mm10_v2_chr10_+_82985473_82985504	2.03725	GCAGCAU	ENSMUST00000040110.7|Chst11|ENSMUSG00000034612.7|carbohydrate sulfotransferase 11
mm10_v2_chr4_+_13743424_13743478	1.51742	GCAGCAU	ENSMUST00000006761.3|Runx1t1|ENSMUSG00000006586.9|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm10_v2_chr10_-_45470201_45470260	1.35441	GCAGCAU	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chrX_-_142966709_142966734	1.33325	GCAGCAU	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr14_-_70766598_70766644	1.33221	GCAGCAU	ENSMUST00000167242.1|Xpo7|ENSMUSG00000022100.7|exportin 7 	ENSMUST00000022696.6|Xpo7|ENSMUSG00000022100.7|exportin 7
mm10_v2_chr19_-_45816007_45816076	1.25923	GCAGCAU	ENSMUST00000079431.3|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2 	ENSMUST00000026247.6|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2 	ENSMUST00000162528.2|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2
mm10_v2_chr2_+_5951440_5951469	1.2331	GCAGCAU	ENSMUST00000060092.6|Upf2|ENSMUSG00000043241.8|UPF2 regulator of nonsense transcripts homolog (yeast)
mm10_v2_chr6_-_39206782_39206831	1.22252	GCAGCAU	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr9_-_61946768_61946799	1.1509	GCAGCAU	ENSMUST00000034815.7|Kif23|ENSMUSG00000032254.9|kinesin family member 23
mm10_v2_chrX_+_159532674_159532748	1.13051	GCAGCAU	ENSMUST00000057180.6|A830080D01Rik|ENSMUSG00000044150.6|RIKEN cDNA A830080D01 gene
mm10_v2_chr11_-_87359011_87359081	1.12107	GCAGCAU	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr3_+_129532386_129532440	1.08694	GCAGCAU	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr1_+_171767123_171767138	1.08368	GCAGCAU	ENSMUST00000015460.4|Slamf1|ENSMUSG00000015316.10|signaling lymphocytic activation molecule family member 1
mm10_v2_chr3_+_51415986_51416044	0.908844	GCAGCAU	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chrX_-_51205773_51205839	0.863788	GCAGCAU	ENSMUST00000114875.1|Mbnl3|ENSMUSG00000036109.11|muscleblind-like 3 (Drosophila)
mm10_v2_chr4_-_44167580_44167608	0.855328	GCAGCAU	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr13_-_114932035_114932066	0.853219	GCAGCAU	ENSMUST00000056117.8|Itga2|ENSMUSG00000015533.8|integrin alpha 2
mm10_v2_chr2_-_168767029_168767104	0.823223	GCAGCAU	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr5_+_33995984_33996030	0.73494	GCAGCAU	ENSMUST00000056355.8|Nat8l|ENSMUSG00000048142.8|N-acetyltransferase 8-like
mm10_v2_chr11_+_98907801_98907824	0.731552	GCAGCAU	ENSMUST00000092706.6|Cdc6|ENSMUSG00000017499.9|cell division cycle 6
mm10_v2_chr11_+_79993062_79993122	0.730076	GCAGCAU	ENSMUST00000017692.8|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila) 	ENSMUST00000163272.1|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila)
mm10_v2_chr2_-_70825726_70825820	0.723821	GCAGCAU	ENSMUST00000038584.8|Tlk1|ENSMUSG00000041997.10|tousled-like kinase 1
mm10_v2_chr13_-_51567084_51567084	0.723692	GCAGCAU	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr15_-_73184840_73184971	0.709353	GCAGCAU	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr4_-_3938354_3938401	0.674399	GCAGCAU	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr6_+_4747306_4747372	0.672601	GCAGCAU	ENSMUST00000175823.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10 	ENSMUST00000176204.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10 	ENSMUST00000166678.1|Peg10|ENSMUSG00000092035.2|paternally expressed 10
mm10_v2_chrX_+_112604274_112604274	0.651401	GCAGCAU	ENSMUST00000071814.6|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr18_+_23954668_23954704	0.622846	GCAGCAU	ENSMUST00000060762.4|Zfp397|ENSMUSG00000024276.6|zinc finger protein 397
mm10_v2_chr18_-_10030017_10030146	0.607057	GCAGCAU	ENSMUST00000116669.1|Usp14|ENSMUSG00000047879.10|ubiquitin specific peptidase 14 	ENSMUST00000092096.6|Usp14|ENSMUSG00000047879.10|ubiquitin specific peptidase 14
mm10_v2_chr6_-_57825144_57825166	0.592412	GCAGCAU	ENSMUST00000114297.2|Vopp1|ENSMUSG00000037788.8|vesicular, overexpressed in cancer, prosurvival protein 1
mm10_v2_chr19_-_37207293_37207508	0.585291	GCAGCAU	ENSMUST00000132580.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000079754.4|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000136286.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126188.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126781.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3
mm10_v2_chr2_-_163645125_163645136	0.581368	GCAGCAU	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr18_+_68300351_68300422	0.579945	GCAGCAU	ENSMUST00000009679.4|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000131075.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000025427.7|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000139111.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase
mm10_v2_chr19_-_31765027_31765079	0.579078	GCAGCAU	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr4_-_45084538_45084604	0.570861	GCAGCAU	ENSMUST00000052236.6|Fbxo10|ENSMUSG00000048232.6|F-box protein 10
