mm10_v2_chr7_-_17062384_17062427	3.82807	GGAGUGU	ENSMUST00000153833.1|Hif3a|ENSMUSG00000004328.9|hypoxia inducible factor 3, alpha subunit 	ENSMUST00000108492.2|Hif3a|ENSMUSG00000004328.9|hypoxia inducible factor 3, alpha subunit
mm10_v2_chr7_+_16781341_16781352	1.97168	GGAGUGU	ENSMUST00000108496.2|Slc1a5|ENSMUSG00000001918.11|solute carrier family 1 (neutral amino acid transporter), member 5
mm10_v2_chr5_-_148399901_148399912	1.20211	GGAGUGU	ENSMUST00000048116.8|Slc7a1|ENSMUSG00000041313.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
mm10_v2_chr3_+_103102604_103102711	1.16119	GGAGUGU	ENSMUST00000173206.1|Dennd2c|ENSMUSG00000007379.9|DENN/MADD domain containing 2C
mm10_v2_chr9_+_96196246_96196280	1.04828	GGAGUGU	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr9_+_59656368_59656368	0.994764	GGAGUGU	ENSMUST00000034834.9|Pkm|ENSMUSG00000032294.10|pyruvate kinase, muscle 	ENSMUST00000163694.2|Pkm|ENSMUSG00000032294.10|pyruvate kinase, muscle
mm10_v2_chr19_-_40588338_40588371	0.993649	GGAGUGU	ENSMUST00000176939.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr11_-_87359011_87359081	0.992453	GGAGUGU	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr7_+_45434833_45434871	0.941086	GGAGUGU	ENSMUST00000003964.8|Gys1|ENSMUSG00000003865.8|glycogen synthase 1, muscle
mm10_v2_chr13_-_97099296_97099296	0.846813	GGAGUGU	ENSMUST00000071118.4|Gm6169|ENSMUSG00000057762.4|predicted gene 6169
mm10_v2_chr2_-_34913976_34914043	0.762602	GGAGUGU	ENSMUST00000028232.3|Phf19|ENSMUSG00000026873.3|PHD finger protein 19
mm10_v2_chrX_+_75382384_75382399	0.713767	GGAGUGU	ENSMUST00000033541.4|Fundc2|ENSMUSG00000031198.4|FUN14 domain containing 2
mm10_v2_chr2_-_153529941_153529985	0.63327	GGAGUGU	ENSMUST00000035346.7|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chr7_-_126799163_126799254	0.630623	GGAGUGU	ENSMUST00000032934.5|Aldoa|ENSMUSG00000030695.7|aldolase A, fructose-bisphosphate
mm10_v2_chr12_-_27342696_27342726	0.548411	GGAGUGU	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr15_+_76351303_76351337	0.544239	GGAGUGU	ENSMUST00000023212.8|Maf1|ENSMUSG00000022553.9|MAF1 homolog (S. cerevisiae) 	ENSMUST00000160172.1|Maf1|ENSMUSG00000022553.9|MAF1 homolog (S. cerevisiae)
mm10_v2_chr13_-_107022027_107022138	0.495481	GGAGUGU	ENSMUST00000117539.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000122233.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000022204.9|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A 	ENSMUST00000159772.1|Kif2a|ENSMUSG00000021693.13|kinesin family member 2A
mm10_v2_chr4_-_45408646_45408768	0.485122	GGAGUGU	ENSMUST00000153904.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000132815.2|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000107796.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000116341.3|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51
mm10_v2_chr7_+_91090697_91090727	0.466097	GGAGUGU	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr15_-_51991679_51991760	0.465611	GGAGUGU	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr2_-_25608447_25608521	0.445243	GGAGUGU	ENSMUST00000058137.8|Rabl6|ENSMUSG00000015087.8|RAB, member of RAS oncogene family-like 6
mm10_v2_chr4_+_129984833_129984876	0.437766	GGAGUGU	ENSMUST00000120204.1|Bai2|ENSMUSG00000028782.8|brain-specific angiogenesis inhibitor 2
mm10_v2_chr12_+_53248677_53248677	0.416305	GGAGUGU	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr16_+_11066292_11066381	0.415532	GGAGUGU	ENSMUST00000089011.4|Snn|ENSMUSG00000037972.6|stannin
mm10_v2_chr1_-_178337774_178337797	0.398986	GGAGUGU	ENSMUST00000037748.7|Hnrnpu|ENSMUSG00000039630.8|heterogeneous nuclear ribonucleoprotein U
