mm10_v2_chr7_+_110018301_110018425	1.45989	GUAGUGU	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chr2_+_23068168_23068241	1.37479	GUAGUGU	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr5_+_73491026_73491110	1.30639	GUAGUGU	ENSMUST00000063882.5|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 	ENSMUST00000113558.1|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm10_v2_chr18_+_34220978_34221020	1.23092	GUAGUGU	ENSMUST00000079362.5|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli 	ENSMUST00000115781.3|Apc|ENSMUSG00000005871.8|adenomatosis polyposis coli
mm10_v2_chr2_-_12301914_12301922	1.11033	GUAGUGU	ENSMUST00000028106.4|Itga8|ENSMUSG00000026768.4|integrin alpha 8
mm10_v2_chr5_-_106696819_106696839	1.08018	GUAGUGU	ENSMUST00000127434.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112696.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112698.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr10_-_12861735_12861735	1.04933	GUAGUGU	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr11_-_23497867_23497962	1.03383	GUAGUGU	ENSMUST00000128559.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000147157.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000109539.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2
mm10_v2_chr18_-_39490649_39490717	0.996289	GUAGUGU	ENSMUST00000115567.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr2_+_6322621_6322667	0.971617	GUAGUGU	ENSMUST00000114937.1|Usp6nl|ENSMUSG00000039046.9|USP6 N-terminal like
mm10_v2_chr1_+_151755339_151755393	0.966068	GUAGUGU	ENSMUST00000059498.5|Edem3|ENSMUSG00000043019.6|ER degradation enhancer, mannosidase alpha-like 3
mm10_v2_chr5_-_76304474_76304548	0.916402	GUAGUGU	ENSMUST00000075159.1|Clock|ENSMUSG00000029238.8|circadian locomotor output cycles kaput
mm10_v2_chr10_+_7681197_7681225	0.915652	GUAGUGU	ENSMUST00000165952.1|Lats1|ENSMUSG00000040021.6|large tumor suppressor
mm10_v2_chr4_+_47353222_47353265	0.901331	GUAGUGU	ENSMUST00000007757.8|Tgfbr1|ENSMUSG00000007613.9|transforming growth factor, beta receptor I
mm10_v2_chr12_+_32953874_32953891	0.894146	GUAGUGU	ENSMUST00000076698.5|Sypl|ENSMUSG00000020570.8|synaptophysin-like protein
mm10_v2_chr15_-_3995708_3995760	0.85883	GUAGUGU	ENSMUST00000046633.8|AW549877|ENSMUSG00000041935.9|expressed sequence AW549877
mm10_v2_chr3_+_65528404_65528431	0.832809	GUAGUGU	ENSMUST00000047906.3|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr9_-_101251810_101251839	0.767013	GUAGUGU	ENSMUST00000075941.5|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chrX_-_56598069_56598107	0.713913	GUAGUGU	ENSMUST00000059899.2|Mmgt1|ENSMUSG00000061273.3|membrane magnesium transporter 1
mm10_v2_chr5_+_43233463_43233491	0.708478	GUAGUGU	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr18_-_6241486_6241550	0.700982	GUAGUGU	ENSMUST00000025083.7|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr12_-_51691883_51691925	0.688637	GUAGUGU	ENSMUST00000013130.8|Strn3|ENSMUSG00000020954.9|striatin, calmodulin binding protein 3 	ENSMUST00000169503.1|Strn3|ENSMUSG00000020954.9|striatin, calmodulin binding protein 3
