mm10_v2_chr1_+_136624901_136624949	0.36039	UGCAUUG	ENSMUST00000047734.8|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281 	ENSMUST00000112046.1|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281
mm10_v2_chr2_+_96318014_96318216	0.341727	UGCAUUG	ENSMUST00000135431.1|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C 	ENSMUST00000162807.2|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C
mm10_v2_chr17_-_91092715_91092822	0.311241	UGCAUUG	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr5_-_8997324_8997324	0.268558	UGCAUUG	ENSMUST00000003720.4|Crot|ENSMUSG00000003623.4|carnitine O-octanoyltransferase
mm10_v2_chr9_+_74861888_74861921	0.249492	UGCAUUG	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr4_+_138967112_138967127	0.243017	UGCAUUG	ENSMUST00000116094.2|Rnf186|ENSMUSG00000070661.5|ring finger protein 186
mm10_v2_chr9_+_68653761_68653786	0.237469	UGCAUUG	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr12_+_103532435_103532565	0.233616	UGCAUUG	ENSMUST00000021631.5|Ppp4r4|ENSMUSG00000021209.6|protein phosphatase 4, regulatory subunit 4
mm10_v2_chr18_+_64340225_64340364	0.228322	UGCAUUG	ENSMUST00000175965.2|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2 	ENSMUST00000115145.3|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2
mm10_v2_chr1_+_187997821_187997834	0.190878	UGCAUUG	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr5_+_104435112_104435158	0.174487	UGCAUUG	ENSMUST00000031243.8|Spp1|ENSMUSG00000029304.8|secreted phosphoprotein 1 	ENSMUST00000086833.6|Spp1|ENSMUSG00000029304.8|secreted phosphoprotein 1 	ENSMUST00000112748.1|Spp1|ENSMUSG00000029304.8|secreted phosphoprotein 1 	ENSMUST00000112746.1|Spp1|ENSMUSG00000029304.8|secreted phosphoprotein 1 	ENSMUST00000145084.1|Spp1|ENSMUSG00000029304.8|secreted phosphoprotein 1 	ENSMUST00000132457.1|Spp1|ENSMUSG00000029304.8|secreted phosphoprotein 1
mm10_v2_chr4_+_97777606_97777632	0.169057	UGCAUUG	ENSMUST00000075448.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000092532.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr18_-_64660981_64661010	0.160375	UGCAUUG	ENSMUST00000025482.8|Atp8b1|ENSMUSG00000039529.8|ATPase, class I, type 8B, member 1
mm10_v2_chr13_-_103920508_103920572	0.157536	UGCAUUG	ENSMUST00000053927.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000091269.4|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000022222.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr9_-_43239816_43239842	0.156608	UGCAUUG	ENSMUST00000034512.5|Oaf|ENSMUSG00000032014.5|OAF homolog (Drosophila)
mm10_v2_chr9_-_52168111_52168111	0.150544	UGCAUUG	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr19_+_3323301_3323339	0.147098	UGCAUUG	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr13_+_93674403_93674452	0.145716	UGCAUUG	ENSMUST00000048001.6|Dmgdh|ENSMUSG00000042102.6|dimethylglycine dehydrogenase precursor
mm10_v2_chr2_-_32431104_32431178	0.145643	UGCAUUG	ENSMUST00000127961.1|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 	ENSMUST00000136361.1|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 	ENSMUST00000052119.7|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm10_v2_chr10_-_120899067_120899101	0.145277	UGCAUUG	ENSMUST00000092143.5|Msrb3|ENSMUSG00000051236.7|methionine sulfoxide reductase B3
mm10_v2_chr11_-_60220550_60220632	0.144929	UGCAUUG	ENSMUST00000020846.1|Srebf1|ENSMUSG00000020538.9|sterol regulatory element binding transcription factor 1
mm10_v2_chr6_-_13677930_13677974	0.144504	UGCAUUG	ENSMUST00000045235.5|B630005N14Rik|ENSMUSG00000042742.5|RIKEN cDNA B630005N14 gene