mm10_v2_chr8_-_122551316_122551333	0.567014	GCAGCAU	ENSMUST00000067252.7|Piezo1|ENSMUSG00000014444.10|piezo-type mechanosensitive ion channel component 1
mm10_v2_chr3_+_60501252_60501275	0.559093	GCAGCAU	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr2_-_132578155_132578233	0.554281	GCAGCAU	ENSMUST00000110136.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000124107.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000060955.5|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr8_+_79639618_79639730	0.551951	GCAGCAU	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr2_+_112379204_112379253	0.55029	GCAGCAU	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr13_+_118714678_118714701	0.543323	GCAGCAU	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr19_-_14597983_14598016	0.530014	GCAGCAU	ENSMUST00000052011.7|Tle4|ENSMUSG00000024642.10|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm10_v2_chr15_+_80711292_80711340	0.526142	GCAGCAU	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr16_-_76373827_76373852	0.522176	GCAGCAU	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr13_+_109903089_109903110	0.519169	GCAGCAU	ENSMUST00000120664.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr7_-_127021205_127021216	0.516954	GCAGCAU	ENSMUST00000159916.1|Prrt2|ENSMUSG00000045114.7|proline-rich transmembrane protein 2
mm10_v2_chr1_-_134079114_134079120	0.495007	GCAGCAU	ENSMUST00000020692.6|Btg2|ENSMUSG00000020423.6|B cell translocation gene 2, anti-proliferative
mm10_v2_chr16_+_17233560_17233664	0.494678	GCAGCAU	ENSMUST00000090190.5|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2 	ENSMUST00000115698.2|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2
mm10_v2_chr17_+_27556613_27556635	0.489392	GCAGCAU	ENSMUST00000117600.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000114888.3|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr2_-_125859139_125859221	0.48805	GCAGCAU	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr13_-_103764502_103764505	0.476492	GCAGCAU	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr12_+_53248677_53248677	0.472225	GCAGCAU	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr2_-_37647199_37647285	0.470266	GCAGCAU	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr2_+_69722797_69722840	0.469528	GCAGCAU	ENSMUST00000090858.3|Ppig|ENSMUSG00000042133.10|peptidyl-prolyl isomerase G (cyclophilin G)
mm10_v2_chr3_+_145987835_145987901	0.466073	GCAGCAU	ENSMUST00000039517.6|Syde2|ENSMUSG00000036863.7|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm10_v2_chr14_-_110755100_110755152	0.465086	GCAGCAU	ENSMUST00000078386.2|Slitrk6|ENSMUSG00000045871.4|SLIT and NTRK-like family, member 6
mm10_v2_chr10_+_67979569_67979575	0.461965	GCAGCAU	ENSMUST00000118160.1|Rtkn2|ENSMUSG00000037846.12|rhotekin 2
mm10_v2_chrX_-_157492280_157492340	0.460434	GCAGCAU	ENSMUST00000112529.1|Sms|ENSMUSG00000071708.5|spermine synthase
mm10_v2_chr1_+_160906372_160906460	0.456512	GCAGCAU	ENSMUST00000161609.1|Rc3h1|ENSMUSG00000040423.4|RING CCCH (C3H) domains 1
mm10_v2_chr9_-_99140065_99140087	0.455521	GCAGCAU	ENSMUST00000035037.7|Pik3cb|ENSMUSG00000032462.8|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm10_v2_chr8_-_57653023_57653039	0.448333	GCAGCAU	ENSMUST00000034021.5|Galnt7|ENSMUSG00000031608.7|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm10_v2_chr8_+_79028587_79028654	0.445904	GCAGCAU	ENSMUST00000119254.1|Zfp827|ENSMUSG00000071064.7|zinc finger protein 827
mm10_v2_chr9_+_64385675_64385698	0.438668	GCAGCAU	ENSMUST00000068967.4|Megf11|ENSMUSG00000036466.11|multiple EGF-like-domains 11
mm10_v2_chr6_+_56714891_56714951	0.435138	GCAGCAU	ENSMUST00000031805.8|Avl9|ENSMUSG00000029787.8|AVL9 homolog (S. cerevisiase)
mm10_v2_chr16_+_58408443_58408523	0.434179	GCAGCAU	ENSMUST00000046663.7|Dcbld2|ENSMUSG00000035107.7|discoidin, CUB and LCCL domain containing 2
mm10_v2_chr19_+_18670780_18670810	0.419206	GCAGCAU	ENSMUST00000025632.9|2410127L17Rik|ENSMUSG00000024726.9|RIKEN cDNA 2410127L17 gene
mm10_v2_chr1_+_191325912_191325984	0.413981	GCAGCAU	ENSMUST00000027940.5|Tmem206|ENSMUSG00000026627.7|transmembrane protein 206
mm10_v2_chr2_-_114201416_114201469	0.410985	GCAGCAU	ENSMUST00000050668.3|Zfp770|ENSMUSG00000040321.3|zinc finger protein 770
mm10_v2_chr7_-_38107490_38107534	0.410691	GCAGCAU	ENSMUST00000108023.3|Ccne1|ENSMUSG00000002068.10|cyclin E1
mm10_v2_chr1_-_195092242_195092253	0.408351	GCAGCAU	ENSMUST00000162650.1|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein 	ENSMUST00000160817.1|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein 	ENSMUST00000162614.1|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein 	ENSMUST00000016637.6|Cd46|ENSMUSG00000016493.7|CD46 antigen, complement regulatory protein
mm10_v2_chr16_-_30388530_30388530	0.405154	GCAGCAU	ENSMUST00000100013.2|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3 	ENSMUST00000061350.6|Atp13a3|ENSMUSG00000022533.7|ATPase type 13A3
