mm39_v1_chr5_+_90638580_90638627	17.7151	Brca1	ENSMUST00000042755.7|Afp|ENSMUSG00000054932.7|alpha fetoprotein	ENSMUST00000200693.2|Afp|ENSMUSG00000054932.7|alpha fetoprotein
mm39_v1_chr17_+_41121979_41122056	12.5766	Brca1	ENSMUST00000024721.8|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein	ENSMUST00000233740.2|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein
mm39_v1_chr11_+_87684548_87684632	11.2616	Brca1	ENSMUST00000143021.9|Mpo|ENSMUSG00000009350.14|myeloperoxidase
mm39_v1_chr7_+_100143250_100143304	7.54613	Brca1	ENSMUST00000153287.8|Ucp2|ENSMUSG00000033685.14|uncoupling protein 2 (mitochondrial, proton carrier)
mm39_v1_chr8_+_85696453_85696490	5.53397	Brca1	ENSMUST00000125893.8|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2
mm39_v1_chr15_-_36609812_36609912	5.49472	Brca1	ENSMUST00000226496.2|Pabpc1|ENSMUSG00000022283.16|poly(A) binding protein, cytoplasmic 1
mm39_v1_chr3_-_100396635_100396652	5.48735	Brca1	ENSMUST00000061455.9|Tent5c|ENSMUSG00000044468.15|terminal nucleotidyltransferase 5C
mm39_v1_chr11_-_99328969_99328985	5.43014	Brca1	ENSMUST00000017743.3|Krt20|ENSMUSG00000035775.3|keratin 20
mm39_v1_chr8_+_85696396_85696449	5.33728	Brca1	ENSMUST00000109733.8|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2
mm39_v1_chr11_-_106205320_106205403	4.96367	Brca1	ENSMUST00000167143.2|Cd79b|ENSMUSG00000040592.12|CD79B antigen
mm39_v1_chr7_+_27147403_27147462	4.65099	Brca1	ENSMUST00000037399.16|Blvrb|ENSMUSG00000040466.17|biliverdin reductase B (flavin reductase (NADPH))	ENSMUST00000108358.8|Blvrb|ENSMUSG00000040466.17|biliverdin reductase B (flavin reductase (NADPH))
mm39_v1_chr12_+_83567240_83567258	4.64984	Brca1	ENSMUST00000021645.9|Dcaf4|ENSMUSG00000021222.10|DDB1 and CUL4 associated factor 4
mm39_v1_chr9_+_96140781_96140838	4.64956	Brca1	ENSMUST00000190104.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000179416.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000189606.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr1_-_171108754_171108766	4.59848	Brca1	ENSMUST00000073120.11|Ppox|ENSMUSG00000062729.13|protoporphyrinogen oxidase
mm39_v1_chr19_-_10181243_10181533	4.56003	Brca1	ENSMUST00000142241.2|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000116542.9|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000025651.6|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000156291.2|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1
mm39_v1_chr2_+_164790139_164790165	4.55078	Brca1	ENSMUST00000017881.3|Mmp9|ENSMUSG00000017737.3|matrix metallopeptidase 9
mm39_v1_chr6_-_125168453_125168474	4.16955	Brca1	ENSMUST00000189959.2|Ncapd2|ENSMUSG00000038252.14|non-SMC condensin I complex, subunit D2
mm39_v1_chr17_+_6697511_6697604	4.00394	Brca1	ENSMUST00000179569.3|Dynlt1b|ENSMUSG00000096255.3|dynein light chain Tctex-type 1B
mm39_v1_chrX_+_134894573_134894573	4.00023	Brca1	ENSMUST00000058119.9|Arxes2|ENSMUSG00000048040.9|adipocyte-related X-chromosome expressed sequence 2
mm39_v1_chr13_-_100912308_100912407	3.91845	Brca1	ENSMUST00000075550.4|Cenph|ENSMUSG00000045273.9|centromere protein H
mm39_v1_chr15_+_79578141_79578186	3.89999	Brca1	ENSMUST00000230898.2|Gtpbp1|ENSMUSG00000042535.10|GTP binding protein 1	ENSMUST00000229046.2|Gtpbp1|ENSMUSG00000042535.10|GTP binding protein 1
mm39_v1_chr5_+_136982100_136982260	3.72828	Brca1	ENSMUST00000111094.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1	ENSMUST00000111097.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1
mm39_v1_chr5_+_146769915_146770022	3.59395	Brca1	ENSMUST00000075453.9|Rpl21|ENSMUSG00000041453.13|ribosomal protein L21	ENSMUST00000099272.3|Rpl21|ENSMUSG00000041453.13|ribosomal protein L21
mm39_v1_chr6_-_122778598_122778618	3.51441	Brca1	ENSMUST00000165884.8|Slc2a3|ENSMUSG00000003153.11|solute carrier family 2 (facilitated glucose transporter), member 3
