mm10_v2_chr2_+_67748212_67748212	1.5642	Hoxd9	ENSMUST00000180887.1|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr17_-_78684262_78684352	1.39915	Hoxd9	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr5_-_87092546_87092563	1.07341	Hoxd9	ENSMUST00000132667.1|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36 	ENSMUST00000145617.1|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36 	ENSMUST00000094649.4|Ugt2b36|ENSMUSG00000070704.4|UDP glucuronosyltransferase 2 family, polypeptide B36
mm10_v2_chr1_-_162898665_162898728	0.968822	Hoxd9	ENSMUST00000111510.1|Fmo2|ENSMUSG00000040170.7|flavin containing monooxygenase 2 	ENSMUST00000045902.6|Fmo2|ENSMUSG00000040170.7|flavin containing monooxygenase 2
mm10_v2_chr1_-_97761538_97761609	0.936505	Hoxd9	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr19_+_23723279_23723279	0.910988	Hoxd9	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr13_-_74376566_74376566	0.8965	Hoxd9	ENSMUST00000091481.2|Zfp72|ENSMUSG00000069184.2|zinc finger protein 72
mm10_v2_chr14_-_36919314_36919352	0.863444	Hoxd9	ENSMUST00000182797.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr7_+_66365905_66365905	0.862506	Hoxd9	ENSMUST00000107486.1|Gm10974|ENSMUSG00000078677.1|predicted gene 10974
mm10_v2_chr3_+_35754121_35754135	0.804933	Hoxd9	ENSMUST00000108186.1|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B 	ENSMUST00000029257.8|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B
mm10_v2_chr1_+_180111339_180111339	0.801118	Hoxd9	ENSMUST00000145181.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr19_-_56548013_56548046	0.77283	Hoxd9	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr1_-_139781236_139781239	0.767181	Hoxd9	ENSMUST00000027612.8|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111989.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111986.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788
mm10_v2_chr19_-_29753600_29753600	0.764344	Hoxd9	ENSMUST00000175764.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chr1_-_140183404_140183415	0.708788	Hoxd9	ENSMUST00000066859.6|Cfh|ENSMUSG00000026365.9|complement component factor h 	ENSMUST00000111976.2|Cfh|ENSMUSG00000026365.9|complement component factor h
mm10_v2_chr17_+_75435886_75435937	0.7018	Hoxd9	ENSMUST00000164192.1|Rasgrp3|ENSMUSG00000071042.5|RAS, guanyl releasing protein 3
mm10_v2_chr12_+_8012359_8012419	0.670934	Hoxd9	ENSMUST00000171239.1|Apob|ENSMUSG00000020609.8|apolipoprotein B
mm10_v2_chr1_-_175491130_175491130	0.648291	Hoxd9	ENSMUST00000027812.5|Rgs7|ENSMUSG00000026527.8|regulator of G protein signaling 7
mm10_v2_chr6_-_98342728_98342754	0.634034	Hoxd9	ENSMUST00000164491.1|Gm765|ENSMUSG00000090667.1|predicted gene 765
mm10_v2_chr10_-_19014549_19014589	0.623101	Hoxd9	ENSMUST00000146388.1|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr5_-_62765618_62765656	0.609759	Hoxd9	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr5_-_69590783_69590803	0.576999	Hoxd9	ENSMUST00000173927.1|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr16_-_45693658_45693743	0.536057	Hoxd9	ENSMUST00000114562.2|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7 	ENSMUST00000036617.7|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7
mm10_v2_chr1_+_167598450_167598480	0.535918	Hoxd9	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chrX_-_10216918_10216921	0.529271	Hoxd9	ENSMUST00000072393.2|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000044598.6|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000073392.4|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115533.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115532.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr7_-_14562171_14562171	0.525528	Hoxd9	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chrX_+_114474312_114474353	0.519428	Hoxd9	ENSMUST00000113371.1|Klhl4|ENSMUSG00000025597.7|kelch-like 4 	ENSMUST00000040504.5|Klhl4|ENSMUSG00000025597.7|kelch-like 4