mm10_v2_chr1_+_55131231_55131249	0.686705	GUAGUGU	ENSMUST00000162364.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein 	ENSMUST00000159311.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr10_-_7956223_7956271	0.678847	GUAGUGU	ENSMUST00000146444.1|Tab2|ENSMUSG00000015755.10|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm10_v2_chr2_+_83724397_83724555	0.665382	GUAGUGU	ENSMUST00000028499.4|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000141725.1|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000111740.2|Itgav|ENSMUSG00000027087.5|integrin alpha V
mm10_v2_chr10_-_68278713_68278735	0.658443	GUAGUGU	ENSMUST00000020106.7|Arid5b|ENSMUSG00000019947.9|AT rich interactive domain 5B (MRF1-like)
mm10_v2_chr3_-_10440054_10440127	0.653301	GUAGUGU	ENSMUST00000099223.4|Snx16|ENSMUSG00000027534.10|sorting nexin 16 	ENSMUST00000029047.6|Snx16|ENSMUSG00000027534.10|sorting nexin 16
mm10_v2_chr12_-_51829525_51829553	0.639517	GUAGUGU	ENSMUST00000179265.1|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1 	ENSMUST00000042052.8|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1
mm10_v2_chr11_+_23256001_23256105	0.631732	GUAGUGU	ENSMUST00000020538.6|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast) 	ENSMUST00000109551.1|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast) 	ENSMUST00000102870.1|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast) 	ENSMUST00000102869.1|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast)
mm10_v2_chr17_+_53566971_53567023	0.631167	GUAGUGU	ENSMUST00000000724.8|Kat2b|ENSMUSG00000000708.8|K(lysine) acetyltransferase 2B
mm10_v2_chr13_-_3611064_3611118	0.618981	GUAGUGU	ENSMUST00000096069.3|BC016423|ENSMUSG00000033799.9|cDNA sequence BC016423
mm10_v2_chr1_-_151428440_151428474	0.603784	GUAGUGU	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr12_+_111574491_111574542	0.59429	GUAGUGU	ENSMUST00000084953.5|Mark3|ENSMUSG00000007411.9|MAP/microtubule affinity-regulating kinase 3 	ENSMUST00000075281.6|Mark3|ENSMUSG00000007411.9|MAP/microtubule affinity-regulating kinase 3
mm10_v2_chr14_-_72709986_72710027	0.592909	GUAGUGU	ENSMUST00000089017.5|Fndc3a|ENSMUSG00000033487.8|fibronectin type III domain containing 3A
mm10_v2_chr7_-_141434532_141434605	0.587393	GUAGUGU	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr1_-_161876656_161876682	0.576903	GUAGUGU	ENSMUST00000048377.5|Suco|ENSMUSG00000040297.7|SUN domain containing ossification factor
mm10_v2_chr13_+_113794505_113794572	0.551822	GUAGUGU	ENSMUST00000091201.6|Arl15|ENSMUSG00000042348.9|ADP-ribosylation factor-like 15
mm10_v2_chr18_+_42275353_42275392	0.54731	GUAGUGU	ENSMUST00000046972.7|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27 	ENSMUST00000091920.5|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27
mm10_v2_chr5_-_62766153_62766246	0.543084	GUAGUGU	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr5_-_66173051_66173117	0.531868	GUAGUGU	ENSMUST00000113726.1|Rbm47|ENSMUSG00000070780.5|RNA binding motif protein 47
mm10_v2_chr9_-_123851855_123851912	0.531682	GUAGUGU	ENSMUST00000184082.1|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1 	ENSMUST00000167595.2|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1
mm10_v2_chr15_+_12117813_12117846	0.529612	GUAGUGU	ENSMUST00000122941.1|Zfr|ENSMUSG00000022201.9|zinc finger RNA binding protein
mm10_v2_chr6_-_24664960_24665038	0.521865	GUAGUGU	ENSMUST00000041737.7|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human) 	ENSMUST00000031695.8|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human)
