mm10_v2_chr8_+_45069137_45069137	2.54792	Hoxa9_Hoxb9	ENSMUST00000067984.7|Mtnr1a|ENSMUSG00000054764.8|melatonin receptor 1A
mm10_v2_chr18_+_20247340_20247340	1.94218	Hoxa9_Hoxb9	ENSMUST00000054128.6|Dsg1c|ENSMUSG00000034774.6|desmoglein 1 gamma
mm10_v2_chr17_-_43502773_43502812	1.93318	Hoxa9_Hoxb9	ENSMUST00000024707.8|Mep1a|ENSMUSG00000023914.10|meprin 1 alpha 	ENSMUST00000117137.1|Mep1a|ENSMUSG00000023914.10|meprin 1 alpha
mm10_v2_chr1_+_88211956_88211985	1.57912	Hoxa9_Hoxb9	ENSMUST00000073049.6|Ugt1a1|ENSMUSG00000089960.1|UDP glucuronosyltransferase 1 family, polypeptide A1
mm10_v2_chr8_+_45069374_45069374	1.50952	Hoxa9_Hoxb9	ENSMUST00000130141.1|Mtnr1a|ENSMUSG00000054764.8|melatonin receptor 1A
mm10_v2_chr2_+_58755177_58755195	1.37157	Hoxa9_Hoxb9	ENSMUST00000102755.3|Upp2|ENSMUSG00000026839.10|uridine phosphorylase 2
mm10_v2_chr2_+_58754910_58754942	1.26466	Hoxa9_Hoxb9	ENSMUST00000059102.6|Upp2|ENSMUSG00000026839.10|uridine phosphorylase 2
mm10_v2_chr3_+_138313279_138313293	0.944479	Hoxa9_Hoxb9	ENSMUST00000013455.6|Adh6a|ENSMUSG00000053054.7|alcohol dehydrogenase 6A (class V) 	ENSMUST00000106247.1|Adh6a|ENSMUSG00000053054.7|alcohol dehydrogenase 6A (class V)
mm10_v2_chr11_+_67078293_67078307	0.771916	Hoxa9_Hoxb9	ENSMUST00000108689.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000165221.1|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic 	ENSMUST00000007301.7|Myh3|ENSMUSG00000020908.8|myosin, heavy polypeptide 3, skeletal muscle, embryonic
mm10_v2_chr6_+_49822710_49822727	0.752265	Hoxa9_Hoxb9	ENSMUST00000031843.6|Npy|ENSMUSG00000029819.6|neuropeptide Y
mm10_v2_chr7_-_141434532_141434605	0.748371	Hoxa9_Hoxb9	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr18_+_20310738_20310811	0.738727	Hoxa9_Hoxb9	ENSMUST00000077146.3|Dsg1a|ENSMUSG00000069441.3|desmoglein 1 alpha
mm10_v2_chr16_+_10812915_10812915	0.73163	Hoxa9_Hoxb9	ENSMUST00000115822.1|Gm11172|ENSMUSG00000079740.1|predicted gene 11172
mm10_v2_chr2_+_163506808_163506860	0.711829	Hoxa9_Hoxb9	ENSMUST00000143911.1|Hnf4a|ENSMUSG00000017950.10|hepatic nuclear factor 4, alpha
mm10_v2_chr1_-_66945361_66945416	0.70894	Hoxa9_Hoxb9	ENSMUST00000160100.1|Myl1|ENSMUSG00000061816.9|myosin, light polypeptide 1
mm10_v2_chr7_-_142661858_142661880	0.706534	Hoxa9_Hoxb9	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr18_+_20376723_20376740	0.661373	Hoxa9_Hoxb9	ENSMUST00000076737.6|Dsg1b|ENSMUSG00000061928.6|desmoglein 1 beta
mm10_v2_chr4_+_42668043_42668043	0.642645	Hoxa9_Hoxb9	ENSMUST00000178177.1|Gm9969|ENSMUSG00000094731.1|predicted gene 9969
mm10_v2_chr6_+_115422040_115422067	0.615061	Hoxa9_Hoxb9	ENSMUST00000000450.3|Pparg|ENSMUSG00000000440.6|peroxisome proliferator activated receptor gamma
mm10_v2_chr13_-_23914998_23915011	0.612922	Hoxa9_Hoxb9	ENSMUST00000021769.8|Slc17a4|ENSMUSG00000021336.10|solute carrier family 17 (sodium phosphate), member 4 	ENSMUST00000110407.2|Slc17a4|ENSMUSG00000021336.10|solute carrier family 17 (sodium phosphate), member 4
mm10_v2_chr17_-_91092715_91092822	0.609017	Hoxa9_Hoxb9	ENSMUST00000160800.2|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000159778.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000160844.3|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr7_-_45870928_45870986	0.57823	Hoxa9_Hoxb9	ENSMUST00000146672.1|Grin2d|ENSMUSG00000002771.10|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm10_v2_chr4_+_42170845_42170845	0.568765	Hoxa9_Hoxb9	ENSMUST00000179965.1|1700045I11Rik|ENSMUSG00000096609.1|RIKEN cDNA 1700045I11 gene
mm10_v2_chr14_-_70323783_70323814	0.545064	Hoxa9_Hoxb9	ENSMUST00000151011.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14