mm10_v2_chr2_+_14174513_14174546	0.506883	Hoxd9	ENSMUST00000077517.7|Tmem236|ENSMUSG00000061531.7|transmembrane protein 236
mm10_v2_chr9_-_18385981_18386068	0.504896	Hoxd9	ENSMUST00000166825.1|Naalad2|ENSMUSG00000043943.8|N-acetylated alpha-linked acidic dipeptidase 2
mm10_v2_chr5_-_87424201_87424205	0.498368	Hoxd9	ENSMUST00000072818.5|Ugt2b38|ENSMUSG00000061906.5|UDP glucuronosyltransferase 2 family, polypeptide B38
mm10_v2_chr3_+_32436376_32436376	0.49737	Hoxd9	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr11_+_29373618_29373777	0.493124	Hoxd9	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chrX_+_82948861_82948915	0.490881	Hoxd9	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr13_+_93304940_93305278	0.483483	Hoxd9	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr19_-_57197496_57197536	0.480214	Hoxd9	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr7_+_90380646_90380646	0.477464	Hoxd9	ENSMUST00000098310.2|Sytl2|ENSMUSG00000030616.8|synaptotagmin-like 2
mm10_v2_chr19_+_39992424_39992424	0.47324	Hoxd9	ENSMUST00000049178.2|Cyp2c37|ENSMUSG00000042248.4|cytochrome P450, family 2. subfamily c, polypeptide 37
mm10_v2_chr5_-_62766153_62766246	0.454595	Hoxd9	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr18_-_37644185_37644209	0.454462	Hoxd9	ENSMUST00000066272.4|Taf7|ENSMUSG00000051316.7|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr12_+_59129757_59129818	0.452424	Hoxd9	ENSMUST00000069430.8|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000177370.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr3_+_138415484_138415510	0.449371	Hoxd9	ENSMUST00000161312.1|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide 	ENSMUST00000013458.8|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide
mm10_v2_chr1_-_138175238_138175266	0.449138	Hoxd9	ENSMUST00000182536.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C
mm10_v2_chr19_-_57197435_57197460	0.444875	Hoxd9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_57197377_57197417	0.443218	Hoxd9	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr4_+_35152056_35152056	0.442629	Hoxd9	ENSMUST00000058595.6|Ifnk|ENSMUSG00000042993.6|interferon kappa
mm10_v2_chr5_-_43235352_43235352	0.430109	Hoxd9	ENSMUST00000140650.2|Gm7854|ENSMUSG00000085720.2|predicted gene 7854
mm10_v2_chr3_+_129836729_129836747	0.427866	Hoxd9	ENSMUST00000077918.5|Cfi|ENSMUSG00000058952.8|complement component factor i
mm10_v2_chr8_-_68121527_68121637	0.42081	Hoxd9	ENSMUST00000178529.1|Gm21807|ENSMUSG00000095306.1|predicted gene, 21807
mm10_v2_chr18_+_32067729_32067811	0.410203	Hoxd9	ENSMUST00000025243.3|Iws1|ENSMUSG00000024384.3|IWS1 homolog (S. cerevisiae)
mm10_v2_chr12_+_77238093_77238122	0.403575	Hoxd9	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr18_+_37400845_37400886	0.395398	Hoxd9	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr8_+_71887264_71887264	0.394339	Hoxd9	ENSMUST00000034259.7|Zfp709|ENSMUSG00000056019.6|zinc finger protein 709
mm10_v2_chr2_-_45117349_45117395	0.389764	Hoxd9	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr15_-_65014904_65014904	0.387227	Hoxd9	ENSMUST00000110100.2|Gm21961|ENSMUSG00000079024.2|predicted gene, 21961
mm10_v2_chr1_+_167598384_167598411	0.386348	Hoxd9	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr18_+_80046854_80046904	0.379819	Hoxd9	ENSMUST00000070219.7|Pard6g|ENSMUSG00000056214.8|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm10_v2_chr11_+_49280150_49280150	0.378788	Hoxd9	ENSMUST00000078932.1|Olfr1393|ENSMUSG00000059864.1|olfactory receptor 1393
