mm10_v2_chr11_-_99322943_99322957	4.49838	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000038004.2|Krt25|ENSMUSG00000035831.2|keratin 25
mm10_v2_chr4_+_34893772_34893788	3.84971	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029975.3|Cga|ENSMUSG00000028298.4|glycoprotein hormones, alpha subunit 	ENSMUST00000135871.1|Cga|ENSMUSG00000028298.4|glycoprotein hormones, alpha subunit 	ENSMUST00000108130.1|Cga|ENSMUSG00000028298.4|glycoprotein hormones, alpha subunit
mm10_v2_chr5_-_134747241_134747264	2.77662	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015138.9|Eln|ENSMUSG00000029675.9|elastin
mm10_v2_chr7_+_126950518_126950584	2.30227	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr2_-_168767029_168767104	2.23937	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr7_+_126950687_126950729	2.21452	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr14_+_27000362_27000507	2.00993	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035433.8|Hesx1|ENSMUSG00000040726.8|homeobox gene expressed in ES cells
mm10_v2_chr1_-_79440039_79440090	1.99921	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049972.4|Scg2|ENSMUSG00000050711.6|secretogranin II
mm10_v2_chr7_+_126950837_126950966	1.86252	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr2_-_72986716_72986716	1.5623	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr3_-_116253467_116253484	1.51908	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr6_-_116716888_116716923	1.45513	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056623.6|Tmem72|ENSMUSG00000048108.7|transmembrane protein 72
mm10_v2_chr9_+_43310763_43310806	1.44891	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034511.5|Trim29|ENSMUSG00000032013.5|tripartite motif-containing 29
mm10_v2_chr12_-_83487708_83487729	1.33595	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr12_+_109545390_109545443	1.32115	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr2_+_69219971_69220005	1.27079	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005364.5|G6pc2|ENSMUSG00000005232.5|glucose-6-phosphatase, catalytic, 2 	ENSMUST00000112317.2|G6pc2|ENSMUSG00000005232.5|glucose-6-phosphatase, catalytic, 2
mm10_v2_chr2_+_9882622_9882646	1.15689	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114919.1|4930412O13Rik|ENSMUSG00000025783.2|RIKEN cDNA 4930412O13 gene
mm10_v2_chr16_-_42340595_42340651	1.12375	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102817.4|Gap43|ENSMUSG00000047261.9|growth associated protein 43
mm10_v2_chr11_+_67200052_67200111	1.10096	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124516.1|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult 	ENSMUST00000018637.8|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult
mm10_v2_chr2_-_168767136_168767201	1.10016	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr10_+_115569986_115570035	1.07837	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173620.1|A930009A15Rik|ENSMUSG00000092210.1|RIKEN cDNA A930009A15 gene
mm10_v2_chr11_+_102604370_102604435	1.06934	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057893.5|Fzd2|ENSMUSG00000050288.5|frizzled homolog 2 (Drosophila)
mm10_v2_chr6_-_136781718_136781806	1.05025	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078095.6|Gucy2c|ENSMUSG00000042638.8|guanylate cyclase 2c 	ENSMUST00000032338.7|Gucy2c|ENSMUSG00000042638.8|guanylate cyclase 2c
mm10_v2_chr2_+_74697663_74697680	1.04969	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000059272.8|Hoxd9|ENSMUSG00000043342.8|homeobox D9
mm10_v2_chr15_-_79285502_79285537	0.994664	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165408.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chr9_+_43829963_43829963	0.91755	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180221.1|Gm3898|ENSMUSG00000096322.1|predicted gene 3898
mm10_v2_chr16_-_63864114_63864182	0.903164	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr2_-_116067391_116067444	0.843388	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr13_-_78196373_78196440	0.841088	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125176.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr2_+_127909058_127909058	0.831222	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110344.1|Acoxl|ENSMUSG00000027380.4|acyl-Coenzyme A oxidase-like
mm10_v2_chr15_-_79285470_79285498	0.790373	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170955.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chr2_+_25372315_25372368	0.746678	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000028329.6|Sapcd2|ENSMUSG00000026955.7|suppressor APC domain containing 2 	ENSMUST00000114293.2|Sapcd2|ENSMUSG00000026955.7|suppressor APC domain containing 2 	ENSMUST00000100323.2|Sapcd2|ENSMUSG00000026955.7|suppressor APC domain containing 2
mm10_v2_chr7_-_66427469_66427517	0.73398	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015278.7|Aldh1a3|ENSMUSG00000015134.8|aldehyde dehydrogenase family 1, subfamily A3
