mm10_v2_chr5_-_53213447_53213473	4.93971	Gli2	ENSMUST00000031090.6|Sel1l3|ENSMUSG00000029189.6|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm10_v2_chr1_-_51915901_51915958	4.65074	Gli2	ENSMUST00000018561.7|Myo1b|ENSMUSG00000018417.8|myosin IB 	ENSMUST00000114537.2|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr1_-_51915968_51916071	4.10924	Gli2	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr4_-_154899077_154899135	4.10152	Gli2	ENSMUST00000030935.3|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B 	ENSMUST00000132281.1|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B
mm10_v2_chr3_+_97628804_97628864	4.02355	Gli2	ENSMUST00000107050.1|Fmo5|ENSMUSG00000028088.8|flavin containing monooxygenase 5 	ENSMUST00000029729.8|Fmo5|ENSMUSG00000028088.8|flavin containing monooxygenase 5 	ENSMUST00000107049.1|Fmo5|ENSMUSG00000028088.8|flavin containing monooxygenase 5
mm10_v2_chr1_-_180199587_180199606	3.82127	Gli2	ENSMUST00000161743.1|Adck3|ENSMUSG00000026489.7|aarF domain containing kinase 3
mm10_v2_chr9_+_107576915_107576990	3.55596	Gli2	ENSMUST00000112387.2|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000123005.1|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000010195.7|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000144392.1|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1
mm10_v2_chr17_-_24209377_24209416	3.4307	Gli2	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr7_-_81454751_81454764	3.41433	Gli2	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr8_+_76902277_76902476	2.88537	Gli2	ENSMUST00000109912.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000128862.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000109911.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr10_-_114801364_114801364	2.58491	Gli2	ENSMUST00000061632.7|Trhde|ENSMUSG00000050663.7|TRH-degrading enzyme
mm10_v2_chr4_-_121098190_121098250	2.56207	Gli2	ENSMUST00000058754.2|Zmpste24|ENSMUSG00000043207.4|zinc metallopeptidase, STE24
mm10_v2_chr12_-_70227622_70227683	2.55684	Gli2	ENSMUST00000071250.6|Pygl|ENSMUSG00000021069.10|liver glycogen phosphorylase
mm10_v2_chr9_+_100643755_100643770	2.52819	Gli2	ENSMUST00000133388.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chrX_+_161717498_161717627	2.51555	Gli2	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr2_+_69897255_69897303	2.4001	Gli2	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr5_-_139819906_139819932	2.3421	Gli2	ENSMUST00000147328.1|Tmem184a|ENSMUSG00000036687.7|transmembrane protein 184a
mm10_v2_chr9_+_100643605_100643626	2.19279	Gli2	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr8_+_127064107_127064347	2.14236	Gli2	ENSMUST00000162536.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000026921.6|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162665.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160766.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162602.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162531.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160581.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000161355.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000159537.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr13_-_54611274_54611297	2.07901	Gli2	ENSMUST00000049575.7|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr8_+_127064022_127064086	2.01376	Gli2	ENSMUST00000160272.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000079777.5|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162907.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr19_-_43674844_43674909	1.94063	Gli2	ENSMUST00000046038.7|Slc25a28|ENSMUSG00000040414.7|solute carrier family 25, member 28