mm10_v2_chr14_-_25769033_25769083	0.512375	GUAGUGU	ENSMUST00000069180.7|Zcchc24|ENSMUSG00000055538.7|zinc finger, CCHC domain containing 24
mm10_v2_chr1_+_139422196_139422383	0.506544	GUAGUGU	ENSMUST00000039867.7|Zbtb41|ENSMUSG00000033964.7|zinc finger and BTB domain containing 41 homolog
mm10_v2_chr15_-_97055942_97055964	0.505371	GUAGUGU	ENSMUST00000023101.3|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr1_+_180726019_180726106	0.501637	GUAGUGU	ENSMUST00000027780.4|Acbd3|ENSMUSG00000026499.4|acyl-Coenzyme A binding domain containing 3
mm10_v2_chr8_-_34965631_34965714	0.497371	GUAGUGU	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr7_-_118243564_118243641	0.495947	GUAGUGU	ENSMUST00000179047.1|Smg1|ENSMUSG00000030655.8|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) 	ENSMUST00000032891.8|Smg1|ENSMUSG00000030655.8|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm10_v2_chr2_-_103303179_103303278	0.493193	GUAGUGU	ENSMUST00000090475.3|Ehf|ENSMUSG00000012350.9|ets homologous factor
mm10_v2_chr5_+_64970069_64970089	0.48408	GUAGUGU	ENSMUST00000031080.8|Fam114a1|ENSMUSG00000029185.8|family with sequence similarity 114, member A1
mm10_v2_chr19_-_12796108_12796146	0.481298	GUAGUGU	ENSMUST00000038627.8|Zfp91|ENSMUSG00000024695.9|zinc finger protein 91
mm10_v2_chr14_+_18271122_18271186	0.463504	GUAGUGU	ENSMUST00000132374.1|Nkiras1|ENSMUSG00000021772.8|NFKB inhibitor interacting Ras-like protein 1 	ENSMUST00000133460.1|Nkiras1|ENSMUSG00000021772.8|NFKB inhibitor interacting Ras-like protein 1
mm10_v2_chr16_+_87698904_87698959	0.46103	GUAGUGU	ENSMUST00000026703.5|Bach1|ENSMUSG00000025612.5|BTB and CNC homology 1
mm10_v2_chr3_+_9250602_9250602	0.447408	GUAGUGU	ENSMUST00000155203.1|Zbtb10|ENSMUSG00000069114.8|zinc finger and BTB domain containing 10
mm10_v2_chr16_-_64786321_64786321	0.443997	GUAGUGU	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr9_-_43105718_43105793	0.440933	GUAGUGU	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr15_-_94589870_94589889	0.43004	GUAGUGU	ENSMUST00000023087.6|Twf1|ENSMUSG00000022451.6|twinfilin, actin-binding protein, homolog 1 (Drosophila) 	ENSMUST00000152590.1|Twf1|ENSMUSG00000022451.6|twinfilin, actin-binding protein, homolog 1 (Drosophila)
mm10_v2_chr5_+_138085083_138085147	0.426867	GUAGUGU	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr9_-_90114812_90114821	0.417256	GUAGUGU	ENSMUST00000085248.5|Morf4l1|ENSMUSG00000062270.7|mortality factor 4 like 1 	ENSMUST00000169860.1|Morf4l1|ENSMUSG00000062270.7|mortality factor 4 like 1
mm10_v2_chr7_+_113207465_113207595	0.411117	GUAGUGU	ENSMUST00000047321.7|Arntl|ENSMUSG00000055116.7|aryl hydrocarbon receptor nuclear translocator-like
mm10_v2_chr16_+_10488175_10488204	0.408831	GUAGUGU	ENSMUST00000023147.6|Ciita|ENSMUSG00000022504.9|class II transactivator
mm10_v2_chr17_-_66519666_66519727	0.408729	GUAGUGU	ENSMUST00000167962.1|Rab12|ENSMUSG00000023460.6|RAB12, member RAS oncogene family 	ENSMUST00000070538.4|Rab12|ENSMUSG00000023460.6|RAB12, member RAS oncogene family
mm10_v2_chr17_+_83350925_83350998	0.403909	GUAGUGU	ENSMUST00000096766.4|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000112363.2|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4 	ENSMUST00000049503.8|Eml4|ENSMUSG00000032624.9|echinoderm microtubule associated protein like 4
