mm10_v2_chr7_+_24370255_24370312	1.44924	Gli1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr11_+_115899943_115899966	1.41025	Gli1	ENSMUST00000152171.1|Smim5|ENSMUSG00000048442.9|small integral membrane protein 5
mm10_v2_chr4_+_154869585_154869636	1.34983	Gli1	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr1_-_133801031_133801041	1.29738	Gli1	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr6_-_122609964_122610087	1.21712	Gli1	ENSMUST00000032211.4|Gdf3|ENSMUSG00000030117.4|growth differentiation factor 3
mm10_v2_chr11_-_102365111_102365280	1.15528	Gli1	ENSMUST00000006749.9|Slc4a1|ENSMUSG00000006574.9|solute carrier family 4 (anion exchanger), member 1
mm10_v2_chr18_+_61687911_61687935	1.01943	Gli1	ENSMUST00000025471.2|Il17b|ENSMUSG00000024578.2|interleukin 17B
mm10_v2_chr17_-_45733843_45733848	1.00227	Gli1	ENSMUST00000178179.1|1600014C23Rik|ENSMUSG00000094690.1|RIKEN cDNA 1600014C23 gene
mm10_v2_chr17_-_24209377_24209416	0.996452	Gli1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr6_-_52218686_52218716	0.987604	Gli1	ENSMUST00000134367.2|Hoxa7|ENSMUSG00000038236.6|homeobox A7
mm10_v2_chr4_-_133874682_133874731	0.846421	Gli1	ENSMUST00000168974.2|Rps6ka1|ENSMUSG00000003644.11|ribosomal protein S6 kinase polypeptide 1
mm10_v2_chr8_+_121127827_121127940	0.837802	Gli1	ENSMUST00000181609.1|Foxl1|ENSMUSG00000097084.1|forkhead box L1
mm10_v2_chrX_-_59568068_59568094	0.83421	Gli1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr13_+_6548154_6548174	0.832461	Gli1	ENSMUST00000021611.8|Pitrm1|ENSMUSG00000021193.9|pitrilysin metallepetidase 1
mm10_v2_chrX_+_159303266_159303281	0.827046	Gli1	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr4_+_45184815_45184906	0.800327	Gli1	ENSMUST00000134280.1|Frmpd1|ENSMUSG00000035615.6|FERM and PDZ domain containing 1 	ENSMUST00000044773.5|Frmpd1|ENSMUSG00000035615.6|FERM and PDZ domain containing 1
mm10_v2_chr2_-_152830615_152830680	0.799864	Gli1	ENSMUST00000146380.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134902.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134357.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000109820.3|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr1_+_129273344_129273470	0.79934	Gli1	ENSMUST00000073527.6|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B 	ENSMUST00000040311.7|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B
mm10_v2_chr2_+_119351222_119351233	0.784882	Gli1	ENSMUST00000028780.3|Chac1|ENSMUSG00000027313.3|ChaC, cation transport regulator 1
mm10_v2_chr11_+_72999069_72999103	0.779154	Gli1	ENSMUST00000021141.7|P2rx1|ENSMUSG00000020787.8|purinergic receptor P2X, ligand-gated ion channel, 1
mm10_v2_chr15_-_103310425_103310444	0.752001	Gli1	ENSMUST00000079824.4|Gpr84|ENSMUSG00000063234.4|G protein-coupled receptor 84
mm10_v2_chr2_+_118111876_118111899	0.734855	Gli1	ENSMUST00000039559.8|Thbs1|ENSMUSG00000040152.8|thrombospondin 1
mm10_v2_chr13_-_117025505_117025541	0.686797	Gli1	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr8_+_70501116_70501172	0.684289	Gli1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr3_+_95929246_95929298	0.669072	Gli1	ENSMUST00000165307.1|Anp32e|ENSMUSG00000015749.6|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENSMUST00000015893.6|Anp32e|ENSMUSG00000015749.6|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm10_v2_chr13_+_44729535_44729697	0.650248	Gli1	ENSMUST00000174068.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chrX_-_167382747_167382760	0.647947	Gli1	ENSMUST00000026839.4|Prps2|ENSMUSG00000025742.5|phosphoribosyl pyrophosphate synthetase 2
mm10_v2_chr7_-_118443549_118443571	0.643353	Gli1	ENSMUST00000081574.4|Syt17|ENSMUSG00000058420.5|synaptotagmin XVII
