mm10_v2_chr6_+_41458923_41458936	10.5183	Nanog	ENSMUST00000031910.7|Prss1|ENSMUSG00000062751.5|protease, serine, 1 (trypsin 1)
mm10_v2_chr19_-_11640828_11640840	10.4941	Nanog	ENSMUST00000112984.2|Ms4a3|ENSMUSG00000024681.5|membrane-spanning 4-domains, subfamily A, member 3
mm10_v2_chr6_+_41392356_41392380	8.61927	Nanog	ENSMUST00000049079.7|Gm5771|ENSMUSG00000058119.5|predicted gene 5771
mm10_v2_chr7_-_142679533_142679726	7.4758	Nanog	ENSMUST00000162317.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000125933.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105931.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105930.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105933.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000105932.1|Ins2|ENSMUSG00000000215.4|insulin II 	ENSMUST00000000220.2|Ins2|ENSMUSG00000000215.4|insulin II
mm10_v2_chr2_+_128591205_128591223	7.06531	Nanog	ENSMUST00000155430.1|Gm355|ENSMUSG00000074812.4|predicted gene 355
mm10_v2_chr17_+_29135056_29135056	7.05552	Nanog	ENSMUST00000087942.4|Rab44|ENSMUSG00000064147.6|RAB44, member RAS oncogene family
mm10_v2_chr9_+_65890237_65890343	6.42492	Nanog	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr6_+_41354105_41354185	6.05805	Nanog	ENSMUST00000072103.5|Try10|ENSMUSG00000071521.3|trypsin 10
mm10_v2_chr17_+_40811089_40811133	5.57419	Nanog	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr1_-_75133866_75133890	5.53854	Nanog	ENSMUST00000027405.4|Slc23a3|ENSMUSG00000026205.7|solute carrier family 23 (nucleobase transporters), member 3
mm10_v2_chr14_+_27000362_27000507	5.24111	Nanog	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr12_+_109549157_109549301	5.20754	Nanog	ENSMUST00000128458.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000150851.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr9_-_123678782_123678850	4.93619	Nanog	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chrX_+_8271133_8271179	4.89017	Nanog	ENSMUST00000127103.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5 	ENSMUST00000115591.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr2_+_164948219_164948245	4.86508	Nanog	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chrX_+_8271381_8271453	4.7472	Nanog	ENSMUST00000033512.4|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr7_-_6730412_6730431	4.72481	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr18_+_36528145_36528157	4.67753	Nanog	ENSMUST00000074298.6|Slc4a9|ENSMUSG00000024485.9|solute carrier family 4, sodium bicarbonate cotransporter, member 9 	ENSMUST00000115694.2|Slc4a9|ENSMUSG00000024485.9|solute carrier family 4, sodium bicarbonate cotransporter, member 9
mm10_v2_chr3_+_105870858_105870895	4.40604	Nanog	ENSMUST00000164730.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr6_+_41302265_41302279	4.17315	Nanog	ENSMUST00000031913.4|Try4|ENSMUSG00000054106.7|trypsin 4
mm10_v2_chr5_+_33658123_33658160	3.99661	Nanog	ENSMUST00000074849.6|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3 	ENSMUST00000079534.4|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chrX_+_8271642_8271790	3.82773	Nanog	ENSMUST00000115590.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr9_-_123678873_123678885	3.64447	Nanog	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr3_+_114030532_114030571	3.58153	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr10_+_58394361_58394380	3.54555	Nanog	ENSMUST00000020077.4|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr7_+_79660196_79660261	3.4793	Nanog	ENSMUST00000035977.7|Ticrr|ENSMUSG00000046591.9|TOPBP1-interacting checkpoint and replication regulator
mm10_v2_chr12_-_69790660_69790735	3.39143	Nanog	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr16_-_18622403_18622403	3.37746	Nanog	ENSMUST00000167388.1|Gp1bb|ENSMUSG00000050761.3|glycoprotein Ib, beta polypeptide
mm10_v2_chr15_+_80097866_80097873	3.36889	Nanog	ENSMUST00000143928.1|Syngr1|ENSMUSG00000022415.6|synaptogyrin 1
mm10_v2_chr5_+_33658567_33658616	3.36012	Nanog	ENSMUST00000114426.3|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr3_-_54915867_54915887	3.33271	Nanog	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr3_+_88081997_88082051	3.32388	Nanog	ENSMUST00000071812.5|Iqgap3|ENSMUSG00000028068.9|IQ motif containing GTPase activating protein 3
mm10_v2_chr5_+_33658550_33658563	3.32224	Nanog	ENSMUST00000152847.1|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr15_-_103251465_103251705	3.23291	Nanog	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr10_+_58394381_58394395	3.23272	Nanog	ENSMUST00000105468.1|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr3_+_105870898_105870912	3.08613	Nanog	ENSMUST00000010279.5|Adora3|ENSMUSG00000074344.2|adenosine A3 receptor
mm10_v2_chr7_-_14254870_14254890	2.96534	Nanog	ENSMUST00000184731.1|Sult2a6|ENSMUSG00000070810.4|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6 	ENSMUST00000076576.6|Sult2a6|ENSMUSG00000070810.4|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6
mm10_v2_chr19_-_9899450_9899533	2.93868	Nanog	ENSMUST00000025562.7|Incenp|ENSMUSG00000024660.8|inner centromere protein
mm10_v2_chr7_-_14123042_14123053	2.8241	Nanog	ENSMUST00000098809.2|Sult2a3|ENSMUSG00000074375.2|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3
mm10_v2_chr4_-_49597425_49597493	2.73284	Nanog	ENSMUST00000150664.1|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr9_-_20959785_20959888	2.7086	Nanog	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr3_+_68869563_68869589	2.69779	Nanog	ENSMUST00000054551.2|1110032F04Rik|ENSMUSG00000046999.2|RIKEN cDNA 1110032F04 gene
mm10_v2_chrX_+_134308084_134308209	2.66489	Nanog	ENSMUST00000081064.5|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000101251.1|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000129782.1|Cenpi|ENSMUSG00000031262.6|centromere protein I