mm10_v2_chr2_+_14074091_14074146	0.3997	GUAGUGU	ENSMUST00000102960.4|Stam|ENSMUSG00000026718.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm10_v2_chr16_-_56717446_56717457	0.382587	GUAGUGU	ENSMUST00000065515.7|Tfg|ENSMUSG00000022757.12|Trk-fused gene
mm10_v2_chr2_+_52857844_52857868	0.38196	GUAGUGU	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chrX_-_13846508_13846591	0.380028	GUAGUGU	ENSMUST00000115436.2|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000033321.4|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000115438.3|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm10_v2_chr8_-_122974793_122974793	0.375524	GUAGUGU	ENSMUST00000098334.5|Ankrd11|ENSMUSG00000035569.10|ankyrin repeat domain 11
mm10_v2_chr10_+_20312461_20312492	0.374657	GUAGUGU	ENSMUST00000092678.3|Bclaf1|ENSMUSG00000037608.9|BCL2-associated transcription factor 1 	ENSMUST00000043881.5|Bclaf1|ENSMUSG00000037608.9|BCL2-associated transcription factor 1
mm10_v2_chr14_+_14012491_14012693	0.350415	GUAGUGU	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chrX_-_108834303_108834381	0.349462	GUAGUGU	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr12_+_16894894_16894978	0.347688	GUAGUGU	ENSMUST00000020904.6|Rock2|ENSMUSG00000020580.9|Rho-associated coiled-coil containing protein kinase 2
mm10_v2_chr4_+_102254993_102255003	0.338934	GUAGUGU	ENSMUST00000106908.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr11_+_75679259_75679327	0.310609	GUAGUGU	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr3_-_122619663_122619680	0.307	GUAGUGU	ENSMUST00000162409.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr11_+_52232009_52232041	0.296455	GUAGUGU	ENSMUST00000037324.5|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A 	ENSMUST00000166537.1|Skp1a|ENSMUSG00000036309.8|S-phase kinase-associated protein 1A
mm10_v2_chr5_+_108461222_108461241	0.29583	GUAGUGU	ENSMUST00000046975.5|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3 	ENSMUST00000112597.1|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3
mm10_v2_chr2_-_73892530_73892555	0.29335	GUAGUGU	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr18_+_5591860_5591902	0.290891	GUAGUGU	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr18_+_66458587_66458604	0.284568	GUAGUGU	ENSMUST00000025399.7|Pmaip1|ENSMUSG00000024521.7|phorbol-12-myristate-13-acetate-induced protein 1
mm10_v2_chrX_+_18162575_18162657	0.2823	GUAGUGU	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr4_+_8535604_8535717	0.281175	GUAGUGU	ENSMUST00000060232.7|Rab2a|ENSMUSG00000047187.9|RAB2A, member RAS oncogene family
mm10_v2_chr2_+_155381808_155381884	0.278225	GUAGUGU	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr16_-_32247152_32247179	0.277481	GUAGUGU	ENSMUST00000042732.5|Fbxo45|ENSMUSG00000035764.5|F-box protein 45
mm10_v2_chr8_-_121652895_121652913	0.276985	GUAGUGU	ENSMUST00000046386.4|Zcchc14|ENSMUSG00000061410.6|zinc finger, CCHC domain containing 14
mm10_v2_chr11_+_80428598_80428656	0.273833	GUAGUGU	ENSMUST00000173938.1|Psmd11|ENSMUSG00000017428.10|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 	ENSMUST00000017572.7|Psmd11|ENSMUSG00000017428.10|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm10_v2_chr2_-_39065438_39065503	0.272386	GUAGUGU	ENSMUST00000112850.2|Golga1|ENSMUSG00000026754.10|golgi autoantigen, golgin subfamily a, 1