mm10_v2_chr9_+_62341329_62341390	0.140236	UGCAUUG	ENSMUST00000085519.6|Anp32a|ENSMUSG00000032249.8|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm10_v2_chr5_+_43233463_43233491	0.135526	UGCAUUG	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr14_-_30353468_30353535	0.134339	UGCAUUG	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr3_-_85746266_85746266	0.132584	UGCAUUG	ENSMUST00000118408.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr19_+_38836561_38836612	0.132356	UGCAUUG	ENSMUST00000037302.5|Tbc1d12|ENSMUSG00000048720.7|TBC1D12: TBC1 domain family, member 12
mm10_v2_chr12_+_10390756_10390836	0.129286	UGCAUUG	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr15_+_44619551_44619641	0.125904	UGCAUUG	ENSMUST00000022964.7|Ebag9|ENSMUSG00000022339.8|estrogen receptor-binding fragment-associated gene 9
mm10_v2_chr7_+_79273201_79273270	0.12133	UGCAUUG	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr8_-_84800024_84800283	0.120939	UGCAUUG	ENSMUST00000126806.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X 	ENSMUST00000076715.6|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr12_-_72070991_72071079	0.117293	UGCAUUG	ENSMUST00000050649.4|Gpr135|ENSMUSG00000043398.4|G protein-coupled receptor 135
mm10_v2_chr7_+_49910112_49910146	0.112652	UGCAUUG	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr6_-_149101674_149101686	0.111448	UGCAUUG	ENSMUST00000111557.1|Dennd5b|ENSMUSG00000030313.9|DENN/MADD domain containing 5B
mm10_v2_chr7_+_123982799_123982869	0.109844	UGCAUUG	ENSMUST00000106437.1|Hs3st4|ENSMUSG00000078591.1|heparan sulfate (glucosamine) 3-O-sulfotransferase 4
mm10_v2_chr17_+_80944611_80944644	0.108795	UGCAUUG	ENSMUST00000025092.4|Tmem178|ENSMUSG00000024245.4|transmembrane protein 178
mm10_v2_chr3_+_41555723_41555745	0.107584	UGCAUUG	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr6_-_28134545_28134545	0.107344	UGCAUUG	ENSMUST00000115323.1|Grm8|ENSMUSG00000024211.9|glutamate receptor, metabotropic 8
mm10_v2_chr16_-_76373827_76373852	0.106005	UGCAUUG	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr18_-_77565050_77565162	0.103979	UGCAUUG	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr4_-_53159885_53159900	0.101772	UGCAUUG	ENSMUST00000030010.3|Abca1|ENSMUSG00000015243.4|ATP-binding cassette, sub-family A (ABC1), member 1
mm10_v2_chrM_+_3906_3926	0.101303	UGCAUUG	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr14_+_21499770_21499883	0.100667	UGCAUUG	ENSMUST00000182855.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000069648.7|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000182405.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr13_-_36734450_36734492	0.0991611	UGCAUUG	ENSMUST00000037623.8|Nrn1|ENSMUSG00000039114.9|neuritin 1
mm10_v2_chr13_+_9093893_9093927	0.0982507	UGCAUUG	ENSMUST00000091829.2|Larp4b|ENSMUSG00000033499.7|La ribonucleoprotein domain family, member 4B
mm10_v2_chr10_-_49788743_49788769	0.0943979	UGCAUUG	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr9_+_25252439_25252516	0.0920066	UGCAUUG	ENSMUST00000115272.2|Sept7|ENSMUSG00000001833.10|septin 7 	ENSMUST00000165594.2|Sept7|ENSMUSG00000001833.10|septin 7
mm10_v2_chr18_-_10610124_10610144	0.0896568	UGCAUUG	ENSMUST00000097670.3|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr17_-_64331817_64331957	0.0859427	UGCAUUG	ENSMUST00000172733.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing 	ENSMUST00000172818.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing
mm10_v2_chr4_+_104766308_104766331	0.0853051	UGCAUUG	ENSMUST00000031663.3|C8b|ENSMUSG00000029656.7|complement component 8, beta polypeptide