mm10_v2_chr1_-_63114516_63114667	0.4046	GCAGCAU	ENSMUST00000097718.2|Ino80d|ENSMUSG00000040865.9|INO80 complex subunit D
mm10_v2_chr2_+_76406529_76406580	0.40311	GCAGCAU	ENSMUST00000111929.1|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000077972.4|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000111930.2|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6
mm10_v2_chr11_-_88718223_88718294	0.398999	GCAGCAU	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr12_-_118301429_118301458	0.396636	GCAGCAU	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr12_+_59066908_59066931	0.386356	GCAGCAU	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr2_+_119897212_119897305	0.386238	GCAGCAU	ENSMUST00000046717.6|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110774.1|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110773.2|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000079934.5|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000156510.1|Mga|ENSMUSG00000033943.9|MAX gene associated
mm10_v2_chr16_+_35983307_35983395	0.383654	GCAGCAU	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr13_-_89742490_89742515	0.378537	GCAGCAU	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr11_+_80477015_80477085	0.376175	GCAGCAU	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr6_+_143167210_143167267	0.371982	GCAGCAU	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr11_-_59290746_59290758	0.369315	GCAGCAU	ENSMUST00000010044.7|Wnt3a|ENSMUSG00000009900.7|wingless-related MMTV integration site 3A
mm10_v2_chr5_+_30711564_30711586	0.369053	GCAGCAU	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr4_-_55532453_55532485	0.365703	GCAGCAU	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr1_+_15712303_15712303	0.365666	GCAGCAU	ENSMUST00000170146.1|Kcnb2|ENSMUSG00000090498.1|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr14_-_26971232_26971232	0.362745	GCAGCAU	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr17_+_3114957_3114982	0.360145	GCAGCAU	ENSMUST00000076734.6|Scaf8|ENSMUSG00000046201.8|SR-related CTD-associated factor 8
mm10_v2_chr7_+_56050135_56050217	0.358232	GCAGCAU	ENSMUST00000076226.6|Herc2|ENSMUSG00000030451.9|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm10_v2_chr16_+_32332238_32332266	0.357995	GCAGCAU	ENSMUST00000115151.3|Ubxn7|ENSMUSG00000053774.8|UBX domain protein 7
mm10_v2_chr3_-_122619663_122619680	0.354947	GCAGCAU	ENSMUST00000162409.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr18_+_10725530_10725564	0.353989	GCAGCAU	ENSMUST00000052838.4|Mib1|ENSMUSG00000024294.7|mindbomb homolog 1 (Drosophila)
mm10_v2_chr9_+_121719172_121719278	0.352054	GCAGCAU	ENSMUST00000035112.6|Nktr|ENSMUSG00000032525.8|natural killer tumor recognition sequence 	ENSMUST00000182311.1|Nktr|ENSMUSG00000032525.8|natural killer tumor recognition sequence
mm10_v2_chr3_+_103914560_103914605	0.349327	GCAGCAU	ENSMUST00000106806.1|Rsbn1|ENSMUSG00000044098.8|rosbin, round spermatid basic protein 1
mm10_v2_chr2_-_153529941_153529985	0.34749	GCAGCAU	ENSMUST00000035346.7|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chr3_+_101377074_101377158	0.345764	GCAGCAU	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chr1_+_85793411_85793541	0.34441	GCAGCAU	ENSMUST00000113360.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39 	ENSMUST00000126962.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39
mm10_v2_chr7_-_122021143_122021222	0.342234	GCAGCAU	ENSMUST00000033160.8|Gga2|ENSMUSG00000030872.8|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm10_v2_chr5_+_146231211_146231385	0.34058	GCAGCAU	ENSMUST00000161181.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000161652.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000031640.8|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000159467.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8
mm10_v2_chr10_-_53379816_53379858	0.338518	GCAGCAU	ENSMUST00000095691.5|Cep85l|ENSMUSG00000038594.8|centrosomal protein 85-like
mm10_v2_chr13_+_46418266_46418316	0.337614	GCAGCAU	ENSMUST00000037923.3|Rbm24|ENSMUSG00000038132.5|RNA binding motif protein 24
mm10_v2_chr12_+_71015966_71016063	0.335157	GCAGCAU	ENSMUST00000046305.5|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr8_-_104443001_104443047	0.333594	GCAGCAU	ENSMUST00000041769.6|Dync1li2|ENSMUSG00000035770.7|dynein, cytoplasmic 1 light intermediate chain 2
mm10_v2_chr14_+_14012491_14012693	0.332263	GCAGCAU	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chr3_+_138742195_138742322	0.322622	GCAGCAU	ENSMUST00000029800.2|Tspan5|ENSMUSG00000028152.4|tetraspanin 5
mm10_v2_chr7_+_45434833_45434871	0.317349	GCAGCAU	ENSMUST00000003964.8|Gys1|ENSMUSG00000003865.8|glycogen synthase 1, muscle
mm10_v2_chr12_+_111538101_111538243	0.31669	GCAGCAU	ENSMUST00000166123.1|Eif5|ENSMUSG00000021282.10|eukaryotic translation initiation factor 5
mm10_v2_chr16_+_8830093_8830104	0.316366	GCAGCAU	ENSMUST00000023150.5|1810013L24Rik|ENSMUSG00000022507.5|RIKEN cDNA 1810013L24 gene