mm10_v2_chr3_-_49757257_49757316	0.721029	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr13_+_55399648_55399700	0.703817	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057167.7|Slc34a1|ENSMUSG00000021490.10|solute carrier family 34 (sodium phosphate), member 1
mm10_v2_chr18_+_23415400_23415454	0.699704	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115832.2|Dtna|ENSMUSG00000024302.9|dystrobrevin alpha 	ENSMUST00000047954.7|Dtna|ENSMUSG00000024302.9|dystrobrevin alpha
mm10_v2_chr11_-_87359011_87359081	0.690769	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr14_-_110755100_110755152	0.680343	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078386.2|Slitrk6|ENSMUSG00000045871.4|SLIT and NTRK-like family, member 6
mm10_v2_chr6_+_125552948_125552980	0.674161	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr19_-_7966000_7966037	0.665429	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182102.1|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27 	ENSMUST00000075619.4|Slc22a27|ENSMUSG00000067656.7|solute carrier family 22, member 27
mm10_v2_chr5_-_53707532_53707704	0.652956	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031093.3|Cckar|ENSMUSG00000029193.4|cholecystokinin A receptor
mm10_v2_chr17_-_35697971_35698001	0.652567	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr5_+_34999111_34999184	0.635291	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr19_-_55241236_55241236	0.62187	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000069183.6|Gucy2g|ENSMUSG00000055523.6|guanylate cyclase 2g
mm10_v2_chr5_+_34999046_34999069	0.621162	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114281.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr15_-_13173607_13173644	0.604218	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr3_+_68572245_68572392	0.592526	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr17_-_31198958_31198976	0.591677	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114549.2|Tmprss3|ENSMUSG00000024034.6|transmembrane protease, serine 3
mm10_v2_chr15_-_34356421_34356421	0.571971	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179647.1|9430069I07Rik|ENSMUSG00000094447.1|RIKEN cDNA 9430069I07 gene
mm10_v2_chr17_+_49615104_49615172	0.555857	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162854.1|Kif6|ENSMUSG00000023999.8|kinesin family member 6
mm10_v2_chrX_-_139871637_139871677	0.535045	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033811.7|Morc4|ENSMUSG00000031434.9|microrchidia 4 	ENSMUST00000087401.5|Morc4|ENSMUSG00000031434.9|microrchidia 4
mm10_v2_chr11_-_99244058_99244136	0.534651	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr11_+_67798269_67798288	0.518263	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000168612.1|Dhrs7c|ENSMUSG00000033044.6|dehydrogenase/reductase (SDR family) member 7C 	ENSMUST00000040574.4|Dhrs7c|ENSMUSG00000033044.6|dehydrogenase/reductase (SDR family) member 7C
mm10_v2_chr9_-_40346290_40346337	0.502456	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chrX_-_74246534_74246556	0.49164	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101454.2|Flna|ENSMUSG00000031328.9|filamin, alpha 	ENSMUST00000033699.6|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr1_-_4360256_4360314	0.456951	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027032.4|Rp1|ENSMUSG00000025900.5|retinitis pigmentosa 1 (human)
mm10_v2_chr5_+_34999070_34999086	0.453254	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr17_+_27556641_27556658	0.452215	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119486.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118599.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr9_+_45370185_45370208	0.447666	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000085939.6|Fxyd6|ENSMUSG00000066705.6|FXYD domain-containing ion transport regulator 6
mm10_v2_chr7_-_45830776_45830944	0.445559	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr2_+_38341068_38341092	0.439586	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133661.1|Lhx2|ENSMUSG00000000247.5|LIM homeobox protein 2
mm10_v2_chr17_+_35533194_35533208	0.439082	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025273.8|Psors1c2|ENSMUSG00000024409.8|psoriasis susceptibility 1 candidate 2 (human)
mm10_v2_chr17_+_27556668_27556690	0.438913	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117254.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118570.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr9_+_119063429_119063467	0.438521	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr2_+_152754156_152754186	0.425699	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000010020.5|Cox4i2|ENSMUSG00000009876.7|cytochrome c oxidase subunit IV isoform 2