mm10_v2_chr3_+_96727611_96727620	0.085233	UGCAUUG	ENSMUST00000029740.9|Rnf115|ENSMUSG00000028098.9|ring finger protein 115
mm10_v2_chr3_-_84304762_84304809	0.0850475	UGCAUUG	ENSMUST00000107692.1|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr9_+_65294260_65294341	0.0849189	UGCAUUG	ENSMUST00000015501.4|Clpx|ENSMUSG00000015357.4|caseinolytic peptidase X (E.coli) 	ENSMUST00000113824.1|Clpx|ENSMUSG00000015357.4|caseinolytic peptidase X (E.coli)
mm10_v2_chr4_+_84884276_84884314	0.0791641	UGCAUUG	ENSMUST00000047023.6|Cntln|ENSMUSG00000038070.9|centlein, centrosomal protein
mm10_v2_chr8_-_71486037_71486067	0.0787413	UGCAUUG	ENSMUST00000093450.4|Ano8|ENSMUSG00000034863.7|anoctamin 8
mm10_v2_chr18_+_75367529_75367561	0.0783335	UGCAUUG	ENSMUST00000026999.3|Smad7|ENSMUSG00000025880.5|SMAD family member 7
mm10_v2_chr3_-_107696462_107696574	0.0772315	UGCAUUG	ENSMUST00000029490.8|Ahcyl1|ENSMUSG00000027893.8|S-adenosylhomocysteine hydrolase-like 1
mm10_v2_chr10_+_67572042_67572076	0.0761245	UGCAUUG	ENSMUST00000099661.2|Gm10797|ENSMUSG00000074999.2|predicted gene 10797
mm10_v2_chr19_-_59345746_59345853	0.0760404	UGCAUUG	ENSMUST00000099274.2|Pdzd8|ENSMUSG00000074746.2|PDZ domain containing 8
mm10_v2_chr8_-_85299483_85299535	0.0747736	UGCAUUG	ENSMUST00000034131.8|Vps35|ENSMUSG00000031696.8|vacuolar protein sorting 35
mm10_v2_chr1_+_118627943_118627951	0.0736988	UGCAUUG	ENSMUST00000027629.8|Tfcp2l1|ENSMUSG00000026380.9|transcription factor CP2-like 1
mm10_v2_chr17_+_26715644_26715724	0.0715499	UGCAUUG	ENSMUST00000062519.7|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000144221.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000142539.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000151681.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor
mm10_v2_chrX_-_103981242_103981287	0.0692833	UGCAUUG	ENSMUST00000121153.1|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting 	ENSMUST00000070705.4|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting
mm10_v2_chr16_-_28445227_28445395	0.0673162	UGCAUUG	ENSMUST00000100024.1|Fgf12|ENSMUSG00000022523.9|fibroblast growth factor 12
mm10_v2_chr3_+_135825648_135825664	0.0673094	UGCAUUG	ENSMUST00000180196.1|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr13_-_107890059_107890073	0.0672884	UGCAUUG	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr1_+_191906743_191906767	0.0664515	UGCAUUG	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr6_+_140424086_140424138	0.0645644	UGCAUUG	ENSMUST00000087622.3|Plekha5|ENSMUSG00000030231.8|pleckstrin homology domain containing, family A member 5
mm10_v2_chr15_+_102966794_102966812	0.0640561	UGCAUUG	ENSMUST00000001699.7|Hoxc10|ENSMUSG00000022484.7|homeobox C10
mm10_v2_chr5_-_71658308_71658308	0.0627892	UGCAUUG	ENSMUST00000031121.5|Gabra4|ENSMUSG00000029211.7|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm10_v2_chr4_+_102760294_102760525	0.0614626	UGCAUUG	ENSMUST00000072481.5|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000156596.1|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000080728.6|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000106882.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr5_+_23434435_23434471	0.0613608	UGCAUUG	ENSMUST00000094962.2|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E 	ENSMUST00000115128.1|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E
mm10_v2_chr2_-_101649501_101649539	0.0612783	UGCAUUG	ENSMUST00000078494.5|Rag1|ENSMUSG00000061311.6|recombination activating gene 1 	ENSMUST00000160722.1|B230118H07Rik|ENSMUSG00000027165.10|RIKEN cDNA B230118H07 gene 	ENSMUST00000160037.1|B230118H07Rik|ENSMUSG00000027165.10|RIKEN cDNA B230118H07 gene