mm10_v2_chr2_+_29890534_29890545	0.635463	Gli1	ENSMUST00000113764.3|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr3_+_95929325_95929386	0.633703	Gli1	ENSMUST00000171368.1|Anp32e|ENSMUSG00000015749.6|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENSMUST00000168106.1|Anp32e|ENSMUSG00000015749.6|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm10_v2_chrX_+_140956892_140956923	0.629824	Gli1	ENSMUST00000112971.1|Atg4a|ENSMUSG00000079418.3|autophagy related 4A, cysteine peptidase
mm10_v2_chr13_+_109685994_109686156	0.613141	Gli1	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr11_+_96282648_96282725	0.611176	Gli1	ENSMUST00000168043.1|Hoxb8|ENSMUSG00000056648.4|homeobox B8
mm10_v2_chr15_-_56694525_56694554	0.607227	Gli1	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr11_+_9191934_9191948	0.603283	Gli1	ENSMUST00000042740.6|Abca13|ENSMUSG00000004668.8|ATP-binding cassette, sub-family A (ABC1), member 13
mm10_v2_chr2_-_32083783_32083796	0.587417	Gli1	ENSMUST00000056406.6|Fam78a|ENSMUSG00000050592.8|family with sequence similarity 78, member A
mm10_v2_chr11_+_77009265_77009280	0.587107	Gli1	ENSMUST00000129572.2|Slc6a4|ENSMUSG00000020838.6|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
mm10_v2_chr1_-_167466780_167466780	0.587008	Gli1	ENSMUST00000036643.4|Lrrc52|ENSMUSG00000040485.4|leucine rich repeat containing 52
mm10_v2_chr2_+_29889785_29889895	0.578411	Gli1	ENSMUST00000113763.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113757.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113756.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000133233.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113759.2|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113755.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000137558.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000046571.7|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr11_+_73240310_73240310	0.568717	Gli1	ENSMUST00000138853.1|Trpv1|ENSMUSG00000005952.9|transient receptor potential cation channel, subfamily V, member 1
mm10_v2_chr6_-_41636389_41636409	0.563442	Gli1	ENSMUST00000031902.5|Trpv6|ENSMUSG00000029868.8|transient receptor potential cation channel, subfamily V, member 6
mm10_v2_chr2_-_152831112_152831326	0.561746	Gli1	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chrX_+_103321398_103321398	0.536044	Gli1	ENSMUST00000033689.2|Cdx4|ENSMUSG00000031326.2|caudal type homeobox 4
mm10_v2_chr2_+_29890096_29890156	0.533251	Gli1	ENSMUST00000113762.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113765.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chrX_-_59567348_59567472	0.531573	Gli1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr6_+_113531675_113531721	0.517581	Gli1	ENSMUST00000036340.5|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2 	ENSMUST00000101051.2|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2
mm10_v2_chr4_-_148130678_148130706	0.501856	Gli1	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr2_+_29890063_29890081	0.49175	Gli1	ENSMUST00000028128.6|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr8_-_64733534_64733554	0.487668	Gli1	ENSMUST00000141021.1|Sc4mol|ENSMUSG00000031604.4|sterol-C4-methyl oxidase-like
mm10_v2_chr18_-_70141568_70141622	0.45577	Gli1	ENSMUST00000121693.1|Rab27b|ENSMUSG00000024511.9|RAB27b, member RAS oncogene family
mm10_v2_chr2_-_59948155_59948216	0.450357	Gli1	ENSMUST00000153136.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr2_+_29889720_29889753	0.448972	Gli1	ENSMUST00000113767.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr11_-_34833631_34833663	0.447195	Gli1	ENSMUST00000093191.2|Spdl1|ENSMUSG00000069910.2|spindle apparatus coiled-coil protein 1
mm10_v2_chr7_-_44227421_44227421	0.440172	Gli1	ENSMUST00000072123.4|Gm10109|ENSMUSG00000062073.5|predicted gene 10109