mm10_v2_chr7_-_66689589_66689603	0.267552	GUAGUGU	ENSMUST00000124899.1|Asb7|ENSMUSG00000030509.10|ankyrin repeat and SOCS box-containing 7
mm10_v2_chr10_+_70097102_70097211	0.261172	GUAGUGU	ENSMUST00000147545.1|Ccdc6|ENSMUSG00000048701.7|coiled-coil domain containing 6
mm10_v2_chr15_+_6708372_6708396	0.253648	GUAGUGU	ENSMUST00000061656.6|Rictor|ENSMUSG00000050310.8|RPTOR independent companion of MTOR, complex 2
mm10_v2_chr11_+_90249469_90249482	0.23763	GUAGUGU	ENSMUST00000004050.6|Mmd|ENSMUSG00000003948.10|monocyte to macrophage differentiation-associated
mm10_v2_chr10_+_69533761_69533776	0.236178	GUAGUGU	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr1_-_186705980_186705999	0.231732	GUAGUGU	ENSMUST00000045288.8|Tgfb2|ENSMUSG00000039239.9|transforming growth factor, beta 2
mm10_v2_chr3_-_116007399_116007411	0.227914	GUAGUGU	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr7_-_16614937_16615021	0.226449	GUAGUGU	ENSMUST00000171937.1|Grlf1|ENSMUSG00000058230.6|glucocorticoid receptor DNA binding factor 1 	ENSMUST00000075845.4|Grlf1|ENSMUSG00000058230.6|glucocorticoid receptor DNA binding factor 1
mm10_v2_chr3_-_144720315_144720336	0.221421	GUAGUGU	ENSMUST00000163279.1|Sh3glb1|ENSMUSG00000037062.9|SH3-domain GRB2-like B1 (endophilin)
mm10_v2_chr2_+_113327711_113327753	0.21992	GUAGUGU	ENSMUST00000099576.2|Fmn1|ENSMUSG00000044042.12|formin 1
mm10_v2_chr2_+_48814109_48814173	0.213618	GUAGUGU	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chrX_+_6047453_6047453	0.200382	GUAGUGU	ENSMUST00000103007.3|Nudt11|ENSMUSG00000073295.4|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm10_v2_chr3_-_41082992_41083046	0.191269	GUAGUGU	ENSMUST00000058578.7|Pgrmc2|ENSMUSG00000049940.7|progesterone receptor membrane component 2
mm10_v2_chr11_-_31671863_31671885	0.187071	GUAGUGU	ENSMUST00000058060.7|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr5_-_24842579_24842624	0.186902	GUAGUGU	ENSMUST00000030787.8|Rheb|ENSMUSG00000028945.8|Ras homolog enriched in brain
mm10_v2_chr2_+_117121374_117121374	0.183573	GUAGUGU	ENSMUST00000028829.6|Spred1|ENSMUSG00000027351.8|sprouty protein with EVH-1 domain 1, related sequence
mm10_v2_chr2_+_113441064_113441079	0.176113	GUAGUGU	ENSMUST00000081349.6|Fmn1|ENSMUSG00000044042.12|formin 1
mm10_v2_chr1_-_46854046_46854079	0.172945	GUAGUGU	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr9_-_51008936_51009080	0.171729	GUAGUGU	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chr4_+_116720920_116721004	0.165632	GUAGUGU	ENSMUST00000045542.6|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2 	ENSMUST00000106459.1|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2
mm10_v2_chr11_-_6475992_6476102	0.161524	GUAGUGU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr6_-_92214897_92214925	0.151746	GUAGUGU	ENSMUST00000014694.8|Zfyve20|ENSMUSG00000014550.8|zinc finger, FYVE domain containing 20
mm10_v2_chr4_+_131921771_131921771	0.147161	GUAGUGU	ENSMUST00000094666.3|Tmem200b|ENSMUSG00000070720.3|transmembrane protein 200B
mm10_v2_chr3_+_145292472_145292536	0.143166	GUAGUGU	ENSMUST00000029848.4|Col24a1|ENSMUSG00000028197.4|collagen, type XXIV, alpha 1 	ENSMUST00000139001.1|Col24a1|ENSMUSG00000028197.4|collagen, type XXIV, alpha 1