mm10_v2_chr17_+_27556613_27556635	0.422347	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117600.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000114888.3|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr9_+_106368594_106368640	0.418236	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000172306.2|Dusp7|ENSMUSG00000053716.7|dual specificity phosphatase 7
mm10_v2_chr9_+_38877126_38877126	0.415826	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078289.2|Olfr926|ENSMUSG00000064333.2|olfactory receptor 926
mm10_v2_chr11_-_98053415_98053467	0.405573	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000017544.2|Stac2|ENSMUSG00000017400.4|SH3 and cysteine rich domain 2
mm10_v2_chr3_+_159839729_159839745	0.395301	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068952.5|Wls|ENSMUSG00000028173.6|wntless homolog (Drosophila)
mm10_v2_chr10_-_80421847_80421876	0.389302	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156244.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3
mm10_v2_chr10_-_53647080_53647080	0.377132	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169866.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr13_-_113663670_113663681	0.371306	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054650.4|Hspb3|ENSMUSG00000051456.4|heat shock protein 3
mm10_v2_chr4_+_5724304_5724357	0.366183	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr6_-_30958990_30958990	0.357225	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101589.3|Klf14|ENSMUSG00000073209.3|Kruppel-like factor 14
mm10_v2_chr6_+_123262107_123262185	0.355271	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032240.2|Clec4d|ENSMUSG00000030144.2|C-type lectin domain family 4, member d
mm10_v2_chr18_-_37969742_37969782	0.343768	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166148.1|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1 	ENSMUST00000163131.1|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1 	ENSMUST00000043437.7|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1
mm10_v2_chr16_+_45093611_45093622	0.339567	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099498.2|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr3_-_55055038_55055055	0.32361	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr17_-_49564262_49564337	0.314368	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057610.6|Daam2|ENSMUSG00000040260.7|dishevelled associated activator of morphogenesis 2
mm10_v2_chr16_-_74411292_74411430	0.3073	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr12_+_52699297_52699411	0.306523	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr8_+_121116163_121116177	0.304501	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054691.6|Foxc2|ENSMUSG00000046714.6|forkhead box C2
mm10_v2_chr8_+_4238733_4238767	0.303062	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110998.2|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000062686.4|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr2_-_45117349_45117395	0.302487	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr17_+_12119274_12119348	0.299778	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chrX_+_56454871_56454887	0.297135	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr8_-_79248537_79248583	0.28432	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034109.4|1700011L22Rik|ENSMUSG00000031682.4|RIKEN cDNA 1700011L22 gene
mm10_v2_chr9_+_96258697_96258711	0.281406	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179416.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr17_-_29888570_29888629	0.268813	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171691.1|Mdga1|ENSMUSG00000043557.9|MAM domain containing glycosylphosphatidylinositol anchor 1
mm10_v2_chr11_+_67200137_67200148	0.265942	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000129018.1|Myh1|ENSMUSG00000056328.8|myosin, heavy polypeptide 1, skeletal muscle, adult
mm10_v2_chrX_+_133850980_133851129	0.264192	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033602.8|Tnmd|ENSMUSG00000031250.8|tenomodulin
mm10_v2_chr2_+_27165233_27165233	0.262741	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000000910.6|Dbh|ENSMUSG00000000889.8|dopamine beta hydroxylase
mm10_v2_chr7_+_43781054_43781078	0.261286	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000014058.9|Klk10|ENSMUSG00000030693.9|kallikrein related-peptidase 10
mm10_v2_chr17_+_46161021_46161072	0.259554	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024748.7|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2 	ENSMUST00000172170.1|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2
mm10_v2_chr1_-_52190901_52190915	0.256457	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156887.1|Gls|ENSMUSG00000026103.8|glutaminase 	ENSMUST00000129107.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr11_-_119547744_119547759	0.255702	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr7_+_30763750_30763765	0.252529	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165887.1|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000085691.4|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000085688.4|Dmkn|ENSMUSG00000060962.6|dermokine 	ENSMUST00000054427.6|Dmkn|ENSMUSG00000060962.6|dermokine