mm10_v2_chr3_-_115715031_115715062	0.0603268	UGCAUUG	ENSMUST00000055676.2|S1pr1|ENSMUSG00000045092.7|sphingosine-1-phosphate receptor 1
mm10_v2_chr4_-_59549314_59549364	0.0595292	UGCAUUG	ENSMUST00000148331.2|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3 	ENSMUST00000030076.5|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3
mm10_v2_chr15_+_102921103_102921132	0.0580191	UGCAUUG	ENSMUST00000001700.6|Hoxc13|ENSMUSG00000001655.6|homeobox C13
mm10_v2_chr1_-_176275274_176275308	0.0526534	UGCAUUG	ENSMUST00000111166.1|Pld5|ENSMUSG00000055214.9|phospholipase D family, member 5 	ENSMUST00000065967.7|Pld5|ENSMUSG00000055214.9|phospholipase D family, member 5
mm10_v2_chr15_+_58933774_58933836	0.0524054	UGCAUUG	ENSMUST00000022980.3|Ndufb9|ENSMUSG00000022354.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm10_v2_chr5_-_128953303_128953362	0.051633	UGCAUUG	ENSMUST00000111346.1|Rimbp2|ENSMUSG00000029420.8|RIMS binding protein 2
mm10_v2_chr10_-_89686250_89686306	0.0513185	UGCAUUG	ENSMUST00000092227.5|Scyl2|ENSMUSG00000069539.5|SCY1-like 2 (S. cerevisiae) 	ENSMUST00000174252.1|Scyl2|ENSMUSG00000069539.5|SCY1-like 2 (S. cerevisiae)
mm10_v2_chr3_-_69127098_69127113	0.0503628	UGCAUUG	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr18_-_12236301_12236405	0.0502716	UGCAUUG	ENSMUST00000025279.5|Npc1|ENSMUSG00000024413.7|Niemann Pick type C1
mm10_v2_chr10_-_68278713_68278735	0.0496588	UGCAUUG	ENSMUST00000020106.7|Arid5b|ENSMUSG00000019947.9|AT rich interactive domain 5B (MRF1-like)
mm10_v2_chr3_+_102010138_102010171	0.0491806	UGCAUUG	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr8_+_106935720_106935776	0.0490123	UGCAUUG	ENSMUST00000047425.3|Sntb2|ENSMUSG00000041308.5|syntrophin, basic 2
mm10_v2_chr1_-_13372434_13372457	0.0479777	UGCAUUG	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr2_-_48949206_48949276	0.04787	UGCAUUG	ENSMUST00000090976.3|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000149679.1|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000028098.4|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4
mm10_v2_chr2_-_37647199_37647285	0.0473572	UGCAUUG	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr14_-_61439831_61439947	0.0454605	UGCAUUG	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr6_+_65671590_65671618	0.045259	UGCAUUG	ENSMUST00000054351.4|Ndnf|ENSMUSG00000049001.4|neuron-derived neurotrophic factor
mm10_v2_chr5_-_121836852_121836880	0.044334	UGCAUUG	ENSMUST00000086310.1|Sh2b3|ENSMUSG00000042594.10|SH2B adaptor protein 3
mm10_v2_chr17_-_10319324_10319380	0.0439105	UGCAUUG	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr9_-_75409352_75409383	0.0432693	UGCAUUG	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr19_-_6057736_6057769	0.0430776	UGCAUUG	ENSMUST00000007482.6|Mrpl49|ENSMUSG00000007338.9|mitochondrial ribosomal protein L49
mm10_v2_chr4_-_34882919_34882964	0.0429359	UGCAUUG	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr3_-_26133734_26133734	0.0429328	UGCAUUG	ENSMUST00000108308.3|Nlgn1|ENSMUSG00000063887.7|neuroligin 1 	ENSMUST00000075054.4|Nlgn1|ENSMUSG00000063887.7|neuroligin 1
mm10_v2_chrX_+_13280970_13281031	0.0419317	UGCAUUG	ENSMUST00000000804.6|Ddx3x|ENSMUSG00000000787.6|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm10_v2_chr3_+_127633134_127633140	0.0395024	UGCAUUG	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr2_+_90847149_90847160	0.0393258	UGCAUUG	ENSMUST00000136872.1|Mtch2|ENSMUSG00000027282.11|mitochondrial carrier homolog 2 (C. elegans)