mm10_v2_chr14_-_61439831_61439947	0.308937	GCAGCAU	ENSMUST00000022496.7|Kpna3|ENSMUSG00000021929.8|karyopherin (importin) alpha 3
mm10_v2_chr16_-_16146771_16146851	0.308702	GCAGCAU	ENSMUST00000040248.7|Spidr|ENSMUSG00000041974.9|scaffolding protein involved i DNA repair
mm10_v2_chr11_-_104550460_104550560	0.306312	GCAGCAU	ENSMUST00000106961.1|Cdc27|ENSMUSG00000020687.7|cell division cycle 27 	ENSMUST00000093923.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr10_+_86021961_86021991	0.306274	GCAGCAU	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr3_-_9004686_9004750	0.301041	GCAGCAU	ENSMUST00000120143.1|Tpd52|ENSMUSG00000027506.9|tumor protein D52
mm10_v2_chr17_+_46161021_46161072	0.300295	GCAGCAU	ENSMUST00000024748.7|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2 	ENSMUST00000172170.1|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2
mm10_v2_chr6_-_39725448_39725478	0.299835	GCAGCAU	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr3_-_119783262_119783388	0.291538	GCAGCAU	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr9_+_72532214_72532271	0.289706	GCAGCAU	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr3_-_75556759_75556871	0.289157	GCAGCAU	ENSMUST00000162138.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000029424.5|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000161137.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10
mm10_v2_chr11_-_113684155_113684186	0.286672	GCAGCAU	ENSMUST00000120194.1|Fam104a|ENSMUSG00000041629.7|family with sequence similarity 104, member A
mm10_v2_chr7_+_59228743_59228769	0.285396	GCAGCAU	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr1_+_59912972_59913027	0.284093	GCAGCAU	ENSMUST00000036540.5|Fam117b|ENSMUSG00000041040.6|family with sequence similarity 117, member B
mm10_v2_chr17_+_43016536_43016591	0.283858	GCAGCAU	ENSMUST00000024708.4|Tnfrsf21|ENSMUSG00000023915.4|tumor necrosis factor receptor superfamily, member 21
mm10_v2_chr16_+_45224315_45224346	0.281141	GCAGCAU	ENSMUST00000102802.3|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated 	ENSMUST00000063654.4|Btla|ENSMUSG00000052013.8|B and T lymphocyte associated
mm10_v2_chr14_+_56887795_56887795	0.277686	GCAGCAU	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr7_+_75455534_75455629	0.277487	GCAGCAU	ENSMUST00000147005.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13 	ENSMUST00000166315.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr13_-_65112963_65112987	0.276265	GCAGCAU	ENSMUST00000155487.1|Hiatl1|ENSMUSG00000038212.9|hippocampus abundant transcript-like 1 	ENSMUST00000054730.8|Hiatl1|ENSMUSG00000038212.9|hippocampus abundant transcript-like 1
mm10_v2_chr5_-_32854185_32854256	0.275332	GCAGCAU	ENSMUST00000130134.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like 	ENSMUST00000120129.2|Prr14l|ENSMUSG00000054280.8|proline rich 14-like
mm10_v2_chr7_+_16130285_16130333	0.27418	GCAGCAU	ENSMUST00000168693.1|Slc8a2|ENSMUSG00000030376.7|solute carrier family 8 (sodium/calcium exchanger), member 2
mm10_v2_chrX_+_75514299_75514316	0.27309	GCAGCAU	ENSMUST00000114070.3|Vbp1|ENSMUSG00000031197.5|von Hippel-Lindau binding protein 1 	ENSMUST00000033540.5|Vbp1|ENSMUSG00000031197.5|von Hippel-Lindau binding protein 1
mm10_v2_chr5_+_150952607_150952714	0.270541	GCAGCAU	ENSMUST00000078856.6|Kl|ENSMUSG00000058488.6|klotho
mm10_v2_chr1_+_150100093_150100124	0.26814	GCAGCAU	ENSMUST00000035065.7|Ptgs2|ENSMUSG00000032487.7|prostaglandin-endoperoxide synthase 2
mm10_v2_chr4_+_21848039_21848077	0.267976	GCAGCAU	ENSMUST00000098238.2|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18 	ENSMUST00000108229.1|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18
mm10_v2_chr5_+_146384947_146384994	0.266637	GCAGCAU	ENSMUST00000110600.1|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3 	ENSMUST00000016143.7|Wasf3|ENSMUSG00000029636.7|WAS protein family, member 3
mm10_v2_chr11_-_20112876_20112925	0.262934	GCAGCAU	ENSMUST00000000137.7|Actr2|ENSMUSG00000020152.7|ARP2 actin-related protein 2
mm10_v2_chr7_-_73541738_73541758	0.26293	GCAGCAU	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr11_+_29172890_29172925	0.260009	GCAGCAU	ENSMUST00000102856.2|Smek2|ENSMUSG00000020463.9|SMEK homolog 2, suppressor of mek1 (Dictyostelium) 	ENSMUST00000020755.5|Smek2|ENSMUSG00000020463.9|SMEK homolog 2, suppressor of mek1 (Dictyostelium)
mm10_v2_chr14_+_30479565_30479685	0.257564	GCAGCAU	ENSMUST00000022535.7|Dcp1a|ENSMUSG00000021962.8|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm10_v2_chr5_+_77265454_77265549	0.256648	GCAGCAU	ENSMUST00000080359.5|Rest|ENSMUSG00000029249.9|RE1-silencing transcription factor
mm10_v2_chr2_+_130012336_130012350	0.256519	GCAGCAU	ENSMUST00000110299.2|Tgm3|ENSMUSG00000027401.9|transglutaminase 3, E polypeptide
mm10_v2_chr6_-_51469869_51469894	0.254909	GCAGCAU	ENSMUST00000114459.1|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1 	ENSMUST00000069949.6|Hnrnpa2b1|ENSMUSG00000004980.10|heterogeneous nuclear ribonucleoprotein A2/B1
