mm10_v2_chr14_-_36968769_36968793	1.19877	UGCAUAG	ENSMUST00000090024.4|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr18_+_34220978_34221020	1.14966	UGCAUAG	ENSMUST00000079362.5|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli 	ENSMUST00000115781.3|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli
mm10_v2_chr9_-_86695897_86695958	1.10446	UGCAUAG	ENSMUST00000034989.8|Me1|ENSMUSG00000032418.9|malic enzyme 1, NADP(+)-dependent, cytosolic
mm10_v2_chr4_-_19708922_19709004	1.04695	UGCAUAG	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr5_-_8997324_8997324	1.00871	UGCAUAG	ENSMUST00000003720.4|Crot|ENSMUSG00000003623.4|carnitine O-octanoyltransferase
mm10_v2_chr9_+_74861888_74861921	0.999715	UGCAUAG	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr12_+_78226627_78226655	0.974482	UGCAUAG	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr2_+_134786154_134786170	0.969678	UGCAUAG	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr10_-_12861735_12861735	0.947815	UGCAUAG	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr9_+_74953053_74953091	0.882981	UGCAUAG	ENSMUST00000170846.1|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr12_+_4592992_4593087	0.881829	UGCAUAG	ENSMUST00000062580.7|Itsn2|ENSMUSG00000020640.9|intersectin 2
mm10_v2_chr5_+_88886809_88886825	0.850829	UGCAUAG	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr8_+_76899772_76899828	0.846495	UGCAUAG	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr18_+_51117754_51117898	0.824366	UGCAUAG	ENSMUST00000116639.2|Prr16|ENSMUSG00000073565.4|proline rich 16
mm10_v2_chr16_-_30388530_30388530	0.792207	UGCAUAG	ENSMUST00000100013.2|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3 	ENSMUST00000061350.6|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3
mm10_v2_chr7_+_110018301_110018425	0.780757	UGCAUAG	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chr3_+_41555723_41555745	0.772961	UGCAUAG	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr2_+_102658640_102658669	0.772323	UGCAUAG	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr16_-_4213404_4213404	0.767313	UGCAUAG	ENSMUST00000023165.6|Crebbp|ENSMUSG00000022521.8|CREB binding protein
mm10_v2_chr8_-_25785154_25785215	0.764479	UGCAUAG	ENSMUST00000038498.8|Bag4|ENSMUSG00000037316.8|BCL2-associated athanogene 4
mm10_v2_chr13_+_13590402_13590456	0.728788	UGCAUAG	ENSMUST00000110559.1|Lyst|ENSMUSG00000019726.10|lysosomal trafficking regulator
mm10_v2_chr2_-_5714490_5714538	0.728474	UGCAUAG	ENSMUST00000044009.7|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr1_+_59764264_59764286	0.726186	UGCAUAG	ENSMUST00000087435.5|Bmpr2|ENSMUSG00000067336.5|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm10_v2_chr13_-_101768154_101768217	0.722402	UGCAUAG	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr13_+_12565868_12565883	0.717977	UGCAUAG	ENSMUST00000071973.6|Ero1lb|ENSMUSG00000057069.6|ERO1-like beta (S. cerevisiae)
mm10_v2_chr1_-_173367638_173367695	0.710497	UGCAUAG	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr9_-_54501496_54501644	0.709815	UGCAUAG	ENSMUST00000118600.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2 	ENSMUST00000118163.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2
mm10_v2_chr9_-_52168111_52168111	0.697031	UGCAUAG	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr4_+_100095791_100095867	0.694688	UGCAUAG	ENSMUST00000039630.5|Ror1|ENSMUSG00000035305.5|receptor tyrosine kinase-like orphan receptor 1
mm10_v2_chr1_-_151428440_151428474	0.6881	UGCAUAG	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr3_-_89322883_89322965	0.687388	UGCAUAG	ENSMUST00000029673.5|Efna3|ENSMUSG00000028039.7|ephrin A3
mm10_v2_chr2_-_62412219_62412234	0.675177	UGCAUAG	ENSMUST00000047812.7|Dpp4|ENSMUSG00000035000.8|dipeptidylpeptidase 4
mm10_v2_chr17_-_17624458_17624496	0.662589	UGCAUAG	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr5_-_106696819_106696839	0.661785	UGCAUAG	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr5_-_51553896_51553921	0.656197	UGCAUAG	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr16_-_97922582_97922633	0.655397	UGCAUAG	ENSMUST00000170757.1|C2cd2|ENSMUSG00000045975.7|C2 calcium-dependent domain containing 2
mm10_v2_chr18_-_10181792_10181792	0.644881	UGCAUAG	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr12_+_52516077_52516077	0.641704	UGCAUAG	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr6_+_54816906_54816920	0.639339	UGCAUAG	ENSMUST00000079869.6|Znrf2|ENSMUSG00000058446.8|zinc and ring finger 2
mm10_v2_chr10_-_85127977_85128035	0.630679	UGCAUAG	ENSMUST00000050813.2|Mterfd3|ENSMUSG00000049038.2|MTERF domain containing 3
mm10_v2_chr19_+_40894692_40894736	0.629902	UGCAUAG	ENSMUST00000050092.6|Zfp518a|ENSMUSG00000049164.6|zinc finger protein 518A
mm10_v2_chr11_+_93886157_93886219	0.614763	UGCAUAG	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr13_-_85288999_85289058	0.610673	UGCAUAG	ENSMUST00000109552.2|Rasa1|ENSMUSG00000021549.7|RAS p21 protein activator 1
mm10_v2_chr13_-_63565520_63565520	0.601051	UGCAUAG	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr1_-_190170671_190170744	0.601049	UGCAUAG	ENSMUST00000175916.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr11_+_21091291_21091339	0.600608	UGCAUAG	ENSMUST00000093290.5|Peli1|ENSMUSG00000020134.7|pellino 1
mm10_v2_chr3_-_108146080_108146150	0.599889	UGCAUAG	ENSMUST00000000001.4|Gnai3|ENSMUSG00000000001.4|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm10_v2_chr10_+_7681197_7681225	0.598516	UGCAUAG	ENSMUST00000165952.1|Lats1|ENSMUSG00000040021.6|large tumor suppressor
mm10_v2_chr2_-_120970706_120970761	0.596225	UGCAUAG	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr18_+_64340225_64340364	0.592627	UGCAUAG	ENSMUST00000175965.2|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2 	ENSMUST00000115145.3|Onecut2|ENSMUSG00000045991.12|one cut domain, family member 2