mm10_v2_chr17_-_34862473_34862535	0.534995	Hoxa9_Hoxb9	ENSMUST00000025229.4|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000176203.2|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000128767.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr3_+_118562129_118562156	0.508309	Hoxa9_Hoxb9	ENSMUST00000039177.7|Dpyd|ENSMUSG00000033308.10|dihydropyrimidine dehydrogenase
mm10_v2_chr3_+_138415484_138415510	0.505281	Hoxa9_Hoxb9	ENSMUST00000161312.1|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide 	ENSMUST00000013458.8|Adh4|ENSMUSG00000037797.8|alcohol dehydrogenase 4 (class II), pi polypeptide
mm10_v2_chr15_+_25773985_25774042	0.496872	Hoxa9_Hoxb9	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr3_-_113574242_113574272	0.491732	Hoxa9_Hoxb9	ENSMUST00000142505.2|Amy1|ENSMUSG00000074264.6|amylase 1, salivary
mm10_v2_chr17_-_34862122_34862238	0.487511	Hoxa9_Hoxb9	ENSMUST00000154526.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr5_+_145204523_145204668	0.485497	Hoxa9_Hoxb9	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr8_-_79248537_79248583	0.4842	Hoxa9_Hoxb9	ENSMUST00000034109.4|1700011L22Rik|ENSMUSG00000031682.4|RIKEN cDNA 1700011L22 gene
mm10_v2_chr15_-_41869703_41869727	0.475036	Hoxa9_Hoxb9	ENSMUST00000054742.5|Abra|ENSMUSG00000042895.5|actin-binding Rho activating protein
mm10_v2_chr8_+_4134733_4134733	0.467246	Hoxa9_Hoxb9	ENSMUST00000130372.1|Cd209g|ENSMUSG00000079168.3|CD209g antigen
mm10_v2_chr5_+_137787769_137787807	0.454147	Hoxa9_Hoxb9	ENSMUST00000035852.7|Zcwpw1|ENSMUSG00000037108.7|zinc finger, CW type with PWWP domain 1
mm10_v2_chr4_-_49549523_49549546	0.450838	Hoxa9_Hoxb9	ENSMUST00000029987.9|Aldob|ENSMUSG00000028307.9|aldolase B, fructose-bisphosphate
mm10_v2_chr11_+_67171095_67171220	0.449006	Hoxa9_Hoxb9	ENSMUST00000018641.7|Myh2|ENSMUSG00000033196.11|myosin, heavy polypeptide 2, skeletal muscle, adult
mm10_v2_chr1_+_194619815_194619833	0.447785	Hoxa9_Hoxb9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr18_+_37400845_37400886	0.445435	Hoxa9_Hoxb9	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr11_+_67171027_67171071	0.440258	Hoxa9_Hoxb9	ENSMUST00000170159.1|Myh2|ENSMUSG00000033196.11|myosin, heavy polypeptide 2, skeletal muscle, adult
mm10_v2_chr17_-_15826521_15826590	0.434075	Hoxa9_Hoxb9	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr9_+_43310763_43310806	0.423053	Hoxa9_Hoxb9	ENSMUST00000034511.5|Trim29|ENSMUSG00000032013.5|tripartite motif-containing 29
mm10_v2_chr3_+_98280427_98280444	0.416022	Hoxa9_Hoxb9	ENSMUST00000090746.2|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 	ENSMUST00000120541.1|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm10_v2_chr13_+_93674403_93674452	0.398962	Hoxa9_Hoxb9	ENSMUST00000048001.6|Dmgdh|ENSMUSG00000042102.6|dimethylglycine dehydrogenase precursor
mm10_v2_chr15_+_81936911_81936982	0.372612	Hoxa9_Hoxb9	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr7_+_70388305_70388305	0.37173	Hoxa9_Hoxb9	ENSMUST00000080024.5|B130024G19Rik|ENSMUSG00000062383.5|RIKEN cDNA B130024G19 gene
mm10_v2_chr2_-_80447625_80447625	0.340799	Hoxa9_Hoxb9	ENSMUST00000028389.3|Frzb|ENSMUSG00000027004.3|frizzled-related protein
mm10_v2_chr14_-_47189406_47189419	0.340103	Hoxa9_Hoxb9	ENSMUST00000089959.6|Gch1|ENSMUSG00000037580.9|GTP cyclohydrolase 1
mm10_v2_chr8_-_4105764_4105835	0.339402	Hoxa9_Hoxb9	ENSMUST00000138439.1|Cd209f|ENSMUSG00000051906.8|CD209f antigen 	ENSMUST00000145007.1|Cd209f|ENSMUSG00000051906.8|CD209f antigen
mm10_v2_chr19_-_56548013_56548046	0.336991	Hoxa9_Hoxb9	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr18_+_12599894_12599926	0.331208	Hoxa9_Hoxb9	ENSMUST00000169401.1|Ttc39c|ENSMUSG00000024424.8|tetratricopeptide repeat domain 39C
