mm10_v2_chr2_+_84734050_84734107	2.60368	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr10_+_75573448_75573464	2.51948	Pax1_Pax9	ENSMUST00000006508.3|Ggt1|ENSMUSG00000006345.4|gamma-glutamyltransferase 1
mm10_v2_chr9_-_22389113_22389206	1.56807	Pax1_Pax9	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr5_+_112255813_112255874	1.54375	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
mm10_v2_chr9_+_96196246_96196280	1.15422	Pax1_Pax9	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr6_-_145048809_145048821	1.14306	Pax1_Pax9	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr13_-_62607499_62607499	0.951307	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr4_+_115000174_115000189	0.950244	Pax1_Pax9	ENSMUST00000129957.1|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr4_+_115000156_115000170	0.903214	Pax1_Pax9	ENSMUST00000030490.6|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr5_-_129787175_129787259	0.830076	Pax1_Pax9	ENSMUST00000031399.6|Psph|ENSMUSG00000029446.8|phosphoserine phosphatase
mm10_v2_chr1_-_37719782_37719899	0.810258	Pax1_Pax9	ENSMUST00000160589.1|2010300C02Rik|ENSMUSG00000026090.10|RIKEN cDNA 2010300C02 gene
mm10_v2_chr5_+_93206518_93206518	0.721414	Pax1_Pax9	ENSMUST00000031330.4|2010109A12Rik|ENSMUSG00000029384.4|RIKEN cDNA 2010109A12 gene
mm10_v2_chr9_-_97111117_97111159	0.646338	Pax1_Pax9	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr16_+_87553313_87553342	0.639103	Pax1_Pax9	ENSMUST00000026700.7|Map3k7cl|ENSMUSG00000025610.7|Map3k7 C-terminal like
mm10_v2_chr7_-_24299310_24299368	0.510922	Pax1_Pax9	ENSMUST00000145131.1|Zfp61|ENSMUSG00000050605.11|zinc finger protein 61
mm10_v2_chr13_-_62520451_62520544	0.412938	Pax1_Pax9	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chr9_+_21337828_21337859	0.405109	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr17_-_24205514_24205562	0.28736	Pax1_Pax9	ENSMUST00000097376.3|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000168410.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000167791.2|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24 	ENSMUST00000040474.7|Tbc1d24|ENSMUSG00000036473.9|TBC1 domain family, member 24
mm10_v2_chr7_+_118633729_118633749	0.283897	Pax1_Pax9	ENSMUST00000057320.7|Tmc5|ENSMUSG00000030650.11|transmembrane channel-like gene family 5
mm10_v2_chr4_+_11558914_11558979	0.28294	Pax1_Pax9	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chr13_-_62777089_62777089	0.262065	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr4_-_117375453_117375467	0.187402	Pax1_Pax9	ENSMUST00000094853.2|Rnf220|ENSMUSG00000028677.12|ring finger protein 220
mm10_v2_chrX_+_74313014_74313109	0.148336	Pax1_Pax9	ENSMUST00000114160.1|Fam50a|ENSMUSG00000001962.8|family with sequence similarity 50, member A
mm10_v2_chr12_+_33957645_33957671	0.0940448	Pax1_Pax9	ENSMUST00000049089.5|Twist1|ENSMUSG00000035799.5|twist basic helix-loop-helix transcription factor 1
mm10_v2_chr8_+_31150307_31150346	0.092168	Pax1_Pax9	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr4_-_143299463_143299482	0.0422518	Pax1_Pax9	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr17_-_27909206_27909264	0.0312635	Pax1_Pax9	ENSMUST00000114848.1|Taf11|ENSMUSG00000024218.6|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr5_+_129787390_129787439	0.0134795	Pax1_Pax9	ENSMUST00000031402.8|Cct6a|ENSMUSG00000029447.8|chaperonin containing Tcp1, subunit 6a (zeta)
mm10_v2_chrX_+_86191764_86191782	0.00769014	Pax1_Pax9	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