mm10_v2_chr8_+_127063893_127063916	1.94026	Gli2	ENSMUST00000162309.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr4_-_46536096_46536130	1.92356	Gli2	ENSMUST00000102924.2|Trim14|ENSMUSG00000039853.12|tripartite motif-containing 14
mm10_v2_chr9_-_43239816_43239842	1.91904	Gli2	ENSMUST00000034512.5|Oaf|ENSMUSG00000032014.5|OAF homolog (Drosophila)
mm10_v2_chr4_-_46536134_46536143	1.86954	Gli2	ENSMUST00000046897.6|Trim14|ENSMUSG00000039853.12|tripartite motif-containing 14
mm10_v2_chrX_-_9662950_9663003	1.8648	Gli2	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chr6_+_113471481_113471513	1.83382	Gli2	ENSMUST00000113062.1|Il17rc|ENSMUSG00000030281.10|interleukin 17 receptor C
mm10_v2_chr10_+_80151154_80151375	1.81691	Gli2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr16_-_17132377_17132388	1.78608	Gli2	ENSMUST00000023453.7|Sdf2l1|ENSMUSG00000022769.7|stromal cell-derived factor 2-like 1
mm10_v2_chr13_-_54611332_54611387	1.7634	Gli2	ENSMUST00000091609.4|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr11_-_121388186_121388267	1.70276	Gli2	ENSMUST00000106107.2|Rab40b|ENSMUSG00000025170.7|Rab40b, member RAS oncogene family
mm10_v2_chr1_-_90967667_90967667	1.69922	Gli2	ENSMUST00000131428.1|Rab17|ENSMUSG00000026304.7|RAB17, member RAS oncogene family
mm10_v2_chr2_-_157566319_157566361	1.69901	Gli2	ENSMUST00000109528.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human) 	ENSMUST00000088494.2|Blcap|ENSMUSG00000067787.4|bladder cancer associated protein homolog (human)
mm10_v2_chr6_+_113471427_113471475	1.69331	Gli2	ENSMUST00000058300.7|Il17rc|ENSMUSG00000030281.10|interleukin 17 receptor C
mm10_v2_chr9_+_100643448_100643542	1.63773	Gli2	ENSMUST00000146312.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1 	ENSMUST00000129269.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr2_-_121380940_121380947	1.63519	Gli2	ENSMUST00000038389.8|Strc|ENSMUSG00000033498.8|stereocilin
mm10_v2_chr5_-_135962275_135962328	1.60686	Gli2	ENSMUST00000054895.3|Srcrb4d|ENSMUSG00000029699.7|scavenger receptor cysteine rich domain containing, group B (4 domains)
mm10_v2_chr9_+_109095427_109095453	1.54259	Gli2	ENSMUST00000072093.6|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr7_+_35119285_35119301	1.53298	Gli2	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr7_-_144738520_144738597	1.43908	Gli2	ENSMUST00000118556.2|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel 	ENSMUST00000033393.8|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel
mm10_v2_chr19_+_6047081_6047104	1.41156	Gli2	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr2_+_140395309_140395438	1.37702	Gli2	ENSMUST00000110067.1|Macrod2|ENSMUSG00000068205.8|MACRO domain containing 2 	ENSMUST00000110064.1|Macrod2|ENSMUSG00000068205.8|MACRO domain containing 2 	ENSMUST00000110063.1|Macrod2|ENSMUSG00000068205.8|MACRO domain containing 2 	ENSMUST00000110062.1|Macrod2|ENSMUSG00000068205.8|MACRO domain containing 2 	ENSMUST00000078027.5|Macrod2|ENSMUSG00000068205.8|MACRO domain containing 2 	ENSMUST00000043836.7|Macrod2|ENSMUSG00000068205.8|MACRO domain containing 2
mm10_v2_chr7_-_144738478_144738508	1.35414	Gli2	ENSMUST00000121758.1|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel
mm10_v2_chr17_+_28691342_28691399	1.29693	Gli2	ENSMUST00000114758.1|Mapk14|ENSMUSG00000053436.8|mitogen-activated protein kinase 14 	ENSMUST00000004990.6|Mapk14|ENSMUSG00000053436.8|mitogen-activated protein kinase 14 	ENSMUST00000062694.8|Mapk14|ENSMUSG00000053436.8|mitogen-activated protein kinase 14 	ENSMUST00000114754.1|Mapk14|ENSMUSG00000053436.8|mitogen-activated protein kinase 14
mm10_v2_chr2_-_37703275_37703290	1.29001	Gli2	ENSMUST00000072186.5|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr19_+_6047055_6047080	1.2881	Gli2	ENSMUST00000134667.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr7_+_81571246_81571318	1.28095	Gli2	ENSMUST00000165460.1|Whamm|ENSMUSG00000045795.9|WAS protein homolog associated with actin, golgi membranes and microtubules