mm10_v2_chr8_+_4238815_4238886	0.251977	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003027.7|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000110999.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr6_-_52226165_52226196	0.248775	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114425.2|Hoxa9|ENSMUSG00000038227.9|homeobox A9
mm10_v2_chr13_-_53473074_53473074	0.240536	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021922.8|Msx2|ENSMUSG00000021469.8|msh homeobox 2
mm10_v2_chr2_+_130012336_130012350	0.239461	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110299.2|Tgm3|ENSMUSG00000027401.9|transglutaminase 3, E polypeptide
mm10_v2_chr15_-_66812593_66812649	0.23493	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100572.3|Sla|ENSMUSG00000022372.8|src-like adaptor
mm10_v2_chr6_-_128275577_128275577	0.234276	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000130454.1|Tead4|ENSMUSG00000030353.9|TEA domain family member 4
mm10_v2_chr15_+_101473472_101473478	0.234036	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088049.3|Krt86|ENSMUSG00000067614.4|keratin 86
mm10_v2_chr12_-_111813834_111813858	0.224713	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr5_+_27261916_27261980	0.224368	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101471.3|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr2_+_52038005_52038020	0.220763	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000065927.5|Tnfaip6|ENSMUSG00000053475.5|tumor necrosis factor alpha induced protein 6
mm10_v2_chr19_+_24673998_24674017	0.217275	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057243.4|Tmem252|ENSMUSG00000048572.4|transmembrane protein 252
mm10_v2_chr5_-_5266038_5266292	0.211664	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr2_+_3114220_3114225	0.211462	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chrX_+_159303266_159303281	0.209587	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr18_-_24603464_24603530	0.20461	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr12_+_38781093_38781129	0.203424	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161513.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr12_-_104473236_104473324	0.202476	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021513.4|Gsc|ENSMUSG00000021095.4|goosecoid homeobox
mm10_v2_chr2_+_106693185_106693278	0.197963	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr15_+_102966794_102966812	0.194989	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001699.7|Hoxc10|ENSMUSG00000022484.7|homeobox C10
mm10_v2_chr13_+_118714678_118714701	0.191966	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr13_-_73678005_73678026	0.190545	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022105.7|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18 	ENSMUST00000109680.2|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18 	ENSMUST00000109679.2|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18
mm10_v2_chr10_+_88146992_88147037	0.188855	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr17_+_75005523_75005568	0.185602	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr4_-_129558355_129558378	0.18277	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167288.1|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase 	ENSMUST00000134336.1|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase
mm10_v2_chr4_-_129558387_129558398	0.181999	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067240.4|Lck|ENSMUSG00000000409.8|lymphocyte protein tyrosine kinase
mm10_v2_chr6_+_37870786_37870882	0.172127	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr18_-_24603791_24603843	0.168496	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070726.3|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr1_-_172027269_172027313	0.165695	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr15_+_79690869_79690905	0.163875	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr1_-_172027251_172027268	0.162694	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr6_-_102464667_102464667	0.161631	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr14_-_108914237_108914257	0.160691	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr6_+_6248659_6248718	0.159871	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181633.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619 	ENSMUST00000176283.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619 	ENSMUST00000175814.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619 	ENSMUST00000181192.1|Gm20619|ENSMUSG00000093482.2|predicted gene 20619
mm10_v2_chr10_+_88885992_88886010	0.157127	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020255.6|Slc5a8|ENSMUSG00000020062.6|solute carrier family 5 (iodide transporter), member 8