mm10_v2_chr1_+_74236479_74236598	0.0387561	UGCAUUG	ENSMUST00000113820.2|Arpc2|ENSMUSG00000006304.8|actin related protein 2/3 complex, subunit 2 	ENSMUST00000006467.7|Arpc2|ENSMUSG00000006304.8|actin related protein 2/3 complex, subunit 2 	ENSMUST00000113819.1|Arpc2|ENSMUSG00000006304.8|actin related protein 2/3 complex, subunit 2
mm10_v2_chr11_-_86544754_86544805	0.038337	UGCAUUG	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr13_-_60177357_60177373	0.0379888	UGCAUUG	ENSMUST00000065086.4|Gas1|ENSMUSG00000052957.7|growth arrest specific 1
mm10_v2_chr2_-_73214409_73214447	0.0376637	UGCAUUG	ENSMUST00000028517.6|Ola1|ENSMUSG00000027108.9|Obg-like ATPase 1
mm10_v2_chr1_-_164458345_164458363	0.0365335	UGCAUUG	ENSMUST00000027863.7|Atp1b1|ENSMUSG00000026576.7|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm10_v2_chr14_-_77874887_77874941	0.0363902	UGCAUUG	ENSMUST00000022590.3|Dnajc15|ENSMUSG00000022013.3|DnaJ (Hsp40) homolog, subfamily C, member 15
mm10_v2_chr1_-_124045523_124045571	0.0361906	UGCAUUG	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr8_-_121652895_121652913	0.0357495	UGCAUUG	ENSMUST00000046386.4|Zcchc14|ENSMUSG00000061410.6|zinc finger, CCHC domain containing 14
mm10_v2_chr7_-_132852657_132852673	0.0349161	UGCAUUG	ENSMUST00000033257.8|Mettl10|ENSMUSG00000030960.10|methyltransferase like 10
mm10_v2_chr11_-_55607733_55607822	0.0344659	UGCAUUG	ENSMUST00000108853.1|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit 	ENSMUST00000075603.4|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit
mm10_v2_chr9_-_90114812_90114821	0.0338162	UGCAUUG	ENSMUST00000085248.5|Morf4l1|ENSMUSG00000062270.7|mortality factor 4 like 1 	ENSMUST00000169860.1|Morf4l1|ENSMUSG00000062270.7|mortality factor 4 like 1
mm10_v2_chr3_-_116808166_116808198	0.0328123	UGCAUUG	ENSMUST00000040603.7|Agl|ENSMUSG00000033400.8|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm10_v2_chr13_-_105054895_105054930	0.0311108	UGCAUUG	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr2_-_154892887_154892935	0.0297551	UGCAUUG	ENSMUST00000099173.4|Eif2s2|ENSMUSG00000074656.6|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm10_v2_chr10_-_67548944_67549001	0.0291956	UGCAUUG	ENSMUST00000075686.4|Ado|ENSMUSG00000057134.4|2-aminoethanethiol (cysteamine) dioxygenase
mm10_v2_chrX_-_108834303_108834381	0.0291728	UGCAUUG	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr5_-_102069905_102069940	0.0290574	UGCAUUG	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr12_+_33957645_33957671	0.0290226	UGCAUUG	ENSMUST00000049089.5|Twist1|ENSMUSG00000035799.5|twist basic helix-loop-helix transcription factor 1
mm10_v2_chr5_-_66618772_66618828	0.0280036	UGCAUUG	ENSMUST00000162994.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159512.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159786.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2
mm10_v2_chr13_-_48968004_48968029	0.027696	UGCAUUG	ENSMUST00000060805.6|Fam120a|ENSMUSG00000038014.7|family with sequence similarity 120, member A
mm10_v2_chr3_-_51560816_51560878	0.0275856	UGCAUUG	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr11_-_30025915_30026033	0.0263972	UGCAUUG	ENSMUST00000058902.5|Eml6|ENSMUSG00000044072.8|echinoderm microtubule associated protein like 6
mm10_v2_chr12_-_14152038_14152069	0.025675	UGCAUUG	ENSMUST00000020926.6|Fam84a|ENSMUSG00000020607.6|family with sequence similarity 84, member A
mm10_v2_chr2_+_93642307_93642388	0.0256557	UGCAUUG	ENSMUST00000042078.3|Alx4|ENSMUSG00000040310.6|aristaless-like homeobox 4 	ENSMUST00000111254.1|Alx4|ENSMUSG00000040310.6|aristaless-like homeobox 4