mm10_v2_chr6_-_139501907_139501918	0.329081	Hoxa9_Hoxb9	ENSMUST00000170650.1|Rergl|ENSMUSG00000092164.1|RERG/RAS-like
mm10_v2_chr2_-_67433181_67433181	0.323027	Hoxa9_Hoxb9	ENSMUST00000180773.1|Gm26727|ENSMUSG00000097112.1|predicted gene, 26727
mm10_v2_chr9_+_7571396_7571463	0.315973	Hoxa9_Hoxb9	ENSMUST00000120900.1|Mmp27|ENSMUSG00000070323.5|matrix metallopeptidase 27 	ENSMUST00000093896.3|Mmp27|ENSMUSG00000070323.5|matrix metallopeptidase 27 	ENSMUST00000151853.1|Mmp27|ENSMUSG00000070323.5|matrix metallopeptidase 27 	ENSMUST00000152878.1|Mmp27|ENSMUSG00000070323.5|matrix metallopeptidase 27
mm10_v2_chr2_+_80315461_80315511	0.315632	Hoxa9_Hoxb9	ENSMUST00000028392.7|Dnajc10|ENSMUSG00000027006.7|DnaJ (Hsp40) homolog, subfamily C, member 10
mm10_v2_chr11_-_99244058_99244136	0.308193	Hoxa9_Hoxb9	ENSMUST00000103132.3|Krt222|ENSMUSG00000035849.8|keratin 222 	ENSMUST00000038214.6|Krt222|ENSMUSG00000035849.8|keratin 222
mm10_v2_chr9_+_45055166_45055195	0.303736	Hoxa9_Hoxb9	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr6_-_24168083_24168097	0.299051	Hoxa9_Hoxb9	ENSMUST00000031713.8|Slc13a1|ENSMUSG00000029700.11|solute carrier family 13 (sodium/sulfate symporters), member 1
mm10_v2_chr14_+_55971428_55971428	0.296406	Hoxa9_Hoxb9	ENSMUST00000089555.2|Cma2|ENSMUSG00000068289.5|chymase 2, mast cell
mm10_v2_chr1_-_153844130_153844158	0.293032	Hoxa9_Hoxb9	ENSMUST00000124558.3|Rgsl1|ENSMUSG00000042641.12|regulator of G-protein signaling like 1
mm10_v2_chr7_+_28277706_28277770	0.292026	Hoxa9_Hoxb9	ENSMUST00000094651.2|Eid2b|ENSMUSG00000070705.2|EP300 interacting inhibitor of differentiation 2B
mm10_v2_chr14_-_54282925_54282925	0.290016	Hoxa9_Hoxb9	ENSMUST00000059996.4|Olfr49|ENSMUSG00000048153.4|olfactory receptor 49
mm10_v2_chr15_-_101573883_101573913	0.281892	Hoxa9_Hoxb9	ENSMUST00000042957.5|Krt75|ENSMUSG00000022986.5|keratin 75
mm10_v2_chrX_+_139563316_139563339	0.281864	Hoxa9_Hoxb9	ENSMUST00000113027.1|Rnf128|ENSMUSG00000031438.5|ring finger protein 128
mm10_v2_chr10_+_3872667_3872788	0.276786	Hoxa9_Hoxb9	ENSMUST00000136671.1|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENSMUST00000042438.6|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm10_v2_chr10_+_111506286_111506286	0.273783	Hoxa9_Hoxb9	ENSMUST00000164773.1|Phlda1|ENSMUSG00000020205.7|pleckstrin homology-like domain, family A, member 1
mm10_v2_chr14_-_57058030_57058030	0.271973	Hoxa9_Hoxb9	ENSMUST00000061614.6|Gja3|ENSMUSG00000048582.6|gap junction protein, alpha 3
mm10_v2_chr5_-_139814231_139814283	0.270875	Hoxa9_Hoxb9	ENSMUST00000044002.4|Tmem184a|ENSMUSG00000036687.7|transmembrane protein 184a
mm10_v2_chr3_+_108653931_108653964	0.254819	Hoxa9_Hoxb9	ENSMUST00000029483.8|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1 	ENSMUST00000124384.1|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1
mm10_v2_chr12_-_113361232_113361232	0.248553	Hoxa9_Hoxb9	ENSMUST00000103423.1|Ighg3|ENSMUSG00000076615.2|Immunoglobulin heavy constant gamma 3
mm10_v2_chr3_+_138217814_138217828	0.248135	Hoxa9_Hoxb9	ENSMUST00000090171.5|Adh7|ENSMUSG00000055301.7|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
mm10_v2_chr3_+_108591279_108591414	0.246489	Hoxa9_Hoxb9	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr6_+_79818031_79818031	0.233167	Hoxa9_Hoxb9	ENSMUST00000179797.1|Gm20594|ENSMUSG00000096887.1|predicted gene, 20594
mm10_v2_chr17_-_45572495_45572555	0.23221	Hoxa9_Hoxb9	ENSMUST00000130406.1|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1
mm10_v2_chr1_-_75232093_75232093	0.220431	Hoxa9_Hoxb9	ENSMUST00000180101.1|A630095N17Rik|ENSMUSG00000096094.1|RIKEN cDNA A630095N17 gene