mm39_v1_chr19_-_6191440_6191578	3.49322	Brca1	ENSMUST00000025893.7|Arl2|ENSMUSG00000024944.7|ADP-ribosylation factor-like 2
mm39_v1_chr5_+_146769700_146769756	3.48913	Brca1	ENSMUST00000035983.12|Rpl21|ENSMUSG00000041453.13|ribosomal protein L21
mm39_v1_chrX_-_149372840_149372858	3.28453	Brca1	ENSMUST00000112725.8|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2	ENSMUST00000112720.8|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2
mm39_v1_chr7_-_55669702_55669702	3.27504	Brca1	ENSMUST00000052204.6|Nipa1|ENSMUSG00000047037.6|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
mm39_v1_chr8_+_85598734_85598741	3.25832	Brca1	ENSMUST00000170296.2|Syce2|ENSMUSG00000003824.13|synaptonemal complex central element protein 2	ENSMUST00000136026.8|Syce2|ENSMUSG00000003824.13|synaptonemal complex central element protein 2
mm39_v1_chr13_+_28441511_28441583	3.13759	Brca1	ENSMUST00000223428.2|Rps18-ps5|ENSMUSG00000113061.2|ribosomal protein S18, pseudogene 5
mm39_v1_chr4_-_133600308_133600379	3.13407	Brca1	ENSMUST00000137486.3|Rps6ka1|ENSMUSG00000003644.18|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chrX_-_100266032_100266169	3.0476	Brca1	ENSMUST00000120389.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000156473.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000077876.4|Snx12|ENSMUSG00000046032.17|sorting nexin 12
mm39_v1_chr5_+_137756407_137756461	2.97828	Brca1	ENSMUST00000141733.8|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4	ENSMUST00000110985.2|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4
mm39_v1_chr5_-_148988110_148988126	2.8362	Brca1	ENSMUST00000110505.8|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1
mm39_v1_chr1_-_169358912_169359011	2.82804	Brca1	ENSMUST00000192248.2|Nuf2|ENSMUSG00000026683.15|NUF2, NDC80 kinetochore complex component	ENSMUST00000028000.13|Nuf2|ENSMUSG00000026683.15|NUF2, NDC80 kinetochore complex component
mm39_v1_chr11_-_84710276_84710341	2.77378	Brca1	ENSMUST00000018549.8|Mrm1|ENSMUSG00000018405.8|mitochondrial rRNA methyltransferase 1
mm39_v1_chr13_-_97897139_97897142	2.76486	Brca1	ENSMUST00000074072.5|Rps18-ps6|ENSMUSG00000069117.5|ribosomal protein S18, pseudogene 6
mm39_v1_chr9_+_96140750_96140764	2.73289	Brca1	ENSMUST00000186609.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr5_-_73413888_73413979	2.58333	Brca1	ENSMUST00000101127.12|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chr12_-_69205882_69205960	2.53887	Brca1	ENSMUST00000037023.9|Rps29|ENSMUSG00000034892.9|ribosomal protein S29
mm39_v1_chr9_+_119956755_119956910	2.51155	Brca1	ENSMUST00000035105.7|Rpsa|ENSMUSG00000032518.7|ribosomal protein SA	ENSMUST00000217317.2|Rpsa|ENSMUSG00000032518.7|ribosomal protein SA
mm39_v1_chr18_-_43610829_43610868	2.42748	Brca1	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr19_-_32443978_32443978	2.40874	Brca1	ENSMUST00000078034.5|Rpl9-ps6|ENSMUSG00000062456.5|ribosomal protein L9, pseudogene 6
mm39_v1_chr2_-_152673585_152673648	2.37195	Brca1	ENSMUST00000156688.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000007803.12|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr9_+_64718708_64718719	2.3401	Brca1	ENSMUST00000213926.2|Dennd4a|ENSMUSG00000053641.10|DENN/MADD domain containing 4A
mm39_v1_chr13_+_100788087_100788109	2.22709	Brca1	ENSMUST00000190165.7|Taf9|ENSMUSG00000052293.15|TATA-box binding protein associated factor 9	ENSMUST00000185767.7|Taf9|ENSMUSG00000052293.15|TATA-box binding protein associated factor 9
mm39_v1_chr13_+_55517545_55517589	2.21074	Brca1	ENSMUST00000063771.14|Rgs14|ENSMUSG00000052087.15|regulator of G-protein signaling 14
mm39_v1_chr15_-_76524097_76524158	2.1652	Brca1	ENSMUST00000168185.8|Tonsl|ENSMUSG00000059323.15|tonsoku-like, DNA repair protein