mm10_v2_chr18_-_88894322_88894371	0.142463	GUAGUGU	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr15_-_77842133_77842175	0.136565	GUAGUGU	ENSMUST00000016771.6|Myh9|ENSMUSG00000022443.10|myosin, heavy polypeptide 9, non-muscle
mm10_v2_chr18_-_77713978_77714010	0.13304	GUAGUGU	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr13_+_112464070_112464162	0.132775	GUAGUGU	ENSMUST00000183663.1|Il6st|ENSMUSG00000021756.6|interleukin 6 signal transducer 	ENSMUST00000184311.1|Il6st|ENSMUSG00000021756.6|interleukin 6 signal transducer 	ENSMUST00000183886.1|Il6st|ENSMUSG00000021756.6|interleukin 6 signal transducer
mm10_v2_chr2_-_130840091_130840150	0.132206	GUAGUGU	ENSMUST00000044766.8|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000138990.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000120316.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000110243.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr14_-_21052420_21052450	0.131179	GUAGUGU	ENSMUST00000154460.1|Ap3m1|ENSMUSG00000021824.6|adaptor-related protein complex 3, mu 1 subunit
mm10_v2_chr2_-_35200923_35201120	0.129816	GUAGUGU	ENSMUST00000028238.8|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family 	ENSMUST00000113025.1|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family
mm10_v2_chr5_+_143403819_143403882	0.12837	GUAGUGU	ENSMUST00000110731.2|Kdelr2|ENSMUSG00000079111.2|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm10_v2_chr5_-_149053038_149053053	0.123136	GUAGUGU	ENSMUST00000085546.6|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr8_+_27023793_27023810	0.119691	GUAGUGU	ENSMUST00000033873.7|Erlin2|ENSMUSG00000031483.7|ER lipid raft associated 2
mm10_v2_chr2_-_166996098_166996109	0.115655	GUAGUGU	ENSMUST00000049412.5|Stau1|ENSMUSG00000039536.10|staufen (RNA binding protein) homolog 1 (Drosophila)
mm10_v2_chr8_+_25602236_25602315	0.115239	GUAGUGU	ENSMUST00000146919.1|Whsc1l1|ENSMUSG00000054823.9|Wolf-Hirschhorn syndrome candidate 1-like 1 (human) 	ENSMUST00000142395.1|Whsc1l1|ENSMUSG00000054823.9|Wolf-Hirschhorn syndrome candidate 1-like 1 (human) 	ENSMUST00000139966.1|Whsc1l1|ENSMUSG00000054823.9|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm10_v2_chr5_-_36796722_36796772	0.112907	GUAGUGU	ENSMUST00000068795.3|Mrfap1|ENSMUSG00000055302.5|Morf4 family associated protein 1
mm10_v2_chr13_+_37826225_37826315	0.112888	GUAGUGU	ENSMUST00000128570.1|Rreb1|ENSMUSG00000039087.10|ras responsive element binding protein 1
mm10_v2_chr15_+_34837381_34837381	0.112371	GUAGUGU	ENSMUST00000072868.3|Kcns2|ENSMUSG00000050963.6|K+ voltage-gated channel, subfamily S, 2
mm10_v2_chr5_-_122502192_122502244	0.103304	GUAGUGU	ENSMUST00000179939.1|Atp2a2|ENSMUSG00000029467.9|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 	ENSMUST00000177974.1|Atp2a2|ENSMUSG00000029467.9|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 	ENSMUST00000031423.8|Atp2a2|ENSMUSG00000029467.9|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm10_v2_chrX_-_48208566_48208691	0.0918928	GUAGUGU	ENSMUST00000037960.4|Zdhhc9|ENSMUSG00000036985.6|zinc finger, DHHC domain containing 9
mm10_v2_chr7_+_90130227_90130279	0.0912289	GUAGUGU	ENSMUST00000049537.7|Picalm|ENSMUSG00000039361.9|phosphatidylinositol binding clathrin assembly protein
