mm10_v2_chr10_-_45470201_45470260	1.68787	UAAGACG	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr11_+_44617310_44617336	1.03569	UAAGACG	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr11_+_98907801_98907824	0.932164	UAAGACG	ENSMUST00000092706.6|Cdc6|ENSMUSG00000017499.9|cell division cycle 6
mm10_v2_chr14_-_31577318_31577383	0.86189	UAAGACG	ENSMUST00000112027.2|Colq|ENSMUSG00000057606.8|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm10_v2_chr16_-_22657165_22657178	0.660659	UAAGACG	ENSMUST00000089925.3|Dgkg|ENSMUSG00000022861.10|diacylglycerol kinase, gamma
mm10_v2_chr12_+_32378692_32378789	0.585663	UAAGACG	ENSMUST00000172332.2|Ccdc71l|ENSMUSG00000090946.2|coiled-coil domain containing 71 like
mm10_v2_chr2_+_160645881_160645896	0.55282	UAAGACG	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr4_+_17853451_17853474	0.540929	UAAGACG	ENSMUST00000029881.3|Mmp16|ENSMUSG00000028226.9|matrix metallopeptidase 16
mm10_v2_chr7_-_116038734_116038750	0.520536	UAAGACG	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr17_-_6655939_6655939	0.50919	UAAGACG	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr6_-_39206782_39206831	0.503759	UAAGACG	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr1_-_69685937_69685966	0.473439	UAAGACG	ENSMUST00000027146.2|Ikzf2|ENSMUSG00000025997.7|IKAROS family zinc finger 2
mm10_v2_chr3_+_137864573_137864613	0.45868	UAAGACG	ENSMUST00000174561.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z 	ENSMUST00000173790.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chr1_-_97661950_97662074	0.444493	UAAGACG	ENSMUST00000053033.7|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed 	ENSMUST00000149927.1|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed
mm10_v2_chr17_-_6317474_6317517	0.443664	UAAGACG	ENSMUST00000169415.1|Dynlt1a|ENSMUSG00000092074.1|dynein light chain Tctex-type 1A
mm10_v2_chr6_+_71707561_71707561	0.420512	UAAGACG	ENSMUST00000121469.1|Reep1|ENSMUSG00000052852.7|receptor accessory protein 1
mm10_v2_chr3_+_109340627_109340653	0.40346	UAAGACG	ENSMUST00000046864.7|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr17_-_51832666_51832678	0.392668	UAAGACG	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr5_+_67607873_67607889	0.390371	UAAGACG	ENSMUST00000087241.5|Shisa3|ENSMUSG00000050010.7|shisa homolog 3 (Xenopus laevis)
mm10_v2_chr11_+_97415527_97415538	0.366333	UAAGACG	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr14_+_69029289_69029414	0.35012	UAAGACG	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr11_+_44518959_44519000	0.349699	UAAGACG	ENSMUST00000019333.3|Rnf145|ENSMUSG00000019189.7|ring finger protein 145
mm10_v2_chr2_-_45113255_45113279	0.336888	UAAGACG	ENSMUST00000068415.4|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000127520.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr8_-_8690493_8690538	0.334503	UAAGACG	ENSMUST00000048545.8|Arglu1|ENSMUSG00000040459.10|arginine and glutamate rich 1
mm10_v2_chr3_-_116424007_116424032	0.328253	UAAGACG	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr17_+_6601671_6601671	0.32581	UAAGACG	ENSMUST00000092966.4|Dynlt1c|ENSMUSG00000000579.8|dynein light chain Tctex-type 1C
mm10_v2_chr5_+_123343834_123343970	0.322721	UAAGACG	ENSMUST00000120593.1|Bcl7a|ENSMUSG00000029438.3|B cell CLL/lymphoma 7A
mm10_v2_chr4_+_141147911_141147971	0.321884	UAAGACG	ENSMUST00000030757.9|Fbxo42|ENSMUSG00000028920.9|F-box protein 42
mm10_v2_chr11_+_68691906_68691915	0.290882	UAAGACG	ENSMUST00000102611.3|Myh10|ENSMUSG00000020900.9|myosin, heavy polypeptide 10, non-muscle
mm10_v2_chr4_-_41314877_41314889	0.285748	UAAGACG	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr18_+_53176345_53176376	0.283961	UAAGACG	ENSMUST00000037850.5|Snx2|ENSMUSG00000034484.7|sorting nexin 2
