mm10_v2_chr13_-_12340723_12340760	1.96768	Hoxa1	ENSMUST00000168193.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000110616.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000064204.7|Actn2|ENSMUSG00000052374.8|actinin alpha 2
mm10_v2_chr11_-_43601540_43601567	1.95902	Hoxa1	ENSMUST00000020672.4|Fabp6|ENSMUSG00000020405.4|fatty acid binding protein 6, ileal (gastrotropin)
mm10_v2_chr17_+_25298389_25298403	1.75067	Hoxa1	ENSMUST00000037453.2|Prss34|ENSMUSG00000056399.1|protease, serine, 34
mm10_v2_chr15_-_95528702_95528777	1.69847	Hoxa1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr11_+_24080664_24080706	0.991294	Hoxa1	ENSMUST00000118955.1|Bcl11a|ENSMUSG00000000861.9|B cell CLL/lymphoma 11A (zinc finger protein)
mm10_v2_chr14_-_69284982_69285112	0.962244	Hoxa1	ENSMUST00000183882.1|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37 	ENSMUST00000037064.4|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37
mm10_v2_chr10_+_88885992_88886010	0.751236	Hoxa1	ENSMUST00000020255.6|Slc5a8|ENSMUSG00000020062.6|solute carrier family 5 (iodide transporter), member 8
mm10_v2_chrX_+_56454871_56454887	0.743675	Hoxa1	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr1_-_119053339_119053370	0.69881	Hoxa1	ENSMUST00000161301.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2 	ENSMUST00000161451.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2 	ENSMUST00000162607.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr3_+_114030532_114030571	0.696208	Hoxa1	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr7_-_30534180_30534180	0.662007	Hoxa1	ENSMUST00000044338.4|Arhgap33|ENSMUSG00000036882.6|Rho GTPase activating protein 33
mm10_v2_chr9_+_65890237_65890343	0.654244	Hoxa1	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr4_-_143299498_143299564	0.644567	Hoxa1	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr14_-_69503316_69503362	0.623311	Hoxa1	ENSMUST00000179116.2|Gm21464|ENSMUSG00000093954.2|predicted gene, 21464
mm10_v2_chr7_+_73391160_73391296	0.618603	Hoxa1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr1_-_45503282_45503282	0.586946	Hoxa1	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr2_-_131042682_131042682	0.578603	Hoxa1	ENSMUST00000028787.5|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110239.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110234.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4
mm10_v2_chr8_-_8639363_8639363	0.559714	Hoxa1	ENSMUST00000152698.1|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr18_-_13972617_13972733	0.522092	Hoxa1	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr9_-_21312255_21312333	0.515827	Hoxa1	ENSMUST00000115433.3|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit 	ENSMUST00000003397.7|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit
mm10_v2_chr15_+_102990576_102990622	0.496758	Hoxa1	ENSMUST00000001703.6|Hoxc8|ENSMUSG00000001657.6|homeobox C8
mm10_v2_chr2_+_165595009_165595080	0.457742	Hoxa1	ENSMUST00000088132.6|Eya2|ENSMUSG00000017897.12|eyes absent 2 homolog (Drosophila)
mm10_v2_chr10_+_14523062_14523065	0.454506	Hoxa1	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr19_-_41743665_41743706	0.420557	Hoxa1	ENSMUST00000025993.3|Slit1|ENSMUSG00000025020.5|slit homolog 1 (Drosophila)
mm10_v2_chr13_+_72628802_72628825	0.409568	Hoxa1	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr6_+_142298419_142298435	0.403088	Hoxa1	ENSMUST00000041993.2|Iapp|ENSMUSG00000041681.2|islet amyloid polypeptide