mm10_v2_chr6_+_43265582_43265681	1.27576	Gli2	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr12_-_31950170_31950197	1.27469	Gli2	ENSMUST00000176520.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chrX_-_74023908_74023918	1.2556	Gli2	ENSMUST00000033769.8|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000114352.1|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000068286.5|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000114360.3|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000114354.3|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1
mm10_v2_chr10_+_83543941_83544007	1.24116	Gli2	ENSMUST00000038388.5|A230046K03Rik|ENSMUSG00000034560.5|RIKEN cDNA A230046K03 gene
mm10_v2_chr1_-_175625580_175625635	1.23992	Gli2	ENSMUST00000027810.7|Fh1|ENSMUSG00000026526.8|fumarate hydratase 1
mm10_v2_chr11_+_29526423_29526474	1.18327	Gli2	ENSMUST00000136351.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000020749.6|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000144321.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2 	ENSMUST00000093239.4|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2
mm10_v2_chrX_-_141725181_141725263	1.16974	Gli2	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr11_+_29526407_29526420	1.1673	Gli2	ENSMUST00000133452.1|Mtif2|ENSMUSG00000020459.8|mitochondrial translational initiation factor 2
mm10_v2_chr7_-_121035096_121035096	1.13707	Gli2	ENSMUST00000065740.2|Gm9905|ENSMUSG00000053358.2|predicted gene 9905
mm10_v2_chr8_-_13890233_13890300	1.13277	Gli2	ENSMUST00000033839.7|Coprs|ENSMUSG00000031458.7|coordinator of PRMT5, differentiation stimulator
mm10_v2_chr15_+_41447438_41447482	1.1309	Gli2	ENSMUST00000110297.2|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1 	ENSMUST00000090096.4|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr7_+_121707189_121707189	1.1189	Gli2	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr7_+_102578469_102578469	1.09382	Gli2	ENSMUST00000098225.2|Olfr550|ENSMUSG00000073975.2|olfactory receptor 550
mm10_v2_chr17_+_28691419_28691445	1.09152	Gli2	ENSMUST00000124886.1|Mapk14|ENSMUSG00000053436.8|mitogen-activated protein kinase 14
mm10_v2_chr4_-_140648736_140648781	1.08988	Gli2	ENSMUST00000039204.3|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000105799.1|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000097820.2|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr5_-_135962265_135962274	1.08639	Gli2	ENSMUST00000111150.1|Srcrb4d|ENSMUSG00000029699.7|scavenger receptor cysteine rich domain containing, group B (4 domains)
mm10_v2_chr2_+_49451486_49451559	1.08211	Gli2	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr7_-_133123312_133123377	1.07319	Gli2	ENSMUST00000171022.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000163601.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000165534.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000124096.1|Fgfr2|ENSMUSG00000030849.11|fibroblast growth factor receptor 2 	ENSMUST00000033269.8|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr9_+_62342449_62342473	1.07181	Gli2	ENSMUST00000156461.1|Anp32a|ENSMUSG00000032249.8|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm10_v2_chr4_+_43401232_43401293	1.05803	Gli2	ENSMUST00000125399.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr4_-_19708922_19709004	1.05519	Gli2	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chrX_+_161717055_161717073	1.04559	Gli2	ENSMUST00000112338.1|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr2_+_130576170_130576176	1.01528	Gli2	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr1_+_167349976_167350065	1.01428	Gli2	ENSMUST00000028004.9|Aldh9a1|ENSMUSG00000026687.9|aldehyde dehydrogenase 9, subfamily A1