mm10_v2_chr5_-_74068361_74068438	0.368045	GGAGUGU	ENSMUST00000119154.1|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46 	ENSMUST00000068058.7|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46
mm10_v2_chr7_-_80803253_80803331	0.356216	GGAGUGU	ENSMUST00000167377.1|Iqgap1|ENSMUSG00000030536.9|IQ motif containing GTPase activating protein 1
mm10_v2_chr11_+_70017085_70017146	0.335453	GGAGUGU	ENSMUST00000108589.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr10_-_42276744_42276763	0.321309	GGAGUGU	ENSMUST00000105502.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000105501.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chrX_+_96096034_96096056	0.311214	GGAGUGU	ENSMUST00000117399.1|Msn|ENSMUSG00000031207.10|moesin
mm10_v2_chr1_-_21961581_21961581	0.308671	GGAGUGU	ENSMUST00000029667.6|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173058.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173404.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5
mm10_v2_chr8_-_80057989_80058017	0.308297	GGAGUGU	ENSMUST00000079038.2|Hhip|ENSMUSG00000064325.3|Hedgehog-interacting protein
mm10_v2_chr10_+_59323296_59323374	0.298845	GGAGUGU	ENSMUST00000009789.8|P4ha1|ENSMUSG00000019916.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide 	ENSMUST00000092512.4|P4ha1|ENSMUSG00000019916.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide 	ENSMUST00000105466.2|P4ha1|ENSMUSG00000019916.8|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
mm10_v2_chr14_-_121379206_121379334	0.272353	GGAGUGU	ENSMUST00000079817.7|Stk24|ENSMUSG00000063410.7|serine/threonine kinase 24
mm10_v2_chr3_+_90341654_90341654	0.264448	GGAGUGU	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr19_+_11516473_11516512	0.261196	GGAGUGU	ENSMUST00000163078.1|Ms4a6b|ENSMUSG00000024677.7|membrane-spanning 4-domains, subfamily A, member 6B
mm10_v2_chr2_-_131187282_131187282	0.256829	GGAGUGU	ENSMUST00000028801.1|Spef1|ENSMUSG00000027329.3|sperm flagellar 1
mm10_v2_chr7_-_16924114_16924137	0.249018	GGAGUGU	ENSMUST00000019514.9|Calm3|ENSMUSG00000019370.10|calmodulin 3
mm10_v2_chr17_-_17624458_17624496	0.24159	GGAGUGU	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr4_+_136286061_136286114	0.235792	GGAGUGU	ENSMUST00000069195.4|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46 	ENSMUST00000130658.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr1_+_75546258_75546312	0.229321	GGAGUGU	ENSMUST00000124341.1|Slc4a3|ENSMUSG00000006576.10|solute carrier family 4 (anion exchanger), member 3
mm10_v2_chr6_+_113307160_113307230	0.217893	GGAGUGU	ENSMUST00000113122.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1 	ENSMUST00000113119.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1 	ENSMUST00000113121.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1 	ENSMUST00000113117.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1
mm10_v2_chr19_+_11469353_11469381	0.214901	GGAGUGU	ENSMUST00000165310.1|Ms4a6c|ENSMUSG00000079419.3|membrane-spanning 4-domains, subfamily A, member 6C
mm10_v2_chr7_+_43463145_43463185	0.211349	GGAGUGU	ENSMUST00000107977.1|Vsig10l|ENSMUSG00000070604.3|ZV-set and immunoglobulin domain containing 10 like
mm10_v2_chr4_-_151057933_151057969	0.206071	GGAGUGU	ENSMUST00000030797.3|Vamp3|ENSMUSG00000028955.3|vesicle-associated membrane protein 3
mm10_v2_chr6_+_52177498_52177498	0.204937	GGAGUGU	ENSMUST00000070587.3|5730596B20Rik|ENSMUSG00000056468.3|RIKEN cDNA 5730596B20 gene
mm10_v2_chr7_-_127208423_127208504	0.204543	GGAGUGU	ENSMUST00000120705.1|Tbc1d10b|ENSMUSG00000042492.6|TBC1 domain family, member 10b