mm10_v2_chr2_-_33087169_33087253	0.217397	Hoxa9_Hoxb9	ENSMUST00000102810.3|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr6_-_143947061_143947088	0.216896	Hoxa9_Hoxb9	ENSMUST00000124233.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr2_-_17390953_17391042	0.208869	Hoxa9_Hoxb9	ENSMUST00000177966.1|Nebl|ENSMUSG00000053702.10|nebulette
mm10_v2_chr7_-_101864093_101864156	0.200523	Hoxa9_Hoxb9	ENSMUST00000106981.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr19_-_57197435_57197460	0.194937	Hoxa9_Hoxb9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr18_+_37655891_37655915	0.189923	Hoxa9_Hoxb9	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr15_+_11000716_11000736	0.180242	Hoxa9_Hoxb9	ENSMUST00000117100.1|Slc45a2|ENSMUSG00000022243.8|solute carrier family 45, member 2 	ENSMUST00000022851.7|Slc45a2|ENSMUSG00000022243.8|solute carrier family 45, member 2
mm10_v2_chr9_+_92309362_92309386	0.179214	Hoxa9_Hoxb9	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr11_-_109298066_109298079	0.177005	Hoxa9_Hoxb9	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr7_-_101870683_101870707	0.172336	Hoxa9_Hoxb9	ENSMUST00000106986.2|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000106985.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr19_-_57197377_57197417	0.170074	Hoxa9_Hoxb9	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr11_-_100050542_100050557	0.168364	Hoxa9_Hoxb9	ENSMUST00000007318.1|Krt31|ENSMUSG00000048981.1|keratin 31
mm10_v2_chr18_-_31317043_31317133	0.167439	Hoxa9_Hoxb9	ENSMUST00000139924.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2 	ENSMUST00000153060.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2
mm10_v2_chr7_-_135528645_135528661	0.16328	Hoxa9_Hoxb9	ENSMUST00000053716.7|Clrn3|ENSMUSG00000050866.7|clarin 3
mm10_v2_chrX_-_145348932_145349089	0.161012	Hoxa9_Hoxb9	ENSMUST00000040084.9|Lhfpl1|ENSMUSG00000041700.9|lipoma HMGIC fusion partner-like 1 	ENSMUST00000123443.1|Lhfpl1|ENSMUSG00000041700.9|lipoma HMGIC fusion partner-like 1
mm10_v2_chr12_+_112620030_112620056	0.159449	Hoxa9_Hoxb9	ENSMUST00000180015.1|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1 	ENSMUST00000021726.6|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1
mm10_v2_chr1_-_163289214_163289235	0.159114	Hoxa9_Hoxb9	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr19_+_33822908_33822908	0.152955	Hoxa9_Hoxb9	ENSMUST00000042061.6|Gm5519|ENSMUSG00000037603.6|predicted pseudogene 5519
mm10_v2_chr3_+_138065052_138065078	0.149995	Hoxa9_Hoxb9	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr2_+_147364989_147365011	0.147224	Hoxa9_Hoxb9	ENSMUST00000109968.2|Pax1|ENSMUSG00000037034.9|paired box gene 1
mm10_v2_chr6_-_124965207_124965243	0.147183	Hoxa9_Hoxb9	ENSMUST00000148485.1|Cops7a|ENSMUSG00000030127.9|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm10_v2_chr3_+_57425314_57425452	0.146034	Hoxa9_Hoxb9	ENSMUST00000029377.7|Tm4sf4|ENSMUSG00000027801.7|transmembrane 4 superfamily member 4
mm10_v2_chr3_+_66985947_66985986	0.144546	Hoxa9_Hoxb9	ENSMUST00000161726.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000160504.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr11_-_100105626_100105645	0.144465	Hoxa9_Hoxb9	ENSMUST00000107416.2|Krt36|ENSMUSG00000020916.8|keratin 36
mm10_v2_chrY_-_9132561_9132561	0.143908	Hoxa9_Hoxb9	ENSMUST00000171947.2|Gm21292|ENSMUSG00000091077.2|predicted gene, 21292
mm10_v2_chr3_+_83026147_83026162	0.139344	Hoxa9_Hoxb9	ENSMUST00000166581.1|Fga|ENSMUSG00000028001.10|fibrinogen alpha chain 	ENSMUST00000029630.9|Fga|ENSMUSG00000028001.10|fibrinogen alpha chain
mm10_v2_chr11_-_83530505_83530533	0.139142	Hoxa9_Hoxb9	ENSMUST00000035938.2|Ccl5|ENSMUSG00000035042.2|chemokine (C-C motif) ligand 5