mm10_v2_chrX_+_85048309_85048413	0.378509	Hoxd9	ENSMUST00000113991.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy 	ENSMUST00000113992.2|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr7_+_30565410_30565432	0.375945	Hoxd9	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr14_-_100149764_100149764	0.368867	Hoxd9	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr15_-_58364148_58364148	0.36587	Hoxd9	ENSMUST00000068515.7|Anxa13|ENSMUSG00000055114.7|annexin A13
mm10_v2_chr19_-_40073731_40073811	0.365319	Hoxd9	ENSMUST00000048959.3|Cyp2c54|ENSMUSG00000067225.1|cytochrome P450, family 2, subfamily c, polypeptide 54
mm10_v2_chr19_+_39510844_39510862	0.36029	Hoxd9	ENSMUST00000025968.4|Cyp2c39|ENSMUSG00000025003.6|cytochrome P450, family 2, subfamily c, polypeptide 39
mm10_v2_chr1_+_194619815_194619833	0.359572	Hoxd9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr1_-_138175283_138175311	0.358671	Hoxd9	ENSMUST00000182755.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000183262.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000027645.7|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000112036.2|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C 	ENSMUST00000182283.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C
mm10_v2_chr3_-_75270073_75270085	0.358233	Hoxd9	ENSMUST00000039047.4|Serpini2|ENSMUSG00000034139.4|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm10_v2_chr13_+_49544443_49544533	0.357681	Hoxd9	ENSMUST00000177948.1|Aspn|ENSMUSG00000021388.7|asporin 	ENSMUST00000021820.6|Aspn|ENSMUSG00000021388.7|asporin
mm10_v2_chr3_-_49757257_49757316	0.351917	Hoxd9	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr9_-_51328898_51328923	0.351736	Hoxd9	ENSMUST00000039959.4|1810046K07Rik|ENSMUSG00000036027.5|RIKEN cDNA 1810046K07 gene
mm10_v2_chr19_-_56548122_56548222	0.350198	Hoxd9	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr16_-_65562686_65562769	0.340654	Hoxd9	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr12_+_59129720_59129755	0.338371	Hoxd9	ENSMUST00000175912.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000176892.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr1_-_59161594_59161636	0.331342	Hoxd9	ENSMUST00000078874.7|Mpp4|ENSMUSG00000079550.3|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 	ENSMUST00000066374.7|Mpp4|ENSMUSG00000079550.3|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
mm10_v2_chr8_-_41016295_41016321	0.326787	Hoxd9	ENSMUST00000131965.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr1_-_138175126_138175198	0.319886	Hoxd9	ENSMUST00000183301.1|Ptprc|ENSMUSG00000026395.10|protein tyrosine phosphatase, receptor type, C
mm10_v2_chr9_-_21989427_21989456	0.317133	Hoxd9	ENSMUST00000045726.6|Rgl3|ENSMUSG00000040146.8|ral guanine nucleotide dissociation stimulator-like 3
mm10_v2_chr2_-_84425258_84425411	0.292143	Hoxd9	ENSMUST00000074262.2|Calcrl|ENSMUSG00000059588.7|calcitonin receptor-like
mm10_v2_chr6_+_11925869_11925941	0.291413	Hoxd9	ENSMUST00000115510.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000115511.2|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000090632.4|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr2_-_175131864_175131864	0.282055	Hoxd9	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr17_-_35910032_35910076	0.278744	Hoxd9	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr17_+_31433054_31433071	0.278082	Hoxd9	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr3_-_65958236_65958252	0.270982	Hoxd9	ENSMUST00000029416.7|Ccnl1|ENSMUSG00000027829.9|cyclin L1
mm10_v2_chr16_+_44820728_44820728	0.269637	Hoxd9	ENSMUST00000114626.3|Cd200r4|ENSMUSG00000062082.10|CD200 receptor 4
mm10_v2_chr13_+_58281183_58281196	0.264319	Hoxd9	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr1_-_128102412_128102485	0.263878	Hoxd9	ENSMUST00000112538.1|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3 	ENSMUST00000086614.5|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr6_+_30512283_30512288	0.255898	Hoxd9	ENSMUST00000031798.7|Ssmem1|ENSMUSG00000029784.7|serine-rich single-pass membrane protein 1
