mm10_v2_chr2_+_84734050_84734107	2.14048	GCUGGUG	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr2_-_163918683_163918683	1.90441	GCUGGUG	ENSMUST00000044734.2|Rims4|ENSMUSG00000035226.5|regulating synaptic membrane exocytosis 4
mm10_v2_chr7_-_38107490_38107534	1.86318	GCUGGUG	ENSMUST00000108023.3|Ccne1|ENSMUSG00000002068.10|cyclin E1
mm10_v2_chr13_+_117220584_117220637	1.64879	GCUGGUG	ENSMUST00000022242.7|Emb|ENSMUSG00000021728.7|embigin
mm10_v2_chr15_+_39198244_39198363	1.49933	GCUGGUG	ENSMUST00000082054.5|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2 	ENSMUST00000042917.9|Rims2|ENSMUSG00000037386.9|regulating synaptic membrane exocytosis 2
mm10_v2_chr10_-_62340514_62340549	1.43634	GCUGGUG	ENSMUST00000099691.4|Hk1|ENSMUSG00000037012.12|hexokinase 1
mm10_v2_chr2_-_157079212_157079276	1.31518	GCUGGUG	ENSMUST00000069098.6|Soga1|ENSMUSG00000055485.6|suppressor of glucose, autophagy associated 1
mm10_v2_chr11_+_44617310_44617336	1.15414	GCUGGUG	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr4_+_49059256_49059330	1.06705	GCUGGUG	ENSMUST00000076670.2|E130309F12Rik|ENSMUSG00000063446.4|RIKEN cDNA E130309F12 gene
mm10_v2_chr11_+_7063423_7063496	1.05912	GCUGGUG	ENSMUST00000020706.4|Adcy1|ENSMUSG00000020431.5|adenylate cyclase 1
mm10_v2_chr5_-_22344690_22344710	0.918377	GCUGGUG	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chr2_+_13573927_13574028	0.853841	GCUGGUG	ENSMUST00000141365.1|Vim|ENSMUSG00000026728.4|vimentin 	ENSMUST00000028062.2|Vim|ENSMUSG00000026728.4|vimentin
mm10_v2_chr1_+_136131382_136131404	0.821832	GCUGGUG	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr6_-_53068562_53068656	0.81986	GCUGGUG	ENSMUST00000074541.5|Jazf1|ENSMUSG00000063568.5|JAZF zinc finger 1
mm10_v2_chrX_-_142966709_142966734	0.816117	GCUGGUG	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr15_-_96642883_96642984	0.812462	GCUGGUG	ENSMUST00000088452.4|Slc38a1|ENSMUSG00000023169.8|solute carrier family 38, member 1
mm10_v2_chr12_-_46818749_46818788	0.79033	GCUGGUG	ENSMUST00000021438.6|Nova1|ENSMUSG00000021047.6|neuro-oncological ventral antigen 1
mm10_v2_chr11_-_69560186_69560213	0.787	GCUGGUG	ENSMUST00000004036.5|Efnb3|ENSMUSG00000003934.5|ephrin B3
mm10_v2_chr10_-_128401218_128401234	0.746895	GCUGGUG	ENSMUST00000042666.5|Slc39a5|ENSMUSG00000039878.6|solute carrier family 39 (metal ion transporter), member 5
mm10_v2_chr13_-_28953690_28953713	0.705121	GCUGGUG	ENSMUST00000067230.5|Sox4|ENSMUSG00000076431.4|SRY-box containing gene 4
mm10_v2_chr5_+_13399309_13399382	0.68114	GCUGGUG	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr2_+_4400958_4400975	0.679077	GCUGGUG	ENSMUST00000075767.7|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr6_+_141249161_141249269	0.665083	GCUGGUG	ENSMUST00000043259.7|Pde3a|ENSMUSG00000041741.8|phosphodiesterase 3A, cGMP inhibited
mm10_v2_chr7_+_126950518_126950584	0.664798	GCUGGUG	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr17_+_47630690_47630690	0.662579	GCUGGUG	ENSMUST00000024779.8|Usp49|ENSMUSG00000090115.1|ubiquitin specific peptidase 49
mm10_v2_chr2_+_32587057_32587123	0.6592	GCUGGUG	ENSMUST00000102818.4|St6galnac4|ENSMUSG00000079442.6|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm10_v2_chr14_+_30479565_30479685	0.641062	GCUGGUG	ENSMUST00000022535.7|Dcp1a|ENSMUSG00000021962.8|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm10_v2_chr3_-_56183678_56183701	0.626594	GCUGGUG	ENSMUST00000029374.6|Nbea|ENSMUSG00000027799.8|neurobeachin
mm10_v2_chr9_-_97111117_97111159	0.623608	GCUGGUG	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr6_-_86669136_86669164	0.622204	GCUGGUG	ENSMUST00000001184.7|Mxd1|ENSMUSG00000001156.7|MAX dimerization protein 1
mm10_v2_chr12_-_109600328_109600348	0.604289	GCUGGUG	ENSMUST00000149046.2|Rtl1|ENSMUSG00000085925.2|retrotransposon-like 1
mm10_v2_chr2_-_32387760_32387797	0.600577	GCUGGUG	ENSMUST00000050785.8|Lcn2|ENSMUSG00000026822.9|lipocalin 2
mm10_v2_chr6_-_29179584_29179584	0.588396	GCUGGUG	ENSMUST00000159200.1|Prrt4|ENSMUSG00000079654.3|proline-rich transmembrane protein 4
mm10_v2_chr2_-_45113255_45113279	0.587237	GCUGGUG	ENSMUST00000068415.4|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000127520.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr1_+_75479529_75479593	0.583574	GCUGGUG	ENSMUST00000113575.2|Tmem198|ENSMUSG00000051703.8|transmembrane protein 198 	ENSMUST00000148980.1|Tmem198|ENSMUSG00000051703.8|transmembrane protein 198 	ENSMUST00000050899.6|Tmem198|ENSMUSG00000051703.8|transmembrane protein 198