mm10_v2_chr8_+_27042555_27042589	0.138995	Hoxa9_Hoxb9	ENSMUST00000033875.8|Prosc|ENSMUSG00000031485.8|proline synthetase co-transcribed 	ENSMUST00000098851.4|Prosc|ENSMUSG00000031485.8|proline synthetase co-transcribed
mm10_v2_chr3_+_66985647_66985678	0.136159	Hoxa9_Hoxb9	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr17_-_29007925_29007962	0.133092	Hoxa9_Hoxb9	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr5_-_107869153_107869175	0.130777	Hoxa9_Hoxb9	ENSMUST00000128723.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5 	ENSMUST00000124034.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5
mm10_v2_chr4_+_108459389_108459451	0.126318	Hoxa9_Hoxb9	ENSMUST00000106673.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11 	ENSMUST00000043368.5|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr7_-_101870711_101870756	0.125215	Hoxa9_Hoxb9	ENSMUST00000151706.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr10_+_17796256_17796339	0.120689	Hoxa9_Hoxb9	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr3_+_132634725_132634725	0.119742	Hoxa9_Hoxb9	ENSMUST00000163241.1|Gm5549|ENSMUSG00000091721.1|predicted gene 5549
mm10_v2_chr13_-_91388079_91388090	0.118918	Hoxa9_Hoxb9	ENSMUST00000181054.1|A830009L08Rik|ENSMUSG00000097182.1|RIKEN cDNA A830009L08 gene
mm10_v2_chr7_-_45062393_45062436	0.118018	Hoxa9_Hoxb9	ENSMUST00000129101.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr9_+_121366958_121367042	0.11695	Hoxa9_Hoxb9	ENSMUST00000045903.6|Trak1|ENSMUSG00000032536.9|trafficking protein, kinesin binding 1
mm10_v2_chr16_+_91225550_91225579	0.116873	Hoxa9_Hoxb9	ENSMUST00000035608.8|Olig2|ENSMUSG00000039830.8|oligodendrocyte transcription factor 2
mm10_v2_chr5_-_77095225_77095275	0.114057	Hoxa9_Hoxb9	ENSMUST00000120827.2|Hopx|ENSMUSG00000059325.8|HOP homeobox 	ENSMUST00000113453.2|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr2_-_27463994_27464116	0.112859	Hoxa9_Hoxb9	ENSMUST00000164296.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr7_+_44896077_44896106	0.112439	Hoxa9_Hoxb9	ENSMUST00000071207.7|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000166849.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168712.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila) 	ENSMUST00000168389.1|Fuz|ENSMUSG00000011658.8|fuzzy homolog (Drosophila)
mm10_v2_chr3_+_66985680_66985692	0.1112	Hoxa9_Hoxb9	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr19_-_57197496_57197536	0.109682	Hoxa9_Hoxb9	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr4_+_115737754_115737810	0.109165	Hoxa9_Hoxb9	ENSMUST00000106522.2|Efcab14|ENSMUSG00000034210.7|EF-hand calcium binding domain 14
mm10_v2_chr4_+_44012638_44012660	0.109086	Hoxa9_Hoxb9	ENSMUST00000107847.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000170241.1|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr17_+_38145393_38145393	0.106791	Hoxa9_Hoxb9	ENSMUST00000173610.1|Olfr133|ENSMUSG00000063240.4|olfactory receptor 133
mm10_v2_chr16_-_52454074_52454074	0.106374	Hoxa9_Hoxb9	ENSMUST00000023312.7|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr3_+_138374121_138374163	0.104449	Hoxa9_Hoxb9	ENSMUST00000171054.1|Adh6-ps1|ENSMUSG00000090306.1|alcohol dehydrogenase 6 (class V), pseudogene 1
mm10_v2_chr8_+_9977707_9977725	0.102374	Hoxa9_Hoxb9	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr12_+_105159690_105159690	0.101553	Hoxa9_Hoxb9	ENSMUST00000085043.5|Tcl1b1|ENSMUSG00000066359.5|T cell leukemia/lymphoma 1B, 1
mm10_v2_chr4_+_44012661_44012694	0.0991733	Hoxa9_Hoxb9	ENSMUST00000107849.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107851.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca) 	ENSMUST00000107845.3|Clta|ENSMUSG00000028478.12|clathrin, light polypeptide (Lca)