mm10_v2_chr11_+_44617310_44617336	2.54881	Nanog	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr11_+_62248977_62249011	2.53564	Nanog	ENSMUST00000018644.2|Adora2b|ENSMUSG00000018500.2|adenosine A2b receptor
mm10_v2_chr6_+_124829582_124829688	2.4544	Nanog	ENSMUST00000024270.7|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr12_+_102128718_102128739	2.40193	Nanog	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr15_+_44457522_44457553	2.39752	Nanog	ENSMUST00000166957.1|Pkhd1l1|ENSMUSG00000038725.5|polycystic kidney and hepatic disease 1-like 1 	ENSMUST00000038336.5|Pkhd1l1|ENSMUSG00000038725.5|polycystic kidney and hepatic disease 1-like 1
mm10_v2_chr7_+_19411086_19411101	2.39155	Nanog	ENSMUST00000003643.1|Ckm|ENSMUSG00000030399.1|creatine kinase, muscle
mm10_v2_chr6_-_136781718_136781806	2.3718	Nanog	ENSMUST00000078095.6|Gucy2c|ENSMUSG00000042638.8|guanylate cyclase 2c 	ENSMUST00000032338.7|Gucy2c|ENSMUSG00000042638.8|guanylate cyclase 2c
mm10_v2_chr18_-_21652362_21652373	2.32382	Nanog	ENSMUST00000049105.4|Klhl14|ENSMUSG00000042514.5|kelch-like 14
mm10_v2_chr12_+_109747903_109748051	2.31242	Nanog	ENSMUST00000183084.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000182300.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene
mm10_v2_chr6_-_145047725_145047853	2.25114	Nanog	ENSMUST00000123930.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr6_-_67037399_67037417	2.24418	Nanog	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr2_-_116067391_116067444	2.23274	Nanog	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr7_-_100467149_100467190	2.20202	Nanog	ENSMUST00000184420.1|RP23-308M1.2|ENSMUSG00000099137.1|RP23-308M1.2
mm10_v2_chr15_-_66831625_66831668	2.19394	Nanog	ENSMUST00000164163.1|Sla|ENSMUSG00000022372.8|src-like adaptor
mm10_v2_chr7_-_133702515_133702616	2.18683	Nanog	ENSMUST00000153698.1|Uros|ENSMUSG00000030979.6|uroporphyrinogen III synthase
mm10_v2_chr3_+_122044428_122044469	2.16142	Nanog	ENSMUST00000013995.8|Abca4|ENSMUSG00000028125.8|ATP-binding cassette, sub-family A (ABC1), member 4
mm10_v2_chr6_+_124829540_124829577	2.12186	Nanog	ENSMUST00000150120.1|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chrX_-_164250368_164250382	2.11731	Nanog	ENSMUST00000112263.1|Bmx|ENSMUSG00000031377.5|BMX non-receptor tyrosine kinase
mm10_v2_chr11_-_116077606_116077750	2.11451	Nanog	ENSMUST00000106450.1|Unc13d|ENSMUSG00000057948.6|unc-13 homolog D (C. elegans)
mm10_v2_chr3_-_144760841_144760868	2.10066	Nanog	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr17_-_25727364_25727426	2.08377	Nanog	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr13_-_89742244_89742334	2.06667	Nanog	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr12_-_91384403_91384430	2.05665	Nanog	ENSMUST00000141429.1|Cep128|ENSMUSG00000061533.9|centrosomal protein 128
mm10_v2_chr3_+_37312514_37312575	2.03165	Nanog	ENSMUST00000057975.7|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human) 	ENSMUST00000108121.3|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human)
mm10_v2_chr4_+_154960915_154960930	2.01452	Nanog	ENSMUST00000049621.6|Hes5|ENSMUSG00000048001.7|hairy and enhancer of split 5 (Drosophila)
mm10_v2_chr15_-_51991679_51991760	2.00592	Nanog	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr3_-_116253467_116253484	1.98918	Nanog	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr18_+_82554463_82554583	1.90143	Nanog	ENSMUST00000062446.7|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000102812.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000075372.5|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000080658.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000152071.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114674.3|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000142850.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000133193.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000123251.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000153478.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000132369.1|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr10_+_130322845_130322856	1.86748	Nanog	ENSMUST00000042586.8|Tespa1|ENSMUSG00000034833.9|thymocyte expressed, positive selection associated 1
mm10_v2_chr17_-_81649607_81649607	1.86353	Nanog	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr6_-_102464667_102464667	1.85565	Nanog	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr11_+_115154139_115154194	1.8266	Nanog	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr3_+_105904377_105904423	1.81419	Nanog	ENSMUST00000000574.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr9_-_15357692_15357788	1.79897	Nanog	ENSMUST00000098979.3|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene 	ENSMUST00000161132.1|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene
mm10_v2_chr7_-_115846080_115846112	1.75609	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr15_+_9436028_9436083	1.74329	Nanog	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr3_-_107239707_107239707	1.66425	Nanog	ENSMUST00000049852.8|Prok1|ENSMUSG00000070368.5|prokineticin 1
mm10_v2_chr6_-_50456085_50456174	1.64217	Nanog	ENSMUST00000146341.1|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3 	ENSMUST00000071728.4|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr13_-_19732929_19732954	1.59677	Nanog	ENSMUST00000151029.1|A530099J19Rik|ENSMUSG00000047462.8|RIKEN cDNA A530099J19 gene
mm10_v2_chr6_-_136922169_136922198	1.55511	Nanog	ENSMUST00000032343.6|Erp27|ENSMUSG00000030219.7|endoplasmic reticulum protein 27
mm10_v2_chr13_-_89742490_89742515	1.54983	Nanog	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr12_-_83487708_83487729	1.54122	Nanog	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr11_+_62820469_62820489	1.53963	Nanog	ENSMUST00000108703.1|Trim16|ENSMUSG00000047821.10|tripartite motif-containing 16