mm39_v1_chr17_+_47922497_47922544	2.12184	Brca1	ENSMUST00000024778.3|Med20|ENSMUSG00000092558.4|mediator complex subunit 20
mm39_v1_chr9_+_64718596_64718622	2.01493	Brca1	ENSMUST00000038890.6|Dennd4a|ENSMUSG00000053641.10|DENN/MADD domain containing 4A
mm39_v1_chr13_+_100787841_100787905	2.00935	Brca1	ENSMUST00000084721.8|Ak6|ENSMUSG00000078941.10|adenylate kinase 6	ENSMUST00000190729.2|Ak6|ENSMUSG00000078941.10|adenylate kinase 6
mm39_v1_chr4_+_134847949_134847973	1.978	Brca1	ENSMUST00000056977.14|Runx3|ENSMUSG00000070691.11|runt related transcription factor 3
mm39_v1_chr2_-_155424576_155424587	1.91978	Brca1	ENSMUST00000126322.8|Gss|ENSMUSG00000027610.18|glutathione synthetase
mm39_v1_chr15_+_81900570_81900716	1.9142	Brca1	ENSMUST00000069530.13|Xrcc6|ENSMUSG00000022471.15|X-ray repair complementing defective repair in Chinese hamster cells 6	ENSMUST00000168581.8|Xrcc6|ENSMUSG00000022471.15|X-ray repair complementing defective repair in Chinese hamster cells 6	ENSMUST00000164779.2|Xrcc6|ENSMUSG00000022471.15|X-ray repair complementing defective repair in Chinese hamster cells 6
mm39_v1_chr17_-_47922374_47922471	1.90025	Brca1	ENSMUST00000024783.9|Bysl|ENSMUSG00000023988.9|bystin-like
mm39_v1_chr12_+_83567303_83567408	1.76613	Brca1	ENSMUST00000222502.2|Dcaf4|ENSMUSG00000021222.10|DDB1 and CUL4 associated factor 4
mm39_v1_chr3_-_102111892_102112009	1.75326	Brca1	ENSMUST00000029453.13|Vangl1|ENSMUSG00000027860.16|VANGL planar cell polarity 1
mm39_v1_chr19_+_53298906_53298983	1.71954	Brca1	ENSMUST00000003870.15|Mxi1|ENSMUSG00000025025.15|MAX interactor 1, dimerization protein
mm39_v1_chr19_+_10582987_10583008	1.66475	Brca1	ENSMUST00000237337.2|Ddb1|ENSMUSG00000024740.11|damage specific DNA binding protein 1
mm39_v1_chr4_-_41464816_41464903	1.66355	Brca1	ENSMUST00000108055.9|Kif24|ENSMUSG00000028438.17|kinesin family member 24	ENSMUST00000154535.8|Kif24|ENSMUSG00000028438.17|kinesin family member 24	ENSMUST00000030148.6|Kif24|ENSMUSG00000028438.17|kinesin family member 24
mm39_v1_chr7_+_101546059_101546168	1.55813	Brca1	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr7_+_27252658_27252727	1.51462	Brca1	ENSMUST00000067386.14|2310022A10Rik|ENSMUSG00000049643.16|RIKEN cDNA 2310022A10 gene	ENSMUST00000191126.7|2310022A10Rik|ENSMUSG00000049643.16|RIKEN cDNA 2310022A10 gene	ENSMUST00000187960.7|2310022A10Rik|ENSMUSG00000049643.16|RIKEN cDNA 2310022A10 gene
mm39_v1_chr7_-_27252543_27252675	1.4673	Brca1	ENSMUST00000127240.8|Pld3|ENSMUSG00000003363.16|phospholipase D family, member 3	ENSMUST00000117095.8|Pld3|ENSMUSG00000003363.16|phospholipase D family, member 3	ENSMUST00000117611.8|Pld3|ENSMUSG00000003363.16|phospholipase D family, member 3
mm39_v1_chr15_+_102368510_102368560	1.44719	Brca1	ENSMUST00000164688.2|Prr13|ENSMUSG00000023048.14|proline rich 13
mm39_v1_chr17_+_36134398_36134441	1.41631	Brca1	ENSMUST00000173493.8|Flot1|ENSMUSG00000059714.14|flotillin 1	ENSMUST00000173147.8|Flot1|ENSMUSG00000059714.14|flotillin 1
mm39_v1_chr11_-_104441218_104441347	1.41385	Brca1	ENSMUST00000106962.9|Cdc27|ENSMUSG00000020687.14|cell division cycle 27	ENSMUST00000106961.2|Cdc27|ENSMUSG00000020687.14|cell division cycle 27	ENSMUST00000093923.9|Cdc27|ENSMUSG00000020687.14|cell division cycle 27
mm39_v1_chr17_-_33904345_33904385	1.41113	Brca1	ENSMUST00000234474.2|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M	ENSMUST00000139302.8|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M	ENSMUST00000114385.9|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M
mm39_v1_chr5_+_64969679_64969727	1.4062	Brca1	ENSMUST00000166409.6|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)	ENSMUST00000197879.2|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr18_+_36926929_36926992	1.40529	Brca1	ENSMUST00000001419.10|Zmat2|ENSMUSG00000001383.10|zinc finger, matrin type 2
