mm10_v2_chr8_-_80739497_80739497	0.426439	GCUACAU	ENSMUST00000043359.8|Smarca5|ENSMUSG00000031715.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm10_v2_chr3_+_14886426_14886426	0.408136	GCUACAU	ENSMUST00000029078.7|Car2|ENSMUSG00000027562.7|carbonic anhydrase 2
mm10_v2_chr2_+_122028544_122028563	0.368916	GCUACAU	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chrX_-_142966709_142966734	0.304014	GCUACAU	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr1_-_134079114_134079120	0.277995	GCUACAU	ENSMUST00000020692.6|Btg2|ENSMUSG00000020423.6|B cell translocation gene 2, anti-proliferative
mm10_v2_chr3_+_28781305_28781344	0.277702	GCUACAU	ENSMUST00000060500.7|Eif5a2|ENSMUSG00000050192.7|eukaryotic translation initiation factor 5A2
mm10_v2_chr13_+_111686178_111686210	0.267332	GCUACAU	ENSMUST00000109272.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chrX_+_138914422_138914438	0.266731	GCUACAU	ENSMUST00000064937.7|Nrk|ENSMUSG00000052854.9|Nik related kinase 	ENSMUST00000113052.1|Nrk|ENSMUSG00000052854.9|Nik related kinase
mm10_v2_chr4_+_136172367_136172395	0.266287	GCUACAU	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr3_-_103791537_103791563	0.266178	GCUACAU	ENSMUST00000118317.1|Hipk1|ENSMUSG00000008730.11|homeodomain interacting protein kinase 1
mm10_v2_chr3_+_132085281_132085299	0.255785	GCUACAU	ENSMUST00000029665.5|Dkk2|ENSMUSG00000028031.5|dickkopf homolog 2 (Xenopus laevis)
mm10_v2_chr7_+_66109474_66109515	0.242594	GCUACAU	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr5_+_75574916_75575001	0.237724	GCUACAU	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr1_-_180813591_180813632	0.231623	GCUACAU	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr4_-_59549314_59549364	0.22296	GCUACAU	ENSMUST00000148331.2|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3 	ENSMUST00000030076.5|Ptbp3|ENSMUSG00000028382.9|polypyrimidine tract binding protein 3
mm10_v2_chr10_-_62880014_62880014	0.222101	GCUACAU	ENSMUST00000050826.7|Tet1|ENSMUSG00000047146.9|tet methylcytosine dioxygenase 1
mm10_v2_chrX_+_68678541_68678554	0.214611	GCUACAU	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr13_-_111490111_111490139	0.203846	GCUACAU	ENSMUST00000047627.7|Gpbp1|ENSMUSG00000032745.11|GC-rich promoter binding protein 1
mm10_v2_chr19_+_60755947_60755987	0.200332	GCUACAU	ENSMUST00000088237.4|Nanos1|ENSMUSG00000072437.3|nanos homolog 1 (Drosophila)
mm10_v2_chr16_-_8792302_8792326	0.196068	GCUACAU	ENSMUST00000160405.1|Usp7|ENSMUSG00000022710.11|ubiquitin specific peptidase 7
mm10_v2_chr6_+_134920401_134920434	0.179209	GCUACAU	ENSMUST00000067327.4|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B 	ENSMUST00000003115.6|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B
mm10_v2_chr4_+_8691303_8691380	0.175404	GCUACAU	ENSMUST00000051558.3|Chd7|ENSMUSG00000041235.5|chromodomain helicase DNA binding protein 7
mm10_v2_chr5_+_121397936_121398004	0.17309	GCUACAU	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr3_+_88532314_88532396	0.172772	GCUACAU	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr15_-_50889691_50889714	0.160793	GCUACAU	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr3_+_65528404_65528431	0.158854	GCUACAU	ENSMUST00000047906.3|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr18_-_43477764_43477836	0.153932	GCUACAU	ENSMUST00000057110.9|Eif3j2|ENSMUSG00000043424.9|eukaryotic translation initiation factor 3, subunit J2
mm10_v2_chr3_-_127409044_127409064	0.152488	GCUACAU	ENSMUST00000182704.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr10_+_86300372_86300372	0.150762	GCUACAU	ENSMUST00000020234.7|Timp3|ENSMUSG00000020044.7|tissue inhibitor of metalloproteinase 3