mm10_v2_chrY_-_1245685_1245752	0.588295	UGCAUAG	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr5_+_119670825_119670862	0.588269	UGCAUAG	ENSMUST00000121021.1|Tbx3|ENSMUSG00000018604.12|T-box 3
mm10_v2_chr4_+_11156411_11156453	0.57258	UGCAUAG	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr10_-_109010955_109010983	0.569962	UGCAUAG	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr19_-_59943647_59943678	0.567375	UGCAUAG	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr11_+_79339792_79339913	0.54926	UGCAUAG	ENSMUST00000108251.2|Nf1|ENSMUSG00000020716.9|neurofibromatosis 1 	ENSMUST00000071325.2|Nf1|ENSMUSG00000020716.9|neurofibromatosis 1
mm10_v2_chr2_-_17731035_17731087	0.536687	UGCAUAG	ENSMUST00000028080.5|Nebl|ENSMUSG00000053702.10|nebulette
mm10_v2_chr12_+_4917376_4917438	0.535587	UGCAUAG	ENSMUST00000045664.5|Atad2b|ENSMUSG00000052812.4|ATPase family, AAA domain containing 2B
mm10_v2_chr14_+_45351473_45351473	0.533463	UGCAUAG	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr7_-_67372846_67372858	0.525237	UGCAUAG	ENSMUST00000156690.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000107476.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000076325.5|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000032776.8|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A 	ENSMUST00000133074.1|Mef2a|ENSMUSG00000030557.10|myocyte enhancer factor 2A
mm10_v2_chr9_-_31211805_31211824	0.523513	UGCAUAG	ENSMUST00000072634.7|Aplp2|ENSMUSG00000031996.10|amyloid beta (A4) precursor-like protein 2 	ENSMUST00000079758.7|Aplp2|ENSMUSG00000031996.10|amyloid beta (A4) precursor-like protein 2
mm10_v2_chr19_+_23723279_23723279	0.515054	UGCAUAG	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr2_-_75704535_75704641	0.51492	UGCAUAG	ENSMUST00000102672.4|Nfe2l2|ENSMUSG00000015839.6|nuclear factor, erythroid derived 2, like 2
mm10_v2_chr1_-_106759727_106759748	0.506389	UGCAUAG	ENSMUST00000010049.4|Kdsr|ENSMUSG00000009905.4|3-ketodihydrosphingosine reductase
mm10_v2_chr7_-_127824469_127824580	0.50301	UGCAUAG	ENSMUST00000106267.3|Stx1b|ENSMUSG00000030806.5|syntaxin 1B
mm10_v2_chr11_+_75193783_75193864	0.502025	UGCAUAG	ENSMUST00000102514.3|Rtn4rl1|ENSMUSG00000045287.6|reticulon 4 receptor-like 1
mm10_v2_chr3_-_131344892_131344940	0.497886	UGCAUAG	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr8_+_40511769_40511787	0.49069	UGCAUAG	ENSMUST00000098817.2|Vps37a|ENSMUSG00000031600.10|vacuolar protein sorting 37A (yeast)
mm10_v2_chr3_-_133544390_133544412	0.481808	UGCAUAG	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr6_-_86733268_86733394	0.475416	UGCAUAG	ENSMUST00000001185.7|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr6_+_97807014_97807067	0.475128	UGCAUAG	ENSMUST00000043637.7|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr3_-_85746266_85746266	0.474953	UGCAUAG	ENSMUST00000118408.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr11_+_88068242_88068289	0.466328	UGCAUAG	ENSMUST00000018521.4|Vezf1|ENSMUSG00000018377.4|vascular endothelial zinc finger 1
mm10_v2_chr15_+_34082664_34082734	0.465107	UGCAUAG	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr5_+_43233463_43233491	0.461498	UGCAUAG	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr8_-_121652895_121652913	0.458833	UGCAUAG	ENSMUST00000046386.4|Zcchc14|ENSMUSG00000061410.6|zinc finger, CCHC domain containing 14
mm10_v2_chr3_+_107101551_107101567	0.457403	UGCAUAG	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr4_-_108780782_108780803	0.453038	UGCAUAG	ENSMUST00000106657.1|Zfyve9|ENSMUSG00000034557.8|zinc finger, FYVE domain containing 9
mm10_v2_chr5_-_147076482_147076586	0.443061	UGCAUAG	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr16_-_45724600_45724619	0.439799	UGCAUAG	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr12_+_16894894_16894978	0.435525	UGCAUAG	ENSMUST00000020904.6|Rock2|ENSMUSG00000020580.9|Rho-associated coiled-coil containing protein kinase 2
mm10_v2_chr6_+_95117740_95117880	0.434942	UGCAUAG	ENSMUST00000032107.7|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8 	ENSMUST00000119582.1|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8
mm10_v2_chr5_+_130448801_130448830	0.43263	UGCAUAG	ENSMUST00000111288.2|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chrX_+_82948861_82948915	0.430666	UGCAUAG	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr9_-_106789130_106789213	0.423753	UGCAUAG	ENSMUST00000046502.5|Rad54l2|ENSMUSG00000040661.5|RAD54 like 2 (S. cerevisiae)
mm10_v2_chr18_+_36281069_36281151	0.421845	UGCAUAG	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr2_+_59160884_59161008	0.421314	UGCAUAG	ENSMUST00000037903.8|Pkp4|ENSMUSG00000026991.14|plakophilin 4
mm10_v2_chr7_-_66689589_66689603	0.418241	UGCAUAG	ENSMUST00000124899.1|Asb7|ENSMUSG00000030509.10|ankyrin repeat and SOCS box-containing 7
mm10_v2_chr11_-_104442232_104442291	0.417593	UGCAUAG	ENSMUST00000106977.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1 	ENSMUST00000106972.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1
mm10_v2_chr14_-_25769033_25769083	0.414281	UGCAUAG	ENSMUST00000069180.7|Zcchc24|ENSMUSG00000055538.7|zinc finger, CCHC domain containing 24
mm10_v2_chr9_+_59578192_59578337	0.409799	UGCAUAG	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr2_-_37443096_37443178	0.40585	UGCAUAG	ENSMUST00000102789.2|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000067043.4|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000112932.1|Zbtb6|ENSMUSG00000066798.3|zinc finger and BTB domain containing 6
mm10_v2_chr10_+_44268328_44268379	0.405645	UGCAUAG	ENSMUST00000039286.4|Atg5|ENSMUSG00000038160.6|autophagy related 5
mm10_v2_chr13_+_41249841_41249863	0.404737	UGCAUAG	ENSMUST00000165561.2|Smim13|ENSMUSG00000091264.2|small integral membrane protein 13
