mm10_v2_chr19_-_7966000_7966037	5.1335	Nkx1-1_Nkx1-2	ENSMUST00000182102.1|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27 	ENSMUST00000075619.4|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27
mm10_v2_chr1_-_150466165_150466236	2.17223	Nkx1-1_Nkx1-2	ENSMUST00000162367.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000161611.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000161320.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000159035.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm10_v2_chr10_+_127898515_127898532	0.927065	Nkx1-1_Nkx1-2	ENSMUST00000047134.7|Sdr9c7|ENSMUSG00000040127.7|4short chain dehydrogenase/reductase family 9C, member 7
mm10_v2_chr14_-_70429072_70429096	0.895211	Nkx1-1_Nkx1-2	ENSMUST00000048129.4|Piwil2|ENSMUSG00000033644.4|piwi-like RNA-mediated gene silencing 2
mm10_v2_chr5_+_90561102_90561209	0.847581	Nkx1-1_Nkx1-2	ENSMUST00000094615.4|5830473C10Rik|ENSMUSG00000070690.4|RIKEN cDNA 5830473C10 gene
mm10_v2_chr5_+_9100681_9100778	0.726169	Nkx1-1_Nkx1-2	ENSMUST00000115365.1|Tmem243|ENSMUSG00000079659.1|transmembrane protein 243, mitochondrial
mm10_v2_chr11_+_43682038_43682060	0.616643	Nkx1-1_Nkx1-2	ENSMUST00000094294.4|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr7_-_73537621_73537766	0.552137	Nkx1-1_Nkx1-2	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr11_-_99244058_99244136	0.525216	Nkx1-1_Nkx1-2	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr13_+_94083490_94083511	0.522116	Nkx1-1_Nkx1-2	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr6_+_37870786_37870882	0.517308	Nkx1-1_Nkx1-2	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr4_+_102570065_102570124	0.515762	Nkx1-1_Nkx1-2	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr6_-_57535422_57535447	0.493756	Nkx1-1_Nkx1-2	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr10_-_41587753_41587753	0.481644	Nkx1-1_Nkx1-2	ENSMUST00000160751.1|Ccdc162|ENSMUSG00000075225.5|coiled-coil domain containing 162
mm10_v2_chr13_-_102905740_102905814	0.476305	Nkx1-1_Nkx1-2	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr3_+_94372794_94372872	0.470912	Nkx1-1_Nkx1-2	ENSMUST00000029795.3|Rorc|ENSMUSG00000028150.8|RAR-related orphan receptor gamma
mm10_v2_chr18_+_4993795_4993819	0.468244	Nkx1-1_Nkx1-2	ENSMUST00000153016.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr11_+_43681998_43682036	0.463404	Nkx1-1_Nkx1-2	ENSMUST00000061070.5|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr8_-_86580664_86580686	0.447309	Nkx1-1_Nkx1-2	ENSMUST00000131423.1|Abcc12|ENSMUSG00000036872.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 12 	ENSMUST00000152438.1|Abcc12|ENSMUSG00000036872.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 12
mm10_v2_chr15_+_9436028_9436083	0.437935	Nkx1-1_Nkx1-2	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr1_-_91459254_91459336	0.434738	Nkx1-1_Nkx1-2	ENSMUST00000069620.8|Per2|ENSMUSG00000055866.8|period circadian clock 2
mm10_v2_chrX_-_60893430_60893440	0.396624	Nkx1-1_Nkx1-2	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr12_-_112802646_112802665	0.374111	Nkx1-1_Nkx1-2	ENSMUST00000124526.1|Ahnak2|ENSMUSG00000072812.4|AHNAK nucleoprotein 2
mm10_v2_chr19_+_11965817_11965887	0.372579	Nkx1-1_Nkx1-2	ENSMUST00000025590.9|Osbp|ENSMUSG00000024687.10|oxysterol binding protein
mm10_v2_chr2_-_102400257_102400396	0.361198	Nkx1-1_Nkx1-2	ENSMUST00000152929.1|Trim44|ENSMUSG00000027189.10|tripartite motif-containing 44