mm10_v2_chr12_-_14152038_14152069	0.57018	GCUGGUG	ENSMUST00000020926.6|Fam84a|ENSMUSG00000020607.6|family with sequence similarity 84, member A
mm10_v2_chr3_+_88616133_88616151	0.569683	GCUGGUG	ENSMUST00000176500.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000177498.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr14_-_98169542_98169595	0.566035	GCUGGUG	ENSMUST00000069334.7|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila) 	ENSMUST00000071533.6|Dach1|ENSMUSG00000055639.10|dachshund 1 (Drosophila)
mm10_v2_chr4_-_45084538_45084604	0.560423	GCUGGUG	ENSMUST00000052236.6|Fbxo10|ENSMUSG00000048232.6|F-box protein 10
mm10_v2_chr4_-_70410422_70410463	0.55576	GCUGGUG	ENSMUST00000144099.1|Cdk5rap2|ENSMUSG00000039298.10|CDK5 regulatory subunit associated protein 2
mm10_v2_chr8_-_120589304_120589304	0.552481	GCUGGUG	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr4_-_44167580_44167608	0.541166	GCUGGUG	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr5_-_120777628_120777664	0.538599	GCUGGUG	ENSMUST00000044833.8|Oas3|ENSMUSG00000032661.8|2'-5' oligoadenylate synthetase 3
mm10_v2_chr19_+_10001669_10001703	0.5276	GCUGGUG	ENSMUST00000121418.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1
mm10_v2_chr3_+_88532314_88532396	0.520482	GCUGGUG	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr15_-_50889691_50889714	0.511442	GCUGGUG	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr2_+_162931520_162931536	0.510514	GCUGGUG	ENSMUST00000130411.1|Srsf6|ENSMUSG00000016921.8|serine/arginine-rich splicing factor 6
mm10_v2_chr3_-_104818224_104818242	0.483402	GCUGGUG	ENSMUST00000002297.5|Mov10|ENSMUSG00000002227.9|Moloney leukemia virus 10
mm10_v2_chr4_-_136956784_136956871	0.471303	GCUGGUG	ENSMUST00000030420.8|Epha8|ENSMUSG00000028661.8|Eph receptor A8
mm10_v2_chr15_+_40655020_40655054	0.470636	GCUGGUG	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr4_-_133887765_133887804	0.469132	GCUGGUG	ENSMUST00000003741.9|Rps6ka1|ENSMUSG00000003644.11|ribosomal protein S6 kinase polypeptide 1 	ENSMUST00000105894.4|Rps6ka1|ENSMUSG00000003644.11|ribosomal protein S6 kinase polypeptide 1
mm10_v2_chr13_-_117025505_117025541	0.465029	GCUGGUG	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr11_+_17051818_17051899	0.460362	GCUGGUG	ENSMUST00000058159.5|Cnrip1|ENSMUSG00000044629.5|cannabinoid receptor interacting protein 1
mm10_v2_chr6_-_32588192_32588213	0.45562	GCUGGUG	ENSMUST00000115096.2|Plxna4|ENSMUSG00000029765.10|plexin A4
mm10_v2_chr7_+_99535439_99535498	0.426811	GCUGGUG	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr19_-_46327121_46327156	0.425754	GCUGGUG	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr14_-_19977249_19977253	0.423546	GCUGGUG	ENSMUST00000160013.1|Gng2|ENSMUSG00000043004.7|guanine nucleotide binding protein (G protein), gamma 2
mm10_v2_chr1_+_136467958_136467958	0.419986	GCUGGUG	ENSMUST00000047817.6|Kif14|ENSMUSG00000041498.7|kinesin family member 14
mm10_v2_chr5_+_129501223_129501253	0.419396	GCUGGUG	ENSMUST00000053737.7|Sfswap|ENSMUSG00000029439.10|splicing factor, suppressor of white-apricot homolog (Drosophila)
mm10_v2_chr2_+_125673077_125673133	0.412887	GCUGGUG	ENSMUST00000164756.2|Eid1|ENSMUSG00000091337.2|EP300 interacting inhibitor of differentiation 1
mm10_v2_chr17_-_47924635_47924652	0.403955	GCUGGUG	ENSMUST00000113265.1|Foxp4|ENSMUSG00000023991.10|forkhead box P4
mm10_v2_chr17_-_35188427_35188446	0.385754	GCUGGUG	ENSMUST00000097336.4|Lst1|ENSMUSG00000073412.6|leukocyte specific transcript 1
mm10_v2_chr11_+_75650501_75650544	0.383227	GCUGGUG	ENSMUST00000102505.3|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr12_+_3807017_3807063	0.382873	GCUGGUG	ENSMUST00000020991.8|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000172509.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr11_-_69413675_69413675	0.380151	GCUGGUG	ENSMUST00000094077.4|Kdm6b|ENSMUSG00000018476.7|KDM1 lysine (K)-specific demethylase 6B
mm10_v2_chr5_-_134688568_134688590	0.374914	GCUGGUG	ENSMUST00000015137.3|Limk1|ENSMUSG00000029674.7|LIM-domain containing, protein kinase
mm10_v2_chr4_-_6990774_6990823	0.363884	GCUGGUG	ENSMUST00000039987.3|Tox|ENSMUSG00000041272.5|thymocyte selection-associated high mobility group box
mm10_v2_chr17_+_35861318_35861339	0.345338	GCUGGUG	ENSMUST00000074259.8|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein) 	ENSMUST00000174873.1|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein)