mm10_v2_chr12_-_31950210_31950246	0.994694	Gli2	ENSMUST00000176084.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000176103.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000167458.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr2_+_160731684_160731760	0.989551	Gli2	ENSMUST00000174885.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1 	ENSMUST00000109462.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr6_-_124464772_124464794	0.981237	Gli2	ENSMUST00000008297.4|Clstn3|ENSMUSG00000008153.5|calsyntenin 3
mm10_v2_chr11_+_70844745_70844975	0.967146	Gli2	ENSMUST00000076270.6|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000179114.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000100928.4|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000177731.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000108533.3|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000081362.6|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1 	ENSMUST00000178245.1|Rabep1|ENSMUSG00000020817.10|rabaptin, RAB GTPase binding effector protein 1
mm10_v2_chr18_-_35215008_35215033	0.960247	Gli2	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr17_+_24669730_24669752	0.953026	Gli2	ENSMUST00000047179.5|Zfp598|ENSMUSG00000041130.9|zinc finger protein 598
mm10_v2_chr16_-_31314804_31314808	0.925996	Gli2	ENSMUST00000115230.1|Apod|ENSMUSG00000022548.8|apolipoprotein D 	ENSMUST00000130560.1|Apod|ENSMUSG00000022548.8|apolipoprotein D
mm10_v2_chr11_+_72796254_72796268	0.902906	Gli2	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr10_-_34127955_34127980	0.898717	Gli2	ENSMUST00000062784.6|Fam26f|ENSMUSG00000046031.6|family with sequence similarity 26, member F
mm10_v2_chr8_-_67515606_67515606	0.89598	Gli2	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr5_-_71095765_71095862	0.876012	Gli2	ENSMUST00000000572.5|Gabra2|ENSMUSG00000000560.5|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2
mm10_v2_chr11_+_72796164_72796246	0.87416	Gli2	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr11_+_73329727_73329748	0.852883	Gli2	ENSMUST00000092926.4|Spata22|ENSMUSG00000069825.5|spermatogenesis associated 22 	ENSMUST00000117445.1|Spata22|ENSMUSG00000069825.5|spermatogenesis associated 22
mm10_v2_chr7_-_116308241_116308376	0.846502	Gli2	ENSMUST00000183057.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7 	ENSMUST00000182487.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7 	ENSMUST00000181998.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7
mm10_v2_chr8_+_85060055_85060135	0.836642	Gli2	ENSMUST00000095220.3|Fbxw9|ENSMUSG00000008167.8|F-box and WD-40 domain protein 9
mm10_v2_chr5_-_134456227_134456263	0.819147	Gli2	ENSMUST00000111244.1|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr2_+_164486455_164486655	0.818327	Gli2	ENSMUST00000069385.8|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENSMUST00000143690.1|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr7_-_137314394_137314445	0.810969	Gli2	ENSMUST00000168203.1|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000106118.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000169486.2|Ebf3|ENSMUSG00000010476.7|early B cell factor 3 	ENSMUST00000033378.5|Ebf3|ENSMUSG00000010476.7|early B cell factor 3
mm10_v2_chr9_+_45055211_45055225	0.806656	Gli2	ENSMUST00000114663.2|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr9_+_55149364_55149395	0.796937	Gli2	ENSMUST00000121677.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chrX_-_95956890_95956918	0.796787	Gli2	ENSMUST00000079987.6|Las1l|ENSMUSG00000057421.6|LAS1-like (S. cerevisiae) 	ENSMUST00000113864.2|Las1l|ENSMUSG00000057421.6|LAS1-like (S. cerevisiae)