mm10_v2_chr7_+_43437073_43437174	1.53089	Nanog	ENSMUST00000070518.2|Nkg7|ENSMUSG00000004612.8|natural killer cell group 7 sequence
mm10_v2_chr17_-_51826562_51826601	1.51016	Nanog	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr4_+_12906838_12906881	1.50766	Nanog	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chrX_+_48146436_48146482	1.49037	Nanog	ENSMUST00000033427.6|Sash3|ENSMUSG00000031101.6|SAM and SH3 domain containing 3
mm10_v2_chr4_+_126024506_126024550	1.46132	Nanog	ENSMUST00000106162.1|Csf3r|ENSMUSG00000028859.8|colony stimulating factor 3 receptor (granulocyte)
mm10_v2_chr14_-_49245389_49245441	1.44547	Nanog	ENSMUST00000130853.1|1700011H14Rik|ENSMUSG00000021850.7|RIKEN cDNA 1700011H14 gene 	ENSMUST00000022398.7|1700011H14Rik|ENSMUSG00000021850.7|RIKEN cDNA 1700011H14 gene
mm10_v2_chr17_-_47834682_47834691	1.43536	Nanog	ENSMUST00000066368.6|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor
mm10_v2_chr5_-_138172383_138172422	1.40086	Nanog	ENSMUST00000000505.9|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chrX_+_49470450_49470548	1.39354	Nanog	ENSMUST00000114904.3|Arhgap36|ENSMUSG00000036198.6|Rho GTPase activating protein 36
mm10_v2_chr13_+_44729794_44729807	1.38479	Nanog	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr16_+_44765732_44765751	1.38006	Nanog	ENSMUST00000057488.8|Cd200r1|ENSMUSG00000022667.11|CD200 receptor 1
mm10_v2_chr4_+_43506966_43507034	1.37722	Nanog	ENSMUST00000030183.3|Car9|ENSMUSG00000028463.8|carbonic anhydrase 9
mm10_v2_chr7_+_28693032_28693144	1.35996	Nanog	ENSMUST00000151227.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27 	ENSMUST00000108281.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr1_-_87101590_87101617	1.35598	Nanog	ENSMUST00000113270.2|Alpi|ENSMUSG00000079440.2|alkaline phosphatase, intestinal
mm10_v2_chr16_+_19760902_19761054	1.35135	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr12_+_69790288_69790288	1.33988	Nanog	ENSMUST00000021378.3|4930512B01Rik|ENSMUSG00000020992.3|RIKEN cDNA 4930512B01 gene
mm10_v2_chr7_-_141655319_141655395	1.33175	Nanog	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr3_+_103860265_103860293	1.32945	Nanog	ENSMUST00000029433.7|Ptpn22|ENSMUSG00000027843.7|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
mm10_v2_chr6_-_145047636_145047661	1.32656	Nanog	ENSMUST00000149769.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chrX_+_49470555_49470579	1.30529	Nanog	ENSMUST00000042444.6|Arhgap36|ENSMUSG00000036198.6|Rho GTPase activating protein 36
mm10_v2_chr4_+_101507947_101508032	1.30468	Nanog	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr17_-_43543639_43543639	1.29714	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr6_+_125552948_125552980	1.29532	Nanog	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr13_-_47106176_47106206	1.2944	Nanog	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr17_+_35841668_35841683	1.2761	Nanog	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr18_+_35553401_35553421	1.26411	Nanog	ENSMUST00000181664.1|Snhg4|ENSMUSG00000097769.1|small nucleolar RNA host gene 4 (non-protein coding)
mm10_v2_chr3_-_37312418_37312465	1.26241	Nanog	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr2_+_57997884_57997884	1.25589	Nanog	ENSMUST00000112616.1|Galnt5|ENSMUSG00000026828.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 	ENSMUST00000166729.1|Galnt5|ENSMUSG00000026828.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5
mm10_v2_chr13_-_12258093_12258134	1.25181	Nanog	ENSMUST00000099856.4|Mtr|ENSMUSG00000021311.8|5-methyltetrahydrofolate-homocysteine methyltransferase
mm10_v2_chr7_-_45694369_45694406	1.25016	Nanog	ENSMUST00000040636.6|Sec1|ENSMUSG00000040364.6|secretory blood group 1
mm10_v2_chr4_-_149454971_149454986	1.24513	Nanog	ENSMUST00000030848.2|Rbp7|ENSMUSG00000028996.3|retinol binding protein 7, cellular
mm10_v2_chr11_-_20332689_20332774	1.23598	Nanog	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr5_+_25246775_25246802	1.23306	Nanog	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr18_-_15063560_15063617	1.22775	Nanog	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr3_-_49757257_49757316	1.21669	Nanog	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr15_-_93519499_93519526	1.20165	Nanog	ENSMUST00000109255.2|Prickle1|ENSMUSG00000036158.6|prickle homolog 1 (Drosophila)
mm10_v2_chr11_-_20332654_20332688	1.19495	Nanog	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr5_+_30711849_30711905	1.17869	Nanog	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr6_+_125145235_125145251	1.1666	Nanog	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr2_-_45112890_45113010	1.14073	Nanog	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr13_-_51567084_51567084	1.13405	Nanog	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr2_+_125152505_125152606	1.12877	Nanog	ENSMUST00000110494.2|Slc12a1|ENSMUSG00000027202.6|solute carrier family 12, member 1 	ENSMUST00000028630.2|Slc12a1|ENSMUSG00000027202.6|solute carrier family 12, member 1 	ENSMUST00000110495.2|Slc12a1|ENSMUSG00000027202.6|solute carrier family 12, member 1
mm10_v2_chr3_-_144819494_144819494	1.11741	Nanog	ENSMUST00000029929.7|Clca2|ENSMUSG00000028262.9|chloride channel calcium activated 2
mm10_v2_chr17_+_8849974_8850001	1.10453	Nanog	ENSMUST00000115720.1|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr19_+_8802486_8802530	1.08857	Nanog	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr4_-_43046196_43046220	1.08011	Nanog	ENSMUST00000036462.5|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr13_-_19619820_19619830	1.07852	Nanog	ENSMUST00000002885.6|Epdr1|ENSMUSG00000002808.6|ependymin related protein 1 (zebrafish)
mm10_v2_chr3_+_79884576_79884597	1.07565	Nanog	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr5_-_16731074_16731074	1.07115	Nanog	ENSMUST00000073014.5|Gm8991|ENSMUSG00000059179.5|predicted pseudogene 8991