mm10_v2_chr4_+_6365650_6365720	0.253745	GCAGCAU	ENSMUST00000029912.4|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000103008.5|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000175769.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000108374.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000140830.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein
mm10_v2_chr10_+_42502197_42502290	0.246976	GCAGCAU	ENSMUST00000105499.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr8_+_121730563_121730589	0.245695	GCAGCAU	ENSMUST00000026357.5|Jph3|ENSMUSG00000025318.7|junctophilin 3
mm10_v2_chr12_+_52516077_52516077	0.245453	GCAGCAU	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr5_-_124425907_124425946	0.242748	GCAGCAU	ENSMUST00000065263.5|Sbno1|ENSMUSG00000038095.9|sno, strawberry notch homolog 1 (Drosophila)
mm10_v2_chr2_+_156840077_156840141	0.241862	GCAGCAU	ENSMUST00000081335.6|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2 	ENSMUST00000073352.3|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr1_+_55131231_55131249	0.237975	GCAGCAU	ENSMUST00000162364.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein 	ENSMUST00000159311.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr12_-_3309912_3309975	0.236232	GCAGCAU	ENSMUST00000021001.8|Rab10|ENSMUSG00000020671.8|RAB10, member RAS oncogene family
mm10_v2_chr3_+_107101551_107101567	0.236201	GCAGCAU	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr19_+_43689672_43689695	0.233827	GCAGCAU	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr10_+_7681197_7681225	0.233714	GCAGCAU	ENSMUST00000165952.1|Lats1|ENSMUSG00000040021.6|large tumor suppressor
mm10_v2_chr19_-_59943647_59943678	0.232658	GCAGCAU	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr2_+_153741274_153741294	0.228266	GCAGCAU	ENSMUST00000028981.8|Mapre1|ENSMUSG00000027479.8|microtubule-associated protein, RP/EB family, member 1
mm10_v2_chr11_-_115603866_115604051	0.22799	GCAGCAU	ENSMUST00000125097.1|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3 	ENSMUST00000106508.3|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3 	ENSMUST00000019135.7|Gga3|ENSMUSG00000020740.7|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm10_v2_chr12_-_55302974_55303014	0.227293	GCAGCAU	ENSMUST00000021410.8|Ppp2r3c|ENSMUSG00000021022.8|protein phosphatase 2, regulatory subunit B'', gamma
mm10_v2_chr5_-_36695969_36696041	0.226993	GCAGCAU	ENSMUST00000031091.9|D5Ertd579e|ENSMUSG00000029190.13|DNA segment, Chr 5, ERATO Doi 579, expressed 	ENSMUST00000140063.1|D5Ertd579e|ENSMUSG00000029190.13|DNA segment, Chr 5, ERATO Doi 579, expressed
mm10_v2_chr5_+_117841839_117841857	0.221515	GCAGCAU	ENSMUST00000142742.2|Nos1|ENSMUSG00000029361.12|nitric oxide synthase 1, neuronal
mm10_v2_chr4_+_34550937_34550937	0.220555	GCAGCAU	ENSMUST00000084299.5|Akirin2|ENSMUSG00000028291.7|akirin 2
mm10_v2_chr10_-_22731336_22731447	0.219337	GCAGCAU	ENSMUST00000127698.1|Tbpl1|ENSMUSG00000071359.7|TATA box binding protein-like 1
mm10_v2_chr10_+_83543941_83544007	0.219325	GCAGCAU	ENSMUST00000038388.5|A230046K03Rik|ENSMUSG00000034560.5|RIKEN cDNA A230046K03 gene
mm10_v2_chr10_+_59221945_59221960	0.21446	GCAGCAU	ENSMUST00000182161.1|Sowahc|ENSMUSG00000098188.1|sosondowah ankyrin repeat domain family member C
mm10_v2_chrX_-_41911877_41911912	0.210274	GCAGCAU	ENSMUST00000047037.8|Thoc2|ENSMUSG00000037475.9|THO complex 2
mm10_v2_chr9_+_107935876_107935938	0.209858	GCAGCAU	ENSMUST00000035700.8|Camkv|ENSMUSG00000032936.8|CaM kinase-like vesicle-associated
mm10_v2_chr15_+_76351303_76351337	0.206886	GCAGCAU	ENSMUST00000023212.8|Maf1|ENSMUSG00000022553.9|MAF1 homolog (S. cerevisiae) 	ENSMUST00000160172.1|Maf1|ENSMUSG00000022553.9|MAF1 homolog (S. cerevisiae)
mm10_v2_chr14_-_122465677_122465677	0.203703	GCAGCAU	ENSMUST00000039118.6|Zic5|ENSMUSG00000041703.7|zinc finger protein of the cerebellum 5
mm10_v2_chr19_+_5490475_5490487	0.203451	GCAGCAU	ENSMUST00000116560.2|Cfl1|ENSMUSG00000056201.6|cofilin 1, non-muscle
mm10_v2_chr2_-_6884975_6884996	0.20289	GCAGCAU	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr6_-_120038647_120038699	0.202477	GCAGCAU	ENSMUST00000088646.5|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000177761.1|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000088644.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000060043.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1
mm10_v2_chr10_-_127263346_127263368	0.201148	GCAGCAU	ENSMUST00000099172.3|Kif5a|ENSMUSG00000074657.4|kinesin family member 5A
mm10_v2_chr2_+_5845017_5845062	0.198837	GCAGCAU	ENSMUST00000026927.3|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5 	ENSMUST00000179748.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr1_+_70725715_70725830	0.198112	GCAGCAU	ENSMUST00000053922.5|Vwc2l|ENSMUSG00000045648.9|von Willebrand factor C domain-containing protein 2-like