mm10_v2_chr12_-_118301429_118301458	0.403467	UGCAUAG	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr1_+_191717834_191717904	0.401479	UGCAUAG	ENSMUST00000110855.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1 	ENSMUST00000133076.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1
mm10_v2_chr12_-_4738375_4738388	0.400661	UGCAUAG	ENSMUST00000111154.2|Fam228a|ENSMUSG00000079177.2|family with sequence similarity 228, member A
mm10_v2_chr7_+_100706702_100706731	0.398614	UGCAUAG	ENSMUST00000049053.7|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr16_+_27388869_27388980	0.394541	UGCAUAG	ENSMUST00000100026.3|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000039443.7|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000096127.4|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50
mm10_v2_chr1_-_13372434_13372457	0.39198	UGCAUAG	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr13_-_58113592_58113620	0.39025	UGCAUAG	ENSMUST00000160860.1|Klhl3|ENSMUSG00000014164.8|kelch-like 3
mm10_v2_chr8_+_35587780_35587825	0.389564	UGCAUAG	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr5_-_143180721_143180795	0.38768	UGCAUAG	ENSMUST00000164068.1|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor 	ENSMUST00000049861.4|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor 	ENSMUST00000165318.1|Rbak|ENSMUSG00000061898.4|RB-associated KRAB repressor
mm10_v2_chr17_+_43801823_43801863	0.387648	UGCAUAG	ENSMUST00000044895.5|Rcan2|ENSMUSG00000039601.9|regulator of calcineurin 2
mm10_v2_chr18_-_46525940_46525999	0.386958	UGCAUAG	ENSMUST00000036226.5|Fem1c|ENSMUSG00000033319.5|fem-1 homolog c (C.elegans)
mm10_v2_chr2_-_72980402_72980471	0.386231	UGCAUAG	ENSMUST00000066003.6|Sp3|ENSMUSG00000027109.10|trans-acting transcription factor 3 	ENSMUST00000102689.3|Sp3|ENSMUSG00000027109.10|trans-acting transcription factor 3
mm10_v2_chr10_-_81427114_81427187	0.385235	UGCAUAG	ENSMUST00000078185.7|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000020461.8|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000105321.3|Nfic|ENSMUSG00000055053.11|nuclear factor I/C
mm10_v2_chr17_+_14943184_14943281	0.38475	UGCAUAG	ENSMUST00000052691.8|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000164837.2|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000174004.1|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene
mm10_v2_chr4_-_4793275_4793382	0.383265	UGCAUAG	ENSMUST00000084949.2|Impad1|ENSMUSG00000066324.2|inositol monophosphatase domain containing 1
mm10_v2_chr3_-_142881942_142882017	0.382709	UGCAUAG	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr8_+_56551090_56551143	0.377453	UGCAUAG	ENSMUST00000040218.5|Fbxo8|ENSMUSG00000038206.6|F-box protein 8 	ENSMUST00000110322.3|Fbxo8|ENSMUSG00000038206.6|F-box protein 8
mm10_v2_chr11_+_58009064_58009144	0.375073	UGCAUAG	ENSMUST00000071487.6|Larp1|ENSMUSG00000037331.9|La ribonucleoprotein domain family, member 1 	ENSMUST00000178636.1|Larp1|ENSMUSG00000037331.9|La ribonucleoprotein domain family, member 1
mm10_v2_chr3_-_69127098_69127113	0.36755	UGCAUAG	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr19_+_44989073_44989101	0.363768	UGCAUAG	ENSMUST00000026225.8|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr11_+_102041509_102041531	0.357956	UGCAUAG	ENSMUST00000123895.1|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000017453.5|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000107163.2|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G 	ENSMUST00000107164.2|Cd300lg|ENSMUSG00000017309.5|CD300 antigen like family member G
mm10_v2_chr18_-_21300129_21300168	0.355898	UGCAUAG	ENSMUST00000049260.6|Garem|ENSMUSG00000042680.7|GRB2 associated, regulator of MAPK1
mm10_v2_chr14_+_67716095_67716151	0.354543	UGCAUAG	ENSMUST00000078053.6|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000145542.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000125212.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9
mm10_v2_chr1_-_165934900_165935036	0.339777	UGCAUAG	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr8_+_79639618_79639730	0.339083	UGCAUAG	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr18_+_8694077_8694077	0.334181	UGCAUAG	ENSMUST00000171469.1|Gm5819|ENSMUSG00000092097.1|predicted gene 5819
mm10_v2_chr13_+_13954614_13954691	0.333569	UGCAUAG	ENSMUST00000099747.3|B3galnt2|ENSMUSG00000039242.9|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
mm10_v2_chr5_+_65107551_65107582	0.329992	UGCAUAG	ENSMUST00000101192.2|Klhl5|ENSMUSG00000054920.6|kelch-like 5
mm10_v2_chr6_+_108213086_108213123	0.328232	UGCAUAG	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr7_-_47008397_47008421	0.324951	UGCAUAG	ENSMUST00000061639.7|Spty2d1|ENSMUSG00000049516.7|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm10_v2_chr10_-_86498836_86498858	0.32475	UGCAUAG	ENSMUST00000120638.1|Syn3|ENSMUSG00000059602.8|synapsin III
mm10_v2_chr2_+_37452231_37452286	0.322987	UGCAUAG	ENSMUST00000148470.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000066055.3|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000112920.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1
mm10_v2_chr15_-_53346118_53346169	0.322509	UGCAUAG	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr11_-_50325599_50325673	0.318893	UGCAUAG	ENSMUST00000179865.1|Canx|ENSMUSG00000020368.9|calnexin 	ENSMUST00000020637.8|Canx|ENSMUSG00000020368.9|calnexin
mm10_v2_chr12_+_111039334_111039400	0.318028	UGCAUAG	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr16_+_44139821_44139900	0.317724	UGCAUAG	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr14_-_103099499_103099554	0.313241	UGCAUAG	ENSMUST00000022720.8|Fbxl3|ENSMUSG00000022124.8|F-box and leucine-rich repeat protein 3
mm10_v2_chr2_-_167188787_167188815	0.310158	UGCAUAG	ENSMUST00000059826.8|Kcnb1|ENSMUSG00000050556.8|potassium voltage gated channel, Shab-related subfamily, member 1
mm10_v2_chr11_-_100650693_100650749	0.305009	UGCAUAG	ENSMUST00000103119.3|Zfp385c|ENSMUSG00000014198.9|zinc finger protein 385C