mm10_v2_chr6_-_147264124_147264167	0.15698	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052296.6|Pthlh|ENSMUSG00000048776.6|parathyroid hormone-like peptide
mm10_v2_chrX_+_166344692_166344770	0.151659	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112223.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112224.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112229.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112228.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112227.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112226.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr1_+_172555932_172555942	0.149368	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061835.3|Vsig8|ENSMUSG00000049598.3|V-set and immunoglobulin domain containing 8
mm10_v2_chr5_-_122989086_122989111	0.147673	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr3_+_55782500_55782521	0.140649	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr3_+_61364507_61364633	0.137144	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049064.2|Rap2b|ENSMUSG00000036894.2|RAP2B, member of RAS oncogene family
mm10_v2_chr14_-_37098211_37098311	0.136129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022337.9|Cdhr1|ENSMUSG00000021803.9|cadherin-related family member 1
mm10_v2_chr5_-_122989260_122989306	0.134794	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118027.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr9_-_103222063_103222149	0.134141	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170904.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr1_+_110099295_110099295	0.133703	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134301.1|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chr8_+_83666827_83666882	0.131224	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr2_+_86007778_86007778	0.129324	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062166.1|Olfr1032|ENSMUSG00000042796.1|olfactory receptor 1032
mm10_v2_chr10_+_102159000_102159079	0.124831	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020039.6|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr8_-_62123106_62123123	0.12457	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034052.6|Anxa10|ENSMUSG00000031635.7|annexin A10 	ENSMUST00000034054.7|Anxa10|ENSMUSG00000031635.7|annexin A10
mm10_v2_chr1_-_152625212_152625220	0.123885	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr17_+_34039437_34039481	0.123495	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000131134.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000087497.4|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114255.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114252.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2
mm10_v2_chr11_+_52098681_52098796	0.123283	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020608.2|Ppp2ca|ENSMUSG00000020349.4|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm10_v2_chr8_-_87959560_87959595	0.122072	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109655.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr13_+_111255010_111255018	0.121219	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054716.3|Actbl2|ENSMUSG00000055194.3|actin, beta-like 2
mm10_v2_chr8_-_120228221_120228297	0.120364	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chr5_+_138187485_138187521	0.118704	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr10_+_99263224_99263240	0.114649	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020118.4|Dusp6|ENSMUSG00000019960.7|dual specificity phosphatase 6
mm10_v2_chr2_+_71389239_71389278	0.113048	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000028408.2|Hat1|ENSMUSG00000027018.5|histone aminotransferase 1
mm10_v2_chr9_-_79977782_79977809	0.112952	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093811.4|Filip1|ENSMUSG00000034898.9|filamin A interacting protein 1
mm10_v2_chr9_+_102506072_102506138	0.112268	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039390.4|Ky|ENSMUSG00000035606.7|kyphoscoliosis peptidase
mm10_v2_chr10_+_73821857_73821883	0.111984	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177128.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000064562.7|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000129404.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105426.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131321.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000126920.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000147189.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105424.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000092420.6|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000105429.3|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000131724.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152655.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000151116.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000155701.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000152819.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000125517.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000124046.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000149977.2|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000146682.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15 	ENSMUST00000177107.1|Pcdh15|ENSMUSG00000052613.10|protocadherin 15