mm10_v2_chr6_+_92091378_92091390	0.196951	GCAGCAU	ENSMUST00000113460.1|Nr2c2|ENSMUSG00000005893.8|nuclear receptor subfamily 2, group C, member 2
mm10_v2_chr3_+_146852359_146852438	0.196427	GCAGCAU	ENSMUST00000038090.5|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7 	ENSMUST00000170055.1|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7
mm10_v2_chr2_+_162931520_162931536	0.194946	GCAGCAU	ENSMUST00000130411.1|Srsf6|ENSMUSG00000016921.8|serine/arginine-rich splicing factor 6
mm10_v2_chr13_-_96132568_96132628	0.194131	GCAGCAU	ENSMUST00000161263.1|Sv2c|ENSMUSG00000051111.9|synaptic vesicle glycoprotein 2c
mm10_v2_chr5_+_16553488_16553550	0.18684	GCAGCAU	ENSMUST00000030683.3|Hgf|ENSMUSG00000028864.3|hepatocyte growth factor
mm10_v2_chr4_+_137277489_137277518	0.186754	GCAGCAU	ENSMUST00000045747.4|Wnt4|ENSMUSG00000036856.4|wingless-related MMTV integration site 4
mm10_v2_chr11_-_102556122_102556199	0.184179	GCAGCAU	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr3_+_28263205_28263215	0.184036	GCAGCAU	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chrX_-_7188713_7188743	0.179811	GCAGCAU	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr12_-_12941827_12941914	0.173563	GCAGCAU	ENSMUST00000043396.7|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr17_-_24479034_24479083	0.173544	GCAGCAU	ENSMUST00000179163.1|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae) 	ENSMUST00000070888.6|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm10_v2_chrX_-_136868537_136868755	0.163064	GCAGCAU	ENSMUST00000058814.6|Rab9b|ENSMUSG00000043463.6|RAB9B, member RAS oncogene family
mm10_v2_chr1_-_170215380_170215420	0.162536	GCAGCAU	ENSMUST00000027979.7|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1 	ENSMUST00000123399.1|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1
mm10_v2_chr12_-_100725028_100725081	0.161753	GCAGCAU	ENSMUST00000043599.6|Rps6ka5|ENSMUSG00000021180.8|ribosomal protein S6 kinase, polypeptide 5
mm10_v2_chr5_+_138085083_138085147	0.158542	GCAGCAU	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr10_+_128092771_128092819	0.156816	GCAGCAU	ENSMUST00000170054.2|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A 	ENSMUST00000045621.8|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A
mm10_v2_chrX_-_36989656_36989674	0.155344	GCAGCAU	ENSMUST00000060474.7|Sept6|ENSMUSG00000050379.9|septin 6 	ENSMUST00000053456.4|Sept6|ENSMUSG00000050379.9|septin 6 	ENSMUST00000115239.3|Sept6|ENSMUSG00000050379.9|septin 6
mm10_v2_chr11_+_70017085_70017146	0.153372	GCAGCAU	ENSMUST00000108589.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr7_+_27862557_27862557	0.150822	GCAGCAU	ENSMUST00000053722.8|Zfp607|ENSMUSG00000020420.7|zinc finger proten 607
mm10_v2_chr6_-_118197732_118197744	0.150613	GCAGCAU	ENSMUST00000032201.5|Ret|ENSMUSG00000030110.7|ret proto-oncogene 	ENSMUST00000088790.3|Ret|ENSMUSG00000030110.7|ret proto-oncogene
mm10_v2_chr2_+_49619277_49619343	0.149058	GCAGCAU	ENSMUST00000028102.7|Kif5c|ENSMUSG00000026764.9|kinesin family member 5C
mm10_v2_chr6_+_125145235_125145251	0.147307	GCAGCAU	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr14_+_45351473_45351473	0.145811	GCAGCAU	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr16_-_64786321_64786321	0.143892	GCAGCAU	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr9_+_65032413_65032466	0.141583	GCAGCAU	ENSMUST00000034960.6|Dpp8|ENSMUSG00000032393.8|dipeptidylpeptidase 8
mm10_v2_chr5_-_96161990_96162097	0.140436	GCAGCAU	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr1_+_172499948_172500047	0.140328	GCAGCAU	ENSMUST00000111230.1|Tagln2|ENSMUSG00000026547.9|transgelin 2
mm10_v2_chr13_-_101768154_101768217	0.138412	GCAGCAU	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr13_+_49682100_49682169	0.136783	GCAGCAU	ENSMUST00000165316.1|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase 	ENSMUST00000047363.7|Iars|ENSMUSG00000037851.7|isoleucine-tRNA synthetase
mm10_v2_chrX_-_51018011_51018032	0.136396	GCAGCAU	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr19_+_45363734_45363831	0.133289	GCAGCAU	ENSMUST00000065601.5|Btrc|ENSMUSG00000025217.8|beta-transducin repeat containing protein 	ENSMUST00000111936.2|Btrc|ENSMUSG00000025217.8|beta-transducin repeat containing protein
mm10_v2_chr10_+_93160824_93160894	0.133235	GCAGCAU	ENSMUST00000069965.7|Cdk17|ENSMUSG00000020015.9|cyclin-dependent kinase 17
mm10_v2_chr4_-_129742275_129742312	0.133158	GCAGCAU	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr10_-_122047293_122047322	0.130761	GCAGCAU	ENSMUST00000020322.5|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1 	ENSMUST00000081688.6|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1
mm10_v2_chr1_-_131245167_131245258	0.130361	GCAGCAU	ENSMUST00000027688.8|Rassf5|ENSMUSG00000026430.9|Ras association (RalGDS/AF-6) domain family member 5 	ENSMUST00000112442.1|Rassf5|ENSMUSG00000026430.9|Ras association (RalGDS/AF-6) domain family member 5
mm10_v2_chr14_-_34374617_34374789	0.129512	GCAGCAU	ENSMUST00000023826.4|Sncg|ENSMUSG00000023064.4|synuclein, gamma