mm10_v2_chr10_+_62980233_62980262	0.304802	UGCAUAG	ENSMUST00000131718.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2 	ENSMUST00000119567.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2 	ENSMUST00000122231.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2
mm10_v2_chr5_+_72914264_72914304	0.304356	UGCAUAG	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr2_+_76675265_76675287	0.297771	UGCAUAG	ENSMUST00000111920.1|Plekha3|ENSMUSG00000002733.8|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm10_v2_chr12_+_71015966_71016063	0.297467	UGCAUAG	ENSMUST00000046305.5|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr10_-_125328957_125328968	0.296309	UGCAUAG	ENSMUST00000063318.2|Slc16a7|ENSMUSG00000020102.8|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm10_v2_chr16_-_94313556_94313577	0.295046	UGCAUAG	ENSMUST00000163193.1|Hlcs|ENSMUSG00000040820.9|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm10_v2_chr8_-_60983215_60983319	0.294615	UGCAUAG	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr18_-_84086379_84086404	0.293087	UGCAUAG	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr1_-_16519284_16519336	0.292721	UGCAUAG	ENSMUST00000162751.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000027052.6|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000149320.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr6_-_126645784_126645801	0.288438	UGCAUAG	ENSMUST00000055168.3|Kcna1|ENSMUSG00000047976.3|potassium voltage-gated channel, shaker-related subfamily, member 1
mm10_v2_chr1_+_105990384_105990498	0.288292	UGCAUAG	ENSMUST00000119166.1|Zcchc2|ENSMUSG00000038866.9|zinc finger, CCHC domain containing 2
mm10_v2_chr1_-_156036473_156036480	0.28789	UGCAUAG	ENSMUST00000097527.3|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1 	ENSMUST00000027738.7|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr5_+_77265454_77265549	0.287822	UGCAUAG	ENSMUST00000080359.5|Rest|ENSMUSG00000029249.9|RE1-silencing transcription factor
mm10_v2_chr5_+_107497718_107497759	0.285517	UGCAUAG	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr15_+_6708372_6708396	0.282315	UGCAUAG	ENSMUST00000061656.6|Rictor|ENSMUSG00000050310.8|RPTOR independent companion of MTOR, complex 2
mm10_v2_chr10_-_123076367_123076505	0.282024	UGCAUAG	ENSMUST00000073792.3|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast) 	ENSMUST00000170935.1|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast) 	ENSMUST00000037557.7|Mon2|ENSMUSG00000034602.7|MON2 homolog (yeast)
mm10_v2_chr5_+_93093428_93093457	0.28047	UGCAUAG	ENSMUST00000074733.7|Sept11|ENSMUSG00000058013.8|septin 11
mm10_v2_chr8_-_34965631_34965714	0.277117	UGCAUAG	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr7_-_133123312_133123377	0.275288	UGCAUAG	ENSMUST00000171022.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000163601.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000165534.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000124096.1|Fgfr2|ENSMUSG00000030849.11|fibroblast growth factor receptor 2 	ENSMUST00000033269.8|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr5_-_69592311_69592337	0.274624	UGCAUAG	ENSMUST00000031117.6|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr10_-_71238274_71238288	0.273439	UGCAUAG	ENSMUST00000092430.4|Tfam|ENSMUSG00000003923.8|transcription factor A, mitochondrial 	ENSMUST00000105432.3|Tfam|ENSMUSG00000003923.8|transcription factor A, mitochondrial
mm10_v2_chr12_+_71831064_71831178	0.272339	UGCAUAG	ENSMUST00000085299.2|Daam1|ENSMUSG00000034574.9|dishevelled associated activator of morphogenesis 1
mm10_v2_chr9_-_105495037_105495117	0.271748	UGCAUAG	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr2_+_136713444_136713492	0.271437	UGCAUAG	ENSMUST00000028727.4|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25 	ENSMUST00000110098.3|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25
mm10_v2_chr14_+_49066495_49066587	0.27	UGCAUAG	ENSMUST00000037473.4|Ap5m1|ENSMUSG00000036291.5|adaptor-related protein complex 5, mu 1 subunit
mm10_v2_chr13_+_23807027_23807063	0.267134	UGCAUAG	ENSMUST00000006786.4|Slc17a2|ENSMUSG00000036110.8|solute carrier family 17 (sodium phosphate), member 2 	ENSMUST00000099697.2|Slc17a2|ENSMUSG00000036110.8|solute carrier family 17 (sodium phosphate), member 2
mm10_v2_chr7_+_49246812_49246844	0.262223	UGCAUAG	ENSMUST00000184945.1|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr13_+_41606216_41606216	0.26187	UGCAUAG	ENSMUST00000129449.1|Tmem170b|ENSMUSG00000087370.2|transmembrane protein 170B
mm10_v2_chr14_-_121797670_121797753	0.259521	UGCAUAG	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr10_+_58446845_58446928	0.255815	UGCAUAG	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr3_-_51560816_51560878	0.254972	UGCAUAG	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr11_-_107131922_107131954	0.254557	UGCAUAG	ENSMUST00000057892.8|Bptf|ENSMUSG00000040481.10|bromodomain PHD finger transcription factor
mm10_v2_chr11_-_98329641_98329654	0.253553	UGCAUAG	ENSMUST00000041685.6|Neurod2|ENSMUSG00000038255.6|neurogenic differentiation 2
mm10_v2_chr9_-_54560138_54560225	0.251892	UGCAUAG	ENSMUST00000041901.6|Cib2|ENSMUSG00000037493.6|calcium and integrin binding family member 2
mm10_v2_chr12_+_95692212_95692246	0.250515	UGCAUAG	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chr3_+_96104498_96104571	0.250506	UGCAUAG	ENSMUST00000132980.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000138206.1|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000090785.2|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B 	ENSMUST00000035519.5|Otud7b|ENSMUSG00000038495.8|OTU domain containing 7B
mm10_v2_chr6_-_13608011_13608100	0.249658	UGCAUAG	ENSMUST00000031554.2|Tmem168|ENSMUSG00000029569.3|transmembrane protein 168