mm10_v2_chr7_+_144838590_144838614	0.373888	Hoxa1	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chr9_+_110344185_110344204	0.346412	Hoxa1	ENSMUST00000142100.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr1_-_119053619_119053638	0.342244	Hoxa1	ENSMUST00000062483.8|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr2_+_32587057_32587123	0.31923	Hoxa1	ENSMUST00000102818.4|St6galnac4|ENSMUSG00000079442.6|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm10_v2_chr15_+_82252397_82252475	0.318605	Hoxa1	ENSMUST00000136948.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr2_-_160619971_160619971	0.318026	Hoxa1	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr5_+_27261916_27261980	0.315122	Hoxa1	ENSMUST00000101471.3|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr4_-_143299463_143299482	0.314463	Hoxa1	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr2_-_131043088_131043088	0.307672	Hoxa1	ENSMUST00000110240.3|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000066958.4|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110235.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4
mm10_v2_chr17_-_51826562_51826601	0.304598	Hoxa1	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr13_+_31806627_31806650	0.302038	Hoxa1	ENSMUST00000062292.2|Foxc1|ENSMUSG00000050295.2|forkhead box C1
mm10_v2_chr2_+_163225363_163225469	0.299564	Hoxa1	ENSMUST00000099110.3|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2 	ENSMUST00000165937.1|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2
mm10_v2_chrX_-_150813637_150813712	0.298305	Hoxa1	ENSMUST00000112700.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr9_-_96862903_96862985	0.278244	Hoxa1	ENSMUST00000121077.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2 	ENSMUST00000124923.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2
mm10_v2_chrX_-_150812932_150813154	0.268828	Hoxa1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr5_-_145201829_145201873	0.260512	Hoxa1	ENSMUST00000162220.1|Zkscan14|ENSMUSG00000029627.11|zinc finger with KRAB and SCAN domains 14 	ENSMUST00000031632.8|Zkscan14|ENSMUSG00000029627.11|zinc finger with KRAB and SCAN domains 14
mm10_v2_chr19_+_46396885_46397004	0.259299	Hoxa1	ENSMUST00000039922.6|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000111867.2|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000120778.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr9_+_58129321_58129349	0.247895	Hoxa1	ENSMUST00000034880.3|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr9_+_58129062_58129088	0.235927	Hoxa1	ENSMUST00000085677.2|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr10_+_79988584_79988683	0.235816	Hoxa1	ENSMUST00000004784.4|Cnn2|ENSMUSG00000004665.4|calponin 2 	ENSMUST00000105374.1|Cnn2|ENSMUSG00000004665.4|calponin 2
mm10_v2_chr3_+_55782500_55782521	0.211163	Hoxa1	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr10_+_94576254_94576270	0.207443	Hoxa1	ENSMUST00000117929.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr4_+_119814495_119814526	0.207362	Hoxa1	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr3_+_58526303_58526303	0.202205	Hoxa1	ENSMUST00000138848.1|Eif2a|ENSMUSG00000027810.8|eukaryotic translation initiation factor 2A
mm10_v2_chr2_-_152951688_152951700	0.199787	Hoxa1	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr14_+_66344369_66344380	0.193959	Hoxa1	ENSMUST00000118426.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000121955.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000120229.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000134440.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr9_-_31464238_31464252	0.192202	Hoxa1	ENSMUST00000048050.7|Tmem45b|ENSMUSG00000041737.7|transmembrane protein 45b
mm10_v2_chr4_+_101507947_101508032	0.179949	Hoxa1	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr4_+_138775735_138775784	0.174982	Hoxa1	ENSMUST00000030528.2|Pla2g2d|ENSMUSG00000041202.6|phospholipase A2, group IID
mm10_v2_chr3_+_58525821_58525821	0.16901	Hoxa1	ENSMUST00000029387.8|Eif2a|ENSMUSG00000027810.8|eukaryotic translation initiation factor 2A
