mm10_v2_chr7_-_142657466_142657496	14.081	Gli3_Zic1	ENSMUST00000097936.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2 	ENSMUST00000000033.5|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr12_+_109453455_109453660	12.8741	Gli3_Zic1	ENSMUST00000109844.4|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109842.2|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109843.1|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109846.4|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000173539.1|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109841.2|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila)
mm10_v2_chr11_+_72999069_72999103	11.1966	Gli3_Zic1	ENSMUST00000021141.7|P2rx1|ENSMUSG00000020787.8|purinergic receptor P2X, ligand-gated ion channel, 1
mm10_v2_chr7_+_24370255_24370312	11.1115	Gli3_Zic1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr6_+_30738044_30738059	9.34278	Gli3_Zic1	ENSMUST00000128398.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000163949.2|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000124665.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr11_-_102365111_102365280	9.1038	Gli3_Zic1	ENSMUST00000006749.9|Slc4a1|ENSMUSG00000006574.9|solute carrier family 4 (anion exchanger), member 1
mm10_v2_chr2_+_157560078_157560130	9.02725	Gli3_Zic1	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr6_+_113531675_113531721	8.8122	Gli3_Zic1	ENSMUST00000036340.5|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2 	ENSMUST00000101051.2|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2
mm10_v2_chr9_-_103480328_103480348	7.53385	Gli3_Zic1	ENSMUST00000124310.2|Bfsp2|ENSMUSG00000032556.9|beaded filament structural protein 2, phakinin
mm10_v2_chr12_+_109540979_109541007	7.40276	Gli3_Zic1	ENSMUST00000129245.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000143836.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000124106.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr7_-_142656018_142656058	6.9371	Gli3_Zic1	ENSMUST00000178921.1|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr12_+_109545390_109545443	6.6527	Gli3_Zic1	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr13_+_44729535_44729697	6.42554	Gli3_Zic1	ENSMUST00000174068.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr18_-_78142119_78142154	5.80197	Gli3_Zic1	ENSMUST00000160639.1|Slc14a1|ENSMUSG00000059336.8|solute carrier family 14 (urea transporter), member 1
mm10_v2_chr7_-_24760311_24760327	5.46929	Gli3_Zic1	ENSMUST00000063956.5|Cd177|ENSMUSG00000052212.5|CD177 antigen
mm10_v2_chr8_+_23139064_23139105	5.41245	Gli3_Zic1	ENSMUST00000033947.8|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr4_-_68954351_68954397	5.31995	Gli3_Zic1	ENSMUST00000030036.5|Brinp1|ENSMUSG00000028351.5|bone morphogenic protein/retinoic acid inducible neural specific 1
mm10_v2_chr11_+_11684967_11685027	5.03605	Gli3_Zic1	ENSMUST00000126058.1|Ikzf1|ENSMUSG00000018654.11|IKAROS family zinc finger 1 	ENSMUST00000141436.1|Ikzf1|ENSMUSG00000018654.11|IKAROS family zinc finger 1
mm10_v2_chr8_+_23139030_23139061	4.94177	Gli3_Zic1	ENSMUST00000121075.1|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr10_-_127341583_127341614	4.41721	Gli3_Zic1	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chrX_-_7574120_7574312	4.22031	Gli3_Zic1	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr11_+_101176041_101176041	4.04969	Gli3_Zic1	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr1_-_133801031_133801041	4.04966	Gli3_Zic1	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr4_-_148130678_148130706	3.84227	Gli3_Zic1	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr7_+_99268338_99268388	3.68039	Gli3_Zic1	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr11_+_72042455_72042481	3.66888	Gli3_Zic1	ENSMUST00000021164.3|Fam64a|ENSMUSG00000020808.3|family with sequence similarity 64, member A
mm10_v2_chr13_-_117025505_117025541	3.66478	Gli3_Zic1	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr17_+_25366550_25366550	3.65759	Gli3_Zic1	ENSMUST00000069616.7|Tpsb2|ENSMUSG00000033825.9|tryptase beta 2
mm10_v2_chr18_-_35662180_35662195	3.64743	Gli3_Zic1	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr10_-_79788924_79788985	3.61876	Gli3_Zic1	ENSMUST00000020573.6|Prss57|ENSMUSG00000020323.8|protease, serine 57
mm10_v2_chr15_-_103310425_103310444	3.61378	Gli3_Zic1	ENSMUST00000079824.4|Gpr84|ENSMUSG00000063234.4|G protein-coupled receptor 84
mm10_v2_chr15_-_100669496_100669511	3.55702	Gli3_Zic1	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr2_-_150668198_150668258	3.54161	Gli3_Zic1	ENSMUST00000028944.3|Acss1|ENSMUSG00000027452.5|acyl-CoA synthetase short-chain family member 1
mm10_v2_chr15_-_100669512_100669529	3.51492	Gli3_Zic1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr4_-_83021102_83021135	3.45835	Gli3_Zic1	ENSMUST00000071708.5|Frem1|ENSMUSG00000059049.8|Fras1 related extracellular matrix protein 1
mm10_v2_chrX_-_7964166_7964191	3.43515	Gli3_Zic1	ENSMUST00000128449.1|Gata1|ENSMUSG00000031162.8|GATA binding protein 1
mm10_v2_chr8_-_71723308_71723357	3.42379	Gli3_Zic1	ENSMUST00000125092.1|Fcho1|ENSMUSG00000070000.7|FCH domain only 1
mm10_v2_chr7_+_27499315_27499331	3.4008	Gli3_Zic1	ENSMUST00000098644.2|Prx|ENSMUSG00000053198.7|periaxin 	ENSMUST00000108355.1|Prx|ENSMUSG00000053198.7|periaxin
mm10_v2_chr3_-_69044697_69044763	3.33845	Gli3_Zic1	ENSMUST00000136512.1|Trim59|ENSMUSG00000034317.8|tripartite motif-containing 59 	ENSMUST00000143454.1|Trim59|ENSMUSG00000034317.8|tripartite motif-containing 59 	ENSMUST00000107802.1|Trim59|ENSMUSG00000034317.8|tripartite motif-containing 59
mm10_v2_chr15_+_102296256_102296330	3.29113	Gli3_Zic1	ENSMUST00000064924.4|Espl1|ENSMUSG00000058290.3|extra spindle poles-like 1 (S. cerevisiae)
mm10_v2_chr13_+_108316395_108316422	3.2131	Gli3_Zic1	ENSMUST00000171178.1|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr9_+_62858085_62858138	3.19838	Gli3_Zic1	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr2_+_35282380_35282442	3.07492	Gli3_Zic1	ENSMUST00000028239.6|Gsn|ENSMUSG00000026879.8|gelsolin
mm10_v2_chrX_+_159303266_159303281	3.03409	Gli3_Zic1	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr2_+_118111876_118111899	3.02005	Gli3_Zic1	ENSMUST00000039559.8|Thbs1|ENSMUSG00000040152.8|thrombospondin 1
mm10_v2_chr7_+_28540863_28540886	2.95883	Gli3_Zic1	ENSMUST00000119180.2|Sycn|ENSMUSG00000084174.2|syncollin
mm10_v2_chr15_+_99074968_99075005	2.95379	Gli3_Zic1	ENSMUST00000039665.6|Troap|ENSMUSG00000032783.8|trophinin associated protein
mm10_v2_chr4_-_4138432_4138480	2.89562	Gli3_Zic1	ENSMUST00000070375.7|Penk|ENSMUSG00000045573.9|preproenkephalin
mm10_v2_chr5_+_5573952_5574013	2.86218	Gli3_Zic1	ENSMUST00000101627.2|Gm8773|ENSMUSG00000073234.2|predicted gene 8773
mm10_v2_chr9_-_123678782_123678850	2.86025	Gli3_Zic1	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chrX_-_150812715_150812805	2.85104	Gli3_Zic1	ENSMUST00000112697.3|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr9_-_123678873_123678885	2.75233	Gli3_Zic1	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr7_+_5056856_5056916	2.72611	Gli3_Zic1	ENSMUST00000131368.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106 	ENSMUST00000123956.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr15_-_95528702_95528777	2.64246	Gli3_Zic1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr15_-_85581809_85581821	2.62861	Gli3_Zic1	ENSMUST00000023015.7|Wnt7b|ENSMUSG00000022382.8|wingless-related MMTV integration site 7B
mm10_v2_chr1_-_75505641_75505703	2.62786	Gli3_Zic1	ENSMUST00000155084.1|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr17_+_56304313_56304407	2.62602	Gli3_Zic1	ENSMUST00000113035.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000113039.2|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000142387.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1
mm10_v2_chr11_+_69095217_69095289	2.5028	Gli3_Zic1	ENSMUST00000101004.2|Per1|ENSMUSG00000020893.11|period circadian clock 1