mm10_v2_chr2_-_110950923_110950923	0.128653	GCAGCAU	ENSMUST00000099623.3|Ano3|ENSMUSG00000074968.5|anoctamin 3
mm10_v2_chr9_+_37489281_37489326	0.122009	GCAGCAU	ENSMUST00000048604.6|Msantd2|ENSMUSG00000042138.6|Myb/SANT-like DNA-binding domain containing 2
mm10_v2_chr11_-_75348261_75348324	0.118289	GCAGCAU	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr6_-_120493807_120493913	0.118086	GCAGCAU	ENSMUST00000178687.1|Cecr6|ENSMUSG00000094626.1|cat eye syndrome chromosome region, candidate 6
mm10_v2_chr3_+_152210458_152210534	0.115047	GCAGCAU	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr15_+_89253035_89253035	0.114158	GCAGCAU	ENSMUST00000088788.3|Ppp6r2|ENSMUSG00000036561.7|protein phosphatase 6, regulatory subunit 2
mm10_v2_chr9_-_99568849_99568911	0.11368	GCAGCAU	ENSMUST00000035043.5|Armc8|ENSMUSG00000032468.5|armadillo repeat containing 8
mm10_v2_chr8_-_8660773_8660773	0.111513	GCAGCAU	ENSMUST00000001319.7|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr4_+_59626189_59626253	0.110191	GCAGCAU	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr2_+_149830788_149830807	0.106765	GCAGCAU	ENSMUST00000109935.1|Syndig1|ENSMUSG00000074736.4|synapse differentiation inducing 1
mm10_v2_chr11_+_43528759_43528796	0.106329	GCAGCAU	ENSMUST00000050574.6|Ccnjl|ENSMUSG00000044707.7|cyclin J-like
mm10_v2_chr3_-_19163011_19163085	0.101753	GCAGCAU	ENSMUST00000029125.8|Armc1|ENSMUSG00000027599.8|armadillo repeat containing 1
mm10_v2_chr2_+_74691090_74691090	0.0952856	GCAGCAU	ENSMUST00000061745.3|Hoxd10|ENSMUSG00000050368.3|homeobox D10
mm10_v2_chr13_+_34875488_34875515	0.0934356	GCAGCAU	ENSMUST00000077853.3|Prpf4b|ENSMUSG00000021413.8|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm10_v2_chr6_-_99266494_99266540	0.0932235	GCAGCAU	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr5_+_15934685_15934696	0.0907805	GCAGCAU	ENSMUST00000078272.6|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000180204.1|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000167946.2|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000101581.3|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000039370.7|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm10_v2_chr12_-_98901478_98901492	0.087436	GCAGCAU	ENSMUST00000065716.6|Eml5|ENSMUSG00000051166.9|echinoderm microtubule associated protein like 5
mm10_v2_chr9_-_52168111_52168111	0.0806166	GCAGCAU	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr11_-_6475992_6476102	0.0779068	GCAGCAU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr17_-_81649607_81649607	0.0765318	GCAGCAU	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr1_-_155742120_155742136	0.0763642	GCAGCAU	ENSMUST00000027740.7|Lhx4|ENSMUSG00000026468.8|LIM homeobox protein 4
mm10_v2_chr2_-_69586021_69586065	0.0738796	GCAGCAU	ENSMUST00000100051.2|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000092551.4|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000080953.5|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2
mm10_v2_chr4_+_148591482_148591546	0.0724668	GCAGCAU	ENSMUST00000006611.8|Srm|ENSMUSG00000006442.10|spermidine synthase
mm10_v2_chr10_+_69533761_69533776	0.0723763	GCAGCAU	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr5_+_72914264_72914304	0.0717192	GCAGCAU	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chrX_+_56346390_56346415	0.0695088	GCAGCAU	ENSMUST00000101560.3|Zfp449|ENSMUSG00000073176.4|zinc finger protein 449
mm10_v2_chr2_-_33431324_33431324	0.0688657	GCAGCAU	ENSMUST00000113158.1|Zbtb34|ENSMUSG00000068966.4|zinc finger and BTB domain containing 34
mm10_v2_chr6_+_125215551_125215591	0.0661766	GCAGCAU	ENSMUST00000032487.7|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000100942.2|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1 	ENSMUST00000063588.8|Vamp1|ENSMUSG00000030337.10|vesicle-associated membrane protein 1
mm10_v2_chr9_-_59486610_59486621	0.0608083	GCAGCAU	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr12_+_110485710_110485755	0.0606676	GCAGCAU	ENSMUST00000084985.3|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform 	ENSMUST00000109832.1|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm10_v2_chr5_+_105876532_105876585	0.0596105	GCAGCAU	ENSMUST00000150440.1|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326 	ENSMUST00000031227.4|Zfp326|ENSMUSG00000029290.6|zinc finger protein 326
mm10_v2_chr18_-_20114767_20114782	0.0594902	GCAGCAU	ENSMUST00000038710.5|Dsc1|ENSMUSG00000044322.6|desmocollin 1
mm10_v2_chr7_-_116237767_116237781	0.0589223	GCAGCAU	ENSMUST00000182834.1|Plekha7|ENSMUSG00000045659.11|pleckstrin homology domain containing, family A member 7
mm10_v2_chr3_+_88142328_88142483	0.0577666	GCAGCAU	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr8_-_72548224_72548310	0.0571384	GCAGCAU	ENSMUST00000058534.5|Med26|ENSMUSG00000045248.5|mediator complex subunit 26