mm10_v2_chr11_+_95712673_95712673	0.753637	Gli2	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr18_+_61555689_61555751	0.751974	Gli2	ENSMUST00000167187.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1
mm10_v2_chr17_-_34214459_34214486	0.747718	Gli2	ENSMUST00000121995.1|Gm15821|ENSMUSG00000081512.1|predicted gene 15821
mm10_v2_chr18_+_38250240_38250287	0.745982	Gli2	ENSMUST00000025314.5|0610009O20Rik|ENSMUSG00000024442.5|RIKEN cDNA 0610009O20 gene
mm10_v2_chr4_-_126256226_126256370	0.739129	Gli2	ENSMUST00000122129.1|Map7d1|ENSMUSG00000028849.11|MAP7 domain containing 1 	ENSMUST00000061143.8|Map7d1|ENSMUSG00000028849.11|MAP7 domain containing 1 	ENSMUST00000106132.2|Map7d1|ENSMUSG00000028849.11|MAP7 domain containing 1
mm10_v2_chr3_+_94837533_94837567	0.729133	Gli2	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr2_-_120609500_120609524	0.71791	Gli2	ENSMUST00000133612.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57 	ENSMUST00000102498.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57 	ENSMUST00000102499.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr10_+_76531593_76531635	0.711204	Gli2	ENSMUST00000048678.6|Lss|ENSMUSG00000033105.6|lanosterol synthase
mm10_v2_chr17_+_24632671_24632712	0.710653	Gli2	ENSMUST00000047611.2|Nthl1|ENSMUSG00000041429.2|nth (endonuclease III)-like 1 (E.coli)
mm10_v2_chr3_+_127633134_127633140	0.709539	Gli2	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr5_-_24527276_24527276	0.706274	Gli2	ENSMUST00000088311.4|Gbx1|ENSMUSG00000067724.4|gastrulation brain homeobox 1
mm10_v2_chr2_-_120609319_120609380	0.66464	Gli2	ENSMUST00000102497.3|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr8_-_27174623_27174651	0.637202	Gli2	ENSMUST00000033878.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I) 	ENSMUST00000054212.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I)
mm10_v2_chr15_-_78718113_78718113	0.608486	Gli2	ENSMUST00000088592.4|Elfn2|ENSMUSG00000043460.6|leucine rich repeat and fibronectin type III, extracellular 2
mm10_v2_chr14_+_25607797_25607838	0.607925	Gli2	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr8_+_70754679_70754751	0.60267	Gli2	ENSMUST00000110093.2|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family 	ENSMUST00000143118.1|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family 	ENSMUST00000034301.5|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family 	ENSMUST00000110090.1|Rab3a|ENSMUSG00000031840.6|RAB3A, member RAS oncogene family
mm10_v2_chr17_-_25497288_25497288	0.592389	Gli2	ENSMUST00000165183.2|Sstr5|ENSMUSG00000050824.5|somatostatin receptor 5 	ENSMUST00000051864.4|Sstr5|ENSMUSG00000050824.5|somatostatin receptor 5
mm10_v2_chr16_-_4077778_4077831	0.59084	Gli2	ENSMUST00000006137.8|Trap1|ENSMUSG00000005981.11|TNF receptor-associated protein 1
mm10_v2_chr14_-_64949838_64949886	0.583473	Gli2	ENSMUST00000067843.3|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176489.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175905.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000022544.7|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175744.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176128.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1
mm10_v2_chr11_-_94704499_94704499	0.583017	Gli2	ENSMUST00000069852.1|Gm11541|ENSMUSG00000056008.1|predicted gene 11541
mm10_v2_chr10_-_17947997_17948098	0.57437	Gli2	ENSMUST00000037879.6|Heca|ENSMUSG00000039879.8|headcase homolog (Drosophila)
mm10_v2_chr19_-_8880883_8880933	0.574264	Gli2	ENSMUST00000096253.5|AI462493|ENSMUSG00000071654.5|expressed sequence AI462493
mm10_v2_chr11_+_116030304_116030385	0.553682	Gli2	ENSMUST00000021116.5|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila) 	ENSMUST00000106452.1|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila)
mm10_v2_chr10_-_127263346_127263368	0.549449	Gli2	ENSMUST00000099172.3|Kif5a|ENSMUSG00000074657.4|kinesin family member 5A
