mm10_v2_chr19_+_39287074_39287104	4.53715	Hoxa11_Hoxc12	ENSMUST00000003137.8|Cyp2c29|ENSMUSG00000003053.11|cytochrome P450, family 2, subfamily c, polypeptide 29
mm10_v2_chr4_-_62150810_62150863	1.98953	Hoxa11_Hoxc12	ENSMUST00000077719.3|Mup21|ENSMUSG00000066153.2|major urinary protein 21
mm10_v2_chr3_+_81996922_81996922	1.79085	Hoxa11_Hoxc12	ENSMUST00000029641.3|Asic5|ENSMUSG00000028008.4|acid-sensing (proton-gated) ion channel family member 5
mm10_v2_chr2_+_23068168_23068241	1.34388	Hoxa11_Hoxc12	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr17_+_22361453_22361522	1.3333	Hoxa11_Hoxc12	ENSMUST00000149699.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000088765.2|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000072477.4|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000121315.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758
mm10_v2_chr16_-_16600533_16600576	1.28342	Hoxa11_Hoxc12	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr11_-_30986326_30986372	1.24826	Hoxa11_Hoxc12	ENSMUST00000020553.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2 	ENSMUST00000101394.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2
mm10_v2_chr17_-_21845759_21845759	1.15378	Hoxa11_Hoxc12	ENSMUST00000084141.4|Zfp820|ENSMUSG00000069743.4|zinc finger protein 820
mm10_v2_chr18_-_38209762_38209786	1.09022	Hoxa11_Hoxc12	ENSMUST00000057185.6|Pcdh1|ENSMUSG00000051375.9|protocadherin 1
mm10_v2_chr18_-_10706688_10706771	1.04305	Hoxa11_Hoxc12	ENSMUST00000002549.7|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117726.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117828.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3
mm10_v2_chr16_-_57231434_57231509	1.00441	Hoxa11_Hoxc12	ENSMUST00000023431.6|Tbc1d23|ENSMUSG00000022749.6|TBC1 domain family, member 23
mm10_v2_chr12_+_78226627_78226655	1.00115	Hoxa11_Hoxc12	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr5_-_123666682_123666695	0.953435	Hoxa11_Hoxc12	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr11_-_62457772_62457835	0.912492	Hoxa11_Hoxc12	ENSMUST00000127471.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr19_+_5406815_5406880	0.906888	Hoxa11_Hoxc12	ENSMUST00000174412.1|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene 	ENSMUST00000153017.2|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene
mm10_v2_chr2_-_180824596_180824630	0.890104	Hoxa11_Hoxc12	ENSMUST00000148700.1|Gm14340|ENSMUSG00000074507.6|predicted gene 14340
mm10_v2_chr6_+_149141638_149141663	0.877259	Hoxa11_Hoxc12	ENSMUST00000166416.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111551.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr7_-_135528645_135528661	0.875286	Hoxa11_Hoxc12	ENSMUST00000053716.7|Clrn3|ENSMUSG00000050866.7|clarin 3
mm10_v2_chr2_+_131133497_131133497	0.873632	Hoxa11_Hoxc12	ENSMUST00000110225.1|Gm11037|ENSMUSG00000079039.1|predicted gene 11037
mm10_v2_chr7_-_73537621_73537766	0.857679	Hoxa11_Hoxc12	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr8_-_69373914_69373914	0.816614	Hoxa11_Hoxc12	ENSMUST00000095282.1|Gm10311|ENSMUSG00000071083.1|predicted gene 10311
mm10_v2_chr9_+_3404058_3404098	0.813191	Hoxa11_Hoxc12	ENSMUST00000027027.5|Cwf19l2|ENSMUSG00000025898.5|CWF19-like 2, cell cycle control (S. pombe)
mm10_v2_chr14_+_49172202_49172254	0.797219	Hoxa11_Hoxc12	ENSMUST00000153488.1|Naa30|ENSMUSG00000036282.8|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm10_v2_chr1_-_182409020_182409020	0.788437	Hoxa11_Hoxc12	ENSMUST00000097444.1|Gm10517|ENSMUSG00000073482.1|predicted gene 10517