mm10_v2_chr10_+_116301374_116301428	0.349697	Nkx1-1_Nkx1-2	ENSMUST00000092167.5|Ptprb|ENSMUSG00000020154.9|protein tyrosine phosphatase, receptor type, B
mm10_v2_chr16_+_23146536_23146646	0.335403	Nkx1-1_Nkx1-2	ENSMUST00000023593.5|Adipoq|ENSMUSG00000022878.5|adiponectin, C1Q and collagen domain containing 	ENSMUST00000171309.1|Adipoq|ENSMUSG00000022878.5|adiponectin, C1Q and collagen domain containing
mm10_v2_chr8_+_113635787_113635842	0.331575	Nkx1-1_Nkx1-2	ENSMUST00000035777.8|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr11_-_20332654_20332688	0.329045	Nkx1-1_Nkx1-2	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr11_-_21371143_21371221	0.324022	Nkx1-1_Nkx1-2	ENSMUST00000060895.5|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr11_-_20332689_20332774	0.323253	Nkx1-1_Nkx1-2	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr2_-_165388245_165388315	0.321282	Nkx1-1_Nkx1-2	ENSMUST00000103084.3|Zfp334|ENSMUSG00000017667.9|zinc finger protein 334
mm10_v2_chr8_+_113635550_113635597	0.318812	Nkx1-1_Nkx1-2	ENSMUST00000179926.1|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr14_-_59365410_59365461	0.31802	Nkx1-1_Nkx1-2	ENSMUST00000161031.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D 	ENSMUST00000160425.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr2_-_69712461_69712606	0.301908	Nkx1-1_Nkx1-2	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr14_-_59365465_59365487	0.276475	Nkx1-1_Nkx1-2	ENSMUST00000095157.4|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr17_-_34000257_34000333	0.271269	Nkx1-1_Nkx1-2	ENSMUST00000087189.6|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000173075.1|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000172760.1|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000172912.1|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000025181.10|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region
mm10_v2_chr4_-_141599835_141600032	0.267276	Nkx1-1_Nkx1-2	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr11_-_99851608_99851632	0.254646	Nkx1-1_Nkx1-2	ENSMUST00000107437.1|Krtap4-16|ENSMUSG00000046474.9|keratin associated protein 4-16
mm10_v2_chr6_+_68161415_68161415	0.246568	Nkx1-1_Nkx1-2	ENSMUST00000168090.1|Igkv1-115|ENSMUSG00000091800.1|immunoglobulin kappa variable 1-115
mm10_v2_chr7_+_51880312_51880356	0.242256	Nkx1-1_Nkx1-2	ENSMUST00000145049.1|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr13_-_102906046_102906111	0.235374	Nkx1-1_Nkx1-2	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr7_+_27195781_27195885	0.230414	Nkx1-1_Nkx1-2	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr2_-_37703845_37703885	0.220005	Nkx1-1_Nkx1-2	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chrX_+_20364481_20364616	0.219704	Nkx1-1_Nkx1-2	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr8_-_3694167_3694183	0.216719	Nkx1-1_Nkx1-2	ENSMUST00000005678.4|Fcer2a|ENSMUSG00000005540.9|Fc receptor, IgE, low affinity II, alpha polypeptide
mm10_v2_chr11_-_100762928_100762936	0.198868	Nkx1-1_Nkx1-2	ENSMUST00000107360.2|Hcrt|ENSMUSG00000045471.4|hypocretin 	ENSMUST00000055083.3|Hcrt|ENSMUSG00000045471.4|hypocretin
mm10_v2_chr3_+_121953213_121953295	0.196557	Nkx1-1_Nkx1-2	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr8_-_34965631_34965714	0.190659	Nkx1-1_Nkx1-2	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr6_-_129775849_129775849	0.183967	Nkx1-1_Nkx1-2	ENSMUST00000095409.2|Gm156|ENSMUSG00000071158.3|predicted gene 156
