mm39_v1_chr3_-_90603013_90603030	9.85541	Cdx2	ENSMUST00000069960.12|S100a9|ENSMUSG00000056071.13|S100 calcium binding protein A9 (calgranulin B)	ENSMUST00000117167.2|S100a9|ENSMUSG00000056071.13|S100 calcium binding protein A9 (calgranulin B)
mm39_v1_chr1_-_45542442_45542442	6.71863	Cdx2	ENSMUST00000086430.5|Col5a2|ENSMUSG00000026042.17|collagen, type V, alpha 2
mm39_v1_chr7_+_130633776_130633806	6.17522	Cdx2	ENSMUST00000084509.7|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000213064.3|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000208311.4|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1
mm39_v1_chr8_-_106660470_106660494	5.70553	Cdx2	ENSMUST00000034368.8|Ctrl|ENSMUSG00000031896.8|chymotrypsin-like
mm39_v1_chr11_-_99328969_99328985	5.61911	Cdx2	ENSMUST00000017743.3|Krt20|ENSMUSG00000035775.3|keratin 20
mm39_v1_chr14_+_80237691_80237749	4.81831	Cdx2	ENSMUST00000228749.2|Olfm4|ENSMUSG00000022026.8|olfactomedin 4	ENSMUST00000088735.4|Olfm4|ENSMUSG00000022026.8|olfactomedin 4
mm39_v1_chr3_-_14843512_14843526	4.06038	Cdx2	ENSMUST00000094365.11|Car1|ENSMUSG00000027556.16|carbonic anhydrase 1
mm39_v1_chr17_-_31348576_31348620	3.99956	Cdx2	ENSMUST00000024827.5|Tff3|ENSMUSG00000024029.5|trefoil factor 3, intestinal
mm39_v1_chr6_+_38895902_38895964	2.92126	Cdx2	ENSMUST00000003017.13|Tbxas1|ENSMUSG00000029925.14|thromboxane A synthase 1, platelet
mm39_v1_chr4_-_63965161_63965252	2.89239	Cdx2	ENSMUST00000107377.10|Tnc|ENSMUSG00000028364.16|tenascin C
mm39_v1_chr6_-_49191891_49191959	2.85615	Cdx2	ENSMUST00000031838.9|Igf2bp3|ENSMUSG00000029814.11|insulin-like growth factor 2 mRNA binding protein 3
mm39_v1_chr3_+_57332735_57332873	2.72597	Cdx2	ENSMUST00000029377.8|Tm4sf4|ENSMUSG00000027801.8|transmembrane 4 superfamily member 4
mm39_v1_chr7_+_140343652_140343758	2.58345	Cdx2	ENSMUST00000026552.9|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000209253.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000210235.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1
mm39_v1_chr3_-_10273628_10273646	2.46911	Cdx2	ENSMUST00000029041.6|Fabp4|ENSMUSG00000062515.4|fatty acid binding protein 4, adipocyte
mm39_v1_chr9_+_95519654_95519685	2.37157	Cdx2	ENSMUST00000015498.9|Pcolce2|ENSMUSG00000015354.9|procollagen C-endopeptidase enhancer 2
mm39_v1_chr9_-_65330231_65330243	2.30615	Cdx2	ENSMUST00000065894.7|Slc51b|ENSMUSG00000053862.7|solute carrier family 51, beta subunit
mm39_v1_chrX_+_162873183_162873197	2.21572	Cdx2	ENSMUST00000015545.10|Cltrn|ENSMUSG00000015401.13|collectrin, amino acid transport regulator
mm39_v1_chrX_+_95498965_95499017	1.68959	Cdx2	ENSMUST00000033553.14|Heph|ENSMUSG00000031209.15|hephaestin
mm39_v1_chr1_+_139429430_139429466	1.5212	Cdx2	ENSMUST00000027615.7|F13b|ENSMUSG00000026368.7|coagulation factor XIII, beta subunit
mm39_v1_chr17_-_71305003_71305049	1.43517	Cdx2	ENSMUST00000024846.13|Myl12a|ENSMUSG00000024048.16|myosin, light chain 12A, regulatory, non-sarcomeric	ENSMUST00000232766.2|Myl12a|ENSMUSG00000024048.16|myosin, light chain 12A, regulatory, non-sarcomeric
mm39_v1_chr10_+_97400990_97400990	1.31609	Cdx2	ENSMUST00000038160.6|Lum|ENSMUSG00000036446.6|lumican
mm39_v1_chr10_+_119655294_119655430	1.26371	Cdx2	ENSMUST00000105262.9|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000147454.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000138410.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144825.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000148954.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144959.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1
mm39_v1_chr8_-_34333573_34333699	0.998165	Cdx2	ENSMUST00000183062.2|Rbpms|ENSMUSG00000031586.18|RNA binding protein gene with multiple splicing
mm39_v1_chr7_+_89814713_89814756	0.967595	Cdx2	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr10_-_35587888_35587888	0.966067	Cdx2	ENSMUST00000080898.4|Amd2|ENSMUSG00000063953.4|S-adenosylmethionine decarboxylase 2