mm10_v2_chr6_+_149141513_149141619	0.77987	Hoxa11_Hoxc12	ENSMUST00000047531.9|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000179873.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111548.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111547.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000134306.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr8_+_45069374_45069374	0.756905	Hoxa11_Hoxc12	ENSMUST00000130141.1|Mtnr1a|ENSMUSG00000054764.8|melatonin receptor 1A
mm10_v2_chr9_-_50659780_50659801	0.750851	Hoxa11_Hoxc12	ENSMUST00000034567.3|Dlat|ENSMUSG00000000168.3|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm10_v2_chr5_+_119625939_119625966	0.747108	Hoxa11_Hoxc12	ENSMUST00000156235.1|Gm16063|ENSMUSG00000085708.1|predicted gene 16063
mm10_v2_chr1_+_88087802_88087848	0.708332	Hoxa11_Hoxc12	ENSMUST00000113139.1|Ugt1a8|ENSMUSG00000089675.1|UDP glucuronosyltransferase 1 family, polypeptide A8
mm10_v2_chr7_-_120145286_120145292	0.694573	Hoxa11_Hoxc12	ENSMUST00000033207.4|Zp2|ENSMUSG00000030911.6|zona pellucida glycoprotein 2
mm10_v2_chr9_+_37613806_37613858	0.685846	Hoxa11_Hoxc12	ENSMUST00000002007.3|Siae|ENSMUSG00000001942.7|sialic acid acetylesterase
mm10_v2_chr5_+_32611171_32611245	0.681204	Hoxa11_Hoxc12	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr13_+_65512678_65512678	0.679102	Hoxa11_Hoxc12	ENSMUST00000081471.2|Gm10139|ENSMUSG00000063905.2|predicted gene 10139
mm10_v2_chrX_-_165004829_165004829	0.649928	Hoxa11_Hoxc12	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr1_-_136960427_136960494	0.647585	Hoxa11_Hoxc12	ENSMUST00000027649.7|Nr5a2|ENSMUSG00000026398.8|nuclear receptor subfamily 5, group A, member 2
mm10_v2_chr9_+_75441518_75441575	0.63884	Hoxa11_Hoxc12	ENSMUST00000048937.4|Leo1|ENSMUSG00000042487.5|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr18_+_37655891_37655915	0.63847	Hoxa11_Hoxc12	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr1_+_178529113_178529134	0.621343	Hoxa11_Hoxc12	ENSMUST00000161017.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr6_+_29471437_29471497	0.617467	Hoxa11_Hoxc12	ENSMUST00000171317.1|Gm9047|ENSMUSG00000090685.1|predicted gene 9047
mm10_v2_chr1_-_173227229_173227229	0.589493	Hoxa11_Hoxc12	ENSMUST00000049706.5|Fcer1a|ENSMUSG00000005339.5|Fc receptor, IgE, high affinity I, alpha polypeptide
mm10_v2_chr14_+_27622433_27622543	0.585413	Hoxa11_Hoxc12	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chr11_-_72267141_72267222	0.573549	Hoxa11_Hoxc12	ENSMUST00000137701.1|Slc13a5|ENSMUSG00000020805.7|solute carrier family 13 (sodium-dependent citrate transporter), member 5
mm10_v2_chr13_-_12464925_12464949	0.562909	Hoxa11_Hoxc12	ENSMUST00000124888.1|Lgals8|ENSMUSG00000057554.7|lectin, galactose binding, soluble 8
mm10_v2_chr17_+_75465538_75465568	0.558013	Hoxa11_Hoxc12	ENSMUST00000095204.4|Rasgrp3|ENSMUSG00000071042.5|RAS, guanyl releasing protein 3
mm10_v2_chr8_-_69625503_69625559	0.538365	Hoxa11_Hoxc12	ENSMUST00000121886.1|Zfp868|ENSMUSG00000060427.9|zinc finger protein 868
mm10_v2_chr11_-_23895208_23895280	0.537921	Hoxa11_Hoxc12	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr7_-_119895446_119895543	0.521635	Hoxa11_Hoxc12	ENSMUST00000098080.2|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr19_+_4097392_4097415	0.502285	Hoxa11_Hoxc12	ENSMUST00000174514.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2 	ENSMUST00000174149.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2