mm10_v2_chr3_+_68572245_68572392	0.167597	Hoxa1	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr4_-_145315143_145315169	0.166784	Hoxa1	ENSMUST00000030339.6|Tnfrsf8|ENSMUSG00000028602.6|tumor necrosis factor receptor superfamily, member 8
mm10_v2_chr5_+_137030275_137030295	0.165904	Hoxa1	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr2_+_90885860_90885872	0.160414	Hoxa1	ENSMUST00000111466.2|C1qtnf4|ENSMUSG00000040794.5|C1q and tumor necrosis factor related protein 4
mm10_v2_chr1_-_180813534_180813583	0.154432	Hoxa1	ENSMUST00000159789.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000081026.4|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr1_+_153891646_153891740	0.151912	Hoxa1	ENSMUST00000050660.4|Teddm1|ENSMUSG00000047053.4|transmembrane epididymal protein 1
mm10_v2_chrX_-_75578188_75578247	0.151764	Hoxa1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr14_+_66344296_66344316	0.151694	Hoxa1	ENSMUST00000152093.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000074523.6|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr17_-_28622419_28622473	0.149028	Hoxa1	ENSMUST00000114767.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr11_+_58665561_58665561	0.148357	Hoxa1	ENSMUST00000072030.3|Olfr322|ENSMUSG00000063549.3|olfactory receptor 322
mm10_v2_chr16_+_36308045_36308045	0.14783	Hoxa1	ENSMUST00000114851.1|Gm4758|ENSMUSG00000079595.1|predicted gene 4758
mm10_v2_chr1_-_180813591_180813632	0.144495	Hoxa1	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr1_+_89454769_89454885	0.143456	Hoxa1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr2_+_65845767_65845799	0.132226	Hoxa1	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr17_+_78491549_78491565	0.11661	Hoxa1	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr4_+_101507855_101507871	0.115416	Hoxa1	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr6_-_52012476_52012551	0.11353	Hoxa1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr14_-_103844173_103844198	0.113247	Hoxa1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr15_+_98167806_98167873	0.1127	Hoxa1	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr11_-_5898771_5898788	0.108366	Hoxa1	ENSMUST00000102921.3|Myl7|ENSMUSG00000020469.8|myosin, light polypeptide 7, regulatory
mm10_v2_chr10_-_10429839_10429839	0.108332	Hoxa1	ENSMUST00000045328.7|Adgb|ENSMUSG00000050994.13|androglobin
mm10_v2_chr1_+_153665274_153665325	0.103964	Hoxa1	ENSMUST00000152114.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111812.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr6_+_49319274_49319367	0.103016	Hoxa1	ENSMUST00000055559.7|Ccdc126|ENSMUSG00000050786.8|coiled-coil domain containing 126 	ENSMUST00000114491.1|Ccdc126|ENSMUSG00000050786.8|coiled-coil domain containing 126
mm10_v2_chr6_+_116506516_116506516	0.101068	Hoxa1	ENSMUST00000075756.2|Olfr212|ENSMUSG00000053251.5|olfactory receptor 212
mm10_v2_chr13_+_99184733_99184823	0.0952935	Hoxa1	ENSMUST00000056558.8|Zfp366|ENSMUSG00000050919.8|zinc finger protein 366
mm10_v2_chr13_-_103764502_103764505	0.090822	Hoxa1	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr11_-_69549108_69549108	0.0891952	Hoxa1	ENSMUST00000108659.1|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr8_-_105484350_105484350	0.0883389	Hoxa1	ENSMUST00000044286.5|Zdhhc1|ENSMUSG00000039199.5|zinc finger, DHHC domain containing 1
mm10_v2_chr16_+_18877037_18877241	0.0881012	Hoxa1	ENSMUST00000120532.1|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae) 	ENSMUST00000004222.7|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm10_v2_chr9_-_4796218_4796267	0.0872858	Hoxa1	ENSMUST00000027020.6|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000063508.7|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000163309.1|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm10_v2_chr7_+_103979176_103979176	0.0862083	Hoxa1	ENSMUST00000098185.1|Olfr635|ENSMUSG00000094520.1|olfactory receptor 635