mm10_v2_chr13_-_47106176_47106206	0.342003	GCUGGUG	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr15_+_100761741_100761797	0.338623	GCUGGUG	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr7_+_45163915_45163926	0.336735	GCUGGUG	ENSMUST00000085374.5|Slc17a7|ENSMUSG00000070570.4|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm10_v2_chr10_-_80433615_80433655	0.334002	GCUGGUG	ENSMUST00000105346.3|Tcf3|ENSMUSG00000020167.8|transcription factor 3 	ENSMUST00000020377.6|Tcf3|ENSMUSG00000020167.8|transcription factor 3 	ENSMUST00000105340.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3 	ENSMUST00000020379.6|Tcf3|ENSMUSG00000020167.8|transcription factor 3 	ENSMUST00000105344.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3 	ENSMUST00000105342.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3 	ENSMUST00000105345.3|Tcf3|ENSMUSG00000020167.8|transcription factor 3 	ENSMUST00000105343.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3
mm10_v2_chr7_+_18925863_18925899	0.330196	GCUGGUG	ENSMUST00000172835.1|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2 	ENSMUST00000032571.8|Nova2|ENSMUSG00000030411.9|neuro-oncological ventral antigen 2
mm10_v2_chr18_+_22345089_22345089	0.328968	GCUGGUG	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr6_-_54566484_54566491	0.326994	GCUGGUG	ENSMUST00000019268.4|Scrn1|ENSMUSG00000019124.4|secernin 1
mm10_v2_chr6_-_112696604_112696686	0.322728	GCUGGUG	ENSMUST00000113182.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000113180.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000068487.5|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000077088.4|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae)
mm10_v2_chr10_-_26373956_26374088	0.322389	GCUGGUG	ENSMUST00000105519.3|L3mbtl3|ENSMUSG00000039089.8|l(3)mbt-like 3 (Drosophila) 	ENSMUST00000040219.6|L3mbtl3|ENSMUSG00000039089.8|l(3)mbt-like 3 (Drosophila)
mm10_v2_chr11_-_76399107_76399183	0.32188	GCUGGUG	ENSMUST00000021204.3|Nxn|ENSMUSG00000020844.6|nucleoredoxin
mm10_v2_chr3_+_90341654_90341654	0.32062	GCUGGUG	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr5_+_15934685_15934696	0.319532	GCUGGUG	ENSMUST00000078272.6|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000180204.1|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000167946.2|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000101581.3|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000039370.7|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm10_v2_chr15_-_83595111_83595162	0.317465	GCUGGUG	ENSMUST00000016901.3|Ttll12|ENSMUSG00000016757.4|tubulin tyrosine ligase-like family, member 12
mm10_v2_chr8_+_82863351_82863397	0.316289	GCUGGUG	ENSMUST00000078525.5|Rnf150|ENSMUSG00000047747.9|ring finger protein 150
mm10_v2_chr19_+_40659770_40659802	0.314542	GCUGGUG	ENSMUST00000112231.2|Entpd1|ENSMUSG00000048120.10|ectonucleoside triphosphate diphosphohydrolase 1 	ENSMUST00000127828.1|Entpd1|ENSMUSG00000048120.10|ectonucleoside triphosphate diphosphohydrolase 1
mm10_v2_chr9_+_40686002_40686059	0.314538	GCUGGUG	ENSMUST00000034522.7|Clmp|ENSMUSG00000032024.10|CXADR-like membrane protein
mm10_v2_chr3_+_104789011_104789058	0.311003	GCUGGUG	ENSMUST00000002303.5|Rhoc|ENSMUSG00000002233.7|ras homolog gene family, member C 	ENSMUST00000106787.1|Rhoc|ENSMUSG00000002233.7|ras homolog gene family, member C 	ENSMUST00000176347.1|Rhoc|ENSMUSG00000002233.7|ras homolog gene family, member C
mm10_v2_chr2_+_129198757_129198769	0.309784	GCUGGUG	ENSMUST00000028880.3|Slc20a1|ENSMUSG00000027397.8|solute carrier family 20, member 1
mm10_v2_chr5_+_135187251_135187269	0.3084	GCUGGUG	ENSMUST00000002825.5|Baz1b|ENSMUSG00000002748.6|bromodomain adjacent to zinc finger domain, 1B
mm10_v2_chr10_-_37138863_37138937	0.3001	GCUGGUG	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr2_-_152398046_152398076	0.294589	GCUGGUG	ENSMUST00000063332.8|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12 	ENSMUST00000182625.1|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12
mm10_v2_chr3_-_101110278_101110294	0.29065	GCUGGUG	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr17_-_47611449_47611544	0.290202	GCUGGUG	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr1_+_39367816_39367851	0.288815	GCUGGUG	ENSMUST00000179954.1|Rpl31|ENSMUSG00000073702.5|ribosomal protein L31 	ENSMUST00000178079.1|Rpl31|ENSMUSG00000073702.5|ribosomal protein L31 	ENSMUST00000086535.6|Rpl31|ENSMUSG00000073702.5|ribosomal protein L31
mm10_v2_chr17_-_51832666_51832678	0.2847	GCUGGUG	ENSMUST00000144331.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr5_+_123394782_123394826	0.281156	GCUGGUG	ENSMUST00000111596.1|Mlxip|ENSMUSG00000038342.9|MLX interacting protein 	ENSMUST00000068237.5|Mlxip|ENSMUSG00000038342.9|MLX interacting protein