mm10_v2_chr17_+_88440711_88440741	0.149445	GCUACAU	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr1_+_134415378_134415395	0.148194	GCUACAU	ENSMUST00000027727.8|Adipor1|ENSMUSG00000026457.8|adiponectin receptor 1
mm10_v2_chr3_+_101377074_101377158	0.145853	GCUACAU	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chr14_-_69284982_69285112	0.144295	GCUACAU	ENSMUST00000183882.1|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37 	ENSMUST00000037064.4|Slc25a37|ENSMUSG00000034248.7|solute carrier family 25, member 37
mm10_v2_chr10_+_58446845_58446928	0.139807	GCUACAU	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr13_+_46418266_46418316	0.138202	GCUACAU	ENSMUST00000037923.3|Rbm24|ENSMUSG00000038132.5|RNA binding motif protein 24
mm10_v2_chr1_+_138963709_138963808	0.131203	GCUACAU	ENSMUST00000168527.1|Dennd1b|ENSMUSG00000056268.9|DENN/MADD domain containing 1B
mm10_v2_chr7_+_110018301_110018425	0.130787	GCUACAU	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chr11_+_104608000_104608012	0.129289	GCUACAU	ENSMUST00000021028.4|Itgb3|ENSMUSG00000020689.4|integrin beta 3
mm10_v2_chr7_+_16309577_16309641	0.128771	GCUACAU	ENSMUST00000002152.6|Bbc3|ENSMUSG00000002083.6|BCL2 binding component 3
mm10_v2_chr4_-_41314877_41314889	0.125722	GCUACAU	ENSMUST00000030145.8|Dcaf12|ENSMUSG00000028436.8|DDB1 and CUL4 associated factor 12
mm10_v2_chr2_+_75659253_75659318	0.125637	GCUACAU	ENSMUST00000111964.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111962.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111961.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000164947.2|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000090792.4|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3
mm10_v2_chr17_-_42876417_42876431	0.12477	GCUACAU	ENSMUST00000024709.7|Cd2ap|ENSMUSG00000061665.6|CD2-associated protein
mm10_v2_chr2_+_75832168_75832194	0.120863	GCUACAU	ENSMUST00000047232.7|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase 	ENSMUST00000111952.2|Agps|ENSMUSG00000042410.9|alkylglycerone phosphate synthase
mm10_v2_chr19_+_36554661_36554688	0.120585	GCUACAU	ENSMUST00000169036.2|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2 	ENSMUST00000047247.5|Hectd2|ENSMUSG00000041180.7|HECT domain containing 2
mm10_v2_chr9_-_72111827_72111895	0.119882	GCUACAU	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr12_-_55821157_55821195	0.119841	GCUACAU	ENSMUST00000110687.1|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1 	ENSMUST00000085385.5|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1
mm10_v2_chr8_+_92357787_92357801	0.112385	GCUACAU	ENSMUST00000034184.10|Irx5|ENSMUSG00000031737.10|Iroquois related homeobox 5 (Drosophila)
mm10_v2_chr12_+_4917376_4917438	0.11039	GCUACAU	ENSMUST00000045664.5|Atad2b|ENSMUSG00000052812.4|ATPase family, AAA domain containing 2B
mm10_v2_chr5_+_146231211_146231385	0.110322	GCUACAU	ENSMUST00000161181.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000161652.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000031640.8|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000159467.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8
mm10_v2_chr17_-_10319324_10319380	0.108691	GCUACAU	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr10_+_40349265_40349387	0.108476	GCUACAU	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr6_-_97179100_97179159	0.106404	GCUACAU	ENSMUST00000095664.3|Tmf1|ENSMUSG00000030059.9|TATA element modulatory factor 1