mm39_v1_chr6_+_71176811_71176872	0.907306	Cdx2	ENSMUST00000067492.8|Fabp1|ENSMUSG00000054422.8|fatty acid binding protein 1, liver
mm39_v1_chr14_-_54923517_54923625	0.862875	Cdx2	ENSMUST00000125265.2|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1
mm39_v1_chr12_-_102844537_102844709	0.789608	Cdx2	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr11_-_99134885_99134964	0.692788	Cdx2	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chrX_+_72818003_72818018	0.689791	Cdx2	ENSMUST00000002081.6|Srpk3|ENSMUSG00000002007.6|serine/arginine-rich protein specific kinase 3
mm39_v1_chr3_-_92393193_92393208	0.657515	Cdx2	ENSMUST00000054599.8|Sprr1a|ENSMUSG00000050359.8|small proline-rich protein 1A
mm39_v1_chr6_-_122317484_122317520	0.59298	Cdx2	ENSMUST00000112600.9|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr5_-_135773047_135773138	0.585114	Cdx2	ENSMUST00000153399.2|Tmem120a|ENSMUSG00000039886.9|transmembrane protein 120A
mm39_v1_chr11_-_76386190_76386282	0.539912	Cdx2	ENSMUST00000108408.9|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr2_-_51039112_51039127	0.516535	Cdx2	ENSMUST00000154545.2|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3	ENSMUST00000017288.9|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3
mm39_v1_chrX_+_162923474_162923614	0.423054	Cdx2	ENSMUST00000073973.11|Ace2|ENSMUSG00000015405.16|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm39_v1_chr11_+_96214078_96214152	0.363889	Cdx2	ENSMUST00000093944.10|Hoxb3|ENSMUSG00000048763.12|homeobox B3
mm39_v1_chr4_-_9643636_9643717	0.326707	Cdx2	ENSMUST00000108333.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000108334.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000108335.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000152526.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000103004.10|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase
mm39_v1_chr17_+_80614795_80614854	0.306556	Cdx2	ENSMUST00000223878.2|Arhgef33|ENSMUSG00000054901.8|Rho guanine nucleotide exchange factor (GEF) 33	ENSMUST00000068175.6|Arhgef33|ENSMUSG00000054901.8|Rho guanine nucleotide exchange factor (GEF) 33	ENSMUST00000224391.2|Arhgef33|ENSMUSG00000054901.8|Rho guanine nucleotide exchange factor (GEF) 33
mm39_v1_chr19_-_47680528_47680535	0.296591	Cdx2	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr6_+_17491231_17491242	0.279338	Cdx2	ENSMUST00000080469.12|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr18_+_65715156_65715346	0.251441	Cdx2	ENSMUST00000237553.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000237712.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000182684.8|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532
mm39_v1_chr15_-_101389384_101389400	0.224233	Cdx2	ENSMUST00000023718.9|Krt83|ENSMUSG00000067613.7|keratin 83
mm39_v1_chrM_+_7758_7775	0.223265	Cdx2	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr17_-_71153283_71153321	0.211068	Cdx2	ENSMUST00000156484.2|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr8_+_95113066_95113135	0.209638	Cdx2	ENSMUST00000161576.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	ENSMUST00000034220.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
mm39_v1_chrM_+_7779_7927	0.168257	Cdx2	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr18_+_65715460_65715684	0.162257	Cdx2	ENSMUST00000169679.8|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000183326.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532
mm39_v1_chr19_-_34856853_34856864	0.14478	Cdx2	ENSMUST00000036584.13|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chr14_+_54923655_54923695	0.10651	Cdx2	ENSMUST00000038539.8|1700123O20Rik|ENSMUSG00000040822.8|RIKEN cDNA 1700123O20 gene	ENSMUST00000228027.2|1700123O20Rik|ENSMUSG00000040822.8|RIKEN cDNA 1700123O20 gene
mm39_v1_chr5_+_13448833_13448964	0.0217389	Cdx2	ENSMUST00000137798.10|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chrX_+_13499008_13499040	0.00809508	Cdx2	ENSMUST00000096492.4|Gpr34|ENSMUSG00000040229.12|G protein-coupled receptor 34