mm10_v2_chr15_-_95528702_95528777	0.437903	Gli1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr18_-_35662180_35662195	0.428963	Gli1	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr16_-_91011029_91011069	0.426951	Gli1	ENSMUST00000130813.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr16_-_91011093_91011113	0.416962	Gli1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr7_-_6331235_6331290	0.41417	Gli1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr4_+_118428078_118428194	0.400167	Gli1	ENSMUST00000006557.6|Elovl1|ENSMUSG00000006390.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 	ENSMUST00000167636.1|Elovl1|ENSMUSG00000006390.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 	ENSMUST00000102673.4|Elovl1|ENSMUSG00000006390.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm10_v2_chr5_-_110779937_110779967	0.395153	Gli1	ENSMUST00000112426.1|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1
mm10_v2_chr7_+_28982832_28982892	0.389668	Gli1	ENSMUST00000085835.6|Map4k1|ENSMUSG00000037337.10|mitogen-activated protein kinase kinase kinase kinase 1
mm10_v2_chr16_-_56024628_56024668	0.380644	Gli1	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr7_+_27499315_27499331	0.375184	Gli1	ENSMUST00000098644.2|Prx|ENSMUSG00000053198.7|periaxin 	ENSMUST00000108355.1|Prx|ENSMUSG00000053198.7|periaxin
mm10_v2_chr6_-_148944750_148944826	0.367096	Gli1	ENSMUST00000111562.1|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A 	ENSMUST00000081956.5|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A
mm10_v2_chr6_-_52246214_52246214	0.353963	Gli1	ENSMUST00000048026.8|Hoxa11|ENSMUSG00000038210.9|homeobox A11
mm10_v2_chr17_+_86963279_86963303	0.351163	Gli1	ENSMUST00000139344.1|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr11_+_20543307_20543336	0.339747	Gli1	ENSMUST00000093292.4|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr9_-_82975475_82975493	0.334172	Gli1	ENSMUST00000034787.5|Phip|ENSMUSG00000032253.7|pleckstrin homology domain interacting protein
mm10_v2_chr5_-_115300912_115300944	0.334117	Gli1	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr7_-_24760311_24760327	0.324611	Gli1	ENSMUST00000063956.5|Cd177|ENSMUSG00000052212.5|CD177 antigen
mm10_v2_chrX_+_101299143_101299201	0.321841	Gli1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chrX_+_137049586_137049654	0.320818	Gli1	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr5_-_115300957_115300999	0.310832	Gli1	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr8_-_120177440_120177478	0.308603	Gli1	ENSMUST00000048786.6|Fam92b|ENSMUSG00000042269.9|family with sequence similarity 92, member B
mm10_v2_chr9_+_55149364_55149395	0.303248	Gli1	ENSMUST00000121677.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chr11_-_45955183_45955193	0.300592	Gli1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr9_+_118506226_118506318	0.299612	Gli1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr15_-_95528228_95528266	0.294108	Gli1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr15_-_100669496_100669511	0.293799	Gli1	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr13_+_35741313_35741385	0.29293	Gli1	ENSMUST00000163595.2|Cdyl|ENSMUSG00000059288.7|chromodomain protein, Y chromosome-like
mm10_v2_chr11_+_51619731_51619813	0.290787	Gli1	ENSMUST00000127405.1|Nhp2|ENSMUSG00000001056.3|NHP2 ribonucleoprotein
mm10_v2_chr2_+_106693185_106693278	0.290125	Gli1	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr6_+_67115671_67115708	0.289873	Gli1	ENSMUST00000181304.1|A430010J10Rik|ENSMUSG00000097603.1|RIKEN cDNA A430010J10 gene