mm10_v2_chr2_-_116064721_116064749	0.25257	Hoxd9	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr3_-_102964124_102964137	0.241892	Hoxd9	ENSMUST00000058899.8|Nr1h5|ENSMUSG00000048938.8|nuclear receptor subfamily 1, group H, member 5
mm10_v2_chr17_-_45474839_45474938	0.240401	Hoxd9	ENSMUST00000024731.8|Spats1|ENSMUSG00000023935.9|spermatogenesis associated, serine-rich 1
mm10_v2_chr8_+_66386292_66386308	0.239255	Hoxd9	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr2_+_91526756_91526763	0.23157	Hoxd9	ENSMUST00000111338.3|Ckap5|ENSMUSG00000040549.10|cytoskeleton associated protein 5
mm10_v2_chr5_-_77408034_77408051	0.230425	Hoxd9	ENSMUST00000163898.1|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7 	ENSMUST00000046746.6|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7
mm10_v2_chr3_-_144819494_144819494	0.229832	Hoxd9	ENSMUST00000029929.7|Clca2|ENSMUSG00000028262.9|chloride channel calcium activated 2
mm10_v2_chr15_-_37459327_37459380	0.22821	Hoxd9	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr7_+_105404568_105404568	0.227209	Hoxd9	ENSMUST00000033187.4|Cnga4|ENSMUSG00000030897.4|cyclic nucleotide gated channel alpha 4
mm10_v2_chr1_+_139501692_139501726	0.225701	Hoxd9	ENSMUST00000027615.5|F13b|ENSMUSG00000026368.5|coagulation factor XIII, beta subunit
mm10_v2_chr5_-_86373413_86373428	0.225592	Hoxd9	ENSMUST00000031175.5|Tmprss11d|ENSMUSG00000061259.5|transmembrane protease, serine 11d
mm10_v2_chr4_+_30664587_30664599	0.225546	Hoxd9	ENSMUST00000128925.1|4930556G01Rik|ENSMUSG00000085522.1|RIKEN cDNA 4930556G01 gene
mm10_v2_chr12_+_38783503_38783527	0.211688	Hoxd9	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr16_-_50330987_50331017	0.198516	Hoxd9	ENSMUST00000114488.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr1_+_183388981_183388981	0.196235	Hoxd9	ENSMUST00000097043.5|Taf1a|ENSMUSG00000072258.5|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
mm10_v2_chr5_+_8179636_8179636	0.191881	Hoxd9	ENSMUST00000178345.1|Gm21759|ENSMUSG00000094226.1|predicted gene, 21759
mm10_v2_chr11_+_110968016_110968042	0.182578	Hoxd9	ENSMUST00000106636.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENSMUST00000180023.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16
mm10_v2_chr1_-_168432270_168432347	0.182124	Hoxd9	ENSMUST00000072863.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr1_-_172027251_172027268	0.175833	Hoxd9	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chrM_+_11734_11757	0.171806	Hoxd9	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr7_+_127800604_127800696	0.169627	Hoxd9	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr9_-_96437434_96437434	0.169019	Hoxd9	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr18_+_37355271_37355271	0.166355	Hoxd9	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr14_-_118923070_118923167	0.163809	Hoxd9	ENSMUST00000047208.5|Dzip1|ENSMUSG00000042156.9|DAZ interacting protein 1
mm10_v2_chr7_-_34313531_34313568	0.162969	Hoxd9	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr1_-_24612700_24612700	0.159163	Hoxd9	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chr3_-_104777483_104777547	0.157967	Hoxd9	ENSMUST00000139783.1|Fam19a3|ENSMUSG00000055865.8|family with sequence similarity 19, member A3
mm10_v2_chr2_-_37647199_37647285	0.155291	Hoxd9	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr14_-_75754475_75754563	0.148325	Hoxd9	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr2_+_69790968_69790973	0.146015	Hoxd9	ENSMUST00000180290.1|Phospho2|ENSMUSG00000027088.4|phosphatase, orphan 2