mm10_v2_chr2_-_153241402_153241426	0.279478	GCUGGUG	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr1_+_178187417_178187713	0.277951	GCUGGUG	ENSMUST00000161075.1|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2 	ENSMUST00000027783.7|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2
mm10_v2_chr1_+_74506044_74506105	0.275309	GCUGGUG	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr4_-_59783800_59783876	0.272191	GCUGGUG	ENSMUST00000107526.1|Inip|ENSMUSG00000038544.8|INTS3 and NABP interacting protein 	ENSMUST00000095063.4|Inip|ENSMUSG00000038544.8|INTS3 and NABP interacting protein
mm10_v2_chr5_+_147430407_147430545	0.268889	GCUGGUG	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr5_+_115429585_115429613	0.263402	GCUGGUG	ENSMUST00000150779.1|Msi1|ENSMUSG00000054256.5|musashi RNA-binding protein 1
mm10_v2_chr10_-_43174521_43174569	0.25723	GCUGGUG	ENSMUST00000040275.7|Sobp|ENSMUSG00000038248.7|sine oculis-binding protein homolog (Drosophila)
mm10_v2_chr5_+_108065742_108065767	0.256442	GCUGGUG	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr8_+_79028587_79028654	0.245498	GCUGGUG	ENSMUST00000119254.1|Zfp827|ENSMUSG00000071064.7|zinc finger protein 827
mm10_v2_chr7_-_34389540_34389638	0.24528	GCUGGUG	ENSMUST00000085585.5|Lsm14a|ENSMUSG00000066568.6|LSM14 homolog A (SCD6, S. cerevisiae)
mm10_v2_chr17_-_49564262_49564337	0.243051	GCUGGUG	ENSMUST00000057610.6|Daam2|ENSMUSG00000040260.7|dishevelled associated activator of morphogenesis 2
mm10_v2_chr7_+_135537814_135537830	0.240551	GCUGGUG	ENSMUST00000073961.6|Ptpre|ENSMUSG00000041836.9|protein tyrosine phosphatase, receptor type, E
mm10_v2_chr12_+_16894894_16894978	0.239829	GCUGGUG	ENSMUST00000020904.6|Rock2|ENSMUSG00000020580.9|Rho-associated coiled-coil containing protein kinase 2
mm10_v2_chr1_-_21079162_21079243	0.239743	GCUGGUG	ENSMUST00000037998.4|Tram2|ENSMUSG00000041779.4|translocating chain-associating membrane protein 2
mm10_v2_chr16_+_58408443_58408523	0.233552	GCUGGUG	ENSMUST00000046663.7|Dcbld2|ENSMUSG00000035107.7|discoidin, CUB and LCCL domain containing 2
mm10_v2_chr11_+_115381906_115381933	0.23145	GCUGGUG	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr13_+_44731265_44731276	0.228612	GCUGGUG	ENSMUST00000173246.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr19_+_47014672_47014698	0.22562	GCUGGUG	ENSMUST00000037636.3|Ina|ENSMUSG00000034336.3|internexin neuronal intermediate filament protein, alpha
mm10_v2_chr3_+_107101551_107101567	0.224624	GCUGGUG	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr3_-_107518001_107518023	0.223864	GCUGGUG	ENSMUST00000169449.1|Slc6a17|ENSMUSG00000027894.8|solute carrier family 6 (neurotransmitter transporter), member 17 	ENSMUST00000029499.8|Slc6a17|ENSMUSG00000027894.8|solute carrier family 6 (neurotransmitter transporter), member 17
mm10_v2_chr14_-_93888732_93888732	0.223672	GCUGGUG	ENSMUST00000068992.2|Pcdh9|ENSMUSG00000055421.3|protocadherin 9
mm10_v2_chr17_-_17624458_17624496	0.222707	GCUGGUG	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr5_-_25498702_25498745	0.219644	GCUGGUG	ENSMUST00000173073.1|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C 	ENSMUST00000045291.7|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C
mm10_v2_chr9_+_44334685_44334715	0.218148	GCUGGUG	ENSMUST00000052686.2|H2afx|ENSMUSG00000049932.2|H2A histone family, member X
mm10_v2_chr2_+_121955964_121956001	0.211475	GCUGGUG	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr2_+_164074122_164074218	0.21104	GCUGGUG	ENSMUST00000018353.7|Stk4|ENSMUSG00000018209.9|serine/threonine kinase 4
mm10_v2_chr19_+_41482632_41482688	0.208548	GCUGGUG	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr9_+_106170918_106170953	0.206972	GCUGGUG	ENSMUST00000020490.5|Wdr82|ENSMUSG00000020257.6|WD repeat domain containing 82
mm10_v2_chr1_-_36558349_36558366	0.204435	GCUGGUG	ENSMUST00000114991.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000114992.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr15_-_68258787_68258880	0.199275	GCUGGUG	ENSMUST00000162173.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing 	ENSMUST00000160248.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing 	ENSMUST00000159430.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing 	ENSMUST00000162054.1|Zfat|ENSMUSG00000022335.10|zinc finger and AT hook domain containing
mm10_v2_chrX_+_6779306_6779306	0.198726	GCUGGUG	ENSMUST00000067410.7|Dgkk|ENSMUSG00000062393.7|diacylglycerol kinase kappa