mm39_v1_chr6_-_142418801_142418841	1.38579	Brca1	ENSMUST00000032371.8|Gys2|ENSMUSG00000030244.8|glycogen synthase 2
mm39_v1_chr6_-_120334382_120334396	1.3606	Brca1	ENSMUST00000032283.12|Ccdc77|ENSMUSG00000030177.15|coiled-coil domain containing 77
mm39_v1_chr10_+_127512933_127512968	1.3562	Brca1	ENSMUST00000118612.8|Nemp1|ENSMUSG00000040195.12|nuclear envelope integral membrane protein 1	ENSMUST00000048099.5|Nemp1|ENSMUSG00000040195.12|nuclear envelope integral membrane protein 1
mm39_v1_chr17_+_36152383_36152407	1.31403	Brca1	ENSMUST00000082337.13|Mdc1|ENSMUSG00000061607.16|mediator of DNA damage checkpoint 1
mm39_v1_chr2_+_29533799_29533827	1.29472	Brca1	ENSMUST00000238899.2|Rapgef1|ENSMUSG00000039844.21|Rap guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr7_+_101545547_101545638	1.24687	Brca1	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr17_-_33904386_33904400	1.24258	Brca1	ENSMUST00000087582.13|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M
mm39_v1_chr3_+_87837566_87837656	1.24083	Brca1	ENSMUST00000055984.7|Isg20l2|ENSMUSG00000048039.9|interferon stimulated exonuclease gene 20-like 2
mm39_v1_chr11_+_104441489_104441525	1.12932	Brca1	ENSMUST00000018800.9|Myl4|ENSMUSG00000061086.13|myosin, light polypeptide 4
mm39_v1_chr6_-_136758716_136758804	1.07694	Brca1	ENSMUST00000078095.11|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c	ENSMUST00000032338.10|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c
mm39_v1_chr15_+_102392586_102392627	1.06473	Brca1	ENSMUST00000229061.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr6_-_122317484_122317520	1.06317	Brca1	ENSMUST00000112600.9|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr18_-_47466378_47466439	1.06105	Brca1	ENSMUST00000126684.2|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000156422.8|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr6_-_120334400_120334450	1.03407	Brca1	ENSMUST00000112703.8|Ccdc77|ENSMUSG00000030177.15|coiled-coil domain containing 77
mm39_v1_chr14_-_61283911_61283939	1.02325	Brca1	ENSMUST00000111234.10|Tnfrsf19|ENSMUSG00000060548.14|tumor necrosis factor receptor superfamily, member 19	ENSMUST00000224371.2|Tnfrsf19|ENSMUSG00000060548.14|tumor necrosis factor receptor superfamily, member 19
mm39_v1_chr11_+_78717398_78717444	1.00929	Brca1	ENSMUST00000147875.9|Lyrm9|ENSMUSG00000072640.12|LYR motif containing 9	ENSMUST00000141321.2|Lyrm9|ENSMUSG00000072640.12|LYR motif containing 9
mm39_v1_chr10_-_30531832_30531863	1.00695	Brca1	ENSMUST00000217138.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000217644.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000216172.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr8_+_55024446_55024504	0.961426	Brca1	ENSMUST00000239166.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5	ENSMUST00000239106.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5	ENSMUST00000239152.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5
mm39_v1_chr19_+_10181378_10181378	0.959537	Brca1	ENSMUST00000040372.14|Tmem258|ENSMUSG00000036372.15|transmembrane protein 258
mm39_v1_chr5_-_123127346_123127401	0.955171	Brca1	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr9_-_96246460_96246495	0.928533	Brca1	ENSMUST00000034983.7|Atp1b3|ENSMUSG00000032412.9|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm39_v1_chr7_-_46558754_46558784	0.917104	Brca1	ENSMUST00000209538.2|Tsg101|ENSMUSG00000014402.16|tumor susceptibility gene 101
mm39_v1_chrX_+_168468186_168468246	0.905953	Brca1	ENSMUST00000112107.8|Mid1|ENSMUSG00000035299.17|midline 1	ENSMUST00000112104.8|Mid1|ENSMUSG00000035299.17|midline 1
mm39_v1_chr19_+_36061096_36061136	0.905208	Brca1	ENSMUST00000025714.9|Rpp30|ENSMUSG00000024800.9|ribonuclease P/MRP 30 subunit