mm10_v2_chr4_-_58206596_58206616	0.109535	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042850.8|Svep1|ENSMUSG00000028369.9|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm10_v2_chr5_-_122988533_122988705	0.108264	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr11_-_97700327_97700497	0.107878	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr9_+_17030045_17030045	0.107866	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164523.2|Gm5611|ENSMUSG00000090602.2|predicted gene 5611
mm10_v2_chr17_+_17402672_17402771	0.105419	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr4_-_58499398_58499409	0.104839	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr13_-_106847267_106847267	0.103702	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057427.4|Lrrc70|ENSMUSG00000078933.1|leucine rich repeat containing 70
mm10_v2_chr13_+_55445301_55445374	0.100209	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001115.8|Grk6|ENSMUSG00000074886.4|G protein-coupled receptor kinase 6 	ENSMUST00000099482.3|Grk6|ENSMUSG00000074886.4|G protein-coupled receptor kinase 6
mm10_v2_chr2_+_78051155_78051181	0.100137	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000145972.1|4930440I19Rik|ENSMUSG00000085431.1|RIKEN cDNA 4930440I19 gene
mm10_v2_chr2_+_78051220_78051228	0.0981699	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144728.1|4930440I19Rik|ENSMUSG00000085431.1|RIKEN cDNA 4930440I19 gene
mm10_v2_chr16_-_95586585_95586595	0.09757	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000077773.6|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm10_v2_chr2_-_72813665_72813717	0.0934956	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136807.1|6430710C18Rik|ENSMUSG00000085427.1|RIKEN cDNA 6430710C18 gene 	ENSMUST00000148327.1|6430710C18Rik|ENSMUSG00000085427.1|RIKEN cDNA 6430710C18 gene
mm10_v2_chr7_-_44986313_44986492	0.0901859	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000045325.6|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000085387.4|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000107840.1|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000107843.3|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1 	ENSMUST00000107842.3|Prmt1|ENSMUSG00000052429.11|protein arginine N-methyltransferase 1
mm10_v2_chr6_+_15196949_15197102	0.0870698	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000151301.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000131414.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000140557.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115469.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr5_-_137531952_137531984	0.0863987	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140139.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr15_+_21111452_21111452	0.0854426	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr19_-_5560570_5560582	0.0845315	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025861.1|Ovol1|ENSMUSG00000024922.1|OVO homolog-like 1 (Drosophila)
mm10_v2_chr18_-_61707583_61707658	0.0845098	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025472.1|Pcyox1l|ENSMUSG00000024579.2|prenylcysteine oxidase 1 like
mm10_v2_chr7_+_101896817_101896961	0.0835334	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr6_+_87428986_87429002	0.0833938	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032125.5|Bmp10|ENSMUSG00000030046.5|bone morphogenetic protein 10
mm10_v2_chr10_+_102158858_102158889	0.0793022	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr7_+_25681158_25681158	0.0791047	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr18_+_44104407_44104481	0.0790621	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081271.5|Spink12|ENSMUSG00000061144.5|serine peptidase inhibitor, Kazal type 11
mm10_v2_chr1_-_158356258_158356313	0.0783753	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr16_-_97170707_97170759	0.0724359	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr7_-_102210120_102210157	0.0721778	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070165.5|Nup98|ENSMUSG00000063550.7|nucleoporin 98
mm10_v2_chr1_-_126738167_126738230	0.0717325	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160693.1|Nckap5|ENSMUSG00000049690.9|NCK-associated protein 5
mm10_v2_chr4_+_21848039_21848077	0.0710209	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098238.2|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18 	ENSMUST00000108229.1|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18