mm10_v2_chr2_-_6884975_6884996	0.283398	UAAGACG	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr3_+_136670076_136670186	0.281559	UAAGACG	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr16_+_17233560_17233664	0.279761	UAAGACG	ENSMUST00000090190.5|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2 	ENSMUST00000115698.2|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2
mm10_v2_chr12_-_69681795_69681869	0.258131	UAAGACG	ENSMUST00000183277.1|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila) 	ENSMUST00000035773.7|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila)
mm10_v2_chr1_+_74506044_74506105	0.238081	UAAGACG	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr17_+_29549783_29549798	0.221294	UAAGACG	ENSMUST00000048677.7|Tbc1d22b|ENSMUSG00000042203.7|TBC1 domain family, member 22B
mm10_v2_chr2_+_122028544_122028563	0.216639	UAAGACG	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr1_-_21961581_21961581	0.211667	UAAGACG	ENSMUST00000029667.6|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173058.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173404.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5
mm10_v2_chr10_-_23349887_23349919	0.207793	UAAGACG	ENSMUST00000074366.6|Eya4|ENSMUSG00000010461.8|eyes absent 4 homolog (Drosophila) 	ENSMUST00000092665.4|Eya4|ENSMUSG00000010461.8|eyes absent 4 homolog (Drosophila)
mm10_v2_chr16_-_15594507_15594531	0.195134	UAAGACG	ENSMUST00000115776.1|Ube2v2|ENSMUSG00000022674.8|ubiquitin-conjugating enzyme E2 variant 2 	ENSMUST00000115777.3|Ube2v2|ENSMUSG00000022674.8|ubiquitin-conjugating enzyme E2 variant 2
mm10_v2_chr17_+_29093763_29093781	0.188849	UAAGACG	ENSMUST00000023829.6|Cdkn1a|ENSMUSG00000023067.7|cyclin-dependent kinase inhibitor 1A (P21)
mm10_v2_chr6_-_54566484_54566491	0.184625	UAAGACG	ENSMUST00000019268.4|Scrn1|ENSMUSG00000019124.4|secernin 1
mm10_v2_chr12_+_113014502_113014513	0.179168	UAAGACG	ENSMUST00000084891.4|Pacs2|ENSMUSG00000021143.9|phosphofurin acidic cluster sorting protein 2
mm10_v2_chr1_-_119837613_119837673	0.174614	UAAGACG	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr19_+_21778325_21778363	0.174537	UAAGACG	ENSMUST00000096194.2|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2 	ENSMUST00000025663.6|Tmem2|ENSMUSG00000024754.6|transmembrane protein 2
mm10_v2_chr4_-_56865135_56865208	0.170112	UAAGACG	ENSMUST00000107612.2|Ctnnal1|ENSMUSG00000038816.8|catenin (cadherin associated protein), alpha-like 1 	ENSMUST00000045142.8|Ctnnal1|ENSMUSG00000038816.8|catenin (cadherin associated protein), alpha-like 1
mm10_v2_chr4_-_139131058_139131113	0.153218	UAAGACG	ENSMUST00000143971.1|Minos1|ENSMUSG00000050608.5|mitochondrial inner membrane organizing system 1
mm10_v2_chr12_-_46818749_46818788	0.148014	UAAGACG	ENSMUST00000021438.6|Nova1|ENSMUSG00000021047.6|neuro-oncological ventral antigen 1
mm10_v2_chr19_-_14597983_14598016	0.133548	UAAGACG	ENSMUST00000052011.7|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr3_-_119783262_119783388	0.132979	UAAGACG	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr14_-_20546512_20546582	0.132272	UAAGACG	ENSMUST00000022355.4|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform 	ENSMUST00000161445.1|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform 	ENSMUST00000159027.1|Ppp3cb|ENSMUSG00000021816.4|protein phosphatase 3, catalytic subunit, beta isoform
mm10_v2_chr15_+_96287518_96287604	0.126202	UAAGACG	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr6_+_38433913_38433965	0.125471	UAAGACG	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr14_-_105176860_105176918	0.124222	UAAGACG	ENSMUST00000163545.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr6_-_100287441_100287465	0.11818	UAAGACG	ENSMUST00000101118.2|Rybp|ENSMUSG00000072872.2|RING1 and YY1 binding protein