mm10_v2_chr1_-_58586191_58586323	0.0244788	UGCAUUG	ENSMUST00000038372.7|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000097724.3|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161000.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161600.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B
mm10_v2_chr12_-_80112998_80113019	0.023792	UGCAUUG	ENSMUST00000165114.1|Zfp36l1|ENSMUSG00000021127.6|zinc finger protein 36, C3H type-like 1 	ENSMUST00000021552.1|Zfp36l1|ENSMUSG00000021127.6|zinc finger protein 36, C3H type-like 1
mm10_v2_chr19_+_29522263_29522341	0.0236529	UGCAUUG	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chr9_+_32696005_32696121	0.0232279	UGCAUUG	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr13_+_55635002_55635036	0.0230478	UGCAUUG	ENSMUST00000172272.1|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENSMUST00000099479.3|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
mm10_v2_chrX_+_75416628_75416649	0.0220021	UGCAUUG	ENSMUST00000033544.7|Brcc3|ENSMUSG00000031201.11|BRCA1/BRCA2-containing complex, subunit 3
mm10_v2_chr6_-_51469869_51469894	0.0213235	UGCAUUG	ENSMUST00000114459.1|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1 	ENSMUST00000069949.6|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1
mm10_v2_chr13_-_119408985_119409003	0.0208711	UGCAUUG	ENSMUST00000099149.3|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase 	ENSMUST00000069902.6|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase 	ENSMUST00000109204.1|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase
mm10_v2_chr18_-_10181792_10181792	0.0199556	UGCAUUG	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr14_+_49066495_49066587	0.0186583	UGCAUUG	ENSMUST00000037473.4|Ap5m1|ENSMUSG00000036291.5|adaptor-related protein complex 5, mu 1 subunit
mm10_v2_chr2_+_74691090_74691090	0.0186081	UGCAUUG	ENSMUST00000061745.3|Hoxd10|ENSMUSG00000050368.3|homeobox D10
mm10_v2_chr12_+_3426857_3426931	0.0182648	UGCAUUG	ENSMUST00000111215.3|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000092003.5|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000144247.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000153102.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila)
mm10_v2_chr13_+_117602439_117602482	0.0181701	UGCAUUG	ENSMUST00000006991.7|Hcn1|ENSMUSG00000021730.7|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm10_v2_chr11_+_77686155_77686179	0.0179784	UGCAUUG	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr9_-_78481724_78481751	0.017483	UGCAUUG	ENSMUST00000042235.8|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
mm10_v2_chr19_-_7105729_7105729	0.0161344	UGCAUUG	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr10_-_5922385_5922407	0.016126	UGCAUUG	ENSMUST00000131996.1|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17 	ENSMUST00000064225.7|Rgs17|ENSMUSG00000019775.11|regulator of G-protein signaling 17
mm10_v2_chr5_+_88720855_88720876	0.0154694	UGCAUUG	ENSMUST00000113229.1|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B 	ENSMUST00000006424.7|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B
mm10_v2_chr4_+_124802543_124802678	0.0132544	UGCAUUG	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr1_+_179960472_179960585	0.0130767	UGCAUUG	ENSMUST00000097453.2|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000111117.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr8_-_91313223_91313279	0.012956	UGCAUUG	ENSMUST00000047783.7|Rpgrip1l|ENSMUSG00000033282.7|Rpgrip1-like
mm10_v2_chr2_+_107290590_107290660	0.0125572	UGCAUUG	ENSMUST00000037012.2|Kcna4|ENSMUSG00000042604.5|potassium voltage-gated channel, shaker-related subfamily, member 4