mm10_v2_chr12_-_91590009_91590056	0.105601	GCUACAU	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr9_+_72532214_72532271	0.104972	GCUACAU	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr5_-_67427794_67427813	0.103006	GCUACAU	ENSMUST00000169190.1|Bend4|ENSMUSG00000092060.1|BEN domain containing 4
mm10_v2_chr2_+_153741274_153741294	0.100921	GCUACAU	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr7_+_91090697_91090727	0.0997136	GCUACAU	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr18_-_58209926_58210067	0.0994857	GCUACAU	ENSMUST00000025497.6|Fbn2|ENSMUSG00000024598.8|fibrillin 2
mm10_v2_chr14_+_14012491_14012693	0.0989048	GCUACAU	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chr1_-_151428440_151428474	0.098422	GCUACAU	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr17_-_44736648_44736674	0.0980944	GCUACAU	ENSMUST00000113572.2|Runx2|ENSMUSG00000039153.10|runt related transcription factor 2
mm10_v2_chr11_-_116853083_116853099	0.0970515	GCUACAU	ENSMUST00000092404.6|Srsf2|ENSMUSG00000034120.12|serine/arginine-rich splicing factor 2
mm10_v2_chr7_-_132813799_132813905	0.0965969	GCUACAU	ENSMUST00000097998.2|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr8_-_85555261_85555315	0.0953774	GCUACAU	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr18_+_35598607_35598653	0.0951943	GCUACAU	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr14_+_56887795_56887795	0.0886772	GCUACAU	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr3_-_119783262_119783388	0.0880329	GCUACAU	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr3_-_62506970_62507027	0.0833485	GCUACAU	ENSMUST00000029336.4|Dhx36|ENSMUSG00000027770.4|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm10_v2_chr2_-_60125651_60125775	0.0825877	GCUACAU	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chrX_-_108834303_108834381	0.0824398	GCUACAU	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr7_-_143460989_143461050	0.0810878	GCUACAU	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr8_+_54954728_54954820	0.0805714	GCUACAU	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr4_-_153482768_153482811	0.0800416	GCUACAU	ENSMUST00000105646.2|Ajap1|ENSMUSG00000039546.9|adherens junction associated protein 1
mm10_v2_chr4_-_56990332_56990396	0.0768329	GCUACAU	ENSMUST00000053681.5|Frrs1l|ENSMUSG00000045589.7|ferric-chelate reductase 1 like
mm10_v2_chr14_-_67072465_67072476	0.0753959	GCUACAU	ENSMUST00000089230.5|Ppp2r2a|ENSMUSG00000022052.8|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm10_v2_chr5_+_105876532_105876585	0.0751228	GCUACAU	ENSMUST00000150440.1|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326 	ENSMUST00000031227.4|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326
mm10_v2_chr13_-_48968004_48968029	0.0720808	GCUACAU	ENSMUST00000060805.6|Fam120a|ENSMUSG00000038014.7|family with sequence similarity 120, member A
mm10_v2_chr6_+_38433913_38433965	0.0693806	GCUACAU	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chr3_+_30792876_30792876	0.069048	GCUACAU	ENSMUST00000029256.7|Sec62|ENSMUSG00000027706.7|SEC62 homolog (S. cerevisiae)
mm10_v2_chr17_-_47611449_47611544	0.0686892	GCUACAU	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr5_+_86804214_86804276	0.0680665	GCUACAU	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr2_-_104494400_104494463	0.0678316	GCUACAU	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr6_+_141249161_141249269	0.0672403	GCUACAU	ENSMUST00000043259.7|Pde3a|ENSMUSG00000041741.8|phosphodiesterase 3A, cGMP inhibited
mm10_v2_chr9_+_101074727_101074727	0.0630998	GCUACAU	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chr7_+_97579868_97579901	0.0617904	GCUACAU	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr2_-_70825726_70825820	0.0611993	GCUACAU	ENSMUST00000038584.8|Tlk1|ENSMUSG00000041997.10|tousled-like kinase 1