mm10_v2_chr2_-_156839790_156839892	2.47814	Gli3_Zic1	ENSMUST00000134838.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000137463.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000149275.2|Gm14230|ENSMUSG00000087179.2|predicted gene 14230
mm10_v2_chr4_-_117178726_117178754	2.47649	Gli3_Zic1	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr11_-_83462961_83463071	2.47214	Gli3_Zic1	ENSMUST00000021020.6|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000119346.1|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000103209.3|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000108137.2|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin)
mm10_v2_chr4_+_44943727_44943791	2.44545	Gli3_Zic1	ENSMUST00000154177.1|Gm12678|ENSMUSG00000084854.1|predicted gene 12678
mm10_v2_chr5_-_24730635_24730727	2.43193	Gli3_Zic1	ENSMUST00000068693.5|Wdr86|ENSMUSG00000055235.5|WD repeat domain 86
mm10_v2_chr1_+_129273344_129273470	2.40529	Gli3_Zic1	ENSMUST00000073527.6|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B 	ENSMUST00000040311.7|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B
mm10_v2_chr9_-_35558522_35558548	2.363	Gli3_Zic1	ENSMUST00000034612.5|Ddx25|ENSMUSG00000032101.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm10_v2_chr4_+_43957401_43957496	2.35296	Gli3_Zic1	ENSMUST00000030202.7|Glipr2|ENSMUSG00000028480.8|GLI pathogenesis-related 2
mm10_v2_chr9_-_108190352_108190420	2.32792	Gli3_Zic1	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr7_-_126704816_126704854	2.30745	Gli3_Zic1	ENSMUST00000032949.7|Coro1a|ENSMUSG00000030707.9|coronin, actin binding protein 1A
mm10_v2_chr2_-_91931675_91931688	2.30441	Gli3_Zic1	ENSMUST00000111309.1|Mdk|ENSMUSG00000027239.8|midkine
mm10_v2_chr8_+_123411424_123411562	2.26445	Gli3_Zic1	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr1_-_75506331_75506402	2.22753	Gli3_Zic1	ENSMUST00000113567.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1 	ENSMUST00000113565.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr7_-_44227421_44227421	2.20328	Gli3_Zic1	ENSMUST00000072123.4|Gm10109|ENSMUSG00000062073.5|predicted gene 10109
mm10_v2_chr2_-_92371039_92371062	2.18574	Gli3_Zic1	ENSMUST00000068586.6|Gyltl1b|ENSMUSG00000040434.10|glycosyltransferase-like 1B
mm10_v2_chr10_+_79777261_79777280	2.17756	Gli3_Zic1	ENSMUST00000020575.4|Fstl3|ENSMUSG00000020325.10|follistatin-like 3
mm10_v2_chr11_+_75656103_75656198	2.1629	Gli3_Zic1	ENSMUST00000136935.1|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr11_+_96282648_96282725	2.15805	Gli3_Zic1	ENSMUST00000168043.1|Hoxb8|ENSMUSG00000056648.4|homeobox B8
mm10_v2_chr8_-_105637403_105637497	2.1574	Gli3_Zic1	ENSMUST00000182046.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr12_+_103388656_103388723	2.14776	Gli3_Zic1	ENSMUST00000101094.2|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2 	ENSMUST00000021620.6|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2
mm10_v2_chr13_-_99516537_99516602	2.1456	Gli3_Zic1	ENSMUST00000064762.4|Map1b|ENSMUSG00000052727.5|microtubule-associated protein 1B
mm10_v2_chr3_+_31149934_31149958	2.12857	Gli3_Zic1	ENSMUST00000046174.6|Cldn11|ENSMUSG00000037625.6|claudin 11
mm10_v2_chrX_+_74329058_74329076	2.11711	Gli3_Zic1	ENSMUST00000004326.3|Plxna3|ENSMUSG00000031398.7|plexin A3
mm10_v2_chr11_-_78245942_78245987	2.07643	Gli3_Zic1	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr7_-_126704736_126704762	2.06341	Gli3_Zic1	ENSMUST00000131415.1|Coro1a|ENSMUSG00000030707.9|coronin, actin binding protein 1A
mm10_v2_chr17_-_25727364_25727426	2.01421	Gli3_Zic1	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr7_+_27258725_27258815	2.01254	Gli3_Zic1	ENSMUST00000079258.6|Numbl|ENSMUSG00000063160.6|numb-like
mm10_v2_chr12_-_32953772_32953846	1.98948	Gli3_Zic1	ENSMUST00000180391.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene 	ENSMUST00000181670.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene
mm10_v2_chr11_+_70000578_70000624	1.94944	Gli3_Zic1	ENSMUST00000019362.8|Dvl2|ENSMUSG00000020888.10|dishevelled 2, dsh homolog (Drosophila)
mm10_v2_chr11_+_100415722_100415766	1.93779	Gli3_Zic1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
mm10_v2_chrX_-_150812932_150813154	1.92557	Gli3_Zic1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr7_-_118443549_118443571	1.91229	Gli3_Zic1	ENSMUST00000081574.4|Syt17|ENSMUSG00000058420.5|synaptotagmin XVII
mm10_v2_chr5_-_117319242_117319242	1.91202	Gli3_Zic1	ENSMUST00000100834.1|Gm10399|ENSMUSG00000072688.1|predicted gene 10399
mm10_v2_chr7_+_5056706_5056741	1.90061	Gli3_Zic1	ENSMUST00000144802.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr2_+_29889720_29889753	1.85457	Gli3_Zic1	ENSMUST00000113767.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr18_-_21652362_21652373	1.82365	Gli3_Zic1	ENSMUST00000049105.4|Klhl14|ENSMUSG00000042514.5|kelch-like 14
mm10_v2_chr6_-_125494754_125494791	1.80379	Gli3_Zic1	ENSMUST00000032492.8|Cd9|ENSMUSG00000030342.8|CD9 antigen
mm10_v2_chr15_+_78899755_78899775	1.80336	Gli3_Zic1	ENSMUST00000001226.3|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000061239.7|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000109698.2|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1
mm10_v2_chr8_+_68880491_68880564	1.79409	Gli3_Zic1	ENSMUST00000015712.8|Lpl|ENSMUSG00000015568.9|lipoprotein lipase
mm10_v2_chr11_+_115154139_115154194	1.79387	Gli3_Zic1	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr15_-_95528228_95528266	1.78417	Gli3_Zic1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr6_-_118780324_118780324	1.76266	Gli3_Zic1	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr4_+_43957678_43957735	1.76229	Gli3_Zic1	ENSMUST00000107855.1|Glipr2|ENSMUSG00000028480.8|GLI pathogenesis-related 2
mm10_v2_chr8_+_70501116_70501172	1.76084	Gli3_Zic1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr3_+_105904377_105904423	1.71175	Gli3_Zic1	ENSMUST00000000574.1|Adora3|ENSMUSG00000000562.4|adenosine A3 receptor
mm10_v2_chr2_+_29890096_29890156	1.70608	Gli3_Zic1	ENSMUST00000113762.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113765.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr1_+_65311257_65311257	1.70181	Gli3_Zic1	ENSMUST00000027083.6|Pth2r|ENSMUSG00000025946.7|parathyroid hormone 2 receptor
mm10_v2_chr4_+_154869585_154869636	1.6794	Gli3_Zic1	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr7_+_99535439_99535498	1.6541	Gli3_Zic1	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr2_+_29889785_29889895	1.63751	Gli3_Zic1	ENSMUST00000113763.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113757.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113756.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000133233.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113759.2|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113755.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000137558.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000046571.7|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr11_-_45955465_45955494	1.63638	Gli3_Zic1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr10_+_80016653_80016733	1.63226	Gli3_Zic1	ENSMUST00000099501.3|Hmha1|ENSMUSG00000035697.8|histocompatibility (minor) HA-1
mm10_v2_chr3_-_92485886_92485901	1.62864	Gli3_Zic1	ENSMUST00000054599.7|Sprr1a|ENSMUSG00000050359.7|small proline-rich protein 1A
mm10_v2_chr8_-_105637350_105637392	1.60511	Gli3_Zic1	ENSMUST00000182863.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr11_+_96282529_96282556	1.59262	Gli3_Zic1	ENSMUST00000125410.1|Hoxb8|ENSMUSG00000056648.4|homeobox B8
mm10_v2_chr13_+_44729794_44729807	1.57868	Gli3_Zic1	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr10_+_80016901_80016916	1.57101	Gli3_Zic1	ENSMUST00000105373.1|Hmha1|ENSMUSG00000035697.8|histocompatibility (minor) HA-1