mm10_v2_chr10_-_127351753_127351772	1.0688	Nanog	ENSMUST00000059718.4|Inhbe|ENSMUSG00000047492.4|inhibin beta E
mm10_v2_chr3_+_10088173_10088173	1.04649	Nanog	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chrX_+_159840463_159840481	1.04112	Nanog	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr11_-_101095367_101095439	1.03669	Nanog	ENSMUST00000019447.8|Psmc3ip|ENSMUSG00000019303.8|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm10_v2_chr1_+_172555932_172555942	1.03275	Nanog	ENSMUST00000061835.3|Vsig8|ENSMUSG00000049598.3|V-set and immunoglobulin domain containing 8
mm10_v2_chr12_+_72441852_72441866	1.02934	Nanog	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr7_+_25267669_25267723	1.01447	Nanog	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr19_-_32196393_32196428	0.975897	Nanog	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr2_+_130274437_130274492	0.967555	Nanog	ENSMUST00000141872.1|Nop56|ENSMUSG00000027405.10|NOP56 ribonucleoprotein
mm10_v2_chr17_+_78491549_78491565	0.961039	Nanog	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr10_+_33905015_33905111	0.959816	Nanog	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr4_-_83052229_83052339	0.953673	Nanog	ENSMUST00000107230.1|Frem1|ENSMUSG00000059049.8|Fras1 related extracellular matrix protein 1
mm10_v2_chr9_-_44342332_44342381	0.939268	Nanog	ENSMUST00000097558.3|Hmbs|ENSMUSG00000032126.9|hydroxymethylbilane synthase
mm10_v2_chr14_-_18270953_18271067	0.933952	Nanog	ENSMUST00000100799.2|Rpl15|ENSMUSG00000012405.9|ribosomal protein L15 	ENSMUST00000079419.4|Rpl15|ENSMUSG00000012405.9|ribosomal protein L15 	ENSMUST00000080281.7|Rpl15|ENSMUSG00000012405.9|ribosomal protein L15
mm10_v2_chr3_-_82876483_82876527	0.932588	Nanog	ENSMUST00000048647.7|Rbm46|ENSMUSG00000033882.9|RNA binding motif protein 46
mm10_v2_chr6_-_116716888_116716923	0.924744	Nanog	ENSMUST00000056623.6|Tmem72|ENSMUSG00000048108.7|transmembrane protein 72
mm10_v2_chrX_+_7822289_7822289	0.924654	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr8_+_110721462_110721486	0.912537	Nanog	ENSMUST00000052457.8|Mtss1l|ENSMUSG00000033763.8|metastasis suppressor 1-like
mm10_v2_chr11_-_98053415_98053467	0.911771	Nanog	ENSMUST00000017544.2|Stac2|ENSMUSG00000017400.4|SH3 and cysteine rich domain 2
mm10_v2_chr15_-_13173607_13173644	0.911085	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr7_-_116084635_116084635	0.911082	Nanog	ENSMUST00000111755.3|Gm4353|ENSMUSG00000091900.2|predicted gene 4353
mm10_v2_chr15_-_34356421_34356421	0.899434	Nanog	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr3_+_65666223_65666259	0.89174	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr2_+_127909058_127909058	0.889915	Nanog	ENSMUST00000110344.1|Acoxl|ENSMUSG00000027380.4|acyl-Coenzyme A oxidase-like
mm10_v2_chr18_+_37518341_37518359	0.887139	Nanog	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr5_-_99978914_99978966	0.88606	Nanog	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr4_+_101507855_101507871	0.86683	Nanog	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr1_-_172027251_172027268	0.854762	Nanog	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr17_+_7170101_7170132	0.850739	Nanog	ENSMUST00000024575.6|Rps6ka2|ENSMUSG00000023809.9|ribosomal protein S6 kinase, polypeptide 2
mm10_v2_chr6_-_142473075_142473115	0.847672	Nanog	ENSMUST00000032371.7|Gys2|ENSMUSG00000030244.7|glycogen synthase 2
mm10_v2_chr3_-_55055038_55055055	0.837118	Nanog	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr7_+_113514085_113514109	0.811538	Nanog	ENSMUST00000122890.1|Far1|ENSMUSG00000030759.10|fatty acyl CoA reductase 1
mm10_v2_chr16_+_20696175_20696211	0.799531	Nanog	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr7_+_128246953_128246993	0.790211	Nanog	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr9_+_106368594_106368640	0.786001	Nanog	ENSMUST00000172306.2|Dusp7|ENSMUSG00000053716.7|dual specificity phosphatase 7
mm10_v2_chr4_+_48585193_48585215	0.785561	Nanog	ENSMUST00000107703.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr11_-_40733373_40733442	0.777472	Nanog	ENSMUST00000020579.8|Hmmr|ENSMUSG00000020330.10|hyaluronan mediated motility receptor (RHAMM)
mm10_v2_chr7_+_112742025_112742060	0.770446	Nanog	ENSMUST00000164363.1|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr6_+_71909046_71909076	0.763041	Nanog	ENSMUST00000055296.8|Polr1a|ENSMUSG00000049553.9|polymerase (RNA) I polypeptide A
mm10_v2_chr10_-_61476937_61476937	0.75958	Nanog	ENSMUST00000051330.4|D830039M14Rik|ENSMUSG00000043126.4|RIKEN cDNA D830039M14 gene
mm10_v2_chr6_-_29179584_29179584	0.757989	Nanog	ENSMUST00000159200.1|Prrt4|ENSMUSG00000079654.3|proline-rich transmembrane protein 4
mm10_v2_chr8_-_120589304_120589304	0.757591	Nanog	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr3_+_54481429_54481429	0.747833	Nanog	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chr11_-_99244058_99244136	0.733509	Nanog	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr13_+_23752267_23752351	0.720741	Nanog	ENSMUST00000091703.2|Hist1h3b|ENSMUSG00000069267.2|histone cluster 1, H3b
mm10_v2_chr10_+_62252325_62252438	0.716323	Nanog	ENSMUST00000020278.5|Tacr2|ENSMUSG00000020081.5|tachykinin receptor 2
mm10_v2_chr12_+_72441933_72441970	0.713373	Nanog	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr7_-_110769345_110769345	0.709558	Nanog	ENSMUST00000098108.2|B430319F04Rik|ENSMUSG00000073866.2|RIKEN cDNA B430319F04 gene
mm10_v2_chrX_-_56822308_56822346	0.705644	Nanog	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr1_+_89454769_89454885	0.694394	Nanog	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr10_-_62422427_62422491	0.677382	Nanog	ENSMUST00000020277.8|Hkdc1|ENSMUSG00000020080.8|hexokinase domain containing 1