mm10_v2_chr2_+_153938218_153938223	0.0705813	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109757.1|Bpifb4|ENSMUSG00000074665.4|BPI fold containing family B, member 4
mm10_v2_chr18_+_37819543_37819570	0.0691285	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055935.5|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr7_-_81493725_81493783	0.0644327	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119121.1|Ap3b2|ENSMUSG00000062444.8|adaptor-related protein complex 3, beta 2 subunit
mm10_v2_chr1_+_132298606_132298631	0.0636438	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chr16_-_29544852_29544869	0.0628878	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039090.8|Atp13a4|ENSMUSG00000038094.9|ATPase type 13A4
mm10_v2_chr3_-_59220150_59220259	0.0605043	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr1_+_137928100_137928170	0.0595113	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054333.2|A130050O07Rik|ENSMUSG00000051480.2|RIKEN cDNA A130050O07 gene
mm10_v2_chr4_+_19280850_19280907	0.0588642	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102999.1|Cngb3|ENSMUSG00000056494.7|cyclic nucleotide gated channel beta 3
mm10_v2_chr15_+_92597104_92597121	0.0585983	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035399.8|Pdzrn4|ENSMUSG00000036218.9|PDZ domain containing RING finger 4
mm10_v2_chr12_+_72441933_72441970	0.0568824	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr7_-_116198487_116198561	0.0548516	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181981.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7
mm10_v2_chr13_+_42680565_42680623	0.0528122	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128646.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr8_+_54954728_54954820	0.0523619	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr4_+_19818722_19818743	0.0519226	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035890.7|Slc7a13|ENSMUSG00000041052.8|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm10_v2_chr3_-_141982224_141982264	0.0513005	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr7_-_28547109_28547254	0.0511815	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057974.3|Nccrp1|ENSMUSG00000047586.3|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
mm10_v2_chr8_+_107031218_107031229	0.0503128	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr12_+_72441852_72441866	0.0498301	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr12_+_38780284_38780349	0.04621	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162563.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000161164.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160996.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr18_+_57468478_57468541	0.0457079	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chrX_-_157415286_157415318	0.0447322	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079945.4|Phex|ENSMUSG00000057457.5|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets) 	ENSMUST00000138396.1|Phex|ENSMUSG00000057457.5|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm10_v2_chr4_+_62583568_62583601	0.0446678	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098031.3|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr15_+_81744848_81744848	0.0443885	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr6_-_57535422_57535447	0.0443198	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr10_+_33083476_33083567	0.043199	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095762.4|Trdn|ENSMUSG00000019787.8|triadin
mm10_v2_chr17_-_90088343_90088373	0.04287	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173917.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr2_-_33086366_33086447	0.0422162	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr12_+_38783455_38783482	0.0417699	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161980.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160701.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chrX_-_50942710_50942758	0.040805	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000060650.5|Frmd7|ENSMUSG00000036131.6|FERM domain containing 7
mm10_v2_chr3_+_90600203_90600219	0.0405463	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001047.7|S100a3|ENSMUSG00000001021.8|S100 calcium binding protein A3
mm10_v2_chr5_+_13398688_13398726	0.0386317	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125629.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr1_-_78968079_78968079	0.0369136	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049117.5|Gm5830|ENSMUSG00000072978.2|predicted pseudogene 5830
mm10_v2_chr11_-_26210553_26210585	0.0304943	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101447.3|5730522E02Rik|ENSMUSG00000073101.3|RIKEN cDNA 5730522E02 gene