mm10_v2_chr16_-_31201150_31201243	0.183462	GGAGUGU	ENSMUST00000058033.7|Acap2|ENSMUSG00000049076.9|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm10_v2_chr14_-_105896819_105896819	0.18262	GGAGUGU	ENSMUST00000022709.4|Spry2|ENSMUSG00000022114.4|sprouty homolog 2 (Drosophila)
mm10_v2_chr11_+_77493408_77493571	0.155288	GGAGUGU	ENSMUST00000037285.3|Git1|ENSMUSG00000011877.7|G protein-coupled receptor kinase-interactor 1 	ENSMUST00000100812.3|Git1|ENSMUSG00000011877.7|G protein-coupled receptor kinase-interactor 1
mm10_v2_chrX_-_101269023_101269023	0.15176	GGAGUGU	ENSMUST00000117736.1|Gm20489|ENSMUSG00000092463.1|predicted gene 20489
mm10_v2_chr12_-_55821157_55821195	0.150931	GGAGUGU	ENSMUST00000110687.1|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1 	ENSMUST00000085385.5|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1
mm10_v2_chrX_-_101263986_101264002	0.150917	GGAGUGU	ENSMUST00000101358.2|Gm614|ENSMUSG00000090141.1|predicted gene 614
mm10_v2_chr8_-_84687839_84687884	0.147988	GGAGUGU	ENSMUST00000001975.4|Nacc1|ENSMUSG00000001910.4|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
mm10_v2_chr17_-_28486082_28486149	0.140541	GGAGUGU	ENSMUST00000079413.3|Fkbp5|ENSMUSG00000024222.10|FK506 binding protein 5
mm10_v2_chr5_-_69592311_69592337	0.131803	GGAGUGU	ENSMUST00000031117.6|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr4_-_129742275_129742312	0.125974	GGAGUGU	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr15_+_76538934_76538961	0.125099	GGAGUGU	ENSMUST00000023220.8|Slc52a2|ENSMUSG00000022560.8|solute carrier protein 52, member 2
mm10_v2_chr1_+_55237177_55237255	0.123145	GGAGUGU	ENSMUST00000061334.8|Mars2|ENSMUSG00000046994.8|methionine-tRNA synthetase 2 (mitochondrial)
mm10_v2_chr17_-_56935388_56935504	0.104651	GGAGUGU	ENSMUST00000025053.8|Mllt1|ENSMUSG00000024212.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm10_v2_chr2_-_120404058_120404092	0.103926	GGAGUGU	ENSMUST00000090042.5|Tmem87a|ENSMUSG00000033808.10|transmembrane protein 87A 	ENSMUST00000110729.1|Tmem87a|ENSMUSG00000033808.10|transmembrane protein 87A 	ENSMUST00000090046.5|Tmem87a|ENSMUSG00000033808.10|transmembrane protein 87A
mm10_v2_chrX_+_166238901_166238914	0.103118	GGAGUGU	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr19_-_47536997_47537119	0.0935245	GGAGUGU	ENSMUST00000182808.1|Obfc1|ENSMUSG00000042694.11|oligonucleotide/oligosaccharide-binding fold containing 1 	ENSMUST00000049369.9|Obfc1|ENSMUSG00000042694.11|oligonucleotide/oligosaccharide-binding fold containing 1
mm10_v2_chr1_-_135375233_135375245	0.0794233	GGAGUGU	ENSMUST00000041240.3|Shisa4|ENSMUSG00000041889.7|shisa homolog 4 (Xenopus laevis)
mm10_v2_chr5_-_31180110_31180158	0.079066	GGAGUGU	ENSMUST00000043161.6|Gtf3c2|ENSMUSG00000029144.10|general transcription factor IIIC, polypeptide 2, beta 	ENSMUST00000088010.5|Gtf3c2|ENSMUSG00000029144.10|general transcription factor IIIC, polypeptide 2, beta
mm10_v2_chr16_+_32914094_32914142	0.0786312	GGAGUGU	ENSMUST00000023491.6|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000170899.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000171118.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000170201.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000165616.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000135193.2|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3
mm10_v2_chr11_+_102189620_102189734	0.0766051	GGAGUGU	ENSMUST00000070334.3|G6pc3|ENSMUSG00000034793.9|glucose 6 phosphatase, catalytic, 3 	ENSMUST00000078975.7|G6pc3|ENSMUSG00000034793.9|glucose 6 phosphatase, catalytic, 3
mm10_v2_chr3_+_157947414_157947510	0.0711473	GGAGUGU	ENSMUST00000164582.1|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c 	ENSMUST00000040787.8|Ankrd13c|ENSMUSG00000039988.8|ankyrin repeat domain 13c