mm10_v2_chr7_-_29906524_29906572	0.13727	Hoxd9	ENSMUST00000159920.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27 	ENSMUST00000162592.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr1_-_37536232_37536236	0.13637	Hoxd9	ENSMUST00000042161.8|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr7_+_45621805_45621825	0.131793	Hoxd9	ENSMUST00000033100.4|Izumo1|ENSMUSG00000064158.4|izumo sperm-egg fusion 1
mm10_v2_chr14_+_52844465_52844554	0.129338	Hoxd9	ENSMUST00000181360.1|Trav12d-1|ENSMUSG00000095689.4|T cell receptor alpha variable 12D-1 	ENSMUST00000183652.1|Trav12d-1|ENSMUSG00000095689.4|T cell receptor alpha variable 12D-1
mm10_v2_chr3_-_66296807_66296837	0.127819	Hoxd9	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chrX_+_57212110_57212143	0.119998	Hoxd9	ENSMUST00000033466.1|Cd40lg|ENSMUSG00000031132.1|CD40 ligand
mm10_v2_chr2_+_11172080_11172140	0.119296	Hoxd9	ENSMUST00000114853.1|Prkcq|ENSMUSG00000026778.7|protein kinase C, theta
mm10_v2_chr3_-_81924463_81924463	0.118764	Hoxd9	ENSMUST00000069880.2|Gm9989|ENSMUSG00000056023.2|predicted gene 9989
mm10_v2_chr18_-_78206408_78206440	0.115622	Hoxd9	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr1_+_88200601_88200631	0.1143	Hoxd9	ENSMUST00000049289.8|Ugt1a2|ENSMUSG00000090171.1|UDP glucuronosyltransferase 1 family, polypeptide A2
mm10_v2_chr2_-_172454742_172454742	0.108329	Hoxd9	ENSMUST00000161334.1|Gcnt7|ENSMUSG00000074569.4|glucosaminyl (N-acetyl) transferase family member 7
mm10_v2_chr6_+_48537560_48537622	0.108269	Hoxd9	ENSMUST00000040361.5|Atp6v0e2|ENSMUSG00000039347.5|ATPase, H+ transporting, lysosomal V0 subunit E2
mm10_v2_chr6_-_87533219_87533264	0.104239	Hoxd9	ENSMUST00000113637.2|Arhgap25|ENSMUSG00000030047.8|Rho GTPase activating protein 25 	ENSMUST00000071024.6|Arhgap25|ENSMUSG00000030047.8|Rho GTPase activating protein 25
mm10_v2_chr17_+_17402672_17402771	0.0924011	Hoxd9	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chrX_-_111697069_111697127	0.0918625	Hoxd9	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr13_-_105271039_105271039	0.0911379	Hoxd9	ENSMUST00000069686.6|Rnf180|ENSMUSG00000021720.10|ring finger protein 180
mm10_v2_chr13_+_4771649_4771649	0.0893011	Hoxd9	ENSMUST00000065956.3|Gm5444|ENSMUSG00000053499.3|predicted gene 5444
mm10_v2_chr13_-_66852017_66852017	0.0829951	Hoxd9	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr10_-_127030789_127030812	0.0796675	Hoxd9	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr13_-_21612004_21612004	0.0780198	Hoxd9	ENSMUST00000051874.2|Olfr1362|ENSMUSG00000051258.2|olfactory receptor 1362
mm10_v2_chr4_-_94650092_94650127	0.0749933	Hoxd9	ENSMUST00000107101.1|Lrrc19|ENSMUSG00000049799.7|leucine rich repeat containing 19
mm10_v2_chr1_-_163289214_163289235	0.0736757	Hoxd9	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr6_-_36811361_36811361	0.0714616	Hoxd9	ENSMUST00000101534.1|Ptn|ENSMUSG00000029838.8|pleiotrophin
mm10_v2_chr2_+_43748802_43748875	0.0702749	Hoxd9	ENSMUST00000112824.1|Arhgap15|ENSMUSG00000049744.9|Rho GTPase activating protein 15 	ENSMUST00000055776.7|Arhgap15|ENSMUSG00000049744.9|Rho GTPase activating protein 15
mm10_v2_chr2_-_63184170_63184195	0.067429	Hoxd9	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr7_+_121707189_121707189	0.0672918	Hoxd9	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr14_+_53640701_53640701	0.0665151	Hoxd9	ENSMUST00000179267.2|Trav14-2|ENSMUSG00000095711.4|T cell receptor alpha variable 14-2
mm10_v2_chr1_-_130452416_130452530	0.0636857	Hoxd9	ENSMUST00000140400.1|Cd55|ENSMUSG00000026399.6|CD55 antigen
mm10_v2_chr5_-_92253159_92253159	0.0619812	Hoxd9	ENSMUST00000031359.8|Ppef2|ENSMUSG00000029410.8|protein phosphatase, EF hand calcium-binding domain 2
mm10_v2_chr16_+_44943737_44943752	0.0616045	Hoxd9	ENSMUST00000114622.3|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3 	ENSMUST00000166731.1|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3