mm10_v2_chr2_-_31845925_31846005	0.0970547	Hoxa9_Hoxb9	ENSMUST00000028188.7|Fibcd1|ENSMUSG00000026841.7|fibrinogen C domain containing 1
mm10_v2_chr1_-_97761538_97761609	0.0899264	Hoxa9_Hoxb9	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr5_-_26089291_26089291	0.0846251	Hoxa9_Hoxb9	ENSMUST00000094946.4|Gm10471|ENSMUSG00000073116.4|predicted gene 10471
mm10_v2_chr6_-_143947092_143947111	0.0841406	Hoxa9_Hoxb9	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr7_-_101870778_101870788	0.0826331	Hoxa9_Hoxb9	ENSMUST00000001882.4|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000126204.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000155311.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000106983.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult) 	ENSMUST00000123630.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chrY_-_3303466_3303466	0.0800391	Hoxa9_Hoxb9	ENSMUST00000179508.1|Gm21677|ENSMUSG00000093918.1|predicted gene, 21677
mm10_v2_chr15_+_81936753_81936839	0.0781145	Hoxa9_Hoxb9	ENSMUST00000038757.7|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr5_+_26257691_26257691	0.0762851	Hoxa9_Hoxb9	ENSMUST00000074148.6|Gm7361|ENSMUSG00000059645.6|predicted gene 7361
mm10_v2_chr5_-_26105362_26105362	0.0723335	Hoxa9_Hoxb9	ENSMUST00000063524.2|5031410I06Rik|ENSMUSG00000051940.2|RIKEN cDNA 5031410I06 gene
mm10_v2_chr10_-_63927434_63927434	0.0693767	Hoxa9_Hoxb9	ENSMUST00000079279.3|Gm10118|ENSMUSG00000062561.3|predicted gene 10118
mm10_v2_chr7_+_30231884_30231948	0.0686209	Hoxa9_Hoxb9	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr6_-_97148908_97148930	0.068541	Hoxa9_Hoxb9	ENSMUST00000142116.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase 	ENSMUST00000113387.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
mm10_v2_chr7_-_22229484_22229484	0.0678307	Hoxa9_Hoxb9	ENSMUST00000167253.1|Gm8453|ENSMUSG00000094149.1|predicted gene 8453
mm10_v2_chrY_+_3774805_3774805	0.0671985	Hoxa9_Hoxb9	ENSMUST00000180202.1|Gm3376|ENSMUSG00000096520.1|predicted gene 3376
mm10_v2_chrY_-_3407067_3407067	0.0671985	Hoxa9_Hoxb9	ENSMUST00000180310.1|Gm21708|ENSMUSG00000095948.1|predicted gene, 21708
mm10_v2_chr2_-_177267036_177267036	0.0663288	Hoxa9_Hoxb9	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr1_-_30719961_30719961	0.0642699	Hoxa9_Hoxb9	ENSMUST00000065469.1|Gm9898|ENSMUSG00000053185.1|predicted gene 9898
mm10_v2_chr3_+_14480692_14480773	0.0626587	Hoxa9_Hoxb9	ENSMUST00000037321.7|Slc7a12|ENSMUSG00000039710.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 	ENSMUST00000120484.1|Slc7a12|ENSMUSG00000039710.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 	ENSMUST00000120801.1|Slc7a12|ENSMUSG00000039710.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
mm10_v2_chr11_-_109298090_109298118	0.0597933	Hoxa9_Hoxb9	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr3_+_66985700_66985740	0.0592904	Hoxa9_Hoxb9	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr8_+_112570043_112570060	0.0590028	Hoxa9_Hoxb9	ENSMUST00000034225.6|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4 	ENSMUST00000118171.1|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4
mm10_v2_chr4_+_115737738_115737752	0.058154	Hoxa9_Hoxb9	ENSMUST00000106525.2|Efcab14|ENSMUSG00000034210.7|EF-hand calcium binding domain 14
mm10_v2_chr6_+_104492790_104492965	0.0573003	Hoxa9_Hoxb9	ENSMUST00000161446.1|Cntn6|ENSMUSG00000030092.8|contactin 6 	ENSMUST00000161070.1|Cntn6|ENSMUSG00000030092.8|contactin 6 	ENSMUST00000089215.5|Cntn6|ENSMUSG00000030092.8|contactin 6