mm10_v2_chr8_+_4493022_4493199	0.198169	GCUGGUG	ENSMUST00000177010.2|Cers4|ENSMUSG00000008206.9|ceramide synthase 4 	ENSMUST00000176042.1|Cers4|ENSMUSG00000008206.9|ceramide synthase 4 	ENSMUST00000008350.9|Cers4|ENSMUSG00000008206.9|ceramide synthase 4
mm10_v2_chr11_-_119547744_119547759	0.198051	GCUGGUG	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr17_+_47505117_47505132	0.196053	GCUGGUG	ENSMUST00000183044.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3 	ENSMUST00000037333.10|Ccnd3|ENSMUSG00000034165.10|cyclin D3
mm10_v2_chr1_-_119837613_119837673	0.195425	GCUGGUG	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr11_+_57518657_57518722	0.184964	GCUGGUG	ENSMUST00000108849.1|Mfap3|ENSMUSG00000020522.7|microfibrillar-associated protein 3 	ENSMUST00000020830.7|Mfap3|ENSMUSG00000020522.7|microfibrillar-associated protein 3
mm10_v2_chr7_+_66839752_66839813	0.180897	GCUGGUG	ENSMUST00000107478.1|Adamts17|ENSMUSG00000058145.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm10_v2_chr2_+_158028687_158028729	0.173769	GCUGGUG	ENSMUST00000109518.1|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B 	ENSMUST00000029180.7|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B
mm10_v2_chr4_+_65124174_65124174	0.173158	GCUGGUG	ENSMUST00000084501.3|Pappa|ENSMUSG00000028370.7|pregnancy-associated plasma protein A
mm10_v2_chr4_+_120854786_120854843	0.172591	GCUGGUG	ENSMUST00000071093.2|Rims3|ENSMUSG00000032890.11|regulating synaptic membrane exocytosis 3
mm10_v2_chr11_+_43682038_43682060	0.16462	GCUGGUG	ENSMUST00000094294.4|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr2_-_32353247_32353282	0.162951	GCUGGUG	ENSMUST00000078352.5|Dnm1|ENSMUSG00000026825.11|dynamin 1 	ENSMUST00000113352.2|Dnm1|ENSMUSG00000026825.11|dynamin 1 	ENSMUST00000113365.1|Dnm1|ENSMUSG00000026825.11|dynamin 1
mm10_v2_chr15_-_79687776_79687894	0.161254	GCUGGUG	ENSMUST00000023061.5|Josd1|ENSMUSG00000022426.5|Josephin domain containing 1
mm10_v2_chr7_+_19119853_19119913	0.155392	GCUGGUG	ENSMUST00000053109.3|Fbxo46|ENSMUSG00000050428.6|F-box protein 46
mm10_v2_chr4_+_59805829_59805914	0.154758	GCUGGUG	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr15_+_81744848_81744848	0.154529	GCUGGUG	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr1_+_64532790_64532815	0.153165	GCUGGUG	ENSMUST00000049932.5|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000087366.4|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000171164.1|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1
mm10_v2_chr6_-_47594967_47595047	0.150997	GCUGGUG	ENSMUST00000081721.6|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114618.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114616.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila)
mm10_v2_chr2_-_151741236_151741310	0.146892	GCUGGUG	ENSMUST00000042452.4|Psmf1|ENSMUSG00000032869.9|proteasome (prosome, macropain) inhibitor subunit 1
mm10_v2_chr9_-_107635330_107635353	0.14554	GCUGGUG	ENSMUST00000055704.6|Gnai2|ENSMUSG00000032562.8|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm10_v2_chr8_-_69996326_69996379	0.140819	GCUGGUG	ENSMUST00000177851.1|Gatad2a|ENSMUSG00000036180.8|GATA zinc finger domain containing 2A 	ENSMUST00000065169.4|Gatad2a|ENSMUSG00000036180.8|GATA zinc finger domain containing 2A
mm10_v2_chr10_+_96616998_96617015	0.139859	GCUGGUG	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr8_-_119840522_119840579	0.135673	GCUGGUG	ENSMUST00000168698.1|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium) 	ENSMUST00000034285.6|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium)
mm10_v2_chr2_+_10372426_10372497	0.131252	GCUGGUG	ENSMUST00000114864.2|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2 	ENSMUST00000116594.2|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2 	ENSMUST00000041105.6|Sfmbt2|ENSMUSG00000061186.9|Scm-like with four mbt domains 2
mm10_v2_chr7_-_128237984_128238031	0.130327	GCUGGUG	ENSMUST00000078816.3|9130023H24Rik|ENSMUSG00000062944.3|RIKEN cDNA 9130023H24 gene
mm10_v2_chr3_-_50443603_50443615	0.130117	GCUGGUG	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr15_-_79062866_79062941	0.130073	GCUGGUG	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr12_+_112146187_112146222	0.128776	GCUGGUG	ENSMUST00000128402.2|Kif26a|ENSMUSG00000021294.7|kinesin family member 26A
mm10_v2_chr18_+_69345721_69345811	0.12843	GCUGGUG	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr7_+_45413657_45413705	0.122689	GCUGGUG	ENSMUST00000058879.6|Ntf5|ENSMUSG00000074121.2|neurotrophin 5
mm10_v2_chr8_+_22859528_22859554	0.12206	GCUGGUG	ENSMUST00000110696.1|Kat6a|ENSMUSG00000031540.7|K(lysine) acetyltransferase 6A 	ENSMUST00000044331.6|Kat6a|ENSMUSG00000031540.7|K(lysine) acetyltransferase 6A