mm10_v2_chr11_-_115627948_115628122	0.483691	Hoxa11_Hoxc12	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr7_-_141435327_141435397	0.478095	Hoxa11_Hoxc12	ENSMUST00000138865.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr14_-_34503323_34503345	0.466877	Hoxa11_Hoxc12	ENSMUST00000171343.1|Bmpr1a|ENSMUSG00000021796.8|bone morphogenetic protein receptor, type 1A
mm10_v2_chr6_+_91878034_91878089	0.466377	Hoxa11_Hoxc12	ENSMUST00000037783.5|Ccdc174|ENSMUSG00000034083.10|coiled-coil domain containing 174
mm10_v2_chr19_+_29945782_29945799	0.466067	Hoxa11_Hoxc12	ENSMUST00000025724.8|Il33|ENSMUSG00000024810.10|interleukin 33
mm10_v2_chr17_+_8182247_8182247	0.458437	Hoxa11_Hoxc12	ENSMUST00000161898.1|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr3_+_32436376_32436376	0.450633	Hoxa11_Hoxc12	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr3_+_69721985_69722071	0.436885	Hoxa11_Hoxc12	ENSMUST00000029358.8|Nmd3|ENSMUSG00000027787.8|NMD3 homolog (S. cerevisiae)
mm10_v2_chr4_+_136143497_136143497	0.436182	Hoxa11_Hoxc12	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr13_+_98263242_98263302	0.430673	Hoxa11_Hoxc12	ENSMUST00000022164.8|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000150352.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr6_+_108213086_108213123	0.425044	Hoxa11_Hoxc12	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr7_-_141434532_141434605	0.423554	Hoxa11_Hoxc12	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr1_+_88070765_88070800	0.41985	Hoxa11_Hoxc12	ENSMUST00000073772.4|Ugt1a9|ENSMUSG00000090175.1|UDP glucuronosyltransferase 1 family, polypeptide A9
mm10_v2_chr9_-_106247730_106247874	0.404391	Hoxa11_Hoxc12	ENSMUST00000112524.2|Alas1|ENSMUSG00000032786.8|aminolevulinic acid synthase 1 	ENSMUST00000074082.6|Alas1|ENSMUSG00000032786.8|aminolevulinic acid synthase 1
mm10_v2_chr9_-_55919605_55919605	0.398681	Hoxa11_Hoxc12	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr8_+_11840474_11840508	0.379274	Hoxa11_Hoxc12	ENSMUST00000033909.7|Tex29|ENSMUSG00000031512.8|testis expressed 29
mm10_v2_chr13_+_47193942_47194010	0.36866	Hoxa11_Hoxc12	ENSMUST00000110111.2|Rnf144b|ENSMUSG00000038068.8|ring finger protein 144B
mm10_v2_chrX_+_20364481_20364616	0.365771	Hoxa11_Hoxc12	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr2_-_120970706_120970761	0.365016	Hoxa11_Hoxc12	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr11_-_5542177_5542219	0.359218	Hoxa11_Hoxc12	ENSMUST00000020776.4|Ccdc117|ENSMUSG00000020482.4|coiled-coil domain containing 117
mm10_v2_chr3_+_66219909_66219927	0.356699	Hoxa11_Hoxc12	ENSMUST00000029421.5|Ptx3|ENSMUSG00000027832.5|pentraxin related gene
mm10_v2_chr1_-_136131171_136131185	0.34951	Hoxa11_Hoxc12	ENSMUST00000146091.3|Gm15850|ENSMUSG00000086264.3|predicted gene 15850 	ENSMUST00000165464.1|Gm15850|ENSMUSG00000086264.3|predicted gene 15850 	ENSMUST00000166747.1|Gm15850|ENSMUSG00000086264.3|predicted gene 15850 	ENSMUST00000134998.1|Gm15850|ENSMUSG00000086264.3|predicted gene 15850
mm10_v2_chr13_+_98263187_98263221	0.348118	Hoxa11_Hoxc12	ENSMUST00000091356.3|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000123924.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr3_+_132634725_132634725	0.345451	Hoxa11_Hoxc12	ENSMUST00000163241.1|Gm5549|ENSMUSG00000091721.1|predicted gene 5549
mm10_v2_chr1_+_182409162_182409184	0.343593	Hoxa11_Hoxc12	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr7_-_41448641_41448641	0.337857	Hoxa11_Hoxc12	ENSMUST00000165029.1|Vmn2r57|ENSMUSG00000066537.4|vomeronasal 2, receptor 57
mm10_v2_chr8_+_33653238_33653238	0.334601	Hoxa11_Hoxc12	ENSMUST00000033992.8|Gsr|ENSMUSG00000031584.10|glutathione reductase