mm10_v2_chr5_-_66618772_66618828	0.248418	UGCAUAG	ENSMUST00000162994.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159512.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159786.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2
mm10_v2_chr15_-_66286224_66286224	0.248385	UGCAUAG	ENSMUST00000070256.7|Kcnq3|ENSMUSG00000056258.8|potassium voltage-gated channel, subfamily Q, member 3
mm10_v2_chr5_-_49524809_49524904	0.247495	UGCAUAG	ENSMUST00000087395.4|Kcnip4|ENSMUSG00000029088.10|Kv channel interacting protein 4
mm10_v2_chr11_-_86757483_86757572	0.246609	UGCAUAG	ENSMUST00000060766.9|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc) 	ENSMUST00000103186.4|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc)
mm10_v2_chr2_-_52676571_52676588	0.244099	UGCAUAG	ENSMUST00000178799.1|Cacnb4|ENSMUSG00000017412.9|calcium channel, voltage-dependent, beta 4 subunit
mm10_v2_chr12_+_64917901_64917944	0.242418	UGCAUAG	ENSMUST00000058135.4|Gm527|ENSMUSG00000047227.4|predicted gene 527
mm10_v2_chrX_+_18162575_18162657	0.241021	UGCAUAG	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr1_-_43827751_43827800	0.23929	UGCAUAG	ENSMUST00000128261.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000126008.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1 	ENSMUST00000139451.1|Uxs1|ENSMUSG00000057363.6|UDP-glucuronate decarboxylase 1
mm10_v2_chr10_-_115384388_115384435	0.238242	UGCAUAG	ENSMUST00000020346.4|Thap2|ENSMUSG00000020137.4|THAP domain containing, apoptosis associated protein 2
mm10_v2_chr7_+_120677579_120677630	0.237294	UGCAUAG	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr4_-_129227883_129227923	0.236678	UGCAUAG	ENSMUST00000106051.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr7_-_121707253_121707460	0.234784	UGCAUAG	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chrX_+_136707976_136708040	0.233448	UGCAUAG	ENSMUST00000055104.5|Tceal1|ENSMUSG00000049536.5|transcription elongation factor A (SII)-like 1
mm10_v2_chr2_+_155381808_155381884	0.232959	UGCAUAG	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr3_+_103914560_103914605	0.231745	UGCAUAG	ENSMUST00000106806.1|Rsbn1|ENSMUSG00000044098.8|rosbin, round spermatid basic protein 1
mm10_v2_chr15_-_10713537_10713544	0.227361	UGCAUAG	ENSMUST00000090339.3|Rai14|ENSMUSG00000022246.7|retinoic acid induced 14
mm10_v2_chr8_+_106059562_106059623	0.226622	UGCAUAG	ENSMUST00000109308.1|Nfatc3|ENSMUSG00000031902.9|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm10_v2_chr4_+_53440516_53440684	0.224617	UGCAUAG	ENSMUST00000107651.2|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1 	ENSMUST00000107647.1|Slc44a1|ENSMUSG00000028412.11|solute carrier family 44, member 1
mm10_v2_chrX_+_68678541_68678554	0.223722	UGCAUAG	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr13_-_17805093_17805189	0.223539	UGCAUAG	ENSMUST00000042365.7|Cdk13|ENSMUSG00000041297.7|cyclin-dependent kinase 13
mm10_v2_chr17_-_10319324_10319380	0.221561	UGCAUAG	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr11_-_86544754_86544805	0.219281	UGCAUAG	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr10_-_95564167_95564181	0.218389	UGCAUAG	ENSMUST00000020217.5|Nudt4|ENSMUSG00000020029.5|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm10_v2_chr11_-_5261558_5261637	0.215193	UGCAUAG	ENSMUST00000020662.8|Kremen1|ENSMUSG00000020393.10|kringle containing transmembrane protein 1
mm10_v2_chrX_-_13846508_13846591	0.211863	UGCAUAG	ENSMUST00000115436.2|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000033321.4|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000115438.3|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm10_v2_chr13_-_24831409_24831518	0.209864	UGCAUAG	ENSMUST00000006900.6|Acot13|ENSMUSG00000006717.6|acyl-CoA thioesterase 13
mm10_v2_chr5_-_41844168_41844329	0.209299	UGCAUAG	ENSMUST00000050556.7|Bod1l|ENSMUSG00000061755.7|biorientation of chromosomes in cell division 1-like
mm10_v2_chr10_-_95416850_95416861	0.204657	UGCAUAG	ENSMUST00000020215.9|Socs2|ENSMUSG00000020027.12|suppressor of cytokine signaling 2
mm10_v2_chr17_-_66519666_66519727	0.204206	UGCAUAG	ENSMUST00000167962.1|Rab12|ENSMUSG00000023460.6|RAB12, member RAS oncogene family 	ENSMUST00000070538.4|Rab12|ENSMUSG00000023460.6|RAB12, member RAS oncogene family
mm10_v2_chr5_+_86804214_86804276	0.201142	UGCAUAG	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr2_-_73312701_73312724	0.200604	UGCAUAG	ENSMUST00000058615.9|Cir1|ENSMUSG00000041777.11|corepressor interacting with RBPJ, 1
mm10_v2_chr18_-_14682756_14682914	0.196799	UGCAUAG	ENSMUST00000040964.6|Ss18|ENSMUSG00000037013.9|synovial sarcoma translocation, Chromosome 18 	ENSMUST00000092041.3|Ss18|ENSMUSG00000037013.9|synovial sarcoma translocation, Chromosome 18 	ENSMUST00000040924.7|Ss18|ENSMUSG00000037013.9|synovial sarcoma translocation, Chromosome 18
mm10_v2_chr16_-_21694570_21694665	0.196403	UGCAUAG	ENSMUST00000053336.7|2510009E07Rik|ENSMUSG00000043391.9|RIKEN cDNA 2510009E07 gene
mm10_v2_chr11_+_20543307_20543336	0.195987	UGCAUAG	ENSMUST00000093292.4|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr2_+_156196642_156196775	0.195693	UGCAUAG	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr2_-_33468493_33468572	0.194768	UGCAUAG	ENSMUST00000113156.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000028125.5|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43 	ENSMUST00000126442.1|Zbtb43|ENSMUSG00000026788.7|zinc finger and BTB domain containing 43
mm10_v2_chr3_+_116594959_116595031	0.194464	UGCAUAG	ENSMUST00000029571.8|Sass6|ENSMUSG00000027959.9|spindle assembly 6 homolog (C. elegans)
mm10_v2_chr8_-_80739497_80739497	0.189747	UGCAUAG	ENSMUST00000043359.8|Smarca5|ENSMUSG00000031715.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm10_v2_chr6_+_145211134_145211222	0.188607	UGCAUAG	ENSMUST00000111725.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111726.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000039729.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111723.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111724.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111721.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111719.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5