mm39_v1_chr15_+_102427149_102427237	0.844315	Brca1	ENSMUST00000146756.8|Tarbp2|ENSMUSG00000023051.12|TARBP2, RISC loading complex RNA binding subunit	ENSMUST00000142194.3|Tarbp2|ENSMUSG00000023051.12|TARBP2, RISC loading complex RNA binding subunit
mm39_v1_chr2_-_111843053_111843053	0.830191	Brca1	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr8_-_61407760_61407824	0.824448	Brca1	ENSMUST00000110302.8|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr14_+_30723340_30723364	0.807292	Brca1	ENSMUST00000168584.9|Glt8d1|ENSMUSG00000021916.17|glycosyltransferase 8 domain containing 1	ENSMUST00000226378.2|Glt8d1|ENSMUSG00000021916.17|glycosyltransferase 8 domain containing 1
mm39_v1_chr7_+_35148188_35148227	0.793339	Brca1	ENSMUST00000118383.8|Slc7a9|ENSMUSG00000030492.17|solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
mm39_v1_chr10_-_30531768_30531807	0.765174	Brca1	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr19_+_44551280_44551318	0.754426	Brca1	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr9_+_8544143_8544224	0.692746	Brca1	ENSMUST00000050433.8|Trpc6|ENSMUSG00000031997.10|transient receptor potential cation channel, subfamily C, member 6	ENSMUST00000217462.2|Trpc6|ENSMUSG00000031997.10|transient receptor potential cation channel, subfamily C, member 6
mm39_v1_chr7_-_19449319_19449386	0.677461	Brca1	ENSMUST00000032555.10|Tomm40|ENSMUSG00000002984.18|translocase of outer mitochondrial membrane 40	ENSMUST00000093552.12|Tomm40|ENSMUSG00000002984.18|translocase of outer mitochondrial membrane 40
mm39_v1_chr13_-_49473695_49473787	0.666898	Brca1	ENSMUST00000110086.2|Fgd3|ENSMUSG00000037946.12|FYVE, RhoGEF and PH domain containing 3
mm39_v1_chr4_-_123507494_123507544	0.666434	Brca1	ENSMUST00000238866.2|Macf1|ENSMUSG00000028649.22|microtubule-actin crosslinking factor 1
mm39_v1_chr11_-_41891111_41891183	0.662567	Brca1	ENSMUST00000109290.2|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr6_-_120334302_120334364	0.648857	Brca1	ENSMUST00000163827.8|Ccdc77|ENSMUSG00000030177.15|coiled-coil domain containing 77
mm39_v1_chr8_-_85696369_85696413	0.63877	Brca1	ENSMUST00000109736.9|Rnaseh2a|ENSMUSG00000052926.17|ribonuclease H2, large subunit	ENSMUST00000140561.8|Rnaseh2a|ENSMUSG00000052926.17|ribonuclease H2, large subunit
mm39_v1_chr7_-_100581314_100581413	0.634729	Brca1	ENSMUST00000107032.3|Arhgef17|ENSMUSG00000032875.9|Rho guanine nucleotide exchange factor (GEF) 17
mm39_v1_chr2_-_134485936_134485962	0.626422	Brca1	ENSMUST00000110120.2|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr4_+_106768714_106768864	0.625971	Brca1	ENSMUST00000072753.13|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3	ENSMUST00000097934.10|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3
mm39_v1_chr6_-_122317457_122317471	0.625526	Brca1	ENSMUST00000160843.8|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr4_-_98705774_98705944	0.603839	Brca1	ENSMUST00000102790.4|Kank4|ENSMUSG00000035407.9|KN motif and ankyrin repeat domains 4
mm39_v1_chr17_+_71511642_71511688	0.577797	Brca1	ENSMUST00000126681.8|Lpin2|ENSMUSG00000024052.18|lipin 2
mm39_v1_chr13_+_93441447_93441786	0.554122	Brca1	ENSMUST00000109497.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109498.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000060490.11|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109492.9|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109496.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109495.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr4_+_106768662_106768708	0.550586	Brca1	ENSMUST00000030367.15|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3	ENSMUST00000149926.8|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3
mm39_v1_chr2_-_29677634_29677688	0.545456	Brca1	ENSMUST00000177467.8|Trub2|ENSMUSG00000039826.14|TruB pseudouridine (psi) synthase family member 2	ENSMUST00000113807.10|Trub2|ENSMUSG00000039826.14|TruB pseudouridine (psi) synthase family member 2