mm10_v2_chr9_+_7347374_7347410	0.0608392	Hoxd9	ENSMUST00000065079.5|Mmp12|ENSMUSG00000049723.8|matrix metallopeptidase 12 	ENSMUST00000005950.5|Mmp12|ENSMUSG00000049723.8|matrix metallopeptidase 12
mm10_v2_chr4_-_43771009_43771009	0.0593763	Hoxd9	ENSMUST00000053931.1|Olfr159|ENSMUSG00000044801.1|olfactory receptor 159
mm10_v2_chr19_+_46689902_46689943	0.0588434	Hoxd9	ENSMUST00000074912.7|2010012O05Rik|ENSMUSG00000062376.7|RIKEN cDNA 2010012O05 gene
mm10_v2_chr5_+_87925579_87925621	0.0587019	Hoxd9	ENSMUST00000001667.6|Csn3|ENSMUSG00000001622.9|casein kappa 	ENSMUST00000113267.1|Csn3|ENSMUSG00000001622.9|casein kappa
mm10_v2_chr7_-_103840427_103840427	0.0586595	Hoxd9	ENSMUST00000106866.1|Hbb-bh2|ENSMUSG00000078621.1|hemoglobin beta, bh2
mm10_v2_chr2_+_125136692_125136769	0.0577504	Hoxd9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr2_+_155751117_155751284	0.0548519	Hoxd9	ENSMUST00000029140.5|Procr|ENSMUSG00000027611.6|protein C receptor, endothelial 	ENSMUST00000132608.1|Procr|ENSMUSG00000027611.6|protein C receptor, endothelial
mm10_v2_chr1_-_139377041_139377078	0.0536208	Hoxd9	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr6_-_42597372_42597384	0.0519462	Hoxd9	ENSMUST00000069023.3|Fam115e|ENSMUSG00000018656.5|family with sequence similarity 115, member E
mm10_v2_chr9_+_32393963_32393985	0.0477123	Hoxd9	ENSMUST00000172015.1|Kcnj1|ENSMUSG00000041248.8|potassium inwardly-rectifying channel, subfamily J, member 1
mm10_v2_chr16_+_92292380_92292397	0.0424358	Hoxd9	ENSMUST00000047383.3|Kcne2|ENSMUSG00000039672.6|potassium voltage-gated channel, Isk-related subfamily, gene 2
mm10_v2_chr5_-_66514815_66514837	0.0416042	Hoxd9	ENSMUST00000161879.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159357.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2
mm10_v2_chr11_+_85171096_85171104	0.0410481	Hoxd9	ENSMUST00000018623.3|1700125H20Rik|ENSMUSG00000018479.6|RIKEN cDNA 1700125H20 gene
mm10_v2_chr7_+_100176663_100176680	0.0324789	Hoxd9	ENSMUST00000178946.1|Kcne3|ENSMUSG00000035165.7|potassium voltage-gated channel, Isk-related subfamily, gene 3
mm10_v2_chr13_-_96435952_96435967	0.0323642	Hoxd9	ENSMUST00000181761.1|Ankdd1b|ENSMUSG00000047117.6|ankyrin repeat and death domain containing 1B
mm10_v2_chr6_+_145934113_145934136	0.0312366	Hoxd9	ENSMUST00000032383.7|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr9_-_106096776_106096791	0.0287999	Hoxd9	ENSMUST00000121963.1|Col6a4|ENSMUSG00000032572.6|collagen, type VI, alpha 4
mm10_v2_chr12_+_88011848_88011848	0.0249721	Hoxd9	ENSMUST00000180285.1|Gm2075|ENSMUSG00000096049.1|predicted gene 2075
mm10_v2_chr9_+_78051938_78051958	0.0218574	Hoxd9	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr13_-_100246323_100246323	0.021851	Hoxd9	ENSMUST00000049789.2|Naip5|ENSMUSG00000071203.6|NLR family, apoptosis inhibitory protein 5
mm10_v2_chrX_-_134111852_134111873	0.0140775	Hoxd9	ENSMUST00000033610.6|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chr5_-_92348871_92348889	0.0138646	Hoxd9	ENSMUST00000038816.6|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10 	ENSMUST00000118006.1|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10
mm10_v2_chr3_+_19989151_19989164	0.0126703	Hoxd9	ENSMUST00000173779.1|Cp|ENSMUSG00000003617.10|ceruloplasmin
mm10_v2_chr2_+_78051155_78051181	0.0106568	Hoxd9	ENSMUST00000145972.1|4930440I19Rik|ENSMUSG00000085431.1|RIKEN cDNA 4930440I19 gene
mm10_v2_chr1_+_49244616_49244616	0.00153839	Hoxd9	ENSMUST00000056879.8|C230029F24Rik|ENSMUSG00000051616.8|RIKEN cDNA C230029F24 gene
mm10_v2_chr2_-_140671462_140671476	0.00101872	Hoxd9	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr2_-_121380940_121380947	0.000350741	Hoxd9	ENSMUST00000038389.8|Strc|ENSMUSG00000033498.8|stereocilin
mm10_v2_chr5_-_113310697_113310727	9.1676e-05	Hoxd9	ENSMUST00000154248.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