mm10_v2_chr9_+_45055166_45055195	0.539694	Gli2	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr4_-_135971894_135971929	0.534462	Gli2	ENSMUST00000105852.1|Lypla2|ENSMUSG00000028670.8|lysophospholipase 2
mm10_v2_chr2_+_121956411_121956480	0.532819	Gli2	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr17_-_56609689_56609771	0.530728	Gli2	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chr2_-_120609283_120609317	0.523014	Gli2	ENSMUST00000102496.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr8_+_107436355_107436421	0.515397	Gli2	ENSMUST00000166615.1|Wwp2|ENSMUSG00000031930.10|WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chrX_-_167382747_167382760	0.514729	Gli2	ENSMUST00000026839.4|Prps2|ENSMUSG00000025742.5|phosphoribosyl pyrophosphate synthetase 2
mm10_v2_chr9_+_107928440_107928483	0.508714	Gli2	ENSMUST00000085073.1|Actl11|ENSMUSG00000066368.1|actin-like 11
mm10_v2_chr11_-_68871848_68871858	0.504753	Gli2	ENSMUST00000101017.2|Ndel1|ENSMUSG00000018736.8|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm10_v2_chr11_-_107794557_107794729	0.50216	Gli2	ENSMUST00000021066.3|Cacng4|ENSMUSG00000020723.3|calcium channel, voltage-dependent, gamma subunit 4
mm10_v2_chr11_+_117308135_117308158	0.499086	Gli2	ENSMUST00000153668.1|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr7_-_65371210_65371287	0.490818	Gli2	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr11_+_115912001_115912025	0.488365	Gli2	ENSMUST00000132961.1|Smim6|ENSMUSG00000075420.6|small integral membrane protein 6
mm10_v2_chr2_+_120609383_120609400	0.474027	Gli2	ENSMUST00000124187.1|Haus2|ENSMUSG00000027285.7|HAUS augmin-like complex, subunit 2
mm10_v2_chr11_-_42000532_42000592	0.465289	Gli2	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr12_+_72085847_72085864	0.411666	Gli2	ENSMUST00000117449.1|Jkamp|ENSMUSG00000005078.10|JNK1/MAPK8-associated membrane protein 	ENSMUST00000057257.8|Jkamp|ENSMUSG00000005078.10|JNK1/MAPK8-associated membrane protein
mm10_v2_chr3_+_95427575_95427671	0.408649	Gli2	ENSMUST00000181809.1|Gm4349|ENSMUSG00000097532.1|predicted gene 4349
mm10_v2_chr4_+_155831630_155831698	0.407224	Gli2	ENSMUST00000105592.1|Aurkaip1|ENSMUSG00000065990.6|aurora kinase A interacting protein 1 	ENSMUST00000105591.1|Aurkaip1|ENSMUSG00000065990.6|aurora kinase A interacting protein 1
mm10_v2_chr8_+_119612747_119612747	0.404125	Gli2	ENSMUST00000098361.2|Adad2|ENSMUSG00000024266.7|adenosine deaminase domain containing 2
mm10_v2_chr11_-_42000284_42000356	0.399554	Gli2	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr11_+_70562898_70562922	0.385977	Gli2	ENSMUST00000102559.4|Mink1|ENSMUSG00000020827.12|misshapen-like kinase 1 (zebrafish)
mm10_v2_chr12_-_31950535_31950560	0.385304	Gli2	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr16_-_88056176_88056176	0.364256	Gli2	ENSMUST00000072256.5|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000023652.8|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000114137.1|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1
mm10_v2_chr3_-_135608221_135608290	0.356919	Gli2	ENSMUST00000132668.1|Nfkb1|ENSMUSG00000028163.11|nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
mm10_v2_chr11_+_75532127_75532151	0.350903	Gli2	ENSMUST00000127226.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr9_-_69760924_69760940	0.336825	Gli2	ENSMUST00000071281.4|Foxb1|ENSMUSG00000059246.4|forkhead box B1
mm10_v2_chrX_+_99003224_99003288	0.322322	Gli2	ENSMUST00000149999.1|Stard8|ENSMUSG00000031216.7|START domain containing 8
mm10_v2_chr18_+_61555258_61555290	0.321914	Gli2	ENSMUST00000165123.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1
mm10_v2_chrX_+_137049586_137049654	0.298942	Gli2	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr1_+_71652837_71652837	0.298284	Gli2	ENSMUST00000097699.2|Apol7d|ENSMUSG00000073652.4|apolipoprotein L 7d