mm10_v2_chr9_-_54661870_54661912	1.56995	Gli3_Zic1	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr11_-_34833631_34833663	1.56084	Gli3_Zic1	ENSMUST00000093191.2|Spdl1|ENSMUSG00000069910.2|spindle apparatus coiled-coil protein 1
mm10_v2_chr7_+_125603420_125603437	1.5393	Gli3_Zic1	ENSMUST00000033000.6|Il21r|ENSMUSG00000030745.8|interleukin 21 receptor
mm10_v2_chr14_-_54926784_54926805	1.53657	Gli3_Zic1	ENSMUST00000022813.6|Efs|ENSMUSG00000022203.6|embryonal Fyn-associated substrate
mm10_v2_chr2_+_156840077_156840141	1.53491	Gli3_Zic1	ENSMUST00000081335.6|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2 	ENSMUST00000073352.3|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr1_+_167001457_167001471	1.52567	Gli3_Zic1	ENSMUST00000126198.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr13_-_49320219_49320311	1.525	Gli3_Zic1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr15_-_100669535_100669560	1.49361	Gli3_Zic1	ENSMUST00000183211.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr2_+_29890534_29890545	1.47888	Gli3_Zic1	ENSMUST00000113764.3|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr11_+_87760533_87760587	1.45816	Gli3_Zic1	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr4_-_136956784_136956871	1.45153	Gli3_Zic1	ENSMUST00000030420.8|Epha8|ENSMUSG00000028661.8|Eph receptor A8
mm10_v2_chr2_+_29890063_29890081	1.44302	Gli3_Zic1	ENSMUST00000028128.6|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr7_-_25297866_25297958	1.42262	Gli3_Zic1	ENSMUST00000148150.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3 	ENSMUST00000155118.1|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr8_+_120002720_120002741	1.41495	Gli3_Zic1	ENSMUST00000108972.3|Crispld2|ENSMUSG00000031825.10|cysteine-rich secretory protein LCCL domain containing 2
mm10_v2_chr11_-_61494173_61494296	1.4043	Gli3_Zic1	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr12_-_4233958_4233981	1.40362	Gli3_Zic1	ENSMUST00000111169.3|Cenpo|ENSMUSG00000020652.11|centromere protein O 	ENSMUST00000020981.5|Cenpo|ENSMUSG00000020652.11|centromere protein O
mm10_v2_chr14_-_33185066_33185131	1.36642	Gli3_Zic1	ENSMUST00000061753.8|Wdfy4|ENSMUSG00000051506.10|WD repeat and FYVE domain containing 4 	ENSMUST00000130509.2|Wdfy4|ENSMUSG00000051506.10|WD repeat and FYVE domain containing 4
mm10_v2_chr5_+_43818893_43818928	1.365	Gli3_Zic1	ENSMUST00000101237.4|Bst1|ENSMUSG00000029082.11|bone marrow stromal cell antigen 1
mm10_v2_chr11_-_76399107_76399183	1.36437	Gli3_Zic1	ENSMUST00000021204.3|Nxn|ENSMUSG00000020844.6|nucleoredoxin
mm10_v2_chr2_+_105127200_105127222	1.36233	Gli3_Zic1	ENSMUST00000139585.1|Wt1|ENSMUSG00000016458.7|Wilms tumor 1 homolog
mm10_v2_chr17_+_34039437_34039481	1.3315	Gli3_Zic1	ENSMUST00000131134.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000087497.4|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114255.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114252.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2
mm10_v2_chrX_+_159697308_159697331	1.31987	Gli3_Zic1	ENSMUST00000123433.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr13_+_6548154_6548174	1.31781	Gli3_Zic1	ENSMUST00000021611.8|Pitrm1|ENSMUSG00000021193.9|pitrilysin metallepetidase 1
mm10_v2_chr18_+_62180119_62180182	1.31319	Gli3_Zic1	ENSMUST00000067743.1|Gm9949|ENSMUSG00000054589.1|predicted gene 9949
mm10_v2_chr7_+_80186835_80186904	1.30218	Gli3_Zic1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr5_-_115300912_115300944	1.30101	Gli3_Zic1	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr14_+_84443553_84443568	1.29679	Gli3_Zic1	ENSMUST00000071370.5|Pcdh17|ENSMUSG00000035566.6|protocadherin 17
mm10_v2_chr17_-_15041457_15041559	1.28553	Gli3_Zic1	ENSMUST00000097400.4|Gm3448|ENSMUSG00000079710.3|predicted gene 3448 	ENSMUST00000097398.4|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3 	ENSMUST00000040746.6|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3
mm10_v2_chr5_-_5266038_5266292	1.27767	Gli3_Zic1	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr11_+_53519725_53519800	1.27619	Gli3_Zic1	ENSMUST00000108987.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000121334.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000117061.1|Sept8|ENSMUSG00000018398.12|septin 8
mm10_v2_chr5_-_115300957_115300999	1.27543	Gli3_Zic1	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr1_+_72824482_72824503	1.26973	Gli3_Zic1	ENSMUST00000047328.4|Igfbp2|ENSMUSG00000039323.12|insulin-like growth factor binding protein 2
mm10_v2_chr1_-_133906973_133907014	1.25505	Gli3_Zic1	ENSMUST00000126123.1|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr7_+_25267669_25267723	1.22892	Gli3_Zic1	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr6_+_125067913_125067942	1.22289	Gli3_Zic1	ENSMUST00000088292.5|Lpar5|ENSMUSG00000067714.7|lysophosphatidic acid receptor 5
mm10_v2_chr2_-_153444441_153444492	1.22152	Gli3_Zic1	ENSMUST00000109784.1|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chr13_+_44730726_44730838	1.21973	Gli3_Zic1	ENSMUST00000173704.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000044608.7|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2 	ENSMUST00000173367.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr11_+_77982710_77982823	1.21768	Gli3_Zic1	ENSMUST00000108360.1|Phf12|ENSMUSG00000037791.9|PHD finger protein 12 	ENSMUST00000049167.7|Phf12|ENSMUSG00000037791.9|PHD finger protein 12
mm10_v2_chr3_+_92288566_92288566	1.21506	Gli3_Zic1	ENSMUST00000090872.4|Sprr2a3|ENSMUSG00000074445.2|small proline-rich protein 2A3
mm10_v2_chr6_+_29694204_29694250	1.20897	Gli3_Zic1	ENSMUST00000046750.7|Tspan33|ENSMUSG00000001763.8|tetraspanin 33 	ENSMUST00000115250.3|Tspan33|ENSMUSG00000001763.8|tetraspanin 33
mm10_v2_chr2_-_113848655_113848744	1.20668	Gli3_Zic1	ENSMUST00000102545.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A 	ENSMUST00000110948.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr17_-_44735612_44735710	1.20184	Gli3_Zic1	ENSMUST00000162373.1|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2 	ENSMUST00000162878.1|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2
mm10_v2_chr9_-_44234014_44234046	1.19892	Gli3_Zic1	ENSMUST00000037644.6|Cbl|ENSMUSG00000034342.8|Casitas B-lineage lymphoma
mm10_v2_chrX_+_140956892_140956923	1.19773	Gli3_Zic1	ENSMUST00000112971.1|Atg4a|ENSMUSG00000079418.3|autophagy related 4A, cysteine peptidase
mm10_v2_chrX_-_94542037_94542143	1.18974	Gli3_Zic1	ENSMUST00000026142.7|Maged1|ENSMUSG00000025151.10|melanoma antigen, family D, 1
mm10_v2_chr15_-_56694525_56694554	1.16959	Gli3_Zic1	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr11_-_106349389_106349389	1.14922	Gli3_Zic1	ENSMUST00000021056.7|Scn4a|ENSMUSG00000001027.7|sodium channel, voltage-gated, type IV, alpha
mm10_v2_chr2_+_174643534_174643534	1.13936	Gli3_Zic1	ENSMUST00000059452.5|Zfp831|ENSMUSG00000050600.5|zinc finger protein 831
mm10_v2_chr7_-_25297967_25298005	1.12852	Gli3_Zic1	ENSMUST00000005583.5|Pafah1b3|ENSMUSG00000005447.6|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm10_v2_chr11_+_115462464_115462506	1.12175	Gli3_Zic1	ENSMUST00000106532.3|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5 	ENSMUST00000092445.5|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5 	ENSMUST00000153466.1|Slc16a5|ENSMUSG00000045775.9|solute carrier family 16 (monocarboxylic acid transporters), member 5
mm10_v2_chr1_+_43445736_43445830	1.11261	Gli3_Zic1	ENSMUST00000086421.5|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2 	ENSMUST00000114744.1|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2
mm10_v2_chr8_-_22125030_22125073	1.10727	Gli3_Zic1	ENSMUST00000169834.1|Nek5|ENSMUSG00000037738.9|NIMA (never in mitosis gene a)-related expressed kinase 5
mm10_v2_chr2_-_113848601_113848615	1.10219	Gli3_Zic1	ENSMUST00000110949.2|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr13_-_23551648_23551672	1.10137	Gli3_Zic1	ENSMUST00000102971.1|Hist1h4f|ENSMUSG00000069274.3|histone cluster 1, H4f