mm10_v2_chr6_-_124779686_124779742	0.668464	Nanog	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr13_+_111686303_111686351	0.667918	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chrX_+_169879596_169879664	0.637199	Nanog	ENSMUST00000112105.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000078947.5|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr4_+_109415631_109415648	0.635644	Nanog	ENSMUST00000106618.1|Ttc39a|ENSMUSG00000028555.9|tetratricopeptide repeat domain 39A
mm10_v2_chr2_+_112379204_112379253	0.627519	Nanog	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr4_-_11386757_11386783	0.624566	Nanog	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr3_-_63851251_63851359	0.624198	Nanog	ENSMUST00000162269.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000159676.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000175947.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1
mm10_v2_chr3_+_37348645_37348716	0.615071	Nanog	ENSMUST00000038885.3|Fgf2|ENSMUSG00000037225.7|fibroblast growth factor 2
mm10_v2_chr12_+_3891728_3891801	0.614956	Nanog	ENSMUST00000172689.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000111186.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr7_-_105574324_105574402	0.609725	Nanog	ENSMUST00000081165.7|Apbb1|ENSMUSG00000037032.9|amyloid beta (A4) precursor protein-binding, family B, member 1
mm10_v2_chr19_+_25672408_25672420	0.60769	Nanog	ENSMUST00000053068.5|Dmrt2|ENSMUSG00000048138.9|doublesex and mab-3 related transcription factor 2
mm10_v2_chr7_+_128246812_128246948	0.606606	Nanog	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr1_+_135584773_135584773	0.604568	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr17_-_32800938_32800938	0.604306	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chr1_+_172956768_172956768	0.594693	Nanog	ENSMUST00000038432.4|Olfr16|ENSMUSG00000037924.4|olfactory receptor 16
mm10_v2_chr2_+_173153048_173153080	0.58406	Nanog	ENSMUST00000029017.5|Pck1|ENSMUSG00000027513.5|phosphoenolpyruvate carboxykinase 1, cytosolic
mm10_v2_chr8_-_34965631_34965714	0.58084	Nanog	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr2_+_162943474_162943516	0.578997	Nanog	ENSMUST00000035751.5|L3mbtl1|ENSMUSG00000035576.7|l(3)mbt-like (Drosophila) 	ENSMUST00000156954.1|L3mbtl1|ENSMUSG00000035576.7|l(3)mbt-like (Drosophila)
mm10_v2_chrX_-_53269786_53269858	0.571895	Nanog	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr17_-_15826521_15826590	0.554352	Nanog	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr10_+_69785507_69785525	0.546798	Nanog	ENSMUST00000182993.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr1_+_174501796_174501843	0.546156	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr12_-_111813834_111813858	0.539612	Nanog	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr5_-_115652974_115652992	0.532632	Nanog	ENSMUST00000121746.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64 	ENSMUST00000118576.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64
mm10_v2_chr4_-_58553553_58553898	0.532206	Nanog	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr10_-_81364846_81364859	0.525458	Nanog	ENSMUST00000131736.1|4930404N11Rik|ENSMUSG00000020234.4|RIKEN cDNA 4930404N11 gene
mm10_v2_chr16_-_3872378_3872411	0.5161	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr19_-_50030735_50030735	0.515411	Nanog	ENSMUST00000071866.1|Rpl13a-ps1|ENSMUSG00000062083.1|ribosomal protein 13A, pseudogene 1
mm10_v2_chr1_-_174250976_174250976	0.50906	Nanog	ENSMUST00000061990.4|Olfr419|ENSMUSG00000050788.4|olfactory receptor 419
mm10_v2_chr19_-_53464721_53464833	0.503934	Nanog	ENSMUST00000180489.1|5830416P10Rik|ENSMUSG00000097636.1|RIKEN cDNA 5830416P10 gene
mm10_v2_chr14_+_53763083_53763185	0.497951	Nanog	ENSMUST00000180859.1|Trav14-3|ENSMUSG00000094212.2|T cell receptor alpha variable 14-3 	ENSMUST00000103589.4|Trav14-3|ENSMUSG00000094212.2|T cell receptor alpha variable 14-3
mm10_v2_chr5_+_19907502_19907551	0.490876	Nanog	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr18_-_78206408_78206440	0.489879	Nanog	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr11_+_46404720_46404730	0.483308	Nanog	ENSMUST00000063166.5|Fam71b|ENSMUSG00000020401.6|family with sequence similarity 71, member B
mm10_v2_chr10_+_88885992_88886010	0.472477	Nanog	ENSMUST00000020255.6|Slc5a8|ENSMUSG00000020062.6|solute carrier family 5 (iodide transporter), member 8
mm10_v2_chr17_+_35841491_35841515	0.471597	Nanog	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr19_+_34100943_34100983	0.463675	Nanog	ENSMUST00000025685.6|Lipm|ENSMUSG00000056078.5|lipase, family member M
mm10_v2_chr10_+_40349265_40349387	0.454175	Nanog	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr4_+_48585135_48585187	0.45064	Nanog	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr13_+_104178797_104178872	0.445022	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr3_+_79884496_79884571	0.442915	Nanog	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr1_-_152625212_152625220	0.441325	Nanog	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr6_+_6248659_6248718	0.436692	Nanog	ENSMUST00000181633.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619 	ENSMUST00000176283.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619 	ENSMUST00000175814.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619 	ENSMUST00000181192.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619
mm10_v2_chr8_+_25720054_25720099	0.431606	Nanog	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr5_+_115011111_115011208	0.431403	Nanog	ENSMUST00000031530.5|Sppl3|ENSMUSG00000029550.8|signal peptide peptidase 3
mm10_v2_chr1_+_74362108_74362156	0.427115	Nanog	ENSMUST00000097697.1|Gm216|ENSMUSG00000073650.2|predicted gene 216
mm10_v2_chr16_+_13671922_13671937	0.416307	Nanog	ENSMUST00000035426.5|3110001I22Rik|ENSMUSG00000079737.3|RIKEN cDNA 3110001I22 gene