mm10_v2_chr6_-_112489808_112489828	0.120539	GCUGGUG	ENSMUST00000053306.6|Oxtr|ENSMUSG00000049112.8|oxytocin receptor
mm10_v2_chr14_+_25459206_25459225	0.120005	GCUGGUG	ENSMUST00000162645.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr11_-_84525514_84525542	0.119833	GCUGGUG	ENSMUST00000018842.7|Lhx1|ENSMUSG00000018698.9|LIM homeobox protein 1
mm10_v2_chr8_-_72548224_72548310	0.11601	GCUGGUG	ENSMUST00000058534.5|Med26|ENSMUSG00000045248.5|mediator complex subunit 26
mm10_v2_chr5_+_66968416_66968447	0.115787	GCUGGUG	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr3_+_51415986_51416044	0.111408	GCUGGUG	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr10_-_75560330_75560330	0.106107	GCUGGUG	ENSMUST00000051129.9|Fam211b|ENSMUSG00000046807.9|family with sequence similarity 211, member B
mm10_v2_chr3_+_28263205_28263215	0.0993319	GCUGGUG	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chr10_-_81230773_81230833	0.0935795	GCUGGUG	ENSMUST00000047408.4|Atcay|ENSMUSG00000034958.5|ataxia, cerebellar, Cayman type homolog (human)
mm10_v2_chr2_-_125123618_125123661	0.0896432	GCUGGUG	ENSMUST00000142718.1|Myef2|ENSMUSG00000027201.10|myelin basic protein expression factor 2, repressor 	ENSMUST00000152367.1|Myef2|ENSMUSG00000027201.10|myelin basic protein expression factor 2, repressor 	ENSMUST00000067780.3|Myef2|ENSMUSG00000027201.10|myelin basic protein expression factor 2, repressor 	ENSMUST00000147105.1|Myef2|ENSMUSG00000027201.10|myelin basic protein expression factor 2, repressor
mm10_v2_chr17_-_84466186_84466245	0.0886533	GCUGGUG	ENSMUST00000047524.8|Thada|ENSMUSG00000024251.9|thyroid adenoma associated
mm10_v2_chr2_+_5951440_5951469	0.0877612	GCUGGUG	ENSMUST00000060092.6|Upf2|ENSMUSG00000043241.8|UPF2 regulator of nonsense transcripts homolog (yeast)
mm10_v2_chr14_-_101609033_101609191	0.087557	GCUGGUG	ENSMUST00000161991.1|Tbc1d4|ENSMUSG00000033083.10|TBC1 domain family, member 4 	ENSMUST00000100340.3|Tbc1d4|ENSMUSG00000033083.10|TBC1 domain family, member 4
mm10_v2_chr9_-_65827544_65827576	0.0868837	GCUGGUG	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr4_-_34882919_34882964	0.0853898	GCUGGUG	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr2_+_150909565_150909642	0.0846411	GCUGGUG	ENSMUST00000028948.4|Gins1|ENSMUSG00000027454.4|GINS complex subunit 1 (Psf1 homolog)
mm10_v2_chr2_+_48814109_48814173	0.0843424	GCUGGUG	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chr1_+_85894281_85894281	0.0808698	GCUGGUG	ENSMUST00000027425.9|Itm2c|ENSMUSG00000026223.9|integral membrane protein 2C
mm10_v2_chr5_+_134099704_134099760	0.0799054	GCUGGUG	ENSMUST00000016088.8|Gatsl2|ENSMUSG00000015944.8|GATS protein-like 2
mm10_v2_chrX_-_136172233_136172342	0.0788188	GCUGGUG	ENSMUST00000163584.1|Tceal8|ENSMUSG00000051579.4|transcription elongation factor A (SII)-like 8 	ENSMUST00000060101.3|Tceal8|ENSMUSG00000051579.4|transcription elongation factor A (SII)-like 8
mm10_v2_chr16_+_56075399_56075492	0.078366	GCUGGUG	ENSMUST00000089362.2|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000089360.3|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7 	ENSMUST00000049128.6|Senp7|ENSMUSG00000052917.8|SUMO1/sentrin specific peptidase 7
mm10_v2_chr10_+_40349265_40349387	0.0778715	GCUGGUG	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr15_+_80711292_80711340	0.075967	GCUGGUG	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr13_-_69533839_69533839	0.0748322	GCUGGUG	ENSMUST00000044081.7|Papd7|ENSMUSG00000034575.7|PAP associated domain containing 7
mm10_v2_chr3_+_97032416_97032432	0.0732987	GCUGGUG	ENSMUST00000132256.1|Gja5|ENSMUSG00000057123.8|gap junction protein, alpha 5 	ENSMUST00000072600.6|Gja5|ENSMUSG00000057123.8|gap junction protein, alpha 5
mm10_v2_chr13_-_103334429_103334500	0.0732718	GCUGGUG	ENSMUST00000167058.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4 	ENSMUST00000164111.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr12_-_101819048_101819061	0.0726928	GCUGGUG	ENSMUST00000021603.8|Fbln5|ENSMUSG00000021186.8|fibulin 5
mm10_v2_chr11_-_116027961_116027978	0.07244	GCUGGUG	ENSMUST00000106454.1|H3f3b|ENSMUSG00000016559.8|H3 histone, family 3B
mm10_v2_chr9_+_107587711_107587746	0.0702661	GCUGGUG	ENSMUST00000010192.5|Ifrd2|ENSMUSG00000010048.5|interferon-related developmental regulator 2
mm10_v2_chr13_+_34875488_34875515	0.0696917	GCUGGUG	ENSMUST00000077853.3|Prpf4b|ENSMUSG00000021413.8|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm10_v2_chr5_+_144190284_144190334	0.0684377	GCUGGUG	ENSMUST00000060747.7|Bhlha15|ENSMUSG00000052271.7|basic helix-loop-helix family, member a15