mm10_v2_chr13_+_98263105_98263177	0.33365	Hoxa11_Hoxc12	ENSMUST00000150916.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr6_+_96115249_96115311	0.327009	Hoxa11_Hoxc12	ENSMUST00000075080.5|Fam19a1|ENSMUSG00000059187.6|family with sequence similarity 19, member A1
mm10_v2_chr11_+_60479915_60479915	0.326461	Hoxa11_Hoxc12	ENSMUST00000126522.1|Myo15|ENSMUSG00000042678.10|myosin XV
mm10_v2_chr11_-_115628125_115628164	0.323982	Hoxa11_Hoxc12	ENSMUST00000155709.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000021089.4|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr4_-_138367966_138368008	0.317262	Hoxa11_Hoxc12	ENSMUST00000030535.3|Cda|ENSMUSG00000028755.3|cytidine deaminase
mm10_v2_chr2_-_26516620_26516663	0.310404	Hoxa11_Hoxc12	ENSMUST00000132820.1|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chr5_-_20951769_20951824	0.30383	Hoxa11_Hoxc12	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr14_+_54883377_54883507	0.301835	Hoxa11_Hoxc12	ENSMUST00000022806.3|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000134077.1|Gm20521|ENSMUSG00000092232.1|predicted gene 20521 	ENSMUST00000172844.1|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000133397.2|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2
mm10_v2_chr16_-_23225334_23225368	0.296107	Hoxa11_Hoxc12	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr7_-_140507318_140507318	0.287656	Hoxa11_Hoxc12	ENSMUST00000064392.6|Olfr536|ENSMUSG00000052508.8|olfactory receptor 536
mm10_v2_chr6_+_40471352_40471526	0.284028	Hoxa11_Hoxc12	ENSMUST00000114779.2|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000031971.6|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000121360.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117411.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117830.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1
mm10_v2_chr16_-_56024628_56024668	0.283001	Hoxa11_Hoxc12	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr11_-_115628260_115628298	0.279369	Hoxa11_Hoxc12	ENSMUST00000178003.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr3_-_142881942_142882017	0.275317	Hoxa11_Hoxc12	ENSMUST00000043812.8|Pkn2|ENSMUSG00000004591.10|protein kinase N2
mm10_v2_chr2_+_166805506_166805605	0.27352	Hoxa11_Hoxc12	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr5_-_38502079_38502101	0.267021	Hoxa11_Hoxc12	ENSMUST00000147664.1|Slc2a9|ENSMUSG00000005107.7|solute carrier family 2 (facilitated glucose transporter), member 9
mm10_v2_chr18_+_69346143_69346203	0.265515	Hoxa11_Hoxc12	ENSMUST00000114980.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr6_-_55681257_55681271	0.259202	Hoxa11_Hoxc12	ENSMUST00000044767.8|Neurod6|ENSMUSG00000037984.8|neurogenic differentiation 6
mm10_v2_chr12_-_20900867_20900867	0.258258	Hoxa11_Hoxc12	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr19_-_7483212_7483229	0.255467	Hoxa11_Hoxc12	ENSMUST00000088169.5|Rtn3|ENSMUSG00000024758.8|reticulon 3
mm10_v2_chr3_-_88458876_88459043	0.251561	Hoxa11_Hoxc12	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr9_+_53771499_53771535	0.25094	Hoxa11_Hoxc12	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr1_+_106980979_106980985	0.24738	Hoxa11_Hoxc12	ENSMUST00000027564.1|Serpinb13|ENSMUSG00000048775.4|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13
mm10_v2_chr18_-_46280820_46280850	0.243511	Hoxa11_Hoxc12	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr12_+_59066908_59066931	0.24201	Hoxa11_Hoxc12	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr1_+_58646608_58646608	0.241827	Hoxa11_Hoxc12	ENSMUST00000081455.4|Gm10068|ENSMUSG00000059647.4|predicted gene 10068