mm10_v2_chr15_-_50889043_50889054	0.415574	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr4_+_43059028_43059080	0.414116	Nanog	ENSMUST00000163653.1|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107952.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107953.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr4_-_46650102_46650209	0.41405	Nanog	ENSMUST00000084621.5|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2 	ENSMUST00000107750.1|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2
mm10_v2_chr9_-_66514567_66514597	0.407218	Nanog	ENSMUST00000056890.8|Fbxl22|ENSMUSG00000050503.8|F-box and leucine-rich repeat protein 22
mm10_v2_chr4_-_126968124_126968154	0.405221	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr8_-_107439585_107439593	0.404433	Nanog	ENSMUST00000077208.4|Rps26-ps1|ENSMUSG00000059775.4|ribosomal protein S26, pseudogene 1
mm10_v2_chr11_-_120549695_120549728	0.396071	Nanog	ENSMUST00000034913.4|Fam195b|ENSMUSG00000061111.8|family with sequence similarity 195, member B
mm10_v2_chr2_-_85675173_85675173	0.392934	Nanog	ENSMUST00000099917.1|Olfr1006|ENSMUSG00000075211.2|olfactory receptor 1006
mm10_v2_chr18_+_37300799_37300835	0.389903	Nanog	ENSMUST00000051754.1|Pcdhb3|ENSMUSG00000045498.1|protocadherin beta 3
mm10_v2_chr2_+_29060239_29060287	0.388868	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr7_-_25072287_25072369	0.386107	Nanog	ENSMUST00000003468.8|Grik5|ENSMUSG00000003378.8|glutamate receptor, ionotropic, kainate 5 (gamma 2)
mm10_v2_chr11_+_75531690_75531743	0.378846	Nanog	ENSMUST00000149727.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000042561.7|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000108433.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000143035.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr6_+_38551334_38551493	0.377793	Nanog	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr8_-_90908415_90908415	0.36388	Nanog	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr14_+_79515618_79515694	0.362261	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr11_-_75796048_75796081	0.355523	Nanog	ENSMUST00000021209.7|Doc2b|ENSMUSG00000020848.7|double C2, beta
mm10_v2_chr3_-_102782708_102782715	0.355006	Nanog	ENSMUST00000029450.3|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000172026.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit 	ENSMUST00000170856.1|Tshb|ENSMUSG00000027857.4|thyroid stimulating hormone, beta subunit
mm10_v2_chr2_+_110721340_110721490	0.354294	Nanog	ENSMUST00000111016.2|Muc15|ENSMUSG00000050808.7|mucin 15
mm10_v2_chr11_-_70969953_70969978	0.352687	Nanog	ENSMUST00000108530.1|Nup88|ENSMUSG00000040667.5|nucleoporin 88 	ENSMUST00000035283.4|Nup88|ENSMUSG00000040667.5|nucleoporin 88 	ENSMUST00000108531.1|Nup88|ENSMUSG00000040667.5|nucleoporin 88
mm10_v2_chr5_+_57718021_57718104	0.346826	Nanog	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr5_+_135168283_135168373	0.346311	Nanog	ENSMUST00000031692.5|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr7_+_101896817_101896961	0.337988	Nanog	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr4_+_59035088_59035247	0.330107	Nanog	ENSMUST00000041160.6|Gng10|ENSMUSG00000038607.6|guanine nucleotide binding protein (G protein), gamma 10
mm10_v2_chr13_+_23782572_23782572	0.322701	Nanog	ENSMUST00000074067.2|Trim38|ENSMUSG00000064140.2|tripartite motif-containing 38
mm10_v2_chr3_-_88621061_88621061	0.304245	Nanog	ENSMUST00000177314.1|Gm20652|ENSMUSG00000093390.1|predicted gene 20652
mm10_v2_chr8_-_35495487_35495545	0.302562	Nanog	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr7_+_3629985_3630037	0.298304	Nanog	ENSMUST00000008517.6|Prpf31|ENSMUSG00000008373.10|PRP31 pre-mRNA processing factor 31 homolog (yeast) 	ENSMUST00000179769.1|Prpf31|ENSMUSG00000008373.10|PRP31 pre-mRNA processing factor 31 homolog (yeast)
mm10_v2_chr17_+_21691860_21691860	0.29825	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chrX_-_135009185_135009225	0.294391	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr9_-_44305595_44305688	0.294114	Nanog	ENSMUST00000034629.4|Hinfp|ENSMUSG00000032119.4|histone H4 transcription factor
mm10_v2_chr7_+_28392916_28393013	0.293838	Nanog	ENSMUST00000003529.8|Paf1|ENSMUSG00000003437.8|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
mm10_v2_chr2_+_110721587_110721619	0.293389	Nanog	ENSMUST00000111017.2|Muc15|ENSMUSG00000050808.7|mucin 15
mm10_v2_chr9_-_7184440_7184518	0.289142	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr17_+_34238896_34238911	0.277337	Nanog	ENSMUST00000095342.3|H2-Ob|ENSMUSG00000041538.9|histocompatibility 2, O region beta locus
mm10_v2_chr11_-_107337556_107337637	0.272647	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr12_+_24651346_24651409	0.271365	Nanog	ENSMUST00000020982.5|Klf11|ENSMUSG00000020653.5|Kruppel-like factor 11
mm10_v2_chrX_-_153037549_153037581	0.271096	Nanog	ENSMUST00000051484.3|Mageh1|ENSMUSG00000047238.3|melanoma antigen, family H, 1
mm10_v2_chr9_-_107609182_107609214	0.270915	Nanog	ENSMUST00000102531.1|Sema3b|ENSMUSG00000057969.9|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm10_v2_chr8_-_89044162_89044195	0.270121	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr9_+_55541148_55541209	0.269904	Nanog	ENSMUST00000034869.4|Isl2|ENSMUSG00000032318.6|insulin related protein 2 (islet 2)
mm10_v2_chr18_+_34736359_34736359	0.26915	Nanog	ENSMUST00000105038.2|Gm3550|ENSMUSG00000078240.2|predicted gene 3550
mm10_v2_chr13_+_22327911_22327911	0.267829	Nanog	ENSMUST00000091734.1|Vmn1r197|ENSMUSG00000069294.1|vomeronasal 1 receptor 197
mm10_v2_chr13_-_22806518_22806518	0.267332	Nanog	ENSMUST00000095961.1|Vmn1r209|ENSMUSG00000071491.1|vomeronasal 1 receptor 209
mm10_v2_chr2_-_31810580_31810580	0.265726	Nanog	ENSMUST00000057407.2|Qrfp|ENSMUSG00000043102.2|pyroglutamylated RFamide peptide