mm10_v2_chr11_-_116694802_116694882	0.0661526	GCUGGUG	ENSMUST00000079545.5|St6galnac2|ENSMUSG00000057286.5|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
mm10_v2_chr11_+_74830920_74831005	0.0659835	GCUGGUG	ENSMUST00000000291.2|Mnt|ENSMUSG00000000282.6|max binding protein
mm10_v2_chr15_+_59374198_59374279	0.0645577	GCUGGUG	ENSMUST00000079703.3|Nsmce2|ENSMUSG00000059586.3|non-SMC element 2 homolog (MMS21, S. cerevisiae) 	ENSMUST00000168722.1|Nsmce2|ENSMUSG00000059586.3|non-SMC element 2 homolog (MMS21, S. cerevisiae)
mm10_v2_chr2_-_79456750_79456761	0.0628463	GCUGGUG	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr4_+_155891822_155891892	0.0622586	GCUGGUG	ENSMUST00000105584.3|Acap3|ENSMUSG00000029033.10|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 	ENSMUST00000079031.5|Acap3|ENSMUSG00000029033.10|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm10_v2_chr13_+_111686178_111686210	0.0617859	GCUGGUG	ENSMUST00000109272.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr9_-_21091974_21092007	0.0611625	GCUGGUG	ENSMUST00000115487.1|Raver1|ENSMUSG00000010205.10|ribonucleoprotein, PTB-binding 1
mm10_v2_chr3_+_141465564_141465574	0.0610343	GCUGGUG	ENSMUST00000106236.2|Unc5c|ENSMUSG00000059921.9|unc-5 homolog C (C. elegans) 	ENSMUST00000075282.3|Unc5c|ENSMUSG00000059921.9|unc-5 homolog C (C. elegans)
mm10_v2_chr2_-_84886692_84886710	0.0602658	GCUGGUG	ENSMUST00000054514.5|Rtn4rl2|ENSMUSG00000050896.6|reticulon 4 receptor-like 2 	ENSMUST00000151799.1|Rtn4rl2|ENSMUSG00000050896.6|reticulon 4 receptor-like 2
mm10_v2_chr2_-_30474199_30474222	0.0560454	GCUGGUG	ENSMUST00000065134.2|Ier5l|ENSMUSG00000089762.2|immediate early response 5-like
mm10_v2_chr17_-_42876417_42876431	0.0552183	GCUGGUG	ENSMUST00000024709.7|Cd2ap|ENSMUSG00000061665.6|CD2-associated protein
mm10_v2_chr1_-_88702121_88702221	0.051316	GCUGGUG	ENSMUST00000159814.1|Arl4c|ENSMUSG00000049866.6|ADP-ribosylation factor-like 4C
mm10_v2_chr13_+_54949388_54949481	0.0493505	GCUGGUG	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr7_-_118243564_118243641	0.0492594	GCUGGUG	ENSMUST00000179047.1|Smg1|ENSMUSG00000030655.8|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) 	ENSMUST00000032891.8|Smg1|ENSMUSG00000030655.8|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm10_v2_chr11_+_78094660_78094678	0.0474236	GCUGGUG	ENSMUST00000073705.5|Fam222b|ENSMUSG00000037750.10|family with sequence similarity 222, member B
mm10_v2_chr2_-_167631972_167632095	0.0473469	GCUGGUG	ENSMUST00000060645.6|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000140216.1|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000151365.1|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000109207.3|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1
mm10_v2_chr4_-_126468580_126468653	0.0473	GCUGGUG	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr16_-_16146771_16146851	0.0467469	GCUGGUG	ENSMUST00000040248.7|Spidr|ENSMUSG00000041974.9|scaffolding protein involved i DNA repair
mm10_v2_chr9_-_58313189_58313212	0.0460945	GCUGGUG	ENSMUST00000061799.8|Loxl1|ENSMUSG00000032334.9|lysyl oxidase-like 1
mm10_v2_chr9_-_96889381_96889474	0.045808	GCUGGUG	ENSMUST00000112951.2|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2 	ENSMUST00000126411.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2 	ENSMUST00000078478.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2 	ENSMUST00000119141.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2 	ENSMUST00000120101.1|Acpl2|ENSMUSG00000043587.9|acid phosphatase-like 2
mm10_v2_chr2_+_157914618_157914653	0.0445818	GCUGGUG	ENSMUST00000109523.1|Vstm2l|ENSMUSG00000037843.6|V-set and transmembrane domain containing 2-like
mm10_v2_chr4_-_121017201_121017261	0.0440153	GCUGGUG	ENSMUST00000043200.7|Smap2|ENSMUSG00000032870.8|small ArfGAP 2
mm10_v2_chr19_+_5689131_5689131	0.0418839	GCUGGUG	ENSMUST00000004156.8|Map3k11|ENSMUSG00000004054.8|mitogen-activated protein kinase kinase kinase 11
mm10_v2_chr3_-_103791537_103791563	0.0393483	GCUGGUG	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr9_+_96119362_96119437	0.0378671	GCUGGUG	ENSMUST00000085217.5|Gk5|ENSMUSG00000041440.12|glycerol kinase 5 (putative) 	ENSMUST00000122383.1|Gk5|ENSMUSG00000041440.12|glycerol kinase 5 (putative)
mm10_v2_chr9_+_46282997_46283024	0.0361444	GCUGGUG	ENSMUST00000074957.3|Bud13|ENSMUSG00000032077.4|BUD13 homolog (yeast)
mm10_v2_chr8_+_11312805_11312887	0.0345695	GCUGGUG	ENSMUST00000033899.7|Col4a2|ENSMUSG00000031503.7|collagen, type IV, alpha 2