mm10_v2_chr2_+_32395896_32395896	0.0564601	Hoxa9_Hoxb9	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr1_-_171240055_171240116	0.0556143	Hoxa9_Hoxb9	ENSMUST00000131286.1|Ndufs2|ENSMUSG00000013593.6|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm10_v2_chr5_-_26004798_26004798	0.0546033	Hoxa9_Hoxb9	ENSMUST00000168875.1|Gm1979|ENSMUSG00000091049.2|predicted gene 1979
mm10_v2_chr7_-_127449109_127449166	0.0543929	Hoxa9_Hoxb9	ENSMUST00000053392.4|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chrX_-_134541847_134541900	0.0529991	Hoxa9_Hoxb9	ENSMUST00000054213.4|Timm8a1|ENSMUSG00000048007.4|translocase of inner mitochondrial membrane 8A1
mm10_v2_chr19_-_56548122_56548222	0.0525636	Hoxa9_Hoxb9	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr7_-_22692317_22692317	0.0525484	Hoxa9_Hoxb9	ENSMUST00000178871.1|Gm8693|ENSMUSG00000095081.1|predicted gene 8693
mm10_v2_chr7_-_23251682_23251682	0.0525484	Hoxa9_Hoxb9	ENSMUST00000164045.1|Gm4220|ENSMUSG00000096073.1|predicted gene 4220
mm10_v2_chr7_-_20912347_20912347	0.0525484	Hoxa9_Hoxb9	ENSMUST00000172322.1|Vmn1r118|ENSMUSG00000094589.1|vomeronasal 1 receptor 118
mm10_v2_chr14_+_20674311_20674371	0.0517357	Hoxa9_Hoxb9	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr5_-_26039506_26039506	0.0514799	Hoxa9_Hoxb9	ENSMUST00000079447.2|Speer4a|ENSMUSG00000073119.2|spermatogenesis associated glutamate (E)-rich protein 4a
mm10_v2_chr8_-_33843562_33843671	0.0470335	Hoxa9_Hoxb9	ENSMUST00000183062.1|Rbpms|ENSMUSG00000031586.10|RNA binding protein gene with multiple splicing
mm10_v2_chrY_+_55733188_55733188	0.0469402	Hoxa9_Hoxb9	ENSMUST00000177834.1|Gm21858|ENSMUSG00000095135.1|predicted gene, 21858
mm10_v2_chr2_+_28205648_28205672	0.0467841	Hoxa9_Hoxb9	ENSMUST00000102879.3|Olfm1|ENSMUSG00000026833.12|olfactomedin 1 	ENSMUST00000028177.4|Olfm1|ENSMUSG00000026833.12|olfactomedin 1
mm10_v2_chr7_-_21546090_21546090	0.0459663	Hoxa9_Hoxb9	ENSMUST00000179390.1|Gm4172|ENSMUSG00000093941.1|predicted gene 4172
mm10_v2_chrY_-_29683370_29683370	0.0433886	Hoxa9_Hoxb9	ENSMUST00000180373.1|Gm21679|ENSMUSG00000094869.1|predicted gene, 21679
mm10_v2_chr5_-_26121421_26121421	0.0429708	Hoxa9_Hoxb9	ENSMUST00000088236.3|Gm10220|ENSMUSG00000067698.3|predicted gene 10220
mm10_v2_chr7_-_127448993_127449077	0.0422109	Hoxa9_Hoxb9	ENSMUST00000106299.1|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr5_-_62766153_62766246	0.0414977	Hoxa9_Hoxb9	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chrX_+_71981522_71981522	0.0395453	Hoxa9_Hoxb9	ENSMUST00000114569.1|Fate1|ENSMUSG00000053593.4|fetal and adult testis expressed 1
mm10_v2_chr11_+_96194299_96194316	0.0393939	Hoxa9_Hoxb9	ENSMUST00000062709.3|Hoxb13|ENSMUSG00000049604.3|homeobox B13
mm10_v2_chr2_+_22622183_22622205	0.0337628	Hoxa9_Hoxb9	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr2_-_45112890_45113010	0.0322711	Hoxa9_Hoxb9	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr6_+_147042755_147042797	0.0322403	Hoxa9_Hoxb9	ENSMUST00000036111.7|Mrps35|ENSMUSG00000040112.7|mitochondrial ribosomal protein S35
mm10_v2_chr7_-_20233828_20233828	0.0273837	Hoxa9_Hoxb9	ENSMUST00000168580.1|Gm4498|ENSMUSG00000094757.1|predicted gene 4498
mm10_v2_chr14_-_33978751_33978791	0.027201	Hoxa9_Hoxb9	ENSMUST00000166737.1|Zfp488|ENSMUSG00000044519.8|zinc finger protein 488
mm10_v2_chr10_+_23960494_23960494	0.0271358	Hoxa9_Hoxb9	ENSMUST00000092660.1|Taar4|ENSMUSG00000069707.1|trace amine-associated receptor 4
mm10_v2_chr5_+_35388844_35388882	0.0270684	Hoxa9_Hoxb9	ENSMUST00000087674.3|Hmx1|ENSMUSG00000067438.3|H6 homeobox 1
mm10_v2_chrY_+_2904133_2904133	0.0263103	Hoxa9_Hoxb9	ENSMUST00000166474.2|Gm10352|ENSMUSG00000091987.2|predicted gene 10352
mm10_v2_chrY_-_68293479_68293479	0.0218249	Hoxa9_Hoxb9	ENSMUST00000180329.1|Gm20937|ENSMUSG00000096016.1|predicted gene, 20937