mm10_v2_chr9_+_113930934_113930987	0.26277	Nanog	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr4_+_109343029_109343081	0.255829	Nanog	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr7_+_25681158_25681158	0.254571	Nanog	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr4_+_136310952_136310984	0.253001	Nanog	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr6_-_50043657_50043657	0.249396	Nanog	ENSMUST00000177892.1|Gm21786|ENSMUSG00000096611.1|predicted gene, 21786
mm10_v2_chr9_+_44334685_44334715	0.248561	Nanog	ENSMUST00000052686.2|H2afx|ENSMUSG00000049932.2|H2A histone family, member X
mm10_v2_chr4_+_43058939_43058969	0.24361	Nanog	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr8_-_62123106_62123123	0.243416	Nanog	ENSMUST00000034052.6|Anxa10|ENSMUSG00000031635.7|annexin A10 	ENSMUST00000034054.7|Anxa10|ENSMUSG00000031635.7|annexin A10
mm10_v2_chr16_-_19286837_19286837	0.234108	Nanog	ENSMUST00000056727.4|Olfr164|ENSMUSG00000050742.4|olfactory receptor 164
mm10_v2_chr4_+_19818722_19818743	0.23189	Nanog	ENSMUST00000035890.7|Slc7a13|ENSMUSG00000041052.8|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm10_v2_chr4_+_115088708_115088769	0.229866	Nanog	ENSMUST00000171877.1|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000177647.1|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000106548.2|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1 	ENSMUST00000030488.2|Pdzk1ip1|ENSMUSG00000028716.9|PDZK1 interacting protein 1
mm10_v2_chr15_+_78428650_78428671	0.229862	Nanog	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr4_+_94739276_94739300	0.223757	Nanog	ENSMUST00000073939.6|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase 	ENSMUST00000102798.1|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase
mm10_v2_chr12_-_28635914_28635953	0.221918	Nanog	ENSMUST00000074267.3|Rps7|ENSMUSG00000061477.3|ribosomal protein S7
mm10_v2_chr12_-_20900867_20900867	0.221336	Nanog	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr9_+_108490676_108490692	0.219424	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr10_-_25200110_25200178	0.219068	Nanog	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr7_-_30559600_30559659	0.217572	Nanog	ENSMUST00000043975.4|Lin37|ENSMUSG00000036845.6|lin-37 homolog (C. elegans) 	ENSMUST00000156241.1|Lin37|ENSMUSG00000036845.6|lin-37 homolog (C. elegans)
mm10_v2_chr12_-_34528844_34528904	0.215276	Nanog	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr2_+_115581667_115581743	0.21526	Nanog	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr7_+_103928825_103928825	0.211255	Nanog	ENSMUST00000106863.1|Olfr631|ENSMUSG00000042219.5|olfactory receptor 631
mm10_v2_chr9_-_107609215_107609246	0.210015	Nanog	ENSMUST00000102532.3|Sema3b|ENSMUSG00000057969.9|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm10_v2_chr10_-_9901079_9901250	0.205279	Nanog	ENSMUST00000141722.1|Stxbp5|ENSMUSG00000019790.10|syntaxin binding protein 5 (tomosyn)
mm10_v2_chr2_+_62664279_62664300	0.195719	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr1_-_158814469_158814469	0.189855	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr10_+_26772477_26772515	0.180272	Nanog	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr17_+_27839974_27840119	0.178043	Nanog	ENSMUST00000071006.7|Snrpc|ENSMUSG00000024217.9|U1 small nuclear ribonucleoprotein C
mm10_v2_chr15_-_78206391_78206407	0.176501	Nanog	ENSMUST00000120592.1|Pvalb|ENSMUSG00000005716.10|parvalbumin
mm10_v2_chr6_-_39725448_39725478	0.172943	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr7_+_83755904_83755956	0.171539	Nanog	ENSMUST00000051522.8|Gm7964|ENSMUSG00000063902.6|predicted gene 7964 	ENSMUST00000042280.7|Gm7964|ENSMUSG00000063902.6|predicted gene 7964
mm10_v2_chr19_-_46962301_46962351	0.170047	Nanog	ENSMUST00000168536.1|Nt5c2|ENSMUSG00000025041.10|5'-nucleotidase, cytosolic II
mm10_v2_chr5_-_124187150_124187225	0.164077	Nanog	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr7_-_89633124_89633124	0.159692	Nanog	ENSMUST00000172178.1|A230065N10Rik|ENSMUSG00000092071.1|RIKEN cDNA A230065N10 gene
mm10_v2_chr6_+_38551786_38551851	0.159375	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr13_+_22087878_22087878	0.158596	Nanog	ENSMUST00000091739.1|Vmn1r188|ENSMUSG00000069299.1|vomeronasal 1 receptor 188
mm10_v2_chr15_+_34453285_34453312	0.156271	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr17_+_38145393_38145393	0.149928	Nanog	ENSMUST00000173610.1|Olfr133|ENSMUSG00000063240.4|olfactory receptor 133
mm10_v2_chr11_-_94321957_94321988	0.14934	Nanog	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr2_-_38714491_38714542	0.147277	Nanog	ENSMUST00000028084.4|Nr5a1|ENSMUSG00000026751.8|nuclear receptor subfamily 5, group A, member 1
mm10_v2_chr3_+_88965812_88965812	0.142784	Nanog	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr4_-_135987182_135987269	0.14176	Nanog	ENSMUST00000105851.2|Pithd1|ENSMUSG00000028669.9|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
mm10_v2_chr11_+_109485606_109485713	0.141576	Nanog	ENSMUST00000106697.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr7_+_48388526_48388526	0.139913	Nanog	ENSMUST00000056676.4|Mrgprb8|ENSMUSG00000050870.4|MAS-related GPR, member B8
mm10_v2_chr1_+_153891646_153891740	0.130326	Nanog	ENSMUST00000050660.4|Teddm1|ENSMUSG00000047053.4|transmembrane epididymal protein 1
mm10_v2_chr3_-_123672321_123672400	0.129771	Nanog	ENSMUST00000172537.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 	ENSMUST00000029602.6|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr3_-_152193803_152193831	0.121868	Nanog	ENSMUST00000050073.6|Dnajb4|ENSMUSG00000028035.7|DnaJ (Hsp40) homolog, subfamily B, member 4
mm10_v2_chr6_+_30610984_30611026	0.12035	Nanog	ENSMUST00000062758.4|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr7_+_101896340_101896431	0.117034	Nanog	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chrX_-_112406779_112406779	0.117005	Nanog	ENSMUST00000026601.2|Satl1|ENSMUSG00000025527.3|spermidine/spermine N1-acetyl transferase-like 1