mm10_v2_chr4_+_99030946_99030961	0.180932	Nkx1-1_Nkx1-2	ENSMUST00000030280.6|Angptl3|ENSMUSG00000028553.6|angiopoietin-like 3
mm10_v2_chrX_+_57212110_57212143	0.180623	Nkx1-1_Nkx1-2	ENSMUST00000033466.1|Cd40lg|ENSMUSG00000031132.1|CD40 ligand
mm10_v2_chr13_-_105054895_105054930	0.179228	Nkx1-1_Nkx1-2	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr2_-_45112890_45113010	0.178096	Nkx1-1_Nkx1-2	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr14_-_8666236_8666279	0.169935	Nkx1-1_Nkx1-2	ENSMUST00000102996.3|4930452B06Rik|ENSMUSG00000021747.11|RIKEN cDNA 4930452B06 gene
mm10_v2_chr6_-_3399545_3399574	0.156423	Nkx1-1_Nkx1-2	ENSMUST00000120087.3|Samd9l|ENSMUSG00000047735.12|sterile alpha motif domain containing 9-like
mm10_v2_chrX_+_160768013_160768122	0.14772	Nkx1-1_Nkx1-2	ENSMUST00000033650.7|Rs1|ENSMUSG00000031293.7|retinoschisis (X-linked, juvenile) 1 (human)
mm10_v2_chr3_+_55782500_55782521	0.146937	Nkx1-1_Nkx1-2	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr9_-_54661870_54661912	0.141294	Nkx1-1_Nkx1-2	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr18_+_12741324_12741355	0.138561	Nkx1-1_Nkx1-2	ENSMUST00000115857.2|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000121018.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000119108.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm10_v2_chr16_+_52031549_52031570	0.138557	Nkx1-1_Nkx1-2	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr4_+_43493345_43493430	0.13416	Nkx1-1_Nkx1-2	ENSMUST00000030181.5|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107 	ENSMUST00000107922.2|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107
mm10_v2_chr7_+_29983948_29983964	0.131424	Nkx1-1_Nkx1-2	ENSMUST00000148442.1|Zfp568|ENSMUSG00000074221.5|zinc finger protein 568
mm10_v2_chr5_+_103425181_103425197	0.126279	Nkx1-1_Nkx1-2	ENSMUST00000048957.9|Ptpn13|ENSMUSG00000034573.10|protein tyrosine phosphatase, non-receptor type 13
mm10_v2_chr7_-_143460989_143461050	0.122332	Nkx1-1_Nkx1-2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chrX_-_74085656_74085690	0.115832	Nkx1-1_Nkx1-2	ENSMUST00000033770.6|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2
mm10_v2_chr17_+_34931253_34931343	0.111174	Nkx1-1_Nkx1-2	ENSMUST00000007253.5|Neu1|ENSMUSG00000007038.5|neuraminidase 1
mm10_v2_chr16_+_44765732_44765751	0.108727	Nkx1-1_Nkx1-2	ENSMUST00000057488.8|Cd200r1|ENSMUSG00000022667.11|CD200 receptor 1
mm10_v2_chr6_+_78380700_78380715	0.10748	Nkx1-1_Nkx1-2	ENSMUST00000101272.1|Reg3a|ENSMUSG00000079516.1|regenerating islet-derived 3 alpha
mm10_v2_chr17_-_57031468_57031538	0.106124	Nkx1-1_Nkx1-2	ENSMUST00000007814.8|Khsrp|ENSMUSG00000007670.9|KH-type splicing regulatory protein
mm10_v2_chr6_+_145615757_145615772	0.104418	Nkx1-1_Nkx1-2	ENSMUST00000087445.6|Tuba3b|ENSMUSG00000067338.6|tubulin, alpha 3B
mm10_v2_chrX_+_160768179_160768183	0.10401	Nkx1-1_Nkx1-2	ENSMUST00000112368.2|Rs1|ENSMUSG00000031293.7|retinoschisis (X-linked, juvenile) 1 (human)
mm10_v2_chrX_+_107255878_107256064	0.0993409	Nkx1-1_Nkx1-2	ENSMUST00000101294.2|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000118820.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000120971.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174
mm10_v2_chr10_+_94575257_94575295	0.0973257	Nkx1-1_Nkx1-2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr14_-_50681645_50681645	0.0939988	Nkx1-1_Nkx1-2	ENSMUST00000078075.4|Olfr747|ENSMUSG00000057179.4|olfactory receptor 747