mm10_v2_chr4_-_4793275_4793382	0.0216417	Hoxa9_Hoxb9	ENSMUST00000084949.2|Impad1|ENSMUSG00000066324.2|inositol monophosphatase domain containing 1
mm10_v2_chr4_+_145670685_145670685	0.0208694	Hoxa9_Hoxb9	ENSMUST00000105738.2|Gm13242|ENSMUSG00000058186.7|predicted gene 13242
mm10_v2_chr5_-_32746317_32746411	0.0208525	Hoxa9_Hoxb9	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr10_-_130429612_130429612	0.0203437	Hoxa9_Hoxb9	ENSMUST00000171811.2|Vmn2r85|ENSMUSG00000092048.2|vomeronasal 2, receptor 85
mm10_v2_chr7_-_22028897_22028897	0.0200022	Hoxa9_Hoxb9	ENSMUST00000179206.1|Gm4179|ENSMUSG00000095163.1|predicted gene 4179
mm10_v2_chr11_+_87566653_87566661	0.0198679	Hoxa9_Hoxb9	ENSMUST00000060360.5|Gm11492|ENSMUSG00000090107.1|predicted gene 11492
mm10_v2_chr11_+_115403734_115403777	0.0179874	Hoxa9_Hoxb9	ENSMUST00000153983.1|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000106539.3|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1 	ENSMUST00000103036.4|Ict1|ENSMUSG00000018858.9|immature colon carcinoma transcript 1
mm10_v2_chrY_+_70443305_70443305	0.0179684	Hoxa9_Hoxb9	ENSMUST00000178934.1|Gm20888|ENSMUSG00000094616.1|predicted gene, 20888
mm10_v2_chr11_-_78386558_78386598	0.0177117	Hoxa9_Hoxb9	ENSMUST00000108294.1|Foxn1|ENSMUSG00000002057.4|forkhead box N1
mm10_v2_chr17_-_6621267_6621267	0.0164344	Hoxa9_Hoxb9	ENSMUST00000115772.3|Tmem181c-ps|ENSMUSG00000093880.1|transmembrane protein 181C, pseudogene
mm10_v2_chr3_-_95106907_95106930	0.0158141	Hoxa9_Hoxb9	ENSMUST00000107233.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr2_+_125136692_125136769	0.0157249	Hoxa9_Hoxb9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr18_-_31447383_31447415	0.0152694	Hoxa9_Hoxb9	ENSMUST00000025110.3|Syt4|ENSMUSG00000024261.5|synaptotagmin IV
mm10_v2_chr1_+_139422196_139422383	0.0114795	Hoxa9_Hoxb9	ENSMUST00000039867.7|Zbtb41|ENSMUSG00000033964.7|zinc finger and BTB domain containing 41 homolog
mm10_v2_chr1_+_153891646_153891740	0.0101956	Hoxa9_Hoxb9	ENSMUST00000050660.4|Teddm1|ENSMUSG00000047053.4|transmembrane epididymal protein 1
mm10_v2_chr9_+_75311395_75311395	0.00936565	Hoxa9_Hoxb9	ENSMUST00000076889.6|Gnb5|ENSMUSG00000032192.8|guanine nucleotide binding protein (G protein), beta 5
mm10_v2_chr5_+_63812447_63812538	0.00720784	Hoxa9_Hoxb9	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr5_-_66514815_66514837	0.00684388	Hoxa9_Hoxb9	ENSMUST00000161879.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159357.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2
mm10_v2_chr3_+_90062781_90062836	0.00620409	Hoxa9_Hoxb9	ENSMUST00000029551.2|1700094D03Rik|ENSMUSG00000078667.2|RIKEN cDNA 1700094D03 gene
mm10_v2_chr5_-_26022916_26022916	0.00595456	Hoxa9_Hoxb9	ENSMUST00000072286.6|Gm5862|ENSMUSG00000067700.5|predicted gene 5862
mm10_v2_chr1_+_177729814_177729869	0.00435449	Hoxa9_Hoxb9	ENSMUST00000016106.5|1700016C15Rik|ENSMUSG00000015962.5|RIKEN cDNA 1700016C15 gene
mm10_v2_chr7_+_76411062_76411062	0.0031514	Hoxa9_Hoxb9	ENSMUST00000026854.3|Agbl1|ENSMUSG00000025754.5|ATP/GTP binding protein-like 1 	ENSMUST00000107442.2|Agbl1|ENSMUSG00000025754.5|ATP/GTP binding protein-like 1
mm10_v2_chr17_+_86963077_86963094	0.0030109	Hoxa9_Hoxb9	ENSMUST00000024956.8|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr7_+_106814135_106814179	0.00137801	Hoxa9_Hoxb9	ENSMUST00000075414.1|Olfr701|ENSMUSG00000036744.5|olfactory receptor 701 	ENSMUST00000166880.1|Olfr701|ENSMUSG00000036744.5|olfactory receptor 701
mm10_v2_chr9_-_109626059_109626059	0.00126112	Hoxa9_Hoxb9	ENSMUST00000073962.6|Fbxw24|ENSMUSG00000062275.6|F-box and WD-40 domain protein 24
mm10_v2_chr7_-_20703216_20703216	0.000795399	Hoxa9_Hoxb9	ENSMUST00000179511.1|Vmn1r111|ENSMUSG00000095768.1|vomeronasal 1 receptor 111