mm10_v2_chr14_-_124677089_124677127	0.0125107	UGCAUUG	ENSMUST00000095529.3|Fgf14|ENSMUSG00000025551.7|fibroblast growth factor 14
mm10_v2_chr11_-_120991305_120991339	0.0124708	UGCAUUG	ENSMUST00000018274.3|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr4_-_134287215_134287258	0.0123233	UGCAUUG	ENSMUST00000145006.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105877.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000127857.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105876.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like
mm10_v2_chr15_-_38078842_38078860	0.0115282	UGCAUUG	ENSMUST00000110336.2|Ubr5|ENSMUSG00000037487.6|ubiquitin protein ligase E3 component n-recognin 5
mm10_v2_chr18_+_69345721_69345811	0.0106686	UGCAUUG	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr9_+_72532214_72532271	0.0105766	UGCAUUG	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr14_+_46882854_46882973	0.00999245	UGCAUUG	ENSMUST00000022386.8|Samd4|ENSMUSG00000021838.10|sterile alpha motif domain containing 4 	ENSMUST00000100672.3|Samd4|ENSMUSG00000021838.10|sterile alpha motif domain containing 4
mm10_v2_chr6_+_105677768_105677794	0.0084966	UGCAUUG	ENSMUST00000089208.2|Cntn4|ENSMUSG00000064293.8|contactin 4
mm10_v2_chr1_+_6487231_6487338	0.00729226	UGCAUUG	ENSMUST00000140079.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131494.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr19_+_38264761_38264831	0.00650552	UGCAUUG	ENSMUST00000087252.5|Lgi1|ENSMUSG00000067242.5|leucine-rich repeat LGI family, member 1
mm10_v2_chr10_-_80656485_80656519	0.00649091	UGCAUUG	ENSMUST00000126980.1|Btbd2|ENSMUSG00000003344.8|BTB (POZ) domain containing 2
mm10_v2_chr18_-_9450097_9450161	0.00638817	UGCAUUG	ENSMUST00000053917.4|Ccny|ENSMUSG00000024286.7|cyclin Y
mm10_v2_chr11_-_85139939_85140038	0.00547907	UGCAUUG	ENSMUST00000108075.2|Usp32|ENSMUSG00000000804.8|ubiquitin specific peptidase 32
mm10_v2_chr11_-_106788486_106788532	0.00411287	UGCAUUG	ENSMUST00000021062.5|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr14_-_12823031_12823133	0.0039844	UGCAUUG	ENSMUST00000067491.6|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000177814.1|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000112658.1|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000112657.2|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator
mm10_v2_chr5_+_30155243_30155311	0.00355594	UGCAUUG	ENSMUST00000026841.8|Hadhb|ENSMUSG00000059447.7|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit 	ENSMUST00000123980.1|Hadhb|ENSMUSG00000059447.7|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit 	ENSMUST00000114786.1|Hadhb|ENSMUSG00000059447.7|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit
mm10_v2_chr1_-_64121456_64121491	0.00334955	UGCAUUG	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr12_+_102948843_102948874	0.00327098	UGCAUUG	ENSMUST00000101099.5|Unc79|ENSMUSG00000021198.10|unc-79 homolog (C. elegans)
mm10_v2_chr9_+_62858085_62858138	0.0028243	UGCAUUG	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr3_+_146852359_146852438	0.00222603	UGCAUUG	ENSMUST00000038090.5|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7 	ENSMUST00000170055.1|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7
mm10_v2_chr6_+_4903298_4903346	0.00176549	UGCAUUG	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr9_+_53537021_53537074	0.00163054	UGCAUUG	ENSMUST00000035850.7|Npat|ENSMUSG00000033054.7|nuclear protein in the AT region
mm10_v2_chr3_-_73056943_73056943	0.00103506	UGCAUUG	ENSMUST00000059407.7|Slitrk3|ENSMUSG00000048304.7|SLIT and NTRK-like family, member 3