mm10_v2_chr7_-_19629355_19629451	0.0937843	Nkx1-1_Nkx1-2	ENSMUST00000049912.8|Relb|ENSMUSG00000002983.10|avian reticuloendotheliosis viral (v-rel) oncogene related B 	ENSMUST00000094762.3|Relb|ENSMUSG00000002983.10|avian reticuloendotheliosis viral (v-rel) oncogene related B 	ENSMUST00000098754.4|Relb|ENSMUSG00000002983.10|avian reticuloendotheliosis viral (v-rel) oncogene related B
mm10_v2_chr16_-_16359016_16359040	0.0932425	Nkx1-1_Nkx1-2	ENSMUST00000023477.7|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000096229.3|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like 	ENSMUST00000115749.1|Dnm1l|ENSMUSG00000022789.8|dynamin 1-like
mm10_v2_chr10_+_81137953_81137992	0.0876586	Nkx1-1_Nkx1-2	ENSMUST00000117956.1|Zbtb7a|ENSMUSG00000035011.9|zinc finger and BTB domain containing 7a
mm10_v2_chr9_-_107872403_107872422	0.0830312	Nkx1-1_Nkx1-2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr15_+_41830921_41831001	0.0805379	Nkx1-1_Nkx1-2	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr5_-_34660068_34660148	0.0803496	Nkx1-1_Nkx1-2	ENSMUST00000041364.9|Nop14|ENSMUSG00000036693.9|NOP14 nucleolar protein
mm10_v2_chr9_-_97369958_97370021	0.0790421	Nkx1-1_Nkx1-2	ENSMUST00000035026.4|Trim42|ENSMUSG00000032451.6|tripartite motif-containing 42
mm10_v2_chr11_+_99873389_99873389	0.0780798	Nkx1-1_Nkx1-2	ENSMUST00000093936.3|Krtap9-1|ENSMUSG00000070335.3|keratin associated protein 9-1
mm10_v2_chr8_+_40354303_40354303	0.0752018	Nkx1-1_Nkx1-2	ENSMUST00000136835.1|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr15_+_22549022_22549082	0.0731277	Nkx1-1_Nkx1-2	ENSMUST00000163361.1|Cdh18|ENSMUSG00000040420.8|cadherin 18
mm10_v2_chr7_-_30552255_30552316	0.0724548	Nkx1-1_Nkx1-2	ENSMUST00000108165.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749 	ENSMUST00000153594.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749
mm10_v2_chr9_-_54661666_54661716	0.0701782	Nkx1-1_Nkx1-2	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chrX_-_74085586_74085652	0.0651867	Nkx1-1_Nkx1-2	ENSMUST00000123362.1|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2 	ENSMUST00000140399.1|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2 	ENSMUST00000100750.3|Mecp2|ENSMUSG00000031393.10|methyl CpG binding protein 2
mm10_v2_chr6_+_145934113_145934136	0.0644935	Nkx1-1_Nkx1-2	ENSMUST00000032383.7|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr8_+_83972951_83973028	0.0554933	Nkx1-1_Nkx1-2	ENSMUST00000005606.6|Prkaca|ENSMUSG00000005469.9|protein kinase, cAMP dependent, catalytic, alpha
mm10_v2_chr11_+_21572221_21572235	0.0480319	Nkx1-1_Nkx1-2	ENSMUST00000020568.3|Wdpcp|ENSMUSG00000020319.3|WD repeat containing planar cell polarity effector 	ENSMUST00000131135.1|Wdpcp|ENSMUSG00000020319.3|WD repeat containing planar cell polarity effector
mm10_v2_chr14_+_8666369_8666413	0.0435972	Nkx1-1_Nkx1-2	ENSMUST00000181914.1|4930455B14Rik|ENSMUSG00000097898.1|RIKEN cDNA 4930455B14 gene 	ENSMUST00000180444.1|4930455B14Rik|ENSMUSG00000097898.1|RIKEN cDNA 4930455B14 gene
mm10_v2_chr2_+_91265252_91265315	0.041788	Nkx1-1_Nkx1-2	ENSMUST00000028691.6|Arfgap2|ENSMUSG00000027255.8|ADP-ribosylation factor GTPase activating protein 2
mm10_v2_chr7_+_24271568_24271568	0.0357741	Nkx1-1_Nkx1-2	ENSMUST00000032696.6|Zfp93|ENSMUSG00000055305.9|zinc finger protein 93