mm10_v2_chr9_-_82975475_82975493	0.186219	UGCAUAG	ENSMUST00000034787.5|Phip|ENSMUSG00000032253.7|pleckstrin homology domain interacting protein
mm10_v2_chr1_-_170867761_170867784	0.184737	UGCAUAG	ENSMUST00000027974.6|Atf6|ENSMUSG00000026663.6|activating transcription factor 6
mm10_v2_chr2_+_48814109_48814173	0.183822	UGCAUAG	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chr1_-_93478785_93478823	0.180297	UGCAUAG	ENSMUST00000170883.1|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chr11_+_77686155_77686179	0.180097	UGCAUAG	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr2_-_73892530_73892555	0.179651	UGCAUAG	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr13_-_17944151_17944239	0.179492	UGCAUAG	ENSMUST00000009003.7|Rala|ENSMUSG00000008859.7|v-ral simian leukemia viral oncogene homolog A (ras related)
mm10_v2_chr8_+_46739745_46739791	0.178714	UGCAUAG	ENSMUST00000034041.7|Irf2|ENSMUSG00000031627.7|interferon regulatory factor 2
mm10_v2_chr4_-_143212691_143212728	0.177542	UGCAUAG	ENSMUST00000105778.1|Prdm2|ENSMUSG00000057637.7|PR domain containing 2, with ZNF domain 	ENSMUST00000134791.1|Prdm2|ENSMUSG00000057637.7|PR domain containing 2, with ZNF domain
mm10_v2_chr15_-_75747922_75747922	0.177494	UGCAUAG	ENSMUST00000062002.4|Mafa|ENSMUSG00000047591.4|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)
mm10_v2_chr11_-_30268169_30268191	0.173851	UGCAUAG	ENSMUST00000006629.7|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr12_-_102878406_102878449	0.173772	UGCAUAG	ENSMUST00000045652.6|Btbd7|ENSMUSG00000041702.6|BTB (POZ) domain containing 7
mm10_v2_chr7_+_123123870_123123901	0.173734	UGCAUAG	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr14_-_105176860_105176918	0.173721	UGCAUAG	ENSMUST00000163545.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr14_+_16365171_16365194	0.169759	UGCAUAG	ENSMUST00000017629.4|Top2b|ENSMUSG00000017485.4|topoisomerase (DNA) II beta
mm10_v2_chr4_+_116720920_116721004	0.16677	UGCAUAG	ENSMUST00000045542.6|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2 	ENSMUST00000106459.1|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2
mm10_v2_chr10_-_49788743_49788769	0.165397	UGCAUAG	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr11_+_72796164_72796246	0.162777	UGCAUAG	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr3_+_32529452_32529527	0.15938	UGCAUAG	ENSMUST00000091257.4|Mfn1|ENSMUSG00000027668.7|mitofusin 1
mm10_v2_chr3_+_34020075_34020082	0.158759	UGCAUAG	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr1_-_64121456_64121491	0.158011	UGCAUAG	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr16_+_93832121_93832308	0.154254	UGCAUAG	ENSMUST00000044068.6|Morc3|ENSMUSG00000039456.6|microrchidia 3
mm10_v2_chr13_+_24801657_24801657	0.149753	UGCAUAG	ENSMUST00000019276.4|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr6_+_8209216_8209263	0.148331	UGCAUAG	ENSMUST00000040017.7|Mios|ENSMUSG00000042447.7|missing oocyte, meiosis regulator, homolog (Drosophila)
mm10_v2_chr1_+_9798123_9798216	0.147329	UGCAUAG	ENSMUST00000168907.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3 	ENSMUST00000166384.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr19_-_55315980_55316038	0.146473	UGCAUAG	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr4_-_41741301_41741359	0.144623	UGCAUAG	ENSMUST00000071561.6|Sigmar1|ENSMUSG00000036078.10|sigma non-opioid intracellular receptor 1 	ENSMUST00000059354.8|Sigmar1|ENSMUSG00000036078.10|sigma non-opioid intracellular receptor 1
mm10_v2_chr10_+_84917616_84917656	0.142492	UGCAUAG	ENSMUST00000038523.7|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 	ENSMUST00000095385.3|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm10_v2_chr12_+_81859964_81860036	0.14234	UGCAUAG	ENSMUST00000021567.5|Pcnx|ENSMUSG00000021140.8|pecanex homolog (Drosophila)
mm10_v2_chr4_+_54947976_54948054	0.141069	UGCAUAG	ENSMUST00000098070.3|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr11_+_31872100_31872226	0.14093	UGCAUAG	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr3_-_69859875_69859901	0.13527	UGCAUAG	ENSMUST00000051239.7|Sptssb|ENSMUSG00000043461.7|serine palmitoyltransferase, small subunit B 	ENSMUST00000171529.1|Sptssb|ENSMUSG00000043461.7|serine palmitoyltransferase, small subunit B
mm10_v2_chr16_-_85173692_85173718	0.134814	UGCAUAG	ENSMUST00000005406.10|App|ENSMUSG00000022892.10|amyloid beta (A4) precursor protein
mm10_v2_chr8_+_105170668_105170686	0.13396	UGCAUAG	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr13_+_16014457_16014475	0.13298	UGCAUAG	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr4_+_129947721_129947721	0.132842	UGCAUAG	ENSMUST00000084263.4|Spocd1|ENSMUSG00000028784.7|SPOC domain containing 1
mm10_v2_chr2_-_137116624_137116644	0.132789	UGCAUAG	ENSMUST00000028735.7|Jag1|ENSMUSG00000027276.7|jagged 1
mm10_v2_chr3_-_32737147_32737147	0.131511	UGCAUAG	ENSMUST00000043966.7|Mrpl47|ENSMUSG00000037531.7|mitochondrial ribosomal protein L47
mm10_v2_chr5_+_108065742_108065767	0.129716	UGCAUAG	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr6_-_88045190_88045270	0.128096	UGCAUAG	ENSMUST00000113596.1|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family 	ENSMUST00000113600.3|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family
mm10_v2_chr8_+_13159135_13159168	0.121691	UGCAUAG	ENSMUST00000033824.6|Lamp1|ENSMUSG00000031447.6|lysosomal-associated membrane protein 1
mm10_v2_chr10_+_108162358_108162408	0.120374	UGCAUAG	ENSMUST00000070663.5|Ppp1r12a|ENSMUSG00000019907.9|protein phosphatase 1, regulatory (inhibitor) subunit 12A