mm10_v2_chr17_-_25727364_25727426	0.282716	Gli1	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr6_+_28423539_28423640	0.281462	Gli1	ENSMUST00000020717.5|Arf5|ENSMUSG00000020440.7|ADP-ribosylation factor 5 	ENSMUST00000169841.1|Arf5|ENSMUSG00000020440.7|ADP-ribosylation factor 5
mm10_v2_chr19_+_11404735_11404770	0.277031	Gli1	ENSMUST00000153546.1|Ms4a4c|ENSMUSG00000024675.13|membrane-spanning 4-domains, subfamily A, member 4C
mm10_v2_chr6_+_30738044_30738059	0.276385	Gli1	ENSMUST00000128398.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000163949.2|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000124665.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr15_-_100669512_100669529	0.276128	Gli1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr2_+_105127200_105127222	0.269888	Gli1	ENSMUST00000139585.1|Wt1|ENSMUSG00000016458.7|Wilms tumor 1 homolog
mm10_v2_chr3_-_92485886_92485901	0.269689	Gli1	ENSMUST00000054599.7|Sprr1a|ENSMUSG00000050359.7|small proline-rich protein 1A
mm10_v2_chr11_+_60479915_60479915	0.267921	Gli1	ENSMUST00000126522.1|Myo15|ENSMUSG00000042678.10|myosin XV
mm10_v2_chr8_+_13757663_13757714	0.266416	Gli1	ENSMUST00000043962.8|Cdc16|ENSMUSG00000038416.8|CDC16 cell division cycle 16
mm10_v2_chr5_+_5573952_5574013	0.263383	Gli1	ENSMUST00000101627.2|Gm8773|ENSMUSG00000073234.2|predicted gene 8773
mm10_v2_chr13_+_81783220_81783307	0.263279	Gli1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr14_+_25607797_25607838	0.262131	Gli1	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr2_+_157560078_157560130	0.261479	Gli1	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr15_-_78544345_78544345	0.261415	Gli1	ENSMUST00000053239.2|Sstr3|ENSMUSG00000044933.2|somatostatin receptor 3
mm10_v2_chr13_+_118714678_118714701	0.257614	Gli1	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chrX_+_155262443_155262481	0.251759	Gli1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr15_-_51991679_51991760	0.246457	Gli1	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr17_-_89910449_89910449	0.242089	Gli1	ENSMUST00000086423.4|Gm10184|ENSMUSG00000066878.4|predicted pseudogene 10184
mm10_v2_chr11_+_62847111_62847132	0.231839	Gli1	ENSMUST00000150989.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10 	ENSMUST00000176577.1|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr11_+_62847062_62847087	0.231039	Gli1	ENSMUST00000036085.4|Fbxw10|ENSMUSG00000090173.2|F-box and WD-40 domain protein 10
mm10_v2_chr1_-_64121456_64121491	0.2309	Gli1	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr7_-_102494773_102494773	0.227107	Gli1	ENSMUST00000058750.3|Olfr545|ENSMUSG00000044824.5|olfactory receptor 545
mm10_v2_chr4_+_12089373_12089441	0.225976	Gli1	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr11_+_23306910_23306937	0.225671	Gli1	ENSMUST00000137823.1|Usp34|ENSMUSG00000056342.10|ubiquitin specific peptidase 34
mm10_v2_chr1_+_133350510_133350510	0.22484	Gli1	ENSMUST00000094556.2|Ren1|ENSMUSG00000070645.5|renin 1 structural
mm10_v2_chr2_-_103797617_103797662	0.223223	Gli1	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr11_-_83462961_83463071	0.222541	Gli1	ENSMUST00000021020.6|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000119346.1|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000103209.3|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin) 	ENSMUST00000108137.2|Mmp28|ENSMUSG00000020682.11|matrix metallopeptidase 28 (epilysin)
mm10_v2_chr17_-_32403526_32403537	0.219616	Gli1	ENSMUST00000137458.1|Rasal3|ENSMUSG00000052142.9|RAS protein activator like 3
mm10_v2_chr2_+_155013531_155013561	0.21481	Gli1	ENSMUST00000029123.2|a|ENSMUSG00000027596.4|nonagouti
mm10_v2_chr11_+_23306884_23306906	0.214446	Gli1	ENSMUST00000180046.1|Usp34|ENSMUSG00000056342.10|ubiquitin specific peptidase 34
mm10_v2_chr4_+_114821722_114821722	0.208086	Gli1	ENSMUST00000137570.1|Gm12830|ENSMUSG00000055198.3|predicted gene 12830
