_-_89263466_89263504	0.00674377	Gli3_Zic1	ENSMUST00000228111.2|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chr19_+_45003304_45003445	0.00571826	Gli3_Zic1	ENSMUST00000039016.14|Lzts2|ENSMUSG00000035342.15|leucine zipper, putative tumor suppressor 2
mm39_v1_chr16_+_64672334_64672437	0.00491784	Gli3_Zic1	ENSMUST00000067744.8|Cggbp1|ENSMUSG00000054604.8|CGG triplet repeat binding protein 1
mm39_v1_chrX_-_135939007_135939058	0.00485644	Gli3_Zic1	ENSMUST00000113070.9|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53	ENSMUST00000113069.9|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53
mm39_v1_chr18_-_39062514_39062532	0.00450038	Gli3_Zic1	ENSMUST00000235922.2|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1
mm39_v1_chr19_+_5742880_5742923	0.00409085	Gli3_Zic1	ENSMUST00000235661.2|Map3k11|ENSMUSG00000004054.10|mitogen-activated protein kinase kinase kinase 11
mm39_v1_chr10_+_79852750_79852812	0.00217505	Gli3_Zic1	ENSMUST00000105373.8|Arhgap45|ENSMUSG00000035697.15|Rho GTPase activating protein 45
mm39_v1_chr11_-_106240215_106240215	0.00216043	Gli3_Zic1	ENSMUST00000021056.8|Scn4a|ENSMUSG00000001027.8|sodium channel, voltage-gated, type IV, alpha
mm39_v1_chr13_+_74269554_74269634	0.00214602	Gli3_Zic1	ENSMUST00000036208.7|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3	ENSMUST00000225423.2|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3	ENSMUST00000221703.2|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3
mm39_v1_chr2_-_13798843_13798875	0.00200207	Gli3_Zic1	ENSMUST00000003509.10|St8sia6|ENSMUSG00000003418.12|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
mm39_v1_chr7_-_118042772_118042792	0.0017769	Gli3_Zic1	ENSMUST00000081574.8|Syt17|ENSMUSG00000058420.9|synaptotagmin XVII
mm39_v1_chr4_-_126096551_126096554	0.000804985	Gli3_Zic1	ENSMUST00000080919.12|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3