mm10_v2_chr17_+_83350925_83350998	0.117924	UAAGACG	ENSMUST00000096766.4|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000112363.2|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000049503.8|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4
mm10_v2_chr12_-_91590009_91590056	0.095989	UAAGACG	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr3_+_89520152_89520175	0.0831985	UAAGACG	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr1_-_64121456_64121491	0.0823478	UAAGACG	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr8_+_117257019_117257107	0.0776939	UAAGACG	ENSMUST00000166750.1|Cmip|ENSMUSG00000034390.9|c-Maf inducing protein
mm10_v2_chr6_-_51469869_51469894	0.0698844	UAAGACG	ENSMUST00000114459.1|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1 	ENSMUST00000069949.6|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1
mm10_v2_chr2_+_74691090_74691090	0.0655208	UAAGACG	ENSMUST00000061745.3|Hoxd10|ENSMUSG00000050368.3|homeobox D10
mm10_v2_chr11_-_19018956_19018973	0.0620958	UAAGACG	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr9_-_72111827_72111895	0.058376	UAAGACG	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr5_+_57718021_57718104	0.0511482	UAAGACG	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr13_-_111490111_111490139	0.0418233	UAAGACG	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr2_-_37647199_37647285	0.0402155	UAAGACG	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr10_+_39369750_39369804	0.0399918	UAAGACG	ENSMUST00000063091.6|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000099967.3|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene 	ENSMUST00000126486.1|Fyn|ENSMUSG00000019843.8|Fyn proto-oncogene
mm10_v2_chr15_-_93275151_93275178	0.0336073	UAAGACG	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr10_-_115315546_115315615	0.0317945	UAAGACG	ENSMUST00000020343.7|Rab21|ENSMUSG00000020132.9|RAB21, member RAS oncogene family
mm10_v2_chr14_-_61439831_61439947	0.0262007	UAAGACG	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr13_+_94875600_94875611	0.0233798	UAAGACG	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr7_-_111082997_111083037	0.0143789	UAAGACG	ENSMUST00000161051.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000160132.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000106666.3|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000162415.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2
mm10_v2_chr7_-_66689589_66689603	0.0142922	UAAGACG	ENSMUST00000124899.1|Asb7|ENSMUSG00000030509.10|ankyrin repeat and SOCS box-containing 7
mm10_v2_chr4_-_126429501_126429556	0.0142543	UAAGACG	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr18_+_34220978_34221020	0.0118204	UAAGACG	ENSMUST00000079362.5|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli 	ENSMUST00000115781.3|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli
mm10_v2_chr3_-_122984404_122984512	0.0106849	UAAGACG	ENSMUST00000090379.2|Usp53|ENSMUSG00000039701.7|ubiquitin specific peptidase 53
mm10_v2_chr6_-_145865483_145865558	0.00981692	UAAGACG	ENSMUST00000032386.4|Bhlhe41|ENSMUSG00000030256.5|basic helix-loop-helix family, member e41
mm10_v2_chr9_+_72532214_72532271	0.00727464	UAAGACG	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr12_-_73047179_73047179	0.00424387	UAAGACG	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr6_+_77242644_77242697	0.00358258	UAAGACG	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr7_+_130577334_130577484	0.00279318	UAAGACG	ENSMUST00000059145.7|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2 	ENSMUST00000084513.4|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