mm10_v2_chr11_-_45955465_45955494	0.205527	Gli1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr4_+_139193996_139194133	0.203552	Gli1	ENSMUST00000030518.9|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta
mm10_v2_chr17_-_32403551_32403590	0.19982	Gli1	ENSMUST00000135618.1|Rasal3|ENSMUSG00000052142.9|RAS protein activator like 3 	ENSMUST00000063824.7|Rasal3|ENSMUSG00000052142.9|RAS protein activator like 3
mm10_v2_chr10_+_80249106_80249124	0.197915	Gli1	ENSMUST00000105364.1|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chrX_-_140956675_140956728	0.195929	Gli1	ENSMUST00000033805.8|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 	ENSMUST00000112978.1|Psmd10|ENSMUSG00000031429.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm10_v2_chr10_-_63421739_63421739	0.193195	Gli1	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr4_-_117682233_117682279	0.18658	Gli1	ENSMUST00000102687.3|Dmap1|ENSMUSG00000009640.5|DNA methyltransferase 1-associated protein 1
mm10_v2_chr12_-_103338314_103338399	0.182913	Gli1	ENSMUST00000149431.1|Asb2|ENSMUSG00000021200.8|ankyrin repeat and SOCS box-containing 2
mm10_v2_chr13_+_5861489_5861501	0.182138	Gli1	ENSMUST00000000080.6|Klf6|ENSMUSG00000000078.6|Kruppel-like factor 6
mm10_v2_chr4_-_40948196_40948296	0.18036	Gli1	ENSMUST00000030125.4|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1 	ENSMUST00000108089.1|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1
mm10_v2_chr3_+_45378396_45378413	0.179006	Gli1	ENSMUST00000166126.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000170695.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000171554.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10
mm10_v2_chr9_-_54661666_54661716	0.176606	Gli1	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chrX_+_101299207_101299218	0.175813	Gli1	ENSMUST00000065858.2|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr2_+_119034783_119034869	0.171663	Gli1	ENSMUST00000028796.1|Rpusd2|ENSMUSG00000027324.1|RNA pseudouridylate synthase domain containing 2
mm10_v2_chr7_+_80186835_80186904	0.169615	Gli1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr10_+_79777261_79777280	0.168512	Gli1	ENSMUST00000020575.4|Fstl3|ENSMUSG00000020325.10|follistatin-like 3
mm10_v2_chr11_-_42000284_42000356	0.167315	Gli1	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr1_-_192834719_192834719	0.162626	Gli1	ENSMUST00000057543.2|A730013G03Rik|ENSMUSG00000047384.2|RIKEN cDNA A730013G03 gene
mm10_v2_chr8_-_105966038_105966120	0.156093	Gli1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr11_-_98149551_98149621	0.152302	Gli1	ENSMUST00000103143.3|Fbxl20|ENSMUSG00000020883.12|F-box and leucine-rich repeat protein 20
mm10_v2_chr7_-_140950236_140950257	0.146878	Gli1	ENSMUST00000026562.4|Ifitm5|ENSMUSG00000025489.4|interferon induced transmembrane protein 5
mm10_v2_chr11_-_42000532_42000592	0.146	Gli1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr2_-_164071089_164071118	0.14488	Gli1	ENSMUST00000018466.3|Tomm34|ENSMUSG00000018322.4|translocase of outer mitochondrial membrane 34
mm10_v2_chr11_+_97840780_97840780	0.142104	Gli1	ENSMUST00000054783.4|B230217C12Rik|ENSMUSG00000089676.3|RIKEN cDNA B230217C12 gene
mm10_v2_chr2_-_93046053_93046172	0.141854	Gli1	ENSMUST00000111272.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000178666.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000147339.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11
mm10_v2_chr4_-_154899077_154899135	0.138494	Gli1	ENSMUST00000030935.3|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B 	ENSMUST00000132281.1|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B