mm10_v2_chr9_-_71168657_71168683	0.240934	Hoxa11_Hoxc12	ENSMUST00000113570.1|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr17_-_13761441_13761601	0.230974	Hoxa11_Hoxc12	ENSMUST00000127032.1|Tcte2|ENSMUSG00000038347.8|t-complex-associated testis expressed 2
mm10_v2_chr13_-_35027077_35027099	0.230596	Hoxa11_Hoxc12	ENSMUST00000170538.1|Eci2|ENSMUSG00000021417.8|enoyl-Coenzyme A delta isomerase 2 	ENSMUST00000163280.1|Eci2|ENSMUSG00000021417.8|enoyl-Coenzyme A delta isomerase 2
mm10_v2_chr13_-_99344652_99344706	0.214965	Hoxa11_Hoxc12	ENSMUST00000022153.6|Ptcd2|ENSMUSG00000021650.6|pentatricopeptide repeat domain 2
mm10_v2_chr3_-_144849301_144849357	0.214132	Hoxa11_Hoxc12	ENSMUST00000159989.1|Clca4|ENSMUSG00000037033.9|chloride channel calcium activated 4
mm10_v2_chr18_+_36744656_36744737	0.208368	Hoxa11_Hoxc12	ENSMUST00000007042.5|Ik|ENSMUSG00000024474.5|IK cytokine
mm10_v2_chr16_+_75592844_75592928	0.206035	Hoxa11_Hoxc12	ENSMUST00000114249.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000046378.7|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000114253.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11
mm10_v2_chr7_-_46795881_46796085	0.20097	Hoxa11_Hoxc12	ENSMUST00000107653.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000107654.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000014562.7|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000152759.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr15_-_100424092_100424173	0.195422	Hoxa11_Hoxc12	ENSMUST00000154676.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr11_-_102697710_102697782	0.194795	Hoxa11_Hoxc12	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr1_+_161395409_161395439	0.194013	Hoxa11_Hoxc12	ENSMUST00000028024.4|Tnfsf4|ENSMUSG00000026700.4|tumor necrosis factor (ligand) superfamily, member 4
mm10_v2_chr6_+_42286709_42286856	0.187733	Hoxa11_Hoxc12	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chrX_+_73064787_73064787	0.186026	Hoxa11_Hoxc12	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr17_+_8283762_8283852	0.184372	Hoxa11_Hoxc12	ENSMUST00000155364.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000046754.8|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000124023.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1
mm10_v2_chr5_-_143138200_143138200	0.183319	Hoxa11_Hoxc12	ENSMUST00000164536.2|Olfr718-ps1|ENSMUSG00000090981.2|olfactory receptor 718, pseudogene 1
mm10_v2_chrX_-_7319291_7319358	0.181335	Hoxa11_Hoxc12	ENSMUST00000128319.1|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr3_-_88459047_88459101	0.178351	Hoxa11_Hoxc12	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr16_-_45408955_45409053	0.172091	Hoxa11_Hoxc12	ENSMUST00000163230.1|Cd200|ENSMUSG00000022661.8|CD200 antigen
mm10_v2_chr6_+_42286676_42286687	0.171697	Hoxa11_Hoxc12	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr10_-_120979327_120979373	0.171274	Hoxa11_Hoxc12	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr3_+_79885930_79886002	0.171126	Hoxa11_Hoxc12	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr11_+_55213783_55213814	0.165873	Hoxa11_Hoxc12	ENSMUST00000108867.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr7_+_126649297_126649344	0.163446	Hoxa11_Hoxc12	ENSMUST00000032956.8|Ccdc101|ENSMUSG00000030714.8|coiled-coil domain containing 101
mm10_v2_chr5_+_3543812_3543853	0.163261	Hoxa11_Hoxc12	ENSMUST00000115527.3|Fam133b|ENSMUSG00000058503.7|family with sequence similarity 133, member B