mm10_v2_chr2_+_36452587_36452587	0.085464	Hoxa1	ENSMUST00000072854.1|Olfr340|ENSMUSG00000094266.1|olfactory receptor 340
mm10_v2_chr2_+_36230426_36230491	0.0781555	Hoxa1	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr9_+_113930934_113930987	0.0779983	Hoxa1	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr4_+_150997081_150997097	0.0696037	Hoxa1	ENSMUST00000030803.1|Uts2|ENSMUSG00000028963.1|urotensin 2
mm10_v2_chr10_+_90071095_90071117	0.0675789	Hoxa1	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr14_+_70077375_70077445	0.0648952	Hoxa1	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr11_+_96351632_96351632	0.063398	Hoxa1	ENSMUST00000100523.5|Hoxb2|ENSMUSG00000075588.5|homeobox B2
mm10_v2_chr2_-_26246707_26246707	0.0568095	Hoxa1	ENSMUST00000166349.1|C030048H21Rik|ENSMUSG00000090340.1|RIKEN cDNA C030048H21 gene
mm10_v2_chr12_-_80260356_80260371	0.0520829	Hoxa1	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chr3_+_138352378_138352378	0.0507829	Hoxa1	ENSMUST00000090166.4|Adh6b|ENSMUSG00000074206.2|alcohol dehydrogenase 6B (class V)
mm10_v2_chr5_-_107289561_107289637	0.0502127	Hoxa1	ENSMUST00000031224.8|Tgfbr3|ENSMUSG00000029287.8|transforming growth factor, beta receptor III
mm10_v2_chr15_-_78388757_78388776	0.04863	Hoxa1	ENSMUST00000169575.1|Tex33|ENSMUSG00000062154.7|testis expressed 33
mm10_v2_chr9_+_58129476_58129501	0.0476922	Hoxa1	ENSMUST00000133287.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr10_+_81628540_81628567	0.0423955	Hoxa1	ENSMUST00000123896.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr12_+_53248677_53248677	0.0420815	Hoxa1	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr5_+_43515513_43515588	0.0414335	Hoxa1	ENSMUST00000167522.1|C1qtnf7|ENSMUSG00000061535.8|C1q and tumor necrosis factor related protein 7 	ENSMUST00000144558.1|C1qtnf7|ENSMUSG00000061535.8|C1q and tumor necrosis factor related protein 7 	ENSMUST00000076939.6|C1qtnf7|ENSMUSG00000061535.8|C1q and tumor necrosis factor related protein 7
mm10_v2_chr15_+_74516196_74516219	0.0386207	Hoxa1	ENSMUST00000042035.9|Bai1|ENSMUSG00000034730.10|brain-specific angiogenesis inhibitor 1
mm10_v2_chr17_-_28622479_28622521	0.0371071	Hoxa1	ENSMUST00000130643.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr2_+_152962485_152962510	0.0368961	Hoxa1	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr11_-_65159890_65159891	0.0309938	Hoxa1	ENSMUST00000020855.3|1700086D15Rik|ENSMUSG00000020548.4|RIKEN cDNA 1700086D15 gene 	ENSMUST00000108696.1|1700086D15Rik|ENSMUSG00000020548.4|RIKEN cDNA 1700086D15 gene
mm10_v2_chr6_+_40442863_40442937	0.0207159	Hoxa1	ENSMUST00000038907.8|Wee2|ENSMUSG00000037159.8|WEE1 homolog 2 (S. pombe) 	ENSMUST00000141490.1|Wee2|ENSMUSG00000037159.8|WEE1 homolog 2 (S. pombe)
mm10_v2_chr7_+_140322602_140322602	0.0201166	Hoxa1	ENSMUST00000078103.2|Olfr525|ENSMUSG00000061489.2|olfactory receptor 525
mm10_v2_chr2_+_124610573_124610613	0.0192211	Hoxa1	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr17_+_70522149_70522169	0.0183761	Hoxa1	ENSMUST00000140728.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr9_-_20336094_20336094	0.0173415	Hoxa1	ENSMUST00000086473.3|Olfr18|ENSMUSG00000066896.3|olfactory receptor 18
mm10_v2_chr14_+_56575603_56575633	0.0170565	Hoxa1	ENSMUST00000161553.1|Parp4|ENSMUSG00000054509.7|poly (ADP-ribose) polymerase family, member 4
mm10_v2_chr7_-_16917184_16917212	0.0141177	Hoxa1	ENSMUST00000173139.1|Calm3|ENSMUSG00000019370.10|calmodulin 3
mm10_v2_chr4_-_11981265_11981265	0.0121981	Hoxa1	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chr4_-_108406676_108406745	0.0117429	Hoxa1	ENSMUST00000184609.1|Gpx7|ENSMUSG00000028597.11|glutathione peroxidase 7