mm10_v2_chr14_-_78536762_78536851	0.116089	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr10_-_117224480_117224507	0.113798	Nanog	ENSMUST00000020382.6|Yeats4|ENSMUSG00000020171.7|YEATS domain containing 4
mm10_v2_chr7_-_134341975_134341996	0.107734	Nanog	ENSMUST00000106129.2|D7Ertd443e|ENSMUSG00000030994.9|DNA segment, Chr 7, ERATO Doi 443, expressed
mm10_v2_chr12_-_83921809_83921898	0.106338	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr12_-_101958148_101958246	0.0993129	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr5_-_124249758_124249782	0.0975962	Nanog	ENSMUST00000162812.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr11_+_43151599_43151599	0.0974691	Nanog	ENSMUST00000077659.5|Atp10b|ENSMUSG00000055415.7|ATPase, class V, type 10B
mm10_v2_chr11_+_75532099_75532125	0.0958758	Nanog	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr15_-_81843699_81843755	0.0879855	Nanog	ENSMUST00000092020.2|Gm8444|ENSMUSG00000069439.2|predicted gene 8444
mm10_v2_chr5_-_139484475_139484549	0.0872809	Nanog	ENSMUST00000110851.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A 	ENSMUST00000079996.6|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr19_+_7557473_7557497	0.0838929	Nanog	ENSMUST00000141887.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136756.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr3_+_106034661_106034692	0.0832927	Nanog	ENSMUST00000170669.2|Gm4540|ENSMUSG00000092072.2|predicted gene 4540
mm10_v2_chr10_+_63457505_63457539	0.0802444	Nanog	ENSMUST00000105440.1|Ctnna3|ENSMUSG00000060843.5|catenin (cadherin associated protein), alpha 3
mm10_v2_chr12_-_52028063_52028063	0.0764325	Nanog	ENSMUST00000040161.4|Gpr33|ENSMUSG00000035148.4|G protein-coupled receptor 33
mm10_v2_chr15_+_21111452_21111452	0.0681444	Nanog	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr4_+_116708467_116708509	0.0662344	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr9_-_58159201_58159239	0.0659053	Nanog	ENSMUST00000041477.7|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr4_+_154964117_154964147	0.0654729	Nanog	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
mm10_v2_chr7_-_98656530_98656600	0.0647722	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr2_+_32363680_32363810	0.0646386	Nanog	ENSMUST00000113331.1|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1 	ENSMUST00000113338.2|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1
mm10_v2_chr2_-_25224653_25224702	0.0607992	Nanog	ENSMUST00000043584.4|Tubb4b|ENSMUSG00000036752.4|tubulin, beta 4B class IVB
mm10_v2_chr5_+_121397936_121398004	0.0545323	Nanog	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr19_+_7557452_7557465	0.0531392	Nanog	ENSMUST00000025925.4|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136465.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr2_-_37703845_37703885	0.0526934	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr19_-_45783512_45783558	0.0510944	Nanog	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chrX_+_153237466_153237466	0.0504764	Nanog	ENSMUST00000143880.1|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr16_-_64479148_64479240	0.0490234	Nanog	ENSMUST00000089279.4|Csnka2ip|ENSMUSG00000068167.4|casein kinase 2, alpha prime interacting protein
mm10_v2_chr10_+_77622363_77622378	0.0427246	Nanog	ENSMUST00000172772.1|Ube2g2|ENSMUSG00000009293.11|ubiquitin-conjugating enzyme E2G 2
mm10_v2_chr14_-_55524975_55524985	0.0351338	Nanog	ENSMUST00000062232.7|Nrl|ENSMUSG00000040632.9|neural retina leucine zipper gene
mm10_v2_chr6_+_30611029_30611051	0.0339299	Nanog	ENSMUST00000115138.1|Cpa5|ENSMUSG00000029788.7|carboxypeptidase A5
mm10_v2_chr15_-_97247287_97247315	0.0335152	Nanog	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr19_-_56822161_56822220	0.0325094	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr10_-_128626464_128626520	0.0322825	Nanog	ENSMUST00000026420.5|Rps26|ENSMUSG00000025362.5|ribosomal protein S26
mm10_v2_chr16_+_16983454_16983567	0.0277674	Nanog	ENSMUST00000115731.1|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1
mm10_v2_chrX_-_50942710_50942758	0.026149	Nanog	ENSMUST00000060650.5|Frmd7|ENSMUSG00000036131.6|FERM domain containing 7
mm10_v2_chr15_+_39745926_39745937	0.025718	Nanog	ENSMUST00000022913.4|Dcstamp|ENSMUSG00000022303.8|dentrocyte expressed seven transmembrane protein
mm10_v2_chr6_+_83185946_83186151	0.0252738	Nanog	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr8_+_84686300_84686348	0.0195058	Nanog	ENSMUST00000177531.1|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1
mm10_v2_chr3_+_103968110_103968446	0.018711	Nanog	ENSMUST00000117150.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000063717.7|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000055425.8|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000123611.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000090685.4|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr7_+_135396330_135396362	0.017893	Nanog	ENSMUST00000097982.2|4930544L04Rik|ENSMUSG00000073803.2|RIKEN cDNA 4930544L04 gene
mm10_v2_chr17_+_25736040_25736040	0.0166519	Nanog	ENSMUST00000047098.5|Mslnl|ENSMUSG00000041062.6|mesothelin-like
mm10_v2_chr17_+_20945311_20945355	0.0148275	Nanog	ENSMUST00000007708.7|Ppp2r1a|ENSMUSG00000007564.8|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm10_v2_chr1_+_50927511_50927543	0.0122423	Nanog	ENSMUST00000081851.3|Tmeff2|ENSMUSG00000026109.8|transmembrane protein with EGF-like and two follistatin-like domains 2
mm10_v2_chr12_-_33092875_33092902	0.00934457	Nanog	ENSMUST00000095774.2|Cdhr3|ENSMUSG00000035860.8|cadherin-related family member 3
mm10_v2_chr7_-_27195727_27195768	0.00625577	Nanog	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