mm10_v2_chr15_-_103158002_103158002	0.0767696	GUAGUGU	ENSMUST00000064067.8|Smug1|ENSMUSG00000036061.9|single-strand selective monofunctional uracil DNA glycosylase
mm10_v2_chr6_-_52208694_52208722	0.0751645	GUAGUGU	ENSMUST00000062829.7|Hoxa6|ENSMUSG00000043219.8|homeobox A6
mm10_v2_chrX_-_74023908_74023918	0.0716573	GUAGUGU	ENSMUST00000033769.8|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000114352.1|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000068286.5|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000114360.3|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1 	ENSMUST00000114354.3|Irak1|ENSMUSG00000031392.12|interleukin-1 receptor-associated kinase 1
mm10_v2_chr12_-_54862783_54862921	0.0703725	GUAGUGU	ENSMUST00000078124.7|Cfl2|ENSMUSG00000062929.7|cofilin 2, muscle
mm10_v2_chr12_-_119238794_119238863	0.065036	GUAGUGU	ENSMUST00000026360.8|Itgb8|ENSMUSG00000025321.8|integrin beta 8
mm10_v2_chr1_+_131910458_131910539	0.057031	GUAGUGU	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chr6_+_71543797_71543868	0.0562496	GUAGUGU	ENSMUST00000059462.5|Chmp3|ENSMUSG00000053119.5|charged multivesicular body protein 3
mm10_v2_chr12_-_91590009_91590056	0.0560196	GUAGUGU	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr6_-_39725448_39725478	0.054572	GUAGUGU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr2_-_52742169_52742281	0.0543932	GUAGUGU	ENSMUST00000102759.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 	ENSMUST00000127316.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm10_v2_chrX_-_144688180_144688180	0.0455089	GUAGUGU	ENSMUST00000040184.3|Trpc5|ENSMUSG00000041710.4|transient receptor potential cation channel, subfamily C, member 5
mm10_v2_chr10_+_21994666_21994694	0.0440316	GUAGUGU	ENSMUST00000020145.5|Sgk1|ENSMUSG00000019970.9|serum/glucocorticoid regulated kinase 1
mm10_v2_chrX_-_136743675_136743692	0.0314264	GUAGUGU	ENSMUST00000166478.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113097.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr16_+_42907563_42907684	0.0312971	GUAGUGU	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr12_-_102878406_102878449	0.0304281	GUAGUGU	ENSMUST00000045652.6|Btbd7|ENSMUSG00000041702.6|BTB (POZ) domain containing 7
mm10_v2_chr12_+_4769278_4769338	0.0275329	GUAGUGU	ENSMUST00000020967.4|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
mm10_v2_chr10_+_67537861_67537930	0.0262433	GUAGUGU	ENSMUST00000048289.7|Egr2|ENSMUSG00000037868.9|early growth response 2 	ENSMUST00000105438.2|Egr2|ENSMUSG00000037868.9|early growth response 2 	ENSMUST00000130933.1|Egr2|ENSMUSG00000037868.9|early growth response 2 	ENSMUST00000146986.1|Egr2|ENSMUSG00000037868.9|early growth response 2
mm10_v2_chr7_-_144553657_144553757	0.0234149	GUAGUGU	ENSMUST00000168134.3|Ppfia1|ENSMUSG00000037519.10|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
mm10_v2_chr6_-_39377681_39377710	0.0161978	GUAGUGU	ENSMUST00000090243.4|Slc37a3|ENSMUSG00000029924.9|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm10_v2_chr12_+_118846329_118846329	0.0106302	GUAGUGU	ENSMUST00000063918.2|Sp8|ENSMUSG00000048562.6|trans-acting transcription factor 8
mm10_v2_chr3_+_136670076_136670186	0.00178434	GUAGUGU	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