mm10_v2_chr3_-_94412883_94412890	0.0299167	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181305.1|1700040D17Rik|ENSMUSG00000097515.1|RIKEN cDNA 1700040D17 gene
mm10_v2_chr7_-_5014645_5014697	0.0288264	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr16_-_4880284_4880315	0.0281	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chr3_-_37232565_37232637	0.0277982	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161015.1|Il21|ENSMUSG00000027718.2|interleukin 21 	ENSMUST00000029273.1|Il21|ENSMUSG00000027718.2|interleukin 21
mm10_v2_chr7_+_131542867_131542867	0.0273462	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046093.5|Hmx3|ENSMUSG00000040148.5|H6 homeobox 3
mm10_v2_chr8_+_25720054_25720099	0.0267129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr7_+_29071597_29071613	0.0258053	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180926.1|Gm26604|ENSMUSG00000097079.1|predicted gene, 26604
mm10_v2_chr13_-_64497792_64497792	0.025689	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180282.1|1190003K10Rik|ENSMUSG00000096537.1|RIKEN cDNA 1190003K10 gene
mm10_v2_chr18_+_82914632_82914664	0.025547	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000071233.6|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr12_+_38783503_38783527	0.0252845	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr14_-_79771305_79771318	0.0250517	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr1_+_10993452_10993478	0.0230025	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027056.5|Prex2|ENSMUSG00000048960.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm10_v2_chr3_-_72967854_72967869	0.022283	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167334.1|Sis|ENSMUSG00000027790.8|sucrase isomaltase (alpha-glucosidase)
mm10_v2_chr4_-_97584612_97584643	0.0198573	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107068.2|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr3_-_88410295_88410351	0.0195405	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056370.7|Pmf1|ENSMUSG00000028066.10|polyamine-modulated factor 1
mm10_v2_chr4_-_126968124_126968154	0.0171862	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr4_+_154964117_154964147	0.0152821	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
mm10_v2_chr4_-_155056784_155056827	0.0140729	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000131173.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr3_+_96629919_96629955	0.0139672	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000048915.6|Rbm8a|ENSMUSG00000038374.6|RNA binding motif protein 8a
mm10_v2_chr11_-_77188968_77188968	0.0114155	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108400.1|Efcab5|ENSMUSG00000050944.8|EF-hand calcium binding domain 5
mm10_v2_chr4_+_80834298_80834313	0.0107415	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102831.1|Tyrp1|ENSMUSG00000005994.8|tyrosinase-related protein 1
mm10_v2_chr3_+_55461758_55461961	0.00893047	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070418.4|Dclk1|ENSMUSG00000027797.9|doublecortin-like kinase 1
mm10_v2_chr18_+_44071390_44071402	0.0083825	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068473.2|Spink6|ENSMUSG00000055095.2|serine peptidase inhibitor, Kazal type 6
mm10_v2_chr7_+_101896340_101896431	0.00834969	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr7_+_123123870_123123901	0.0071117	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr7_-_142899985_142900014	0.00664024	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000000219.3|Th|ENSMUSG00000000214.4|tyrosine hydroxylase
mm10_v2_chr5_+_14025305_14025327	0.00642087	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073957.6|Sema3e|ENSMUSG00000063531.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm10_v2_chr5_+_87925579_87925621	0.00639612	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001667.6|Csn3|ENSMUSG00000001622.9|casein kappa 	ENSMUST00000113267.1|Csn3|ENSMUSG00000001622.9|casein kappa
mm10_v2_chr3_+_93468751_93468756	0.00596174	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029516.2|Tchhl1|ENSMUSG00000027908.2|trichohyalin-like 1
mm10_v2_chr13_-_36117269_36117357	0.00450066	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000053265.6|Lyrm4|ENSMUSG00000046573.6|LYR motif containing 4
mm10_v2_chr4_+_114821722_114821722	0.00382039	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137570.1|Gm12830|ENSMUSG00000055198.3|predicted gene 12830
mm10_v2_chr6_-_23650206_23650271	0.00345764	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115354.1|Rnf133|ENSMUSG00000051956.4|ring finger protein 133
mm10_v2_chr8_-_109251698_109251728	0.00337575	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr2_-_33718789_33718899	0.00295527	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000130532.1|9430024E24Rik|ENSMUSG00000085463.1|RIKEN cDNA 9430024E24 gene
mm10_v2_chr2_+_71528657_71528683	0.000548931	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000126400.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