mm10_v2_chr5_-_122779278_122779434	0.120098	UGCAUAG	ENSMUST00000111668.3|Camkk2|ENSMUSG00000029471.9|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm10_v2_chr5_+_30588078_30588171	0.118817	UGCAUAG	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr9_+_48985358_48985451	0.118415	UGCAUAG	ENSMUST00000047349.6|Usp28|ENSMUSG00000032267.7|ubiquitin specific peptidase 28
mm10_v2_chr17_+_25188380_25188418	0.11688	UGCAUAG	ENSMUST00000039734.5|Unkl|ENSMUSG00000015127.8|unkempt-like (Drosophila)
mm10_v2_chr19_+_30030439_30030528	0.114659	UGCAUAG	ENSMUST00000025739.7|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr8_-_69996326_69996379	0.108487	UGCAUAG	ENSMUST00000177851.1|Gatad2a|ENSMUSG00000036180.8|GATA zinc finger domain containing 2A 	ENSMUST00000065169.4|Gatad2a|ENSMUSG00000036180.8|GATA zinc finger domain containing 2A
mm10_v2_chr15_-_38519227_38519271	0.105415	UGCAUAG	ENSMUST00000110328.1|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1 	ENSMUST00000110329.1|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1 	ENSMUST00000065308.5|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1
mm10_v2_chr17_-_12318660_12318684	0.1034	UGCAUAG	ENSMUST00000089058.5|Map3k4|ENSMUSG00000014426.8|mitogen-activated protein kinase kinase kinase 4
mm10_v2_chr16_+_33380765_33380787	0.102333	UGCAUAG	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr12_-_75177325_75177359	0.102247	UGCAUAG	ENSMUST00000042299.2|Kcnh5|ENSMUSG00000034402.2|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm10_v2_chr11_+_95712673_95712673	0.102216	UGCAUAG	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr4_+_31964081_31964263	0.10158	UGCAUAG	ENSMUST00000037607.4|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000080933.6|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108183.1|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7 	ENSMUST00000108184.2|Map3k7|ENSMUSG00000028284.7|mitogen-activated protein kinase kinase kinase 7
mm10_v2_chr16_-_50432340_50432409	0.0981079	UGCAUAG	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr1_-_138842429_138842457	0.0967192	UGCAUAG	ENSMUST00000112026.2|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9 	ENSMUST00000019374.7|Lhx9|ENSMUSG00000019230.8|LIM homeobox protein 9
mm10_v2_chr11_+_51763682_51763749	0.0947751	UGCAUAG	ENSMUST00000020653.5|Sar1b|ENSMUSG00000020386.5|SAR1 gene homolog B (S. cerevisiae)
mm10_v2_chr13_+_119428888_119428960	0.0928235	UGCAUAG	ENSMUST00000026520.7|Paip1|ENSMUSG00000025451.9|polyadenylate binding protein-interacting protein 1
mm10_v2_chr19_+_3767397_3767523	0.0919388	UGCAUAG	ENSMUST00000113974.4|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113972.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113973.1|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113977.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000052699.6|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113968.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm10_v2_chr12_-_80436571_80436603	0.0900826	UGCAUAG	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr4_+_123904832_123904851	0.0876977	UGCAUAG	ENSMUST00000030400.7|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr18_-_31447383_31447415	0.0865277	UGCAUAG	ENSMUST00000025110.3|Syt4|ENSMUSG00000024261.5|synaptotagmin IV
mm10_v2_chr13_+_49682100_49682169	0.0860544	UGCAUAG	ENSMUST00000165316.1|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase 	ENSMUST00000047363.7|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase
mm10_v2_chr11_-_94677404_94677515	0.0855039	UGCAUAG	ENSMUST00000116349.2|Xylt2|ENSMUSG00000020868.9|xylosyltransferase II
mm10_v2_chr16_+_42907563_42907684	0.0851286	UGCAUAG	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr7_-_80402743_80402762	0.0773851	UGCAUAG	ENSMUST00000122232.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr18_+_88971790_88971790	0.0769802	UGCAUAG	ENSMUST00000023828.7|Rttn|ENSMUSG00000023066.9|rotatin
mm10_v2_chr4_-_128962420_128962449	0.0761967	UGCAUAG	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr13_-_12106945_12106984	0.0737517	UGCAUAG	ENSMUST00000021750.7|Ryr2|ENSMUSG00000021313.9|ryanodine receptor 2, cardiac 	ENSMUST00000170156.2|Ryr2|ENSMUSG00000021313.9|ryanodine receptor 2, cardiac
mm10_v2_chr15_-_58214882_58214926	0.0711961	UGCAUAG	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr16_-_10788649_10788668	0.0706028	UGCAUAG	ENSMUST00000051297.7|Tnp2|ENSMUSG00000043050.7|transition protein 2
mm10_v2_chr4_+_57434247_57434368	0.07005	UGCAUAG	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr14_-_74947865_74947883	0.0666132	UGCAUAG	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr1_+_127868773_127868807	0.066022	UGCAUAG	ENSMUST00000037649.5|Rab3gap1|ENSMUSG00000036104.5|RAB3 GTPase activating protein subunit 1
mm10_v2_chr19_+_32757497_32757587	0.0658868	UGCAUAG	ENSMUST00000013807.7|Pten|ENSMUSG00000013663.7|phosphatase and tensin homolog
mm10_v2_chr14_-_26971232_26971232	0.0656162	UGCAUAG	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr2_+_3284202_3284220	0.063265	UGCAUAG	ENSMUST00000081932.6|Nmt2|ENSMUSG00000026643.10|N-myristoyltransferase 2
mm10_v2_chr2_-_63184253_63184292	0.0612634	UGCAUAG	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr4_+_122995944_122995958	0.0607985	UGCAUAG	ENSMUST00000106252.2|Mycl|ENSMUSG00000028654.7|v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)
mm10_v2_chr11_+_110399115_110399155	0.0605077	UGCAUAG	ENSMUST00000020949.5|Map2k6|ENSMUSG00000020623.5|mitogen-activated protein kinase kinase 6 	ENSMUST00000100260.1|Map2k6|ENSMUSG00000020623.5|mitogen-activated protein kinase kinase 6
mm10_v2_chr5_-_110448486_110448519	0.0597466	UGCAUAG	ENSMUST00000069483.5|Fbrsl1|ENSMUSG00000043323.10|fibrosin-like 1
mm10_v2_chr7_-_45717919_45718002	0.0580767	UGCAUAG	ENSMUST00000107737.2|Sphk2|ENSMUSG00000057342.7|sphingosine kinase 2
mm10_v2_chr6_-_55681257_55681271	0.0570727	UGCAUAG	ENSMUST00000044767.8|Neurod6|ENSMUSG00000037984.8|neurogenic differentiation 6