mm39_v1_chr4_+_108336164_108336278	0.544059	Brca1	ENSMUST00000155068.2|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4
mm39_v1_chr10_-_13264497_13264518	0.501227	Brca1	ENSMUST00000105546.8|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr6_-_68857658_68857697	0.485239	Brca1	ENSMUST00000198756.2|Gm42543|ENSMUSG00000105630.2|predicted gene 42543
mm39_v1_chr10_-_127177729_127177843	0.479158	Brca1	ENSMUST00000026474.5|Gli1|ENSMUSG00000025407.8|GLI-Kruppel family member GLI1	ENSMUST00000219671.2|Gli1|ENSMUSG00000025407.8|GLI-Kruppel family member GLI1
mm39_v1_chr2_+_167774247_167774300	0.475508	Brca1	ENSMUST00000029053.8|Ptpn1|ENSMUSG00000027540.14|protein tyrosine phosphatase, non-receptor type 1
mm39_v1_chr5_-_123804745_123804758	0.470767	Brca1	ENSMUST00000149410.2|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chr8_+_47070326_47070452	0.470642	Brca1	ENSMUST00000211115.2|Casp3|ENSMUSG00000031628.10|caspase 3	ENSMUST00000093517.7|Casp3|ENSMUSG00000031628.10|caspase 3
mm39_v1_chrY_-_7169293_7169293	0.462729	Brca1	ENSMUST00000189201.2|Gm21244|ENSMUSG00000094484.3|predicted gene, 21244
mm39_v1_chr11_-_93776580_93776599	0.458098	Brca1	ENSMUST00000066888.10|Utp18|ENSMUSG00000054079.13|UTP18 small subunit processome component
mm39_v1_chr7_-_112968533_112968602	0.434114	Brca1	ENSMUST00000047091.14|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10	ENSMUST00000119278.8|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10
mm39_v1_chr12_-_12990584_12990617	0.419919	Brca1	ENSMUST00000130990.2|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr19_-_12742811_12742996	0.419207	Brca1	ENSMUST00000112933.2|Cntf|ENSMUSG00000079415.3|ciliary neurotrophic factor
mm39_v1_chr6_-_148846247_148846324	0.41408	Brca1	ENSMUST00000111562.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000081956.12|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr7_-_18266150_18266194	0.410693	Brca1	ENSMUST00000094795.5|Psg25|ENSMUSG00000070798.5|pregnancy-specific glycoprotein 25
mm39_v1_chrX_+_73352694_73352767	0.404151	Brca1	ENSMUST00000130581.2|Gdi1|ENSMUSG00000015291.11|guanosine diphosphate (GDP) dissociation inhibitor 1
mm39_v1_chr7_-_81216687_81216702	0.393285	Brca1	ENSMUST00000042318.6|Fsd2|ENSMUSG00000038663.8|fibronectin type III and SPRY domain containing 2
mm39_v1_chr4_+_109092459_109092459	0.384255	Brca1	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr5_+_67126304_67126475	0.377376	Brca1	ENSMUST00000132991.5|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr2_-_134486039_134486065	0.366577	Brca1	ENSMUST00000038228.11|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr1_+_179788675_179788675	0.362023	Brca1	ENSMUST00000076687.12|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000097450.10|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000212756.2|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr12_+_28699598_28699671	0.348529	Brca1	ENSMUST00000020959.9|Rnaseh1|ENSMUSG00000020630.10|ribonuclease H1
mm39_v1_chr1_-_132635042_132635064	0.331271	Brca1	ENSMUST00000043189.14|Nfasc|ENSMUSG00000026442.15|neurofascin
mm39_v1_chrX_+_41591476_41591637	0.322407	Brca1	ENSMUST00000115070.8|Sh2d1a|ENSMUSG00000005696.12|SH2 domain containing 1A	ENSMUST00000153948.2|Sh2d1a|ENSMUSG00000005696.12|SH2 domain containing 1A
mm39_v1_chr10_+_69369854_69369901	0.318312	Brca1	ENSMUST00000182557.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr2_-_34760960_34760974	0.302056	Brca1	ENSMUST00000028225.12|Psmd5|ENSMUSG00000026869.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm39_v1_chr8_+_47070461_47070481	0.280359	Brca1	ENSMUST00000210534.2|Casp3|ENSMUSG00000031628.10|caspase 3
mm39_v1_chr1_+_187995096_187995231	0.274044	Brca1	ENSMUST00000060479.14|Ush2a|ENSMUSG00000026609.16|usherin