mm10_v2_chrX_-_53114530_53114566	1.09769	Gli3_Zic1	ENSMUST00000114843.2|Plac1|ENSMUSG00000061082.5|placental specific protein 1
mm10_v2_chr18_-_62179948_62179986	1.0969	Gli3_Zic1	ENSMUST00000053640.3|Adrb2|ENSMUSG00000045730.3|adrenergic receptor, beta 2
mm10_v2_chr7_+_130865835_130865942	1.09685	Gli3_Zic1	ENSMUST00000075181.4|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENSMUST00000048180.5|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr9_-_50752348_50752373	1.08842	Gli3_Zic1	ENSMUST00000042790.3|Hspb2|ENSMUSG00000038086.3|heat shock protein 2
mm10_v2_chr8_+_121127827_121127940	1.07883	Gli3_Zic1	ENSMUST00000181609.1|Foxl1|ENSMUSG00000097084.1|forkhead box L1
mm10_v2_chr6_-_28830345_28830345	1.07676	Gli3_Zic1	ENSMUST00000171353.1|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr2_+_106693185_106693278	1.07251	Gli3_Zic1	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr7_+_128129536_128129574	1.06713	Gli3_Zic1	ENSMUST00000033053.6|Itgax|ENSMUSG00000030789.8|integrin alpha X
mm10_v2_chr11_-_70229677_70229761	1.06583	Gli3_Zic1	ENSMUST00000153449.1|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B 	ENSMUST00000000326.5|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B
mm10_v2_chr6_-_101377342_101377388	1.06574	Gli3_Zic1	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr15_+_40655020_40655054	1.06159	Gli3_Zic1	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr6_-_148944750_148944826	1.04719	Gli3_Zic1	ENSMUST00000111562.1|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A 	ENSMUST00000081956.5|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A
mm10_v2_chr11_+_73018986_73019047	1.04642	Gli3_Zic1	ENSMUST00000092937.6|Camkk1|ENSMUSG00000020785.11|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm10_v2_chr5_-_38561658_38561680	1.04484	Gli3_Zic1	ENSMUST00000005234.9|Wdr1|ENSMUSG00000005103.9|WD repeat domain 1
mm10_v2_chr5_+_117319292_117319326	1.03027	Gli3_Zic1	ENSMUST00000086464.4|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr8_+_83608175_83608198	1.02979	Gli3_Zic1	ENSMUST00000005620.8|Dnajb1|ENSMUSG00000005483.9|DnaJ (Hsp40) homolog, subfamily B, member 1
mm10_v2_chr8_+_23139157_23139277	1.01201	Gli3_Zic1	ENSMUST00000174435.1|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr17_+_34894515_34894573	1.00431	Gli3_Zic1	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr6_-_52218686_52218716	0.998319	Gli3_Zic1	ENSMUST00000134367.2|Hoxa7|ENSMUSG00000038236.6|homeobox A7
mm10_v2_chr3_-_116253467_116253484	0.998076	Gli3_Zic1	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr4_+_123233556_123233556	0.996739	Gli3_Zic1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr11_+_49901803_49901895	0.993099	Gli3_Zic1	ENSMUST00000093141.5|Rasgef1c|ENSMUSG00000020374.10|RasGEF domain family, member 1C 	ENSMUST00000093142.5|Rasgef1c|ENSMUSG00000020374.10|RasGEF domain family, member 1C
mm10_v2_chr18_+_52767994_52768149	0.991406	Gli3_Zic1	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr19_+_8802486_8802530	0.988991	Gli3_Zic1	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr2_-_59948155_59948216	0.968063	Gli3_Zic1	ENSMUST00000153136.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr7_+_128246953_128246993	0.963137	Gli3_Zic1	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr12_+_32378692_32378789	0.962615	Gli3_Zic1	ENSMUST00000172332.2|Ccdc71l|ENSMUSG00000090946.2|coiled-coil domain containing 71 like
mm10_v2_chr19_+_6384395_6384422	0.96246	Gli3_Zic1	ENSMUST00000035269.8|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase 	ENSMUST00000113483.1|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase
mm10_v2_chr2_-_33431324_33431324	0.961672	Gli3_Zic1	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr6_-_41636389_41636409	0.957086	Gli3_Zic1	ENSMUST00000031902.5|Trpv6|ENSMUSG00000029868.8|transient receptor potential cation channel, subfamily V, member 6
mm10_v2_chr14_+_25607797_25607838	0.956102	Gli3_Zic1	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr7_+_128246812_128246948	0.948132	Gli3_Zic1	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr1_+_135729147_135729234	0.944563	Gli3_Zic1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr11_+_101331069_101331069	0.938851	Gli3_Zic1	ENSMUST00000017316.6|Aoc3|ENSMUSG00000019326.8|amine oxidase, copper containing 3
mm10_v2_chrX_+_71050160_71050256	0.938171	Gli3_Zic1	ENSMUST00000082088.3|Mamld1|ENSMUSG00000059401.7|mastermind-like domain containing 1 	ENSMUST00000114629.3|Mamld1|ENSMUSG00000059401.7|mastermind-like domain containing 1
mm10_v2_chr3_+_107036156_107036181	0.932483	Gli3_Zic1	ENSMUST00000052718.3|Kcna3|ENSMUSG00000047959.3|potassium voltage-gated channel, shaker-related subfamily, member 3
mm10_v2_chr17_-_68004075_68004140	0.922934	Gli3_Zic1	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr17_+_35135463_35135539	0.919517	Gli3_Zic1	ENSMUST00000173535.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173952.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr2_-_73529725_73529736	0.916911	Gli3_Zic1	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr11_+_75655873_75655918	0.915475	Gli3_Zic1	ENSMUST00000108431.2|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr5_+_123394782_123394826	0.906277	Gli3_Zic1	ENSMUST00000111596.1|Mlxip|ENSMUSG00000038342.9|MLX interacting protein 	ENSMUST00000068237.5|Mlxip|ENSMUSG00000038342.9|MLX interacting protein
mm10_v2_chr18_-_43373248_43373272	0.9035	Gli3_Zic1	ENSMUST00000118043.1|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr7_-_101869012_101869023	0.899352	Gli3_Zic1	ENSMUST00000123321.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr18_+_22345089_22345089	0.898393	Gli3_Zic1	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr13_+_54575008_54575017	0.892264	Gli3_Zic1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr1_-_153186447_153186447	0.881806	Gli3_Zic1	ENSMUST00000027753.6|Lamc2|ENSMUSG00000026479.7|laminin, gamma 2
mm10_v2_chr7_-_79131018_79131018	0.880952	Gli3_Zic1	ENSMUST00000032827.7|Hapln3|ENSMUSG00000030606.7|hyaluronan and proteoglycan link protein 3
mm10_v2_chr1_-_133907053_133907172	0.872753	Gli3_Zic1	ENSMUST00000149380.1|Optc|ENSMUSG00000010311.9|opticin 	ENSMUST00000124051.2|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr1_-_153332724_153332804	0.865032	Gli3_Zic1	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr16_-_91011029_91011069	0.854412	Gli3_Zic1	ENSMUST00000130813.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr18_+_86394952_86394968	0.850535	Gli3_Zic1	ENSMUST00000058829.2|Neto1|ENSMUSG00000050321.2|neuropilin (NRP) and tolloid (TLL)-like 1
mm10_v2_chr1_+_133350510_133350510	0.849767	Gli3_Zic1	ENSMUST00000094556.2|Ren1|ENSMUSG00000070645.5|renin 1 structural
mm10_v2_chr19_-_5085483_5085531	0.839588	Gli3_Zic1	ENSMUST00000140389.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000151413.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000077066.7|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A
mm10_v2_chr4_-_128962420_128962449	0.837323	Gli3_Zic1	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr2_+_38339258_38339281	0.835947	Gli3_Zic1	ENSMUST00000143783.2|Lhx2|ENSMUSG00000000247.5|LIM homeobox protein 2
mm10_v2_chr7_-_142372210_142372292	0.831261	Gli3_Zic1	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr6_-_56362356_56362519	0.826912	Gli3_Zic1	ENSMUST00000044505.7|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000166102.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000164037.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000114327.2|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C
mm10_v2_chr11_+_59948206_59948261	0.81411	Gli3_Zic1	ENSMUST00000081980.6|Med9|ENSMUSG00000061650.6|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)
mm10_v2_chr15_+_103503261_103503298	0.809369	Gli3_Zic1	ENSMUST00000023132.3|Pde1b|ENSMUSG00000022489.5|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm10_v2_chr11_-_33163072_33163206	0.806915	Gli3_Zic1	ENSMUST00000093201.6|Npm1|ENSMUSG00000057113.7|nucleophosmin 1 	ENSMUST00000101375.4|Npm1|ENSMUSG00000057113.7|nucleophosmin 1 	ENSMUST00000109354.3|Npm1|ENSMUSG00000057113.7|nucleophosmin 1 	ENSMUST00000075641.3|Npm1|ENSMUSG00000057113.7|nucleophosmin 1