mm10_v2_chr4_-_134287215_134287258	0.0588108	GCUACAU	ENSMUST00000145006.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105877.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000127857.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105876.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like
mm10_v2_chr19_+_21272276_21272296	0.057835	GCUACAU	ENSMUST00000025659.4|Zfand5|ENSMUSG00000024750.4|zinc finger, AN1-type domain 5
mm10_v2_chr1_-_64121456_64121491	0.0564519	GCUACAU	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr11_+_45852031_45852051	0.0558045	GCUACAU	ENSMUST00000109261.3|Clint1|ENSMUSG00000006169.13|clathrin interactor 1 	ENSMUST00000109260.1|Clint1|ENSMUSG00000006169.13|clathrin interactor 1
mm10_v2_chr16_-_22163299_22163299	0.0551643	GCUACAU	ENSMUST00000100052.4|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr13_+_119428888_119428960	0.0550339	GCUACAU	ENSMUST00000026520.7|Paip1|ENSMUSG00000025451.9|polyadenylate binding protein-interacting protein 1
mm10_v2_chr10_-_37138863_37138937	0.0519795	GCUACAU	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr3_-_108146080_108146150	0.051737	GCUACAU	ENSMUST00000000001.4|Gnai3|ENSMUSG00000000001.4|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm10_v2_chr8_-_31918203_31918368	0.0501235	GCUACAU	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr18_+_69345721_69345811	0.0496602	GCUACAU	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr9_-_103364970_103364996	0.0492815	GCUACAU	ENSMUST00000116517.2|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr5_+_150259922_150259936	0.048294	GCUACAU	ENSMUST00000087204.5|Fry|ENSMUSG00000056602.8|furry homolog (Drosophila)
mm10_v2_chr9_+_32696005_32696121	0.0466968	GCUACAU	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr4_-_9643638_9643717	0.046071	GCUACAU	ENSMUST00000108333.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108334.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108335.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000152526.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000103004.3|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
mm10_v2_chr11_-_74724670_74724702	0.0457104	GCUACAU	ENSMUST00000021091.8|Pafah1b1|ENSMUSG00000020745.9|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm10_v2_chr9_+_118040475_118040499	0.0456624	GCUACAU	ENSMUST00000044454.5|Azi2|ENSMUSG00000039285.6|5-azacytidine induced gene 2
mm10_v2_chr7_+_120677579_120677630	0.0442705	GCUACAU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr6_+_8209216_8209263	0.0442408	GCUACAU	ENSMUST00000040017.7|Mios|ENSMUSG00000042447.7|missing oocyte, meiosis regulator, homolog (Drosophila)
mm10_v2_chr5_-_20951769_20951824	0.0439961	GCUACAU	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr3_-_79567679_79567764	0.0433504	GCUACAU	ENSMUST00000076136.4|Fnip2|ENSMUSG00000061175.5|folliculin interacting protein 2
mm10_v2_chr11_+_77686155_77686179	0.0424607	GCUACAU	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr19_+_55742242_55742468	0.0421886	GCUACAU	ENSMUST00000111652.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111649.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111651.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111653.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111656.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000127233.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000153888.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr7_-_73541738_73541758	0.0401777	GCUACAU	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr7_+_128744870_128745020	0.0381282	GCUACAU	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr4_-_129189512_129189594	0.0365135	GCUACAU	ENSMUST00000117965.1|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000106061.2|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000072431.6|S100pbp|ENSMUSG00000040928.9|S100P binding protein