mm10_v2_chr10_+_69534208_69534222	0.138424	Gli1	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr5_-_122900267_122900377	0.134952	Gli1	ENSMUST00000031435.7|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr11_-_61494173_61494296	0.134654	Gli1	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr14_-_54409469_54409477	0.13161	Gli1	ENSMUST00000000984.4|Slc7a7|ENSMUSG00000000958.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm10_v2_chr10_+_22645011_22645109	0.131494	Gli1	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr2_+_155013430_155013472	0.116835	Gli1	ENSMUST00000148402.1|a|ENSMUSG00000027596.4|nonagouti
mm10_v2_chr2_+_181497223_181497244	0.11667	Gli1	ENSMUST00000108799.3|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr4_-_41275091_41275144	0.113693	Gli1	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr1_-_64121389_64121452	0.109401	Gli1	ENSMUST00000055001.3|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr12_-_81333129_81333220	0.108183	Gli1	ENSMUST00000085238.6|Slc8a3|ENSMUSG00000079055.4|solute carrier family 8 (sodium/calcium exchanger), member 3 	ENSMUST00000182208.1|Slc8a3|ENSMUSG00000079055.4|solute carrier family 8 (sodium/calcium exchanger), member 3
mm10_v2_chr8_+_54954728_54954820	0.105956	Gli1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr4_+_108847827_108847895	0.101667	Gli1	ENSMUST00000102738.2|Kti12|ENSMUSG00000073775.3|KTI12 homolog, chromatin associated (S. cerevisiae)
mm10_v2_chr11_+_85311232_85311286	0.100673	Gli1	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr18_-_10610048_10610116	0.0990026	Gli1	ENSMUST00000115864.1|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr7_-_80340152_80340210	0.0974252	Gli1	ENSMUST00000133728.1|Unc45a|ENSMUSG00000030533.9|unc-45 homolog A (C. elegans)
mm10_v2_chr6_-_135310347_135310370	0.0973269	Gli1	ENSMUST00000050471.2|Pbp2|ENSMUSG00000047104.4|phosphatidylethanolamine binding protein 2
mm10_v2_chr12_+_44328882_44328954	0.0970895	Gli1	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr2_+_181497165_181497216	0.0954773	Gli1	ENSMUST00000149163.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000000844.8|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000184849.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000108800.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000069712.2|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr14_-_41008256_41008275	0.0936584	Gli1	ENSMUST00000136661.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A
mm10_v2_chr2_+_153108468_153108484	0.0927352	Gli1	ENSMUST00000109799.1|Hck|ENSMUSG00000003283.7|hemopoietic cell kinase 	ENSMUST00000003370.7|Hck|ENSMUSG00000003283.7|hemopoietic cell kinase
mm10_v2_chr16_+_92498122_92498175	0.0912703	Gli1	ENSMUST00000023670.3|Clic6|ENSMUSG00000022949.3|chloride intracellular channel 6
mm10_v2_chr15_-_101940255_101940324	0.0908932	Gli1	ENSMUST00000023799.7|Krt79|ENSMUSG00000061397.7|keratin 79
mm10_v2_chr4_-_147848358_147848425	0.0907793	Gli1	ENSMUST00000105718.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933 	ENSMUST00000135798.1|Zfp933|ENSMUSG00000059423.7|zinc finger protein 933
mm10_v2_chr12_-_112673944_112674086	0.0888527	Gli1	ENSMUST00000130342.1|Akt1|ENSMUSG00000001729.8|thymoma viral proto-oncogene 1
mm10_v2_chr18_-_10610346_10610363	0.0868489	Gli1	ENSMUST00000025142.5|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr7_-_142899985_142900014	0.0867765	Gli1	ENSMUST00000000219.3|Th|ENSMUSG00000000214.4|tyrosine hydroxylase
mm10_v2_chr17_+_23898717_23898722	0.0864355	Gli1	ENSMUST00000088598.5|Dcpp2|ENSMUSG00000096278.1|demilune cell and parotid protein 2
mm10_v2_chr4_+_40948401_40948412	0.0863768	Gli1	ENSMUST00000030128.5|Chmp5|ENSMUSG00000028419.5|charged multivesicular body protein 5