mm10_v2_chr12_-_23780265_23780265	0.154052	Hoxa11_Hoxc12	ENSMUST00000072014.4|Gm10330|ENSMUSG00000071362.2|predicted gene 10330
mm10_v2_chr13_+_58281183_58281196	0.149328	Hoxa11_Hoxc12	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr3_+_89177463_89177543	0.143486	Hoxa11_Hoxc12	ENSMUST00000029684.8|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000120697.1|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000098941.4|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3
mm10_v2_chr11_-_102407315_102407448	0.136761	Hoxa11_Hoxc12	ENSMUST00000149777.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39 	ENSMUST00000154001.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39
mm10_v2_chr6_-_87809757_87809787	0.131141	Hoxa11_Hoxc12	ENSMUST00000032134.7|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr7_+_140247267_140247314	0.125698	Hoxa11_Hoxc12	ENSMUST00000059882.6|5830411N06Rik|ENSMUSG00000054672.6|RIKEN cDNA 5830411N06 gene
mm10_v2_chr11_+_77216180_77216287	0.124608	Hoxa11_Hoxc12	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr3_+_145576196_145576266	0.123783	Hoxa11_Hoxc12	ENSMUST00000098534.4|Znhit6|ENSMUSG00000074182.4|zinc finger, HIT type 6
mm10_v2_chr7_-_126649556_126649580	0.121845	Hoxa11_Hoxc12	ENSMUST00000084587.1|2510046G10Rik|ENSMUSG00000066175.1|RIKEN cDNA 2510046G10 gene
mm10_v2_chr4_+_39450268_39450314	0.115121	Hoxa11_Hoxc12	ENSMUST00000029955.4|1700009N14Rik|ENSMUSG00000028287.4|RIKEN cDNA 1700009N14 gene
mm10_v2_chr3_+_126597299_126597413	0.114772	Hoxa11_Hoxc12	ENSMUST00000106400.2|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000106401.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta
mm10_v2_chr1_+_72307413_72307450	0.11079	Hoxa11_Hoxc12	ENSMUST00000027379.8|Xrcc5|ENSMUSG00000026187.8|X-ray repair complementing defective repair in Chinese hamster cells 5
mm10_v2_chr9_+_40873981_40874127	0.107092	Hoxa11_Hoxc12	ENSMUST00000067375.3|Bsx|ENSMUSG00000054360.3|brain specific homeobox
mm10_v2_chr2_-_147085445_147085483	0.106953	Hoxa11_Hoxc12	ENSMUST00000067020.2|Nkx2-4|ENSMUSG00000054160.2|NK2 homeobox 4
mm10_v2_chr16_-_74411776_74411792	0.105429	Hoxa11_Hoxc12	ENSMUST00000116586.2|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr7_+_43634718_43634741	0.10339	Hoxa11_Hoxc12	ENSMUST00000032663.8|Ceacam18|ENSMUSG00000030472.8|carcinoembryonic antigen-related cell adhesion molecule 18
mm10_v2_chr13_-_66852017_66852017	0.0991791	Hoxa11_Hoxc12	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr7_-_46795661_46795722	0.0947994	Hoxa11_Hoxc12	ENSMUST00000123725.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr2_+_74711911_74711939	0.0876765	Hoxa11_Hoxc12	ENSMUST00000111983.2|Hoxd3|ENSMUSG00000079277.3|homeobox D3
mm10_v2_chr4_+_108328136_108328180	0.0868467	Hoxa11_Hoxc12	ENSMUST00000131656.1|Selrc1|ENSMUSG00000048351.8|Sel1 repeat containing 1
mm10_v2_chr4_+_109235262_109235262	0.0835133	Hoxa11_Hoxc12	ENSMUST00000106631.2|Calr4|ENSMUSG00000028558.8|calreticulin 4
mm10_v2_chr10_-_67912620_67912685	0.0833	Hoxa11_Hoxc12	ENSMUST00000064656.7|Zfp365|ENSMUSG00000037855.9|zinc finger protein 365
mm10_v2_chrX_+_133908441_133908462	0.0801364	Hoxa11_Hoxc12	ENSMUST00000113304.1|Srpx2|ENSMUSG00000031253.9|sushi-repeat-containing protein, X-linked 2
mm10_v2_chr9_-_14782964_14782964	0.0763295	Hoxa11_Hoxc12	ENSMUST00000034406.3|Ankrd49|ENSMUSG00000031931.3|ankyrin repeat domain 49
mm10_v2_chr17_+_19362135_19362135	0.075315	Hoxa11_Hoxc12	ENSMUST00000176107.1|Vmn2r99|ENSMUSG00000090304.3|vomeronasal 2, receptor 99