mm10_v2_chr17_+_24414640_24414691	0.0363386	GCUACAU	ENSMUST00000115371.1|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1 	ENSMUST00000088512.5|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1 	ENSMUST00000163717.1|Rnps1|ENSMUSG00000034681.10|ribonucleic acid binding protein S1
mm10_v2_chr10_-_82764088_82764144	0.0347263	GCUACAU	ENSMUST00000130911.1|Nfyb|ENSMUSG00000020248.12|nuclear transcription factor-Y beta
mm10_v2_chr10_-_85127977_85128035	0.0344674	GCUACAU	ENSMUST00000050813.2|Mterfd3|ENSMUSG00000049038.2|MTERF domain containing 3
mm10_v2_chr17_+_29549783_29549798	0.0341039	GCUACAU	ENSMUST00000048677.7|Tbc1d22b|ENSMUSG00000042203.7|TBC1 domain family, member 22B
mm10_v2_chr6_-_99266494_99266540	0.0334077	GCUACAU	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr14_+_27428790_27428874	0.0329496	GCUACAU	ENSMUST00000022450.4|D14Abb1e|ENSMUSG00000040651.8|DNA segment, Chr 14, Abbott 1 expressed
mm10_v2_chr10_-_117148474_117148510	0.032936	GCUACAU	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr19_+_59458372_59458450	0.0322184	GCUACAU	ENSMUST00000062216.3|Emx2|ENSMUSG00000043969.4|empty spiracles homeobox 2
mm10_v2_chr11_+_17159263_17159357	0.0316902	GCUACAU	ENSMUST00000102880.4|Ppp3r1|ENSMUSG00000033953.10|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm10_v2_chr10_-_11082287_11082372	0.0310628	GCUACAU	ENSMUST00000105561.2|Grm1|ENSMUSG00000019828.7|glutamate receptor, metabotropic 1 	ENSMUST00000044306.6|Grm1|ENSMUSG00000019828.7|glutamate receptor, metabotropic 1
mm10_v2_chr16_-_21694570_21694665	0.0305148	GCUACAU	ENSMUST00000053336.7|2510009E07Rik|ENSMUSG00000043391.9|RIKEN cDNA 2510009E07 gene
mm10_v2_chr16_+_58727910_58728059	0.0283675	GCUACAU	ENSMUST00000023426.5|Cldn25|ENSMUSG00000022744.6|claudin 25 	ENSMUST00000162057.1|Cldn25|ENSMUSG00000022744.6|claudin 25 	ENSMUST00000162191.1|Cldn25|ENSMUSG00000022744.6|claudin 25
mm10_v2_chr10_-_59951753_59951775	0.0271716	GCUACAU	ENSMUST00000020308.3|Ddit4|ENSMUSG00000020108.3|DNA-damage-inducible transcript 4
mm10_v2_chr6_-_39725448_39725478	0.0270458	GCUACAU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr2_+_154656959_154657108	0.026619	GCUACAU	ENSMUST00000044277.9|Chmp4b|ENSMUSG00000038467.9|charged multivesicular body protein 4B
mm10_v2_chr8_+_12395287_12395295	0.0262466	GCUACAU	ENSMUST00000180353.1|Sox1|ENSMUSG00000096014.1|SRY-box containing gene 1
mm10_v2_chr11_+_97050594_97050630	0.0255454	GCUACAU	ENSMUST00000090020.5|Osbpl7|ENSMUSG00000038534.11|oxysterol binding protein-like 7
mm10_v2_chr4_-_70534904_70534987	0.0253223	GCUACAU	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr15_+_102966794_102966812	0.0252548	GCUACAU	ENSMUST00000001699.7|Hoxc10|ENSMUSG00000022484.7|homeobox C10
mm10_v2_chr9_-_75409352_75409383	0.0242615	GCUACAU	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr6_-_142964404_142964452	0.0236479	GCUACAU	ENSMUST00000032421.3|St8sia1|ENSMUSG00000030283.5|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm10_v2_chr17_-_84187939_84187954	0.0235326	GCUACAU	ENSMUST00000060366.6|Zfp36l2|ENSMUSG00000045817.8|zinc finger protein 36, C3H type-like 2