mm10_v2_chr9_-_16378231_16378231	0.0559482	UGCAUAG	ENSMUST00000082170.5|Fat3|ENSMUSG00000074505.4|FAT tumor suppressor homolog 3 (Drosophila)
mm10_v2_chr18_+_61555258_61555290	0.0554727	UGCAUAG	ENSMUST00000165123.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1
mm10_v2_chr11_+_94327984_94328029	0.0551071	UGCAUAG	ENSMUST00000107818.2|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40 	ENSMUST00000051221.6|Ankrd40|ENSMUSG00000020864.7|ankyrin repeat domain 40
mm10_v2_chr12_+_111166349_111166397	0.0529814	UGCAUAG	ENSMUST00000117269.1|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr14_+_8098196_8098296	0.0529169	UGCAUAG	ENSMUST00000112689.2|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase 	ENSMUST00000036682.7|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase
mm10_v2_chr4_+_53631460_53631505	0.0515546	UGCAUAG	ENSMUST00000179534.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like 	ENSMUST00000132151.1|Fsd1l|ENSMUSG00000054752.10|fibronectin type III and SPRY domain containing 1-like
mm10_v2_chr3_+_54156039_54156074	0.0506637	UGCAUAG	ENSMUST00000029311.6|Trpc4|ENSMUSG00000027748.7|transient receptor potential cation channel, subfamily C, member 4
mm10_v2_chrX_+_161162744_161162775	0.0498398	UGCAUAG	ENSMUST00000074802.5|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila) 	ENSMUST00000019101.4|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila) 	ENSMUST00000112345.1|Scml2|ENSMUSG00000000037.10|sex comb on midleg-like 2 (Drosophila)
mm10_v2_chr4_+_124802543_124802678	0.0464276	UGCAUAG	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr1_-_166002591_166002609	0.0462656	UGCAUAG	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr1_+_5588493_5588557	0.0449974	UGCAUAG	ENSMUST00000160777.1|Oprk1|ENSMUSG00000025905.7|opioid receptor, kappa 1 	ENSMUST00000027038.4|Oprk1|ENSMUSG00000025905.7|opioid receptor, kappa 1
mm10_v2_chr10_-_121311034_121311189	0.0408005	UGCAUAG	ENSMUST00000064107.5|Tbc1d30|ENSMUSG00000052302.5|TBC1 domain family, member 30
mm10_v2_chr3_+_121426495_121426541	0.0398726	UGCAUAG	ENSMUST00000029773.8|Cnn3|ENSMUSG00000053931.7|calponin 3, acidic
mm10_v2_chr17_+_3114957_3114982	0.0370676	UGCAUAG	ENSMUST00000076734.6|Scaf8|ENSMUSG00000046201.8|SR-related CTD-associated factor 8
mm10_v2_chr2_+_21367532_21367542	0.0365393	UGCAUAG	ENSMUST00000055946.7|Gpr158|ENSMUSG00000045967.11|G protein-coupled receptor 158
mm10_v2_chr11_+_29692937_29692997	0.036062	UGCAUAG	ENSMUST00000102843.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000102842.3|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000078830.4|Rtn4|ENSMUSG00000020458.10|reticulon 4 	ENSMUST00000170731.1|Rtn4|ENSMUSG00000020458.10|reticulon 4
mm10_v2_chr4_-_14621805_14621819	0.0339452	UGCAUAG	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr12_+_29938036_29938059	0.0323047	UGCAUAG	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr8_+_9977707_9977725	0.0317857	UGCAUAG	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr4_+_32657107_32657166	0.0304321	UGCAUAG	ENSMUST00000071642.4|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast) 	ENSMUST00000178134.1|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast)
mm10_v2_chr3_-_89387132_89387189	0.0294115	UGCAUAG	ENSMUST00000107433.1|Zbtb7b|ENSMUSG00000028042.9|zinc finger and BTB domain containing 7B
mm10_v2_chr10_-_117148474_117148510	0.029086	UGCAUAG	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr12_-_59219725_59219776	0.0245755	UGCAUAG	ENSMUST00000043204.7|Fbxo33|ENSMUSG00000035329.7|F-box protein 33
mm10_v2_chr3_+_55242526_55242555	0.0240361	UGCAUAG	ENSMUST00000054237.7|Dclk1|ENSMUSG00000027797.9|doublecortin-like kinase 1 	ENSMUST00000167204.1|Dclk1|ENSMUSG00000027797.9|doublecortin-like kinase 1
mm10_v2_chr17_+_85613432_85613608	0.0213548	UGCAUAG	ENSMUST00000176081.1|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr6_-_39206782_39206831	0.0198097	UGCAUAG	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr18_+_69345721_69345811	0.0182346	UGCAUAG	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr13_+_5861489_5861501	0.0171125	UGCAUAG	ENSMUST00000000080.6|Klf6|ENSMUSG00000000078.6|Kruppel-like factor 6
mm10_v2_chr9_-_44881274_44881323	0.016309	UGCAUAG	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr17_-_27820534_27820572	0.0116711	UGCAUAG	ENSMUST00000075076.4|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed 	ENSMUST00000114863.2|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed
mm10_v2_chr8_-_57653023_57653039	0.0114393	UGCAUAG	ENSMUST00000034021.5|Galnt7|ENSMUSG00000031608.7|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm10_v2_chr1_-_3671498_3671498	0.0106144	UGCAUAG	ENSMUST00000070533.4|Xkr4|ENSMUSG00000051951.5|X Kell blood group precursor related family member 4
mm10_v2_chr11_+_98863610_98863646	0.0101535	UGCAUAG	ENSMUST00000142414.1|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2 	ENSMUST00000037480.8|Wipf2|ENSMUSG00000038013.8|WAS/WASL interacting protein family, member 2
mm10_v2_chr3_+_52268337_52268388	0.00927793	UGCAUAG	ENSMUST00000053764.5|Foxo1|ENSMUSG00000044167.5|forkhead box O1
mm10_v2_chr16_+_56075399_56075492	0.00855537	UGCAUAG	ENSMUST00000089362.2|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000089360.3|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000049128.6|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7
mm10_v2_chr16_+_37539883_37539918	0.00561527	UGCAUAG	ENSMUST00000023524.6|Rabl3|ENSMUSG00000022827.8|RAB, member of RAS oncogene family-like 3
mm10_v2_chr18_-_72351029_72351073	0.00370411	UGCAUAG	ENSMUST00000114943.3|Dcc|ENSMUSG00000060534.9|deleted in colorectal carcinoma
mm10_v2_chr6_-_91807424_91807456	0.00135403	UGCAUAG	ENSMUST00000162300.1|Grip2|ENSMUSG00000030098.9|glutamate receptor interacting protein 2
mm10_v2_chr13_-_105054895_105054930	0.000425887	UGCAUAG	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