mm39_v1_chr7_-_64522741_64522798	0.271572	Brca1	ENSMUST00000094331.5|Nsmce3|ENSMUSG00000070520.5|NSE3 homolog, SMC5-SMC6 complex component
mm39_v1_chr14_-_52248324_52248369	0.261819	Brca1	ENSMUST00000226964.2|Zfp219|ENSMUSG00000049295.18|zinc finger protein 219
mm39_v1_chr3_+_109481223_109481306	0.257908	Brca1	ENSMUST00000106576.3|Vav3|ENSMUSG00000033721.17|vav 3 oncogene
mm39_v1_chr7_-_29772226_29772349	0.249372	Brca1	ENSMUST00000183115.8|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000182919.8|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000183190.2|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000080834.15|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82
mm39_v1_chr3_-_90340910_90340926	0.247902	Brca1	ENSMUST00000196530.2|Ints3|ENSMUSG00000027933.12|integrator complex subunit 3
mm39_v1_chrX_+_41591355_41591374	0.238315	Brca1	ENSMUST00000189753.7|Sh2d1a|ENSMUSG00000005696.12|SH2 domain containing 1A
mm39_v1_chr19_-_57227742_57227761	0.235365	Brca1	ENSMUST00000111559.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr2_-_45000389_45000766	0.229885	Brca1	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr5_+_138019523_138019538	0.22226	Brca1	ENSMUST00000171498.3|Smok3a|ENSMUSG00000075599.5|sperm motility kinase 3A	ENSMUST00000085886.3|Smok3a|ENSMUSG00000075599.5|sperm motility kinase 3A
mm39_v1_chr10_-_13264574_13264714	0.212007	Brca1	ENSMUST00000079698.7|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr16_-_16929056_16929060	0.211391	Brca1	ENSMUST00000232481.2|Ppil2|ENSMUSG00000022771.18|peptidylprolyl isomerase (cyclophilin)-like 2
mm39_v1_chr5_+_20112704_20112764	0.197655	Brca1	ENSMUST00000115267.7|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr1_-_132635078_132635144	0.195211	Brca1	ENSMUST00000187861.7|Nfasc|ENSMUSG00000026442.15|neurofascin
mm39_v1_chr7_+_102423702_102423702	0.183326	Brca1	ENSMUST00000098217.3|Olfr561|ENSMUSG00000073966.4|olfactory receptor 561
mm39_v1_chr10_-_7162196_7162248	0.173929	Brca1	ENSMUST00000015346.12|Cnksr3|ENSMUSG00000015202.14|Cnksr family member 3
mm39_v1_chr3_-_61273228_61273372	0.17057	Brca1	ENSMUST00000066298.3|B430305J03Rik|ENSMUSG00000053706.3|RIKEN cDNA B430305J03 gene
mm39_v1_chr6_-_55109960_55109999	0.166083	Brca1	ENSMUST00000003568.15|Crhr2|ENSMUSG00000003476.17|corticotropin releasing hormone receptor 2
mm39_v1_chr4_+_10874537_10874607	0.155347	Brca1	ENSMUST00000101504.3|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chr16_+_44215136_44215193	0.153771	Brca1	ENSMUST00000099742.9|Cfap44|ENSMUSG00000071550.15|cilia and flagella associated protein 44
mm39_v1_chr13_+_99321241_99321331	0.142045	Brca1	ENSMUST00000056558.11|Zfp366|ENSMUSG00000050919.11|zinc finger protein 366
mm39_v1_chr12_+_108145802_108145842	0.135983	Brca1	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr3_-_59060907_59060962	0.133255	Brca1	ENSMUST00000196081.5|P2ry14|ENSMUSG00000036381.14|purinergic receptor P2Y, G-protein coupled, 14
mm39_v1_chr13_-_113317431_113317501	0.132311	Brca1	ENSMUST00000038212.14|Gzmk|ENSMUSG00000042385.15|granzyme K
mm39_v1_chr6_-_70194405_70194437	0.132271	Brca1	ENSMUST00000103384.2|Igkv8-24|ENSMUSG00000076583.2|immunoglobulin kappa chain variable 8-24
mm39_v1_chr5_+_20112500_20112549	0.129404	Brca1	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr7_-_127048280_127048338	0.129173	Brca1	ENSMUST00000053392.11|Zfp689|ENSMUSG00000048921.12|zinc finger protein 689
mm39_v1_chr11_-_58521327_58521327	0.126919	Brca1	ENSMUST00000214132.2|Olfr323|ENSMUSG00000043880.6|olfactory receptor 323
mm39_v1_chr19_+_10502612_10502671	0.123943	Brca1	ENSMUST00000237321.2|Cpsf7|ENSMUSG00000034820.5|cleavage and polyadenylation specific factor 7	ENSMUST00000038379.5|Cpsf7|ENSMUSG00000034820.5|cleavage and polyadenylation specific factor 7