mm10_v2_chr7_+_141328122_141328139	0.296706	Gli2	ENSMUST00000133012.1|Tmem80|ENSMUSG00000025505.10|transmembrane protein 80 	ENSMUST00000026578.7|Tmem80|ENSMUSG00000025505.10|transmembrane protein 80
mm10_v2_chr18_+_61555308_61555345	0.28991	Gli2	ENSMUST00000165721.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1 	ENSMUST00000115246.2|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1 	ENSMUST00000166990.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1 	ENSMUST00000163205.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1 	ENSMUST00000170862.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1
mm10_v2_chr6_+_120666388_120666424	0.278114	Gli2	ENSMUST00000112686.1|Cecr2|ENSMUSG00000071226.5|cat eye syndrome chromosome region, candidate 2
mm10_v2_chr5_-_20882072_20882124	0.268611	Gli2	ENSMUST00000118174.1|Phtf2|ENSMUSG00000039987.9|putative homeodomain transcription factor 2
mm10_v2_chr3_+_9250602_9250602	0.264526	Gli2	ENSMUST00000155203.1|Zbtb10|ENSMUSG00000069114.8|zinc finger and BTB domain containing 10
mm10_v2_chr1_-_72536930_72536999	0.254677	Gli2	ENSMUST00000047786.5|March4|ENSMUSG00000039372.5|membrane-associated ring finger (C3HC4) 4
mm10_v2_chr1_-_119997211_119997249	0.24331	Gli2	ENSMUST00000174458.1|Gm101|ENSMUSG00000036962.6|predicted gene 101
mm10_v2_chr12_-_69357120_69357181	0.242079	Gli2	ENSMUST00000021368.8|Nemf|ENSMUSG00000020982.8|nuclear export mediator factor
mm10_v2_chr7_+_12881165_12881204	0.217806	Gli2	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr4_+_117096049_117096083	0.196278	Gli2	ENSMUST00000030443.5|Ptch2|ENSMUSG00000028681.5|patched homolog 2
mm10_v2_chr17_-_84187939_84187954	0.146799	Gli2	ENSMUST00000060366.6|Zfp36l2|ENSMUSG00000045817.8|zinc finger protein 36, C3H type-like 2
mm10_v2_chr12_+_58211772_58211804	0.146102	Gli2	ENSMUST00000110671.2|Sstr1|ENSMUSG00000035431.4|somatostatin receptor 1 	ENSMUST00000044299.2|Sstr1|ENSMUSG00000035431.4|somatostatin receptor 1
mm10_v2_chr7_-_133123409_133123472	0.144776	Gli2	ENSMUST00000170459.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000166400.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr2_-_104712122_104712180	0.14233	Gli2	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr9_-_108578657_108578675	0.123462	Gli2	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr4_-_83486178_83486276	0.11977	Gli2	ENSMUST00000130626.1|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1
mm10_v2_chr9_+_114401076_114401133	0.106468	Gli2	ENSMUST00000063042.9|Glb1|ENSMUSG00000045594.9|galactosidase, beta 1 	ENSMUST00000111820.2|Tmppe|ENSMUSG00000079260.2|transmembrane protein with metallophosphoesterase domain
mm10_v2_chr15_-_77970750_77970824	0.100053	Gli2	ENSMUST00000100484.4|Eif3d|ENSMUSG00000016554.8|eukaryotic translation initiation factor 3, subunit D
mm10_v2_chr7_-_133122615_133122762	0.0803293	Gli2	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr10_-_99126321_99126321	0.0735376	Gli2	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr2_-_120563795_120563878	0.0346092	Gli2	ENSMUST00000055241.6|Zfp106|ENSMUSG00000027288.10|zinc finger protein 106 	ENSMUST00000135625.1|Zfp106|ENSMUSG00000027288.10|zinc finger protein 106
mm10_v2_chr17_+_68837062_68837136	0.0334915	Gli2	ENSMUST00000178545.1|Tmem200c|ENSMUSG00000095407.1|transmembrane protein 200C
mm10_v2_chr5_-_137786651_137786668	0.0201888	Gli2	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr10_+_42502030_42502041	0.0158884	Gli2	ENSMUST00000105500.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3 	ENSMUST00000019939.5|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr4_+_32800246_32800289	0.00619327	Gli2	ENSMUST00000062802.4|Lyrm2|ENSMUSG00000045854.4|LYR motif containing 2