mm10_v2_chr6_-_148896150_148896237	0.0234907	GCUACAU	ENSMUST00000072324.5|Caprin2|ENSMUSG00000030309.10|caprin family member 2 	ENSMUST00000111569.2|Caprin2|ENSMUSG00000030309.10|caprin family member 2
mm10_v2_chr2_+_128126030_128126056	0.0219682	GCUACAU	ENSMUST00000089634.5|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000019281.7|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000110341.2|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000103211.1|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000103210.1|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator)
mm10_v2_chr4_+_62965560_62965617	0.0212112	GCUACAU	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chr8_+_105636509_105636589	0.0210957	GCUACAU	ENSMUST00000005841.9|Ctcf|ENSMUSG00000005698.9|CCCTC-binding factor
mm10_v2_chr11_+_88068242_88068289	0.0210007	GCUACAU	ENSMUST00000018521.4|Vezf1|ENSMUSG00000018377.4|vascular endothelial zinc finger 1
mm10_v2_chr4_-_58912678_58912776	0.0207808	GCUACAU	ENSMUST00000144512.1|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000102889.3|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000055822.8|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180
mm10_v2_chr7_-_38019505_38019552	0.020714	GCUACAU	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr1_+_167689108_167689239	0.0195717	GCUACAU	ENSMUST00000111377.1|Lmx1a|ENSMUSG00000026686.8|LIM homeobox transcription factor 1 alpha
mm10_v2_chr2_-_34372004_34372044	0.0188121	GCUACAU	ENSMUST00000113132.2|Pbx3|ENSMUSG00000038718.9|pre B cell leukemia homeobox 3 	ENSMUST00000040638.8|Pbx3|ENSMUSG00000038718.9|pre B cell leukemia homeobox 3
mm10_v2_chr5_-_25498702_25498745	0.0187339	GCUACAU	ENSMUST00000173073.1|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C 	ENSMUST00000045291.7|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C
mm10_v2_chr1_+_133131143_133131283	0.0186257	GCUACAU	ENSMUST00000052529.3|Ppp1r15b|ENSMUSG00000046062.5|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm10_v2_chr5_-_121009510_121009521	0.0180561	GCUACAU	ENSMUST00000079204.5|Rph3a|ENSMUSG00000029608.7|rabphilin 3A
mm10_v2_chr14_-_21052420_21052450	0.0180365	GCUACAU	ENSMUST00000154460.1|Ap3m1|ENSMUSG00000021824.6|adaptor-related protein complex 3, mu 1 subunit
mm10_v2_chr8_-_25101985_25102194	0.0178171	GCUACAU	ENSMUST00000128715.1|Plekha2|ENSMUSG00000031557.9|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2 	ENSMUST00000064883.6|Plekha2|ENSMUSG00000031557.9|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm10_v2_chr3_-_146812951_146812983	0.0173289	GCUACAU	ENSMUST00000102515.3|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr10_-_128645965_128645991	0.0170934	GCUACAU	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr15_+_40655020_40655054	0.0170009	GCUACAU	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr2_-_63184253_63184292	0.0163672	GCUACAU	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr9_+_65032413_65032466	0.0157021	GCUACAU	ENSMUST00000034960.6|Dpp8|ENSMUSG00000032393.8|dipeptidylpeptidase 8
mm10_v2_chr8_-_80880479_80880499	0.0146738	GCUACAU	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chr4_+_114406717_114406733	0.0141201	GCUACAU	ENSMUST00000094894.3|Trabd2b|ENSMUSG00000070867.4|TraB domain containing 2B
mm10_v2_chr2_-_45113255_45113279	0.0138354	GCUACAU	ENSMUST00000068415.4|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000127520.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr11_-_104442232_104442291	0.0133452	GCUACAU	ENSMUST00000106977.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1 	ENSMUST00000106972.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1