mm10_v2_chr3_+_126597415_126597440	0.073392	Hoxa11_Hoxc12	ENSMUST00000066452.7|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000171289.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta 	ENSMUST00000106399.1|Camk2d|ENSMUSG00000053819.10|calcium/calmodulin-dependent protein kinase II, delta
mm10_v2_chr4_+_102741287_102741298	0.072558	Hoxa11_Hoxc12	ENSMUST00000097948.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr6_+_40325471_40325501	0.0677248	Hoxa11_Hoxc12	ENSMUST00000031977.8|Agk|ENSMUSG00000029916.8|acylglycerol kinase
mm10_v2_chr11_-_4441082_4441105	0.0617194	Hoxa11_Hoxc12	ENSMUST00000109949.1|Hormad2|ENSMUSG00000020419.5|HORMA domain containing 2 	ENSMUST00000130174.1|Hormad2|ENSMUSG00000020419.5|HORMA domain containing 2
mm10_v2_chr9_-_110946158_110946158	0.0574493	Hoxa11_Hoxc12	ENSMUST00000035075.8|Tdgf1|ENSMUSG00000032494.8|teratocarcinoma-derived growth factor 1
mm10_v2_chr12_-_27160311_27160476	0.0533414	Hoxa11_Hoxc12	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr13_-_19732929_19732954	0.0521256	Hoxa11_Hoxc12	ENSMUST00000151029.1|A530099J19Rik|ENSMUSG00000047462.8|RIKEN cDNA A530099J19 gene
mm10_v2_chr11_+_59306920_59306935	0.050175	Hoxa11_Hoxc12	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr8_+_40307458_40307458	0.049152	Hoxa11_Hoxc12	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr18_-_43393346_43393381	0.0406762	Hoxa11_Hoxc12	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr8_+_105225145_105225193	0.0383959	Hoxa11_Hoxc12	ENSMUST00000034361.3|D230025D16Rik|ENSMUSG00000031889.3|RIKEN cDNA D230025D16 gene
mm10_v2_chr7_+_125318334_125318359	0.0372692	Hoxa11_Hoxc12	ENSMUST00000060220.1|4930533L02Rik|ENSMUSG00000051614.1|RIKEN cDNA 4930533L02 gene
mm10_v2_chr16_+_87354185_87354249	0.0364418	Hoxa11_Hoxc12	ENSMUST00000054442.4|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118310.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000120284.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118115.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm10_v2_chr17_-_6477102_6477102	0.0322736	Hoxa11_Hoxc12	ENSMUST00000167717.2|Tmem181b-ps|ENSMUSG00000079733.3|transmembrane protein 181B, pseudogene
mm10_v2_chr15_+_100423193_100423193	0.0307378	Hoxa11_Hoxc12	ENSMUST00000148928.1|Gm5475|ENSMUSG00000087444.1|predicted gene 5475
mm10_v2_chr12_-_27160498_27160633	0.0269312	Hoxa11_Hoxc12	ENSMUST00000182592.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr5_+_73651376_73651394	0.0244906	Hoxa11_Hoxc12	ENSMUST00000071077.7|Spata18|ENSMUSG00000029155.10|spermatogenesis associated 18 	ENSMUST00000178631.1|Spata18|ENSMUSG00000029155.10|spermatogenesis associated 18 	ENSMUST00000041422.8|Spata18|ENSMUSG00000029155.10|spermatogenesis associated 18
mm10_v2_chr11_-_65159890_65159891	0.0137366	Hoxa11_Hoxc12	ENSMUST00000020855.3|1700086D15Rik|ENSMUSG00000020548.4|RIKEN cDNA 1700086D15 gene 	ENSMUST00000108696.1|1700086D15Rik|ENSMUSG00000020548.4|RIKEN cDNA 1700086D15 gene
mm10_v2_chr11_+_75732869_75732975	0.00797156	Hoxa11_Hoxc12	ENSMUST00000067664.3|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr18_+_37333853_37333946	0.00753889	Hoxa11_Hoxc12	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr14_-_55671873_55671918	0.00361797	Hoxa11_Hoxc12	ENSMUST00000163750.1|Nedd8|ENSMUSG00000010376.8|neural precursor cell expressed, developmentally down-regulated gene 8 	ENSMUST00000010520.8|Nedd8|ENSMUSG00000010376.8|neural precursor cell expressed, developmentally down-regulated gene 8
mm10_v2_chr11_+_62458414_62458469	0.00211191	Hoxa11_Hoxc12	ENSMUST00000014389.5|Pigl|ENSMUSG00000014245.8|phosphatidylinositol glycan anchor biosynthesis, class L