mm10_v2_chr3_-_133544390_133544412	0.0324247	GCUGGUG	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr8_+_119910792_119910857	0.0300448	GCUGGUG	ENSMUST00000108988.2|Usp10|ENSMUSG00000031826.13|ubiquitin specific peptidase 10 	ENSMUST00000127664.1|Gm20388|ENSMUSG00000092329.1|predicted gene 20388 	ENSMUST00000108982.4|Usp10|ENSMUSG00000031826.13|ubiquitin specific peptidase 10
mm10_v2_chr12_+_86241848_86241936	0.0254998	GCUGGUG	ENSMUST00000071106.4|Gpatch2l|ENSMUSG00000021254.8|G patch domain containing 2 like
mm10_v2_chr12_+_76324860_76324898	0.0247099	GCUGGUG	ENSMUST00000095610.2|Akap5|ENSMUSG00000021057.9|A kinase (PRKA) anchor protein 5 	ENSMUST00000154078.2|Akap5|ENSMUSG00000021057.9|A kinase (PRKA) anchor protein 5
mm10_v2_chr3_+_138065052_138065078	0.024298	GCUGGUG	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr13_+_21478907_21478907	0.0222193	GCUGGUG	ENSMUST00000062609.5|Zkscan4|ENSMUSG00000054931.6|zinc finger with KRAB and SCAN domains 4
mm10_v2_chr2_-_39190687_39190746	0.0219606	GCUGGUG	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr5_-_116591811_116591830	0.019986	GCUGGUG	ENSMUST00000076124.5|Srrm4|ENSMUSG00000063919.6|serine/arginine repetitive matrix 4
mm10_v2_chr15_+_66577536_66577637	0.0196419	GCUGGUG	ENSMUST00000048188.8|Phf20l1|ENSMUSG00000072501.4|PHD finger protein 20-like 1
mm10_v2_chr6_+_120364094_120364163	0.0196092	GCUGGUG	ENSMUST00000100996.3|Kdm5a|ENSMUSG00000030180.9|lysine (K)-specific demethylase 5A 	ENSMUST00000005108.7|Kdm5a|ENSMUSG00000030180.9|lysine (K)-specific demethylase 5A
mm10_v2_chr1_+_192190771_192190821	0.0170124	GCUGGUG	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr18_+_12972225_12972314	0.0159776	GCUGGUG	ENSMUST00000025290.5|Impact|ENSMUSG00000024423.5|imprinted and ancient
mm10_v2_chr4_-_134287215_134287258	0.0147394	GCUGGUG	ENSMUST00000145006.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105877.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000127857.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105876.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like
mm10_v2_chr17_+_27856443_27856511	0.0142943	GCUGGUG	ENSMUST00000114849.1|Uhrf1bp1|ENSMUSG00000039512.11|UHRF1 (ICBP90) binding protein 1
mm10_v2_chr11_-_59228162_59228270	0.013717	GCUGGUG	ENSMUST00000163300.1|Arf1|ENSMUSG00000048076.8|ADP-ribosylation factor 1 	ENSMUST00000061242.7|Arf1|ENSMUSG00000048076.8|ADP-ribosylation factor 1
mm10_v2_chr4_-_132422484_132422497	0.0135769	GCUGGUG	ENSMUST00000102568.3|Phactr4|ENSMUSG00000066043.7|phosphatase and actin regulator 4
mm10_v2_chr12_-_84970814_84970900	0.0132509	GCUGGUG	ENSMUST00000165886.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1 	ENSMUST00000167448.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1 	ENSMUST00000043169.7|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1
mm10_v2_chrX_+_73673150_73673242	0.0115606	GCUGGUG	ENSMUST00000033752.7|Slc6a8|ENSMUSG00000019558.8|solute carrier family 6 (neurotransmitter transporter, creatine), member 8 	ENSMUST00000114467.2|Slc6a8|ENSMUSG00000019558.8|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm10_v2_chr2_-_119477613_119477705	0.0113869	GCUGGUG	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr4_-_126202757_126202762	0.0109348	GCUGGUG	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr8_+_11556061_11556099	0.00922589	GCUGGUG	ENSMUST00000054399.4|Ing1|ENSMUSG00000045969.7|inhibitor of growth family, member 1
mm10_v2_chr16_-_97170707_97170759	0.00756435	GCUGGUG	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr8_-_29219338_29219338	0.00692692	GCUGGUG	ENSMUST00000168630.2|Unc5d|ENSMUSG00000063626.5|unc-5 homolog D (C. elegans)
mm10_v2_chr9_+_121898458_121898466	0.00554422	GCUGGUG	ENSMUST00000050327.3|Ackr2|ENSMUSG00000044534.7|atypical chemokine receptor 2
mm10_v2_chr14_+_119138415_119138415	0.00414112	GCUGGUG	ENSMUST00000065904.3|Hs6st3|ENSMUSG00000053465.5|heparan sulfate 6-O-sulfotransferase 3
mm10_v2_chr6_+_108660616_108660682	0.00413197	GCUGGUG	ENSMUST00000032194.4|Bhlhe40|ENSMUSG00000030103.5|basic helix-loop-helix family, member e40
mm10_v2_chr12_-_79296266_79296310	0.00330545	GCUGGUG	ENSMUST00000021547.6|Zfyve26|ENSMUSG00000066440.4|zinc finger, FYVE domain containing 26
mm10_v2_chr13_+_80883403_80883422	0.00318051	GCUGGUG	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr2_+_74681991_74682007	0.00278716	GCUGGUG	ENSMUST00000142312.1|Hoxd11|ENSMUSG00000042499.12|homeobox D11
mm10_v2_chr2_-_30124454_30124470	0.000741213	GCUGGUG	ENSMUST00000044751.8|Zer1|ENSMUSG00000039686.8|zyg-11 related, cell cycle regulator