mm10_v2_chr2_-_142901506_142901576	0.0130446	GCUACAU	ENSMUST00000043589.7|Kif16b|ENSMUSG00000038844.8|kinesin family member 16B
mm10_v2_chrX_+_71962971_71963013	0.0130012	GCUACAU	ENSMUST00000048790.6|Prrg3|ENSMUSG00000033361.7|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm10_v2_chr10_+_56377300_56377338	0.0128607	GCUACAU	ENSMUST00000068581.7|Gja1|ENSMUSG00000050953.9|gap junction protein, alpha 1
mm10_v2_chr7_-_83884289_83884341	0.0122545	GCUACAU	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr11_-_78697370_78697475	0.0121347	GCUACAU	ENSMUST00000142739.1|Nlk|ENSMUSG00000017376.9|nemo like kinase
mm10_v2_chr11_+_19924354_19924375	0.0114985	GCUACAU	ENSMUST00000093299.6|Spred2|ENSMUSG00000045671.11|sprouty-related, EVH1 domain containing 2
mm10_v2_chr13_-_8871696_8871749	0.0109885	GCUACAU	ENSMUST00000054251.6|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37 	ENSMUST00000176813.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr3_+_159839729_159839745	0.0109543	GCUACAU	ENSMUST00000068952.5|Wls|ENSMUSG00000028173.6|wntless homolog (Drosophila)
mm10_v2_chr13_+_45389734_45389750	0.00787691	GCUACAU	ENSMUST00000038275.9|Mylip|ENSMUSG00000038175.9|myosin regulatory light chain interacting protein
mm10_v2_chr19_-_53390559_53390581	0.00768412	GCUACAU	ENSMUST00000025997.5|Smndc1|ENSMUSG00000025024.6|survival motor neuron domain containing 1
mm10_v2_chr3_+_108591279_108591414	0.00674428	GCUACAU	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr6_+_92091378_92091390	0.00661289	GCUACAU	ENSMUST00000113460.1|Nr2c2|ENSMUSG00000005893.8|nuclear receptor subfamily 2, group C, member 2
mm10_v2_chr7_-_81493883_81493947	0.0061778	GCUACAU	ENSMUST00000082090.7|Ap3b2|ENSMUSG00000062444.8|adaptor-related protein complex 3, beta 2 subunit
mm10_v2_chr11_-_46166397_46166508	0.00610655	GCUACAU	ENSMUST00000020679.2|Nipal4|ENSMUSG00000020411.2|NIPA-like domain containing 4
mm10_v2_chr18_-_63387124_63387189	0.00406903	GCUACAU	ENSMUST00000047480.6|Piezo2|ENSMUSG00000041482.10|piezo-type mechanosensitive ion channel component 2 	ENSMUST00000046860.5|Piezo2|ENSMUSG00000041482.10|piezo-type mechanosensitive ion channel component 2
mm10_v2_chr13_-_54766553_54766595	0.003579	GCUACAU	ENSMUST00000036825.7|Sncb|ENSMUSG00000034891.7|synuclein, beta
mm10_v2_chr5_-_138155694_138155744	0.0035185	GCUACAU	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr16_+_13986596_13986674	0.0033529	GCUACAU	ENSMUST00000056521.5|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000118412.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000131608.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene
mm10_v2_chr9_+_61372359_61372383	0.00256712	GCUACAU	ENSMUST00000178113.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159386.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr10_+_80148263_80148279	0.00250976	GCUACAU	ENSMUST00000099492.3|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000042057.5|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr11_+_20201406_20201448	0.00128819	GCUACAU	ENSMUST00000020358.5|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109602.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109601.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family
mm10_v2_chr11_+_77982710_77982823	0.00125131	GCUACAU	ENSMUST00000108360.1|Phf12|ENSMUSG00000037791.9|PHD finger protein 12 	ENSMUST00000049167.7|Phf12|ENSMUSG00000037791.9|PHD finger protein 12
mm10_v2_chr11_+_72607221_72607307	8.1559e-05	GCUACAU	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr5_-_51553896_51553921	2.99266e-05	GCUACAU	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