mm39_v1_chr11_+_70861007_70861039	0.121167	Brca1	ENSMUST00000018593.10|Rpain|ENSMUSG00000018449.13|RPA interacting protein
mm39_v1_chr5_+_67125902_67125920	0.102377	Brca1	ENSMUST00000127184.8|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr11_-_41891359_41891421	0.102375	Brca1	ENSMUST00000070735.10|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr6_-_55109826_55109957	0.100684	Brca1	ENSMUST00000164012.3|Crhr2|ENSMUSG00000003476.17|corticotropin releasing hormone receptor 2	ENSMUST00000212633.2|Crhr2|ENSMUSG00000003476.17|corticotropin releasing hormone receptor 2
mm39_v1_chr3_-_51184895_51184996	0.0990112	Brca1	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr18_+_37138256_37138256	0.0861055	Brca1	ENSMUST00000115658.6|Pcdha11|ENSMUSG00000007440.11|protocadherin alpha 11
mm39_v1_chr17_+_34129221_34129251	0.07987	Brca1	ENSMUST00000174541.9|Daxx|ENSMUSG00000002307.17|Fas death domain-associated protein
mm39_v1_chr11_+_115671523_115671544	0.0758327	Brca1	ENSMUST00000239299.2|Tmem94|ENSMUSG00000020747.19|transmembrane protein 94
mm39_v1_chrX_+_41591410_41591439	0.0749183	Brca1	ENSMUST00000005839.11|Sh2d1a|ENSMUSG00000005696.12|SH2 domain containing 1A
mm39_v1_chr17_-_52117894_52117947	0.0666025	Brca1	ENSMUST00000176669.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr8_-_96580129_96580170	0.0634377	Brca1	ENSMUST00000212628.2|Slc38a7|ENSMUSG00000036534.7|solute carrier family 38, member 7	ENSMUST00000040481.4|Slc38a7|ENSMUSG00000036534.7|solute carrier family 38, member 7	ENSMUST00000212270.2|Slc38a7|ENSMUSG00000036534.7|solute carrier family 38, member 7
mm39_v1_chr18_+_37085673_37085794	0.0584884	Brca1	ENSMUST00000192512.6|Pcdha4|ENSMUSG00000104252.6|protocadherin alpha 4	ENSMUST00000192295.2|Pcdha4|ENSMUSG00000104252.6|protocadherin alpha 4	ENSMUST00000115661.5|Gm42416|ENSMUSG00000103458.2|predicted gene, 42416
mm39_v1_chr11_-_69712970_69713006	0.0510906	Brca1	ENSMUST00000045771.7|Spem1|ENSMUSG00000041165.7|sperm maturation 1
mm39_v1_chr5_-_72800070_72800095	0.043379	Brca1	ENSMUST00000087213.12|Cnga1|ENSMUSG00000067220.13|cyclic nucleotide gated channel alpha 1
mm39_v1_chr10_+_69761314_69761362	0.0373235	Brca1	ENSMUST00000182692.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092433.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr14_+_32555912_32555922	0.0338508	Brca1	ENSMUST00000104926.3|Fam170b|ENSMUSG00000078127.4|family with sequence similarity 170, member B
mm39_v1_chr4_+_10874498_10874526	0.0292114	Brca1	ENSMUST00000080517.14|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chr2_+_88217406_88217406	0.027735	Brca1	ENSMUST00000214040.3|Olfr1178|ENSMUSG00000056995.4|olfactory receptor 1178
mm39_v1_chr19_-_24202344_24202438	0.0273954	Brca1	ENSMUST00000099558.5|Tjp2|ENSMUSG00000024812.12|tight junction protein 2	ENSMUST00000232956.2|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr15_+_36174156_36174217	0.025194	Brca1	ENSMUST00000180159.8|Polr2k|ENSMUSG00000045996.13|polymerase (RNA) II (DNA directed) polypeptide K	ENSMUST00000057177.7|Polr2k|ENSMUSG00000045996.13|polymerase (RNA) II (DNA directed) polypeptide K
mm39_v1_chr12_+_25024913_25024992	0.0162344	Brca1	ENSMUST00000066652.7|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000220459.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000222941.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220
mm39_v1_chr8_+_12965876_12965975	0.0106914	Brca1	ENSMUST00000110876.9|Mcf2l|ENSMUSG00000031442.22|mcf.2 transforming sequence-like	ENSMUST00000110879.9|Mcf2l|ENSMUSG00000031442.22|mcf.2 transforming sequence-like
mm39_v1_chr6_+_115578863_115578902	0.00287951	Brca1	ENSMUST00000000449.9|Mkrn2|ENSMUSG00000000439.10|makorin, ring finger protein, 2
mm39_v1_chr17_-_16051295_16051365	0.00202594	Brca1	ENSMUST00000231985.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