mm10_v2_chr10_+_69533803_69533848	0.0846955	Gli1	ENSMUST00000182155.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183169.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183148.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr5_-_122989086_122989111	0.0823707	Gli1	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr6_-_52012476_52012551	0.0816164	Gli1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr2_+_129800451_129800526	0.081325	Gli1	ENSMUST00000165413.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35 	ENSMUST00000166282.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35
mm10_v2_chr18_-_10610124_10610144	0.0805013	Gli1	ENSMUST00000097670.3|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr11_-_78245942_78245987	0.0779488	Gli1	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr11_-_69544556_69544556	0.0770069	Gli1	ENSMUST00000035539.5|Dnah2|ENSMUSG00000005237.7|dynein, axonemal, heavy chain 2
mm10_v2_chr10_-_64090241_64090262	0.0739685	Gli1	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr13_-_58385190_58385242	0.0736366	Gli1	ENSMUST00000022032.5|2210016F16Rik|ENSMUSG00000021550.5|RIKEN cDNA 2210016F16 gene
mm10_v2_chr5_-_32746317_32746411	0.0718841	Gli1	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr5_-_122989260_122989306	0.0708276	Gli1	ENSMUST00000118027.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr9_-_110117379_110117445	0.0693242	Gli1	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr4_-_155863362_155863362	0.0666152	Gli1	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr2_+_85037212_85037302	0.0665572	Gli1	ENSMUST00000077798.6|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr9_+_110305185_110305229	0.0657949	Gli1	ENSMUST00000068071.7|Elp6|ENSMUSG00000054836.8|elongator acetyltransferase complex subunit 6
mm10_v2_chr12_+_88329254_88329254	0.0645256	Gli1	ENSMUST00000091715.1|Gm10264|ENSMUSG00000069276.1|predicted gene 10264
mm10_v2_chr8_+_45658731_45658804	0.0605301	Gli1	ENSMUST00000143820.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000132139.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr11_-_94704499_94704499	0.0592013	Gli1	ENSMUST00000069852.1|Gm11541|ENSMUSG00000056008.1|predicted gene 11541
mm10_v2_chr19_+_55316313_55316367	0.0580093	Gli1	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr4_-_58553311_58553357	0.0568745	Gli1	ENSMUST00000107571.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000055018.4|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr10_+_40883819_40883862	0.0562431	Gli1	ENSMUST00000105509.1|Wasf1|ENSMUSG00000019831.8|WAS protein family, member 1
mm10_v2_chr9_-_107605295_107605402	0.0561427	Gli1	ENSMUST00000102529.3|Sema3b|ENSMUSG00000057969.9|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm10_v2_chr14_+_45351473_45351473	0.0557118	Gli1	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr18_-_43373248_43373272	0.0551465	Gli1	ENSMUST00000118043.1|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr1_-_125912160_125912214	0.0542495	Gli1	ENSMUST00000159417.1|Lypd1|ENSMUSG00000026344.3|Ly6/Plaur domain containing 1
mm10_v2_chr2_+_174330006_174330126	0.0538084	Gli1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr11_-_69920892_69920966	0.0512177	Gli1	ENSMUST00000152589.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108612.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108611.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr11_+_35769462_35769484	0.0509103	Gli1	ENSMUST00000018990.7|Pank3|ENSMUSG00000018846.8|pantothenate kinase 3
mm10_v2_chr12_+_24498570_24498587	0.0502721	Gli1	ENSMUST00000075954.7|Taf1b|ENSMUSG00000059669.7|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
mm10_v2_chr3_+_88553716_88553806	0.0500182	Gli1	ENSMUST00000008748.6|Ubqln4|ENSMUSG00000008604.6|ubiquilin 4