mm10_v2_chr5_-_122900267_122900377	0.805081	Gli3_Zic1	ENSMUST00000031435.7|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr3_+_68494208_68494268	0.802557	Gli3_Zic1	ENSMUST00000182719.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr5_+_138995038_138995066	0.791868	Gli3_Zic1	ENSMUST00000100518.2|6330403L08Rik|ENSMUSG00000075585.2|RIKEN cDNA 6330403L08 gene
mm10_v2_chr13_+_118714678_118714701	0.786706	Gli3_Zic1	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr4_-_126202583_126202698	0.765283	Gli3_Zic1	ENSMUST00000106142.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000169403.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000130334.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr17_+_35220834_35220834	0.765028	Gli3_Zic1	ENSMUST00000118793.1|Gm16181|ENSMUSG00000081650.1|predicted gene 16181
mm10_v2_chr5_+_117319258_117319284	0.763903	Gli3_Zic1	ENSMUST00000111967.1|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr17_+_35135196_35135243	0.758033	Gli3_Zic1	ENSMUST00000172571.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173491.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr8_+_123117354_123117379	0.757527	Gli3_Zic1	ENSMUST00000037900.8|Cpne7|ENSMUSG00000034796.8|copine VII
mm10_v2_chr1_-_52232296_52232432	0.757038	Gli3_Zic1	ENSMUST00000114512.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr9_-_58158498_58158554	0.751854	Gli3_Zic1	ENSMUST00000168864.2|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr4_-_120287349_120287349	0.749055	Gli3_Zic1	ENSMUST00000102656.3|Foxo6|ENSMUSG00000052135.8|forkhead box O6
mm10_v2_chr7_-_19770509_19770547	0.745079	Gli3_Zic1	ENSMUST00000003061.7|Bcam|ENSMUSG00000002980.8|basal cell adhesion molecule
mm10_v2_chr15_-_102366314_102366338	0.739833	Gli3_Zic1	ENSMUST00000078508.5|Sp7|ENSMUSG00000060284.6|Sp7 transcription factor 7
mm10_v2_chr10_-_19015347_19015410	0.733282	Gli3_Zic1	ENSMUST00000019997.4|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr7_+_130865756_130865812	0.719158	Gli3_Zic1	ENSMUST00000120441.1|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr8_+_18595131_18595186	0.702463	Gli3_Zic1	ENSMUST00000039412.8|Mcph1|ENSMUSG00000039842.9|microcephaly, primary autosomal recessive 1
mm10_v2_chr8_+_124897877_124897901	0.700675	Gli3_Zic1	ENSMUST00000034467.5|Sprtn|ENSMUSG00000031986.5|SprT-like N-terminal domain
mm10_v2_chr3_-_89245159_89245199	0.6956	Gli3_Zic1	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr17_-_12851893_12851916	0.694527	Gli3_Zic1	ENSMUST00000162389.1|Mas1|ENSMUSG00000068037.4|MAS1 oncogene 	ENSMUST00000162119.1|Mas1|ENSMUSG00000068037.4|MAS1 oncogene 	ENSMUST00000159223.1|Mas1|ENSMUSG00000068037.4|MAS1 oncogene
mm10_v2_chr3_+_105452326_105452365	0.680258	Gli3_Zic1	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chrX_-_147554050_147554087	0.67946	Gli3_Zic1	ENSMUST00000112819.2|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2 	ENSMUST00000136789.1|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2
mm10_v2_chr2_-_45110336_45110487	0.677129	Gli3_Zic1	ENSMUST00000028229.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000152232.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr17_+_35135695_35135781	0.675085	Gli3_Zic1	ENSMUST00000174478.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000174281.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173550.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chrX_-_59568068_59568094	0.672066	Gli3_Zic1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr11_-_116359060_116359103	0.669313	Gli3_Zic1	ENSMUST00000149147.1|Rnf157|ENSMUSG00000052949.8|ring finger protein 157
mm10_v2_chr11_+_51289920_51290011	0.669129	Gli3_Zic1	ENSMUST00000102765.2|Col23a1|ENSMUSG00000063564.7|collagen, type XXIII, alpha 1
mm10_v2_chr6_-_113434757_113434770	0.66642	Gli3_Zic1	ENSMUST00000113091.1|Cidec|ENSMUSG00000030278.5|cell death-inducing DFFA-like effector c
mm10_v2_chr11_-_69544556_69544556	0.665593	Gli3_Zic1	ENSMUST00000035539.5|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr12_-_111672290_111672338	0.661265	Gli3_Zic1	ENSMUST00000001304.7|Ckb|ENSMUSG00000001270.8|creatine kinase, brain
mm10_v2_chr15_-_98953541_98953560	0.660532	Gli3_Zic1	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr3_+_94478831_94478831	0.65319	Gli3_Zic1	ENSMUST00000029784.5|Celf3|ENSMUSG00000028137.5|CUGBP, Elav-like family member 3
mm10_v2_chr15_+_99579054_99579059	0.651455	Gli3_Zic1	ENSMUST00000023752.4|Aqp2|ENSMUSG00000023013.4|aquaporin 2
mm10_v2_chr4_+_48585276_48585365	0.649404	Gli3_Zic1	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr17_+_27655572_27655622	0.64892	Gli3_Zic1	ENSMUST00000045896.3|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr5_+_105519388_105519425	0.648708	Gli3_Zic1	ENSMUST00000067924.6|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C 	ENSMUST00000150981.1|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C
mm10_v2_chr3_-_101110278_101110294	0.646987	Gli3_Zic1	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr9_-_44454757_44454773	0.644426	Gli3_Zic1	ENSMUST00000047740.2|Upk2|ENSMUSG00000041523.2|uroplakin 2
mm10_v2_chr11_+_60353324_60353408	0.642302	Gli3_Zic1	ENSMUST00000070805.6|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000094140.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108723.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108722.4|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48
mm10_v2_chr5_-_123046999_123047025	0.639506	Gli3_Zic1	ENSMUST00000031437.7|Morn3|ENSMUSG00000029477.8|MORN repeat containing 3
mm10_v2_chr11_-_45955183_45955193	0.63365	Gli3_Zic1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr2_-_45110241_45110265	0.622938	Gli3_Zic1	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr3_-_130709419_130709451	0.620766	Gli3_Zic1	ENSMUST00000043937.7|Ostc|ENSMUSG00000041084.7|oligosaccharyltransferase complex subunit
mm10_v2_chr17_+_35135174_35135181	0.614964	Gli3_Zic1	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr9_+_110117703_110117703	0.61285	Gli3_Zic1	ENSMUST00000098355.3|Gm10615|ENSMUSG00000074056.3|predicted gene 10615
mm10_v2_chr10_+_69534039_69534070	0.611433	Gli3_Zic1	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr9_-_44735189_44735213	0.60629	Gli3_Zic1	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr15_-_97844164_97844245	0.60427	Gli3_Zic1	ENSMUST00000120683.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr4_+_131921771_131921771	0.598538	Gli3_Zic1	ENSMUST00000094666.3|Tmem200b|ENSMUSG00000070720.3|transmembrane protein 200B
mm10_v2_chr2_-_30801698_30801742	0.596667	Gli3_Zic1	ENSMUST00000050003.8|1700001O22Rik|ENSMUSG00000044320.8|RIKEN cDNA 1700001O22 gene
mm10_v2_chr7_-_6331235_6331290	0.586146	Gli3_Zic1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr17_-_65772686_65772752	0.582715	Gli3_Zic1	ENSMUST00000070673.7|Rab31|ENSMUSG00000056515.8|RAB31, member RAS oncogene family
mm10_v2_chr15_-_97844254_97844318	0.581017	Gli3_Zic1	ENSMUST00000119670.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000116409.2|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr16_+_38562821_38562861	0.573399	Gli3_Zic1	ENSMUST00000163948.1|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a
mm10_v2_chrX_-_166585679_166585737	0.557419	Gli3_Zic1	ENSMUST00000000412.2|Egfl6|ENSMUSG00000000402.2|EGF-like-domain, multiple 6
mm10_v2_chr6_-_35308110_35308136	0.557157	Gli3_Zic1	ENSMUST00000031868.4|Slc13a4|ENSMUSG00000029843.4|solute carrier family 13 (sodium/sulfate symporters), member 4
mm10_v2_chr5_-_118244861_118245116	0.552414	Gli3_Zic1	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr6_-_52234902_52234960	0.551287	Gli3_Zic1	ENSMUST00000125581.1|Hoxa10|ENSMUSG00000000938.11|homeobox A10