mm10_v2_chr9_+_54586450_54586512	0.0626608	GGAGUGU	ENSMUST00000167866.1|Idh3a|ENSMUSG00000032279.10|isocitrate dehydrogenase 3 (NAD+) alpha
mm10_v2_chr15_-_13173607_13173644	0.0622742	GGAGUGU	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr6_-_39725448_39725478	0.0605845	GGAGUGU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr4_+_133369702_133369709	0.0585747	GGAGUGU	ENSMUST00000030669.7|Slc9a1|ENSMUSG00000028854.9|solute carrier family 9 (sodium/hydrogen exchanger), member 1
mm10_v2_chr4_+_123201503_123201529	0.0570988	GGAGUGU	ENSMUST00000068262.5|Nt5c1a|ENSMUSG00000054958.6|5'-nucleotidase, cytosolic IA
mm10_v2_chr14_-_121505247_121505264	0.0568245	GGAGUGU	ENSMUST00000088386.6|Slc15a1|ENSMUSG00000025557.9|solute carrier family 15 (oligopeptide transporter), member 1
mm10_v2_chr12_-_104751900_104751952	0.0533318	GGAGUGU	ENSMUST00000041987.6|Dicer1|ENSMUSG00000041415.9|dicer 1, ribonuclease type III
mm10_v2_chr8_+_88647315_88647315	0.051309	GGAGUGU	ENSMUST00000118370.1|Nod2|ENSMUSG00000055994.9|nucleotide-binding oligomerization domain containing 2 	ENSMUST00000054324.8|Nod2|ENSMUSG00000055994.9|nucleotide-binding oligomerization domain containing 2
mm10_v2_chr8_+_12757002_12757027	0.0487871	GGAGUGU	ENSMUST00000033818.3|Atp11a|ENSMUSG00000031441.9|ATPase, class VI, type 11A 	ENSMUST00000091237.5|Atp11a|ENSMUSG00000031441.9|ATPase, class VI, type 11A
mm10_v2_chr11_-_83429455_83429455	0.0466936	GGAGUGU	ENSMUST00000052521.2|Gas2l2|ENSMUSG00000020686.6|growth arrest-specific 2 like 2
mm10_v2_chr8_+_4166556_4166739	0.0460807	GGAGUGU	ENSMUST00000177053.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like 	ENSMUST00000176149.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like 	ENSMUST00000176072.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like 	ENSMUST00000176825.1|Evi5l|ENSMUSG00000011832.9|ecotropic viral integration site 5 like
mm10_v2_chrX_+_101299143_101299201	0.0449975	GGAGUGU	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr4_-_135272798_135272819	0.0286983	GGAGUGU	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr1_+_155158703_155158776	0.0280554	GGAGUGU	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr1_+_59912972_59913027	0.0279122	GGAGUGU	ENSMUST00000036540.5|Fam117b|ENSMUSG00000041040.6|family with sequence similarity 117, member B
mm10_v2_chr15_+_37233036_37233073	0.0232033	GGAGUGU	ENSMUST00000161405.1|Grhl2|ENSMUSG00000022286.9|grainyhead-like 2 (Drosophila) 	ENSMUST00000022895.8|Grhl2|ENSMUSG00000022286.9|grainyhead-like 2 (Drosophila) 	ENSMUST00000161532.1|Grhl2|ENSMUSG00000022286.9|grainyhead-like 2 (Drosophila)
mm10_v2_chr6_-_85069449_85069523	0.0176378	GGAGUGU	ENSMUST00000160783.1|Exoc6b|ENSMUSG00000033769.10|exocyst complex component 6B 	ENSMUST00000160197.1|Exoc6b|ENSMUSG00000033769.10|exocyst complex component 6B
mm10_v2_chr4_-_133672601_133672652	0.016562	GGAGUGU	ENSMUST00000062118.4|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V 	ENSMUST00000067902.6|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V
mm10_v2_chr11_-_61930246_61930257	0.0161076	GGAGUGU	ENSMUST00000102650.3|Akap10|ENSMUSG00000047804.9|A kinase (PRKA) anchor protein 10
mm10_v2_chr7_-_25718976_25719088	0.0159555	GGAGUGU	ENSMUST00000002683.2|Ccdc97|ENSMUSG00000002608.2|coiled-coil domain containing 97
mm10_v2_chr8_-_84822823_84822823	0.0114447	GGAGUGU	ENSMUST00000065539.4|Dand5|ENSMUSG00000053226.6|DAN domain family, member 5
mm10_v2_chr11_+_69981127_69981214	0.00595822	GGAGUGU	ENSMUST00000108593.1|Ctdnep1|ENSMUSG00000018559.10|CTD nuclear envelope phosphatase 1
mm10_v2_chr3_+_88142328_88142483	0.00127122	GGAGUGU	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