mm10_v2_chr5_+_91074611_91074629	0.0474405	Gli1	ENSMUST00000031324.4|Ereg|ENSMUSG00000029377.4|epiregulin
mm10_v2_chr2_+_20737306_20737321	0.0460207	Gli1	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr7_-_138397704_138397786	0.0433739	Gli1	ENSMUST00000160436.1|Tcerg1l|ENSMUSG00000091002.2|transcription elongation regulator 1-like
mm10_v2_chr3_+_90266507_90266566	0.0411865	Gli1	ENSMUST00000098914.3|Dennd4b|ENSMUSG00000042404.10|DENN/MADD domain containing 4B
mm10_v2_chr2_+_76369967_76370024	0.0393804	Gli1	ENSMUST00000046389.4|Rbm45|ENSMUSG00000042369.8|RNA binding motif protein 45
mm10_v2_chr4_-_68954351_68954397	0.0367336	Gli1	ENSMUST00000030036.5|Brinp1|ENSMUSG00000028351.5|bone morphogenic protein/retinoic acid inducible neural specific 1
mm10_v2_chr4_-_83021102_83021135	0.032701	Gli1	ENSMUST00000071708.5|Frem1|ENSMUSG00000059049.8|Fras1 related extracellular matrix protein 1
mm10_v2_chr9_+_107928440_107928483	0.0319924	Gli1	ENSMUST00000085073.1|Actl11|ENSMUSG00000066368.1|actin-like 11
mm10_v2_chr7_-_142372210_142372292	0.0318795	Gli1	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr13_+_41655697_41655697	0.03034	Gli1	ENSMUST00000067176.8|Gm5082|ENSMUSG00000054258.8|predicted gene 5082
mm10_v2_chr2_+_70562007_70562042	0.0300295	Gli1	ENSMUST00000094934.4|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr8_-_41016295_41016321	0.0273196	Gli1	ENSMUST00000131965.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr9_+_45954101_45954101	0.0272982	Gli1	ENSMUST00000181487.1|A830035O19Rik|ENSMUSG00000097813.1|RIKEN cDNA A830035O19 gene
mm10_v2_chr12_+_84316830_84316865	0.0270606	Gli1	ENSMUST00000045931.10|Zfp410|ENSMUSG00000042472.10|zinc finger protein 410
mm10_v2_chr2_-_104493690_104493753	0.0269005	Gli1	ENSMUST00000111124.1|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr4_+_74251928_74251990	0.0236682	Gli1	ENSMUST00000030102.5|Kdm4c|ENSMUSG00000028397.7|lysine (K)-specific demethylase 4C
mm10_v2_chr13_-_63431683_63431733	0.0204672	Gli1	ENSMUST00000160931.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000099444.3|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000161977.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000163091.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr10_+_80249441_80249468	0.0175563	Gli1	ENSMUST00000020361.6|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr1_-_56972437_56972502	0.0163089	Gli1	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr1_+_195017399_195017431	0.0141879	Gli1	ENSMUST00000181273.1|A330023F24Rik|ENSMUSG00000096929.1|RIKEN cDNA A330023F24 gene
mm10_v2_chr11_+_93098404_93098437	0.013034	Gli1	ENSMUST00000107859.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000042943.6|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107861.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107858.2|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10
mm10_v2_chr4_-_58553553_58553898	0.0122703	Gli1	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr2_+_85037448_85037530	0.00886532	Gli1	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr10_+_69533761_69533776	0.00648733	Gli1	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr5_-_123721007_123721062	0.00636464	Gli1	ENSMUST00000031376.7|Zcchc8|ENSMUSG00000029427.7|zinc finger, CCHC domain containing 8
mm10_v2_chr11_-_58801944_58801968	0.00609547	Gli1	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr7_+_141216626_141216700	0.00404301	Gli1	ENSMUST00000141804.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 	ENSMUST00000148975.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm10_v2_chr16_-_90284412_90284498	0.0033638	Gli1	ENSMUST00000039280.7|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