mm10_v2_chr5_-_148928619_148928659	0.549303	Gli3_Zic1	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr1_-_128103016_128103053	0.542868	Gli3_Zic1	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr17_-_23599487_23599547	0.531457	Gli3_Zic1	ENSMUST00000057029.4|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr16_+_38562806_38562819	0.510338	Gli3_Zic1	ENSMUST00000171687.1|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a 	ENSMUST00000002924.8|Tmem39a|ENSMUSG00000002845.8|transmembrane protein 39a
mm10_v2_chr11_+_78245743_78245821	0.504573	Gli3_Zic1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr8_-_69887687_69887687	0.500446	Gli3_Zic1	ENSMUST00000057831.7|Cilp2|ENSMUSG00000044006.8|cartilage intermediate layer protein 2
mm10_v2_chr7_-_111779963_111779993	0.49852	Gli3_Zic1	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr10_+_22645011_22645109	0.496161	Gli3_Zic1	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr6_-_101377897_101378016	0.495309	Gli3_Zic1	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr9_+_21616230_21616281	0.494444	Gli3_Zic1	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr13_+_109685994_109686156	0.49314	Gli3_Zic1	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr10_-_93311073_93311161	0.49066	Gli3_Zic1	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr19_+_5740885_5740904	0.490117	Gli3_Zic1	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr5_-_122264378_122264460	0.488405	Gli3_Zic1	ENSMUST00000111738.3|Tctn1|ENSMUSG00000038593.12|tectonic family member 1
mm10_v2_chr4_-_137766474_137766501	0.486434	Gli3_Zic1	ENSMUST00000139951.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr15_-_94404258_94404327	0.475463	Gli3_Zic1	ENSMUST00000035342.4|Adamts20|ENSMUSG00000022449.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 	ENSMUST00000155907.1|Adamts20|ENSMUSG00000022449.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm10_v2_chr4_-_155019399_155019437	0.475127	Gli3_Zic1	ENSMUST00000126098.1|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2 	ENSMUST00000176194.1|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr1_-_165460430_165460487	0.470354	Gli3_Zic1	ENSMUST00000027856.7|Dcaf6|ENSMUSG00000026571.7|DDB1 and CUL4 associated factor 6
mm10_v2_chr1_-_168431896_168431905	0.464854	Gli3_Zic1	ENSMUST00000176540.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr5_+_26817357_26817428	0.461439	Gli3_Zic1	ENSMUST00000071500.6|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr18_+_38601498_38601534	0.453957	Gli3_Zic1	ENSMUST00000097595.1|9630014M24Rik|ENSMUSG00000073576.1|RIKEN cDNA 9630014M24 gene
mm10_v2_chr5_-_123721007_123721062	0.446819	Gli3_Zic1	ENSMUST00000031376.7|Zcchc8|ENSMUSG00000029427.7|zinc finger, CCHC domain containing 8
mm10_v2_chr9_+_31386187_31386235	0.444506	Gli3_Zic1	ENSMUST00000086167.5|Nfrkb|ENSMUSG00000042185.7|nuclear factor related to kappa B binding protein
mm10_v2_chr3_-_145032765_145032781	0.444313	Gli3_Zic1	ENSMUST00000029919.5|Clca3|ENSMUSG00000028255.5|chloride channel calcium activated 3
mm10_v2_chr2_-_46442681_46442713	0.442498	Gli3_Zic1	ENSMUST00000123911.1|Gm13470|ENSMUSG00000086644.1|predicted gene 13470
mm10_v2_chrX_-_73966329_73966376	0.441609	Gli3_Zic1	ENSMUST00000114372.2|Hcfc1|ENSMUSG00000031386.8|host cell factor C1 	ENSMUST00000033761.6|Hcfc1|ENSMUSG00000031386.8|host cell factor C1
mm10_v2_chr11_+_4135233_4135282	0.43248	Gli3_Zic1	ENSMUST00000124670.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr6_+_47877204_47877204	0.430318	Gli3_Zic1	ENSMUST00000061890.7|Zfp282|ENSMUSG00000025821.9|zinc finger protein 282
mm10_v2_chr9_+_50752758_50752894	0.426034	Gli3_Zic1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr3_+_27984145_27984314	0.416302	Gli3_Zic1	ENSMUST00000067757.4|Pld1|ENSMUSG00000027695.10|phospholipase D1
mm10_v2_chr7_-_101868667_101868725	0.414544	Gli3_Zic1	ENSMUST00000150184.1|Folr1|ENSMUSG00000001827.5|folate receptor 1 (adult)
mm10_v2_chr9_+_21616166_21616177	0.412859	Gli3_Zic1	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr16_-_32247152_32247179	0.409647	Gli3_Zic1	ENSMUST00000042732.5|Fbxo45|ENSMUSG00000035764.5|F-box protein 45
mm10_v2_chrX_+_155262443_155262481	0.407016	Gli3_Zic1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr12_+_59066908_59066931	0.404403	Gli3_Zic1	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr3_-_89245005_89245031	0.399444	Gli3_Zic1	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr19_+_42045792_42045897	0.396806	Gli3_Zic1	ENSMUST00000172244.1|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1 	ENSMUST00000081714.4|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1
mm10_v2_chrX_-_137038265_137038309	0.395102	Gli3_Zic1	ENSMUST00000113070.2|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000113069.2|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53
mm10_v2_chr16_+_17894197_17894232	0.389918	Gli3_Zic1	ENSMUST00000046937.2|Tssk1|ENSMUSG00000041566.2|testis-specific serine kinase 1
mm10_v2_chr16_-_85803106_85803121	0.387934	Gli3_Zic1	ENSMUST00000023610.8|Adamts1|ENSMUSG00000022893.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm10_v2_chrX_+_163909132_163909169	0.386382	Gli3_Zic1	ENSMUST00000033734.7|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit 	ENSMUST00000112294.2|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr8_-_90908415_90908415	0.386212	Gli3_Zic1	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr12_+_44328882_44328954	0.381574	Gli3_Zic1	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr2_-_157135200_157135265	0.380289	Gli3_Zic1	ENSMUST00000109549.2|Samhd1|ENSMUSG00000027639.10|SAM domain and HD domain, 1 	ENSMUST00000088523.4|Samhd1|ENSMUSG00000027639.10|SAM domain and HD domain, 1 	ENSMUST00000057725.3|Samhd1|ENSMUSG00000027639.10|SAM domain and HD domain, 1
mm10_v2_chr11_+_62847111_62847132	0.379364	Gli3_Zic1	ENSMUST00000150989.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10 	ENSMUST00000176577.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr5_+_149411749_149411811	0.368707	Gli3_Zic1	ENSMUST00000093110.5|Medag|ENSMUSG00000029659.10|mesenteric estrogen dependent adipogenesis
mm10_v2_chr1_-_155099630_155099636	0.368526	Gli3_Zic1	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr9_+_118506226_118506318	0.357483	Gli3_Zic1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr4_-_129742275_129742312	0.355316	Gli3_Zic1	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr17_-_89910449_89910449	0.350933	Gli3_Zic1	ENSMUST00000086423.4|Gm10184|ENSMUSG00000066878.4|predicted pseudogene 10184
mm10_v2_chr1_-_181211437_181211552	0.347456	Gli3_Zic1	ENSMUST00000162963.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26 	ENSMUST00000162819.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr13_+_54575020_54575093	0.340846	Gli3_Zic1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr16_-_28445227_28445395	0.334707	Gli3_Zic1	ENSMUST00000100024.1|Fgf12|ENSMUSG00000022523.9|fibroblast growth factor 12
mm10_v2_chr4_+_54947976_54948054	0.33372	Gli3_Zic1	ENSMUST00000098070.3|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr4_+_48045144_48045160	0.333472	Gli3_Zic1	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr11_+_20543307_20543336	0.333018	Gli3_Zic1	ENSMUST00000093292.4|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr19_-_32388462_32388512	0.329858	Gli3_Zic1	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr15_-_89140664_89140703	0.32922	Gli3_Zic1	ENSMUST00000088827.6|Mapk12|ENSMUSG00000022610.9|mitogen-activated protein kinase 12
mm10_v2_chr8_-_34965631_34965714	0.325284	Gli3_Zic1	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr16_-_91011093_91011113	0.323226	Gli3_Zic1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr10_+_128706251_128706264	0.319596	Gli3_Zic1	ENSMUST00000054125.8|Pmel|ENSMUSG00000025359.9|premelanosome protein
mm10_v2_chr19_-_5560570_5560582	0.318444	Gli3_Zic1	ENSMUST00000025861.1|Ovol1|ENSMUSG00000024922.1|OVO homolog-like 1 (Drosophila)