mm10_v2_chr10_+_116966274_116966295	0.0346445	Nkx1-1_Nkx1-2	ENSMUST00000033651.3|D630029K05Rik|ENSMUSG00000031294.3|RIKEN cDNA D630029K05 gene
mm10_v2_chr1_+_174501796_174501843	0.0329072	Nkx1-1_Nkx1-2	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr4_-_132463873_132463929	0.0310829	Nkx1-1_Nkx1-2	ENSMUST00000102567.3|Med18|ENSMUSG00000066042.4|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
mm10_v2_chr3_-_116423930_116423993	0.0291628	Nkx1-1_Nkx1-2	ENSMUST00000106491.2|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr6_-_52260780_52260803	0.0285384	Nkx1-1_Nkx1-2	ENSMUST00000114416.1|Hoxa13|ENSMUSG00000038203.12|homeobox A13 	ENSMUST00000147595.3|Hoxa13|ENSMUSG00000038203.12|homeobox A13
mm10_v2_chr8_-_104534630_104534646	0.0277603	Nkx1-1_Nkx1-2	ENSMUST00000162466.1|Nae1|ENSMUSG00000031878.11|NEDD8 activating enzyme E1 subunit 1 	ENSMUST00000034349.9|Nae1|ENSMUSG00000031878.11|NEDD8 activating enzyme E1 subunit 1
mm10_v2_chr17_-_63863791_63863791	0.0267334	Nkx1-1_Nkx1-2	ENSMUST00000050753.3|A930002H24Rik|ENSMUSG00000045506.3|RIKEN cDNA A930002H24 gene
mm10_v2_chr10_+_88147061_88147076	0.026581	Nkx1-1_Nkx1-2	ENSMUST00000169309.1|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr7_-_24724237_24724237	0.026154	Nkx1-1_Nkx1-2	ENSMUST00000081657.4|Gm4763|ENSMUSG00000058717.7|predicted gene 4763
mm10_v2_chr19_+_29367447_29367468	0.024972	Nkx1-1_Nkx1-2	ENSMUST00000016640.7|Cd274|ENSMUSG00000016496.7|CD274 antigen
mm10_v2_chr3_-_116424007_116424032	0.0230201	Nkx1-1_Nkx1-2	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr7_+_3645267_3645352	0.0224767	Nkx1-1_Nkx1-2	ENSMUST00000038913.9|Cnot3|ENSMUSG00000035632.10|CCR4-NOT transcription complex, subunit 3
mm10_v2_chr7_+_128744870_128745020	0.022375	Nkx1-1_Nkx1-2	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr7_-_100964371_100964395	0.0211738	Nkx1-1_Nkx1-2	ENSMUST00000060174.4|P2ry6|ENSMUSG00000048779.4|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm10_v2_chr5_+_104202609_104202624	0.0167285	Nkx1-1_Nkx1-2	ENSMUST00000066708.5|Dmp1|ENSMUSG00000029307.6|dentin matrix protein 1
mm10_v2_chr9_-_55919605_55919605	0.0130442	Nkx1-1_Nkx1-2	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr17_+_7170101_7170132	0.0125795	Nkx1-1_Nkx1-2	ENSMUST00000024575.6|Rps6ka2|ENSMUSG00000023809.9|ribosomal protein S6 kinase, polypeptide 2
mm10_v2_chr5_+_138187485_138187521	0.012483	Nkx1-1_Nkx1-2	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr2_-_132247747_132247807	0.00727188	Nkx1-1_Nkx1-2	ENSMUST00000110163.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000180286.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000028816.2|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230
mm10_v2_chr7_+_104003259_104003259	0.00494058	Nkx1-1_Nkx1-2	ENSMUST00000098184.1|Olfr638|ENSMUSG00000094063.1|olfactory receptor 638
mm10_v2_chr10_+_88146992_88147037	0.0048662	Nkx1-1_Nkx1-2	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr5_-_74531619_74531754	0.00239704	Nkx1-1_Nkx1-2	ENSMUST00000113542.2|Scfd2|ENSMUSG00000062110.8|Sec1 family domain containing 2 	ENSMUST00000072857.6|Scfd2|ENSMUSG00000062110.8|Sec1 family domain containing 2 	ENSMUST00000121330.1|Scfd2|ENSMUSG00000062110.8|Sec1 family domain containing 2 	ENSMUST00000151474.1|Scfd2|ENSMUSG00000062110.8|Sec1 family domain containing 2
mm10_v2_chr12_-_4769217_4769267	0.00225065	Nkx1-1_Nkx1-2	ENSMUST00000053458.5|Fam228b|ENSMUSG00000050545.8|family with sequence similarity 228, member B