mm10_v2_chr10_+_40349265_40349387	0.314588	Gli3_Zic1	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr8_+_54954728_54954820	0.311215	Gli3_Zic1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr1_-_63730306_63730342	0.311099	Gli3_Zic1	ENSMUST00000114094.2|Mdh1b|ENSMUSG00000025963.5|malate dehydrogenase 1B, NAD (soluble)
mm10_v2_chr8_-_124897685_124897757	0.309602	Gli3_Zic1	ENSMUST00000098312.2|Exoc8|ENSMUSG00000074030.2|exocyst complex component 8
mm10_v2_chr11_+_101246960_101247093	0.309251	Gli3_Zic1	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr2_-_125723387_125723537	0.307772	Gli3_Zic1	ENSMUST00000042246.7|Shc4|ENSMUSG00000035109.8|SHC (Src homology 2 domain containing) family, member 4
mm10_v2_chr18_-_38601268_38601355	0.306793	Gli3_Zic1	ENSMUST00000025295.6|Spry4|ENSMUSG00000024427.6|sprouty homolog 4 (Drosophila)
mm10_v2_chr11_+_86544982_86544999	0.305397	Gli3_Zic1	ENSMUST00000108030.2|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1 	ENSMUST00000020821.3|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1 	ENSMUST00000069503.6|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1 	ENSMUST00000167178.2|Tubd1|ENSMUSG00000020513.9|tubulin, delta 1
mm10_v2_chr10_+_126978690_126978749	0.296467	Gli3_Zic1	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr1_+_75360321_75360338	0.294278	Gli3_Zic1	ENSMUST00000027409.9|Des|ENSMUSG00000026208.9|desmin
mm10_v2_chr7_+_45684398_45684429	0.290294	Gli3_Zic1	ENSMUST00000107742.2|Ntn5|ENSMUSG00000070564.7|netrin 5 	ENSMUST00000183120.1|Ntn5|ENSMUSG00000070564.7|netrin 5
mm10_v2_chr16_+_52031549_52031570	0.289125	Gli3_Zic1	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr7_+_135268579_135268619	0.287592	Gli3_Zic1	ENSMUST00000097983.3|Nps|ENSMUSG00000073804.3|neuropeptide S
mm10_v2_chr8_-_105295934_105296098	0.278524	Gli3_Zic1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chrX_-_59567348_59567472	0.274721	Gli3_Zic1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr4_+_48585135_48585187	0.272453	Gli3_Zic1	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr7_+_127485221_127485221	0.268621	Gli3_Zic1	ENSMUST00000048896.6|Fbrs|ENSMUSG00000042423.7|fibrosin
mm10_v2_chr3_-_95357156_95357211	0.267591	Gli3_Zic1	ENSMUST00000107171.3|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000015841.5|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000107170.2|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1
mm10_v2_chr3_+_28263205_28263215	0.267142	Gli3_Zic1	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chr7_-_114636299_114636357	0.258149	Gli3_Zic1	ENSMUST00000032906.4|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha 	ENSMUST00000032907.7|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha
mm10_v2_chr17_-_9669668_9669705	0.257553	Gli3_Zic1	ENSMUST00000057190.2|Pabpc6|ENSMUSG00000046173.2|poly(A) binding protein, cytoplasmic 6
mm10_v2_chr2_-_157135112_157135134	0.253472	Gli3_Zic1	ENSMUST00000139263.1|Samhd1|ENSMUSG00000027639.10|SAM domain and HD domain, 1
mm10_v2_chr1_-_93801840_93801945	0.249254	Gli3_Zic1	ENSMUST00000112890.2|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase 	ENSMUST00000027503.7|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase
mm10_v2_chr17_+_86963077_86963094	0.248304	Gli3_Zic1	ENSMUST00000024956.8|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr5_-_114380459_114380487	0.246167	Gli3_Zic1	ENSMUST00000001125.5|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr11_-_102556122_102556199	0.242975	Gli3_Zic1	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr16_-_33380717_33380755	0.242784	Gli3_Zic1	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chr14_-_37098211_37098311	0.233931	Gli3_Zic1	ENSMUST00000022337.9|Cdhr1|ENSMUSG00000021803.9|cadherin-related family member 1
mm10_v2_chr17_+_37050631_37050674	0.231147	Gli3_Zic1	ENSMUST00000172792.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1 	ENSMUST00000174347.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr5_+_144768536_144768552	0.225425	Gli3_Zic1	ENSMUST00000128550.1|Trrap|ENSMUSG00000045482.9|transformation/transcription domain-associated protein
mm10_v2_chr11_-_109363654_109363654	0.221248	Gli3_Zic1	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr5_-_114380505_114380520	0.219583	Gli3_Zic1	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr12_+_95692212_95692246	0.2174	Gli3_Zic1	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chr7_+_73391160_73391296	0.217016	Gli3_Zic1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr4_-_126202757_126202762	0.215559	Gli3_Zic1	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr17_+_27655643_27655659	0.215493	Gli3_Zic1	ENSMUST00000114872.1|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr17_-_32388885_32389116	0.211264	Gli3_Zic1	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr9_-_44881274_44881323	0.210751	Gli3_Zic1	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr11_+_4135167_4135222	0.207353	Gli3_Zic1	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr10_-_127288999_127289035	0.205416	Gli3_Zic1	ENSMUST00000119078.1|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6
mm10_v2_chr10_-_67548944_67549001	0.203076	Gli3_Zic1	ENSMUST00000075686.4|Ado|ENSMUSG00000057134.4|2-aminoethanethiol (cysteamine) dioxygenase
mm10_v2_chr15_+_78428650_78428671	0.202041	Gli3_Zic1	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr8_+_84415348_84415392	0.191931	Gli3_Zic1	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr8_+_5639514_5639584	0.183643	Gli3_Zic1	ENSMUST00000051687.3|Gm1840|ENSMUSG00000043192.3|predicted gene 1840
mm10_v2_chr7_+_5057161_5057197	0.182702	Gli3_Zic1	ENSMUST00000045543.5|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr11_+_95843226_95843239	0.17408	Gli3_Zic1	ENSMUST00000107709.1|Gngt2|ENSMUSG00000038811.7|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
mm10_v2_chr11_-_119547744_119547759	0.173015	Gli3_Zic1	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr10_+_127063599_127063655	0.171146	Gli3_Zic1	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr4_+_15265798_15265831	0.165734	Gli3_Zic1	ENSMUST00000062684.8|Tmem64|ENSMUSG00000043252.8|transmembrane protein 64
mm10_v2_chr9_-_114026711_114026764	0.165488	Gli3_Zic1	ENSMUST00000117537.1|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2 	ENSMUST00000035090.7|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2
mm10_v2_chr13_-_63431737_63431755	0.165464	Gli3_Zic1	ENSMUST00000073029.5|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr12_+_55565188_55565257	0.164998	Gli3_Zic1	ENSMUST00000080123.1|Aldoart2|ENSMUSG00000063129.1|aldolase 1 A, retrogene 2
mm10_v2_chr8_-_107096510_107096562	0.163077	Gli3_Zic1	ENSMUST00000068388.8|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000133925.1|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000068421.6|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000116425.2|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2
mm10_v2_chr16_-_91011308_91011431	0.161355	Gli3_Zic1	ENSMUST00000121759.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr3_-_30509752_30509822	0.161314	Gli3_Zic1	ENSMUST00000172697.1|Mecom|ENSMUSG00000027684.10|MDS1 and EVI1 complex locus
mm10_v2_chr8_+_13757663_13757714	0.150706	Gli3_Zic1	ENSMUST00000043962.8|Cdc16|ENSMUSG00000038416.8|CDC16 cell division cycle 16
mm10_v2_chr1_+_42697146_42697146	0.150533	Gli3_Zic1	ENSMUST00000054883.2|Pou3f3|ENSMUSG00000045515.2|POU domain, class 3, transcription factor 3
mm10_v2_chr13_-_63565520_63565520	0.149337	Gli3_Zic1	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr11_+_62847062_62847087	0.148575	Gli3_Zic1	ENSMUST00000036085.4|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr2_-_119477613_119477705	0.146952	Gli3_Zic1	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr3_+_95624971_95625021	0.142951	Gli3_Zic1	ENSMUST00000058230.6|Ensa|ENSMUSG00000038619.6|endosulfine alpha 	ENSMUST00000037983.4|Ensa|ENSMUSG00000038619.6|endosulfine alpha
mm10_v2_chr1_+_167001417_167001431	0.138789	Gli3_Zic1	ENSMUST00000165874.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr6_-_113434529_113434613	0.134198	Gli3_Zic1	ENSMUST00000133348.1|Cidec|ENSMUSG00000030278.5|cell death-inducing DFFA-like effector c
mm10_v2_chr13_+_54949388_54949481	0.127379	Gli3_Zic1	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr4_+_117096049_117096083	0.126418	Gli3_Zic1	ENSMUST00000030443.5|Ptch2|ENSMUSG00000028681.5|patched homolog 2
mm10_v2_chr5_+_3343893_3343945	0.125185	Gli3_Zic1	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr2_-_36104060_36104073	0.122054	Gli3_Zic1	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr16_-_20241304_20241363	0.11975	Gli3_Zic1	ENSMUST00000040880.7|Map6d1|ENSMUSG00000041205.7|MAP6 domain containing 1
mm10_v2_chr11_+_85832551_85832551	0.118027	Gli3_Zic1	ENSMUST00000000095.6|Tbx2|ENSMUSG00000000093.6|T-box 2
mm10_v2_chr4_-_133672601_133672652	0.116285	Gli3_Zic1	ENSMUST00000062118.4|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V 	ENSMUST00000067902.6|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V
mm10_v2_chr6_+_115853470_115853598	0.115135	Gli3_Zic1	ENSMUST00000112925.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000112923.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000038234.6|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122
mm10_v2_chr2_-_29055051_29055079	0.113417	Gli3_Zic1	ENSMUST00000113843.1|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene 	ENSMUST00000157048.2|1700101E01Rik|ENSMUSG00000079502.2|RIKEN cDNA 1700101E01 gene
mm10_v2_chr4_-_62208426_62208487	0.11297	Gli3_Zic1	ENSMUST00000068822.3|Zfp37|ENSMUSG00000028389.4|zinc finger protein 37
mm10_v2_chr11_+_69765970_69766027	0.107099	Gli3_Zic1	ENSMUST00000108642.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4 	ENSMUST00000156932.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4
mm10_v2_chr13_-_95618442_95618475	0.0981426	Gli3_Zic1	ENSMUST00000059193.5|F2r|ENSMUSG00000048376.5|coagulation factor II (thrombin) receptor
mm10_v2_chrX_+_101299143_101299201	0.0968278	Gli3_Zic1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr19_-_5106967_5107023	0.0959796	Gli3_Zic1	ENSMUST00000025804.5|Rab1b|ENSMUSG00000024870.5|RAB1B, member RAS oncogene family
mm10_v2_chr17_-_27204357_27204447	0.0951105	Gli3_Zic1	ENSMUST00000055117.7|Lemd2|ENSMUSG00000044857.7|LEM domain containing 2
mm10_v2_chr1_-_134234492_134234578	0.0934987	Gli3_Zic1	ENSMUST00000169927.1|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chrX_-_74393003_74393072	0.0898668	Gli3_Zic1	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr9_+_21165714_21165762	0.0842927	Gli3_Zic1	ENSMUST00000039413.8|Pde4a|ENSMUSG00000032177.10|phosphodiesterase 4A, cAMP specific
mm10_v2_chr11_+_116280939_116280939	0.0798588	Gli3_Zic1	ENSMUST00000055872.2|Galr2|ENSMUSG00000020793.5|galanin receptor 2
mm10_v2_chr2_-_104712122_104712180	0.0791055	Gli3_Zic1	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr3_+_79885930_79886002	0.0730817	Gli3_Zic1	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr4_-_126202335_126202401	0.0718273	Gli3_Zic1	ENSMUST00000142125.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000106141.2|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr9_-_114564315_114564369	0.0713008	Gli3_Zic1	ENSMUST00000111816.2|Trim71|ENSMUSG00000079259.2|tripartite motif-containing 71
mm10_v2_chr3_-_30509681_30509746	0.0708625	Gli3_Zic1	ENSMUST00000173495.1|Mecom|ENSMUSG00000027684.10|MDS1 and EVI1 complex locus
mm10_v2_chrX_+_163908982_163909017	0.0706829	Gli3_Zic1	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr11_+_101246405_101246567	0.0678933	Gli3_Zic1	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr10_+_69533803_69533848	0.0629297	Gli3_Zic1	ENSMUST00000182155.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183169.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183148.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_+_69533761_69533776	0.0611641	Gli3_Zic1	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr17_-_74294834_74294883	0.0605542	Gli3_Zic1	ENSMUST00000078459.6|Memo1|ENSMUSG00000058704.7|mediator of cell motility 1
mm10_v2_chr6_+_125009113_125009179	0.0579693	Gli3_Zic1	ENSMUST00000054553.4|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr17_+_37045963_37045975	0.0554896	Gli3_Zic1	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr16_+_17561885_17562042	0.0543424	Gli3_Zic1	ENSMUST00000171002.1|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6 	ENSMUST00000023441.4|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6
mm10_v2_chr2_+_181520533_181520563	0.0542523	Gli3_Zic1	ENSMUST00000108797.1|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr7_+_12881165_12881204	0.0517059	Gli3_Zic1	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr7_-_135528645_135528661	0.0512277	Gli3_Zic1	ENSMUST00000053716.7|Clrn3|ENSMUSG00000050866.7|clarin 3
mm10_v2_chr10_+_63457505_63457539	0.0500696	Gli3_Zic1	ENSMUST00000105440.1|Ctnna3|ENSMUSG00000060843.5|catenin (cadherin associated protein), alpha 3
mm10_v2_chr13_-_14613017_14613056	0.048888	Gli3_Zic1	ENSMUST00000015816.3|Mrpl32|ENSMUSG00000015672.3|mitochondrial ribosomal protein L32
mm10_v2_chr2_-_181592733_181592803	0.0452797	Gli3_Zic1	ENSMUST00000108789.2|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B 	ENSMUST00000153998.1|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B
mm10_v2_chr9_+_110305185_110305229	0.0437826	Gli3_Zic1	ENSMUST00000068071.7|Elp6|ENSMUSG00000054836.8|elongator acetyltransferase complex subunit 6
mm10_v2_chr19_+_4214238_4214363	0.0435449	Gli3_Zic1	ENSMUST00000046506.6|Clcf1|ENSMUSG00000040663.8|cardiotrophin-like cytokine factor 1
mm10_v2_chr11_+_70647258_70647294	0.0356369	Gli3_Zic1	ENSMUST00000037534.7|Rnf167|ENSMUSG00000040746.9|ring finger protein 167
mm10_v2_chr2_-_9883993_9883993	0.0342194	Gli3_Zic1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr7_+_3390629_3390707	0.0335763	Gli3_Zic1	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr5_-_21055880_21055961	0.0269084	Gli3_Zic1	ENSMUST00000030556.7|Ptpn12|ENSMUSG00000028771.7|protein tyrosine phosphatase, non-receptor type 12
mm10_v2_chr1_-_160077918_160077944	0.0248574	Gli3_Zic1	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr11_-_58801944_58801968	0.0234864	Gli3_Zic1	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr5_+_36204016_36204027	0.0209581	Gli3_Zic1	ENSMUST00000052224.5|Psapl1|ENSMUSG00000043430.5|prosaposin-like 1
mm10_v2_chr13_-_63431683_63431733	0.0197092	Gli3_Zic1	ENSMUST00000160931.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000099444.3|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000161977.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000163091.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr2_-_39190687_39190746	0.015	Gli3_Zic1	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr13_+_74121435_74121515	0.00987601	Gli3_Zic1	ENSMUST00000036208.6|Slc9a3|ENSMUSG00000036123.6|solute carrier family 9 (sodium/hydrogen exchanger), member 3
mm10_v2_chr6_+_125009232_125009253	0.00775648	Gli3_Zic1	ENSMUST00000112428.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr10_+_69534208_69534222	0.00664333	Gli3_Zic1	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr5_+_31297551_31297586	0.00524298	Gli3_Zic1	ENSMUST00000072228.5|Gckr|ENSMUSG00000059434.5|glucokinase regulatory protein
mm10_v2_chr2_+_148681023_148681197	0.00420292	Gli3_Zic1	ENSMUST00000028928.7|Gzf1|ENSMUSG00000027439.9|GDNF-inducible zinc finger protein 1
mm10_v2_chr11_-_69921057_69921085	0.00239862	Gli3_Zic1	ENSMUST00000108609.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108608.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000164359.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr9_-_108578657_108578675	0.000687628	Gli3_Zic1	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