mm10_v2_chr8_+_93810832_93810843	0.0561302	GCAGCAU	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr19_+_40831248_40831292	0.0556666	GCAGCAU	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr5_+_3343893_3343945	0.0548623	GCAGCAU	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr2_-_103797617_103797662	0.0538475	GCAGCAU	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr12_+_12262139_12262157	0.0531571	GCAGCAU	ENSMUST00000069066.6|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A 	ENSMUST00000069005.8|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A
mm10_v2_chr11_+_73018986_73019047	0.0512243	GCAGCAU	ENSMUST00000092937.6|Camkk1|ENSMUSG00000020785.11|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm10_v2_chr1_-_119837613_119837673	0.051116	GCAGCAU	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr12_-_104751900_104751952	0.0493433	GCAGCAU	ENSMUST00000041987.6|Dicer1|ENSMUSG00000041415.9|dicer 1, ribonuclease type III
mm10_v2_chr5_+_130219706_130219744	0.0465801	GCAGCAU	ENSMUST00000065329.6|Tmem248|ENSMUSG00000053094.9|transmembrane protein 248
mm10_v2_chr5_+_129020069_129020272	0.0464268	GCAGCAU	ENSMUST00000031383.7|Ran|ENSMUSG00000029430.7|RAN, member RAS oncogene family 	ENSMUST00000111343.1|Ran|ENSMUSG00000029430.7|RAN, member RAS oncogene family
mm10_v2_chr7_+_98494222_98494222	0.0458125	GCAGCAU	ENSMUST00000165205.1|Lrrc32|ENSMUSG00000090958.1|leucine rich repeat containing 32
mm10_v2_chr5_+_34761734_34761780	0.0444781	GCAGCAU	ENSMUST00000080036.2|Htt|ENSMUSG00000029104.9|huntingtin
mm10_v2_chr17_-_75551838_75551946	0.043294	GCAGCAU	ENSMUST00000112507.3|Fam98a|ENSMUSG00000002017.9|family with sequence similarity 98, member A
mm10_v2_chr8_+_105276438_105276482	0.0431271	GCAGCAU	ENSMUST00000014920.6|Nol3|ENSMUSG00000014776.6|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm10_v2_chr7_+_82335732_82335732	0.0426135	GCAGCAU	ENSMUST00000173287.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr2_+_49451486_49451559	0.0389431	GCAGCAU	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr11_+_17159263_17159357	0.0386853	GCAGCAU	ENSMUST00000102880.4|Ppp3r1|ENSMUSG00000033953.10|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm10_v2_chr12_+_80790532_80790574	0.0386547	GCAGCAU	ENSMUST00000068519.5|4933426M11Rik|ENSMUSG00000021133.8|RIKEN cDNA 4933426M11 gene
mm10_v2_chr15_-_58076183_58076245	0.0350509	GCAGCAU	ENSMUST00000177504.2|9130401M01Rik|ENSMUSG00000022362.7|RIKEN cDNA 9130401M01 gene 	ENSMUST00000176076.1|9130401M01Rik|ENSMUSG00000022362.7|RIKEN cDNA 9130401M01 gene 	ENSMUST00000177176.1|9130401M01Rik|ENSMUSG00000022362.7|RIKEN cDNA 9130401M01 gene 	ENSMUST00000177276.1|Zhx1|ENSMUSG00000022361.8|zinc fingers and homeoboxes 1 	ENSMUST00000175805.2|Zhx1|ENSMUSG00000022361.8|zinc fingers and homeoboxes 1
mm10_v2_chr15_-_81871883_81871916	0.0335599	GCAGCAU	ENSMUST00000023117.8|Phf5a|ENSMUSG00000061360.7|PHD finger protein 5A
mm10_v2_chr10_+_63243785_63243846	0.0332518	GCAGCAU	ENSMUST00000020258.8|Herc4|ENSMUSG00000020064.8|hect domain and RLD 4
mm10_v2_chr1_+_64690443_64690467	0.0330257	GCAGCAU	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr15_+_79141324_79141358	0.0326741	GCAGCAU	ENSMUST00000040077.6|Polr2f|ENSMUSG00000033020.6|polymerase (RNA) II (DNA directed) polypeptide F
mm10_v2_chr18_-_34931993_34932007	0.0308607	GCAGCAU	ENSMUST00000025218.7|Etf1|ENSMUSG00000024360.7|eukaryotic translation termination factor 1
mm10_v2_chr12_+_35047180_35047230	0.0307611	GCAGCAU	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr4_+_41135743_41135898	0.0304913	GCAGCAU	ENSMUST00000040008.3|Ube2r2|ENSMUSG00000036241.3|ubiquitin-conjugating enzyme E2R 2
mm10_v2_chr5_-_123684289_123684379	0.0282078	GCAGCAU	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr9_+_21546842_21546936	0.0231406	GCAGCAU	ENSMUST00000034703.8|Carm1|ENSMUSG00000032185.8|coactivator-associated arginine methyltransferase 1 	ENSMUST00000115395.3|Carm1|ENSMUSG00000032185.8|coactivator-associated arginine methyltransferase 1 	ENSMUST00000115394.1|Carm1|ENSMUSG00000032185.8|coactivator-associated arginine methyltransferase 1
mm10_v2_chr11_-_96777492_96777559	0.0229693	GCAGCAU	ENSMUST00000127375.1|Snx11|ENSMUSG00000020876.8|sorting nexin 11 	ENSMUST00000021246.2|Snx11|ENSMUSG00000020876.8|sorting nexin 11 	ENSMUST00000107661.3|Snx11|ENSMUSG00000020876.8|sorting nexin 11
mm10_v2_chr15_-_91049823_91049948	0.0218285	GCAGCAU	ENSMUST00000088614.5|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000100304.4|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000067205.8|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109288.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109287.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A
mm10_v2_chr11_-_52000432_52000484	0.0189443	GCAGCAU	ENSMUST00000020657.6|Ube2b|ENSMUSG00000020390.6|ubiquitin-conjugating enzyme E2B
mm10_v2_chr1_+_156558844_156559049	0.01859	GCAGCAU	ENSMUST00000166172.2|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 	ENSMUST00000027888.6|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm10_v2_chr1_+_167001417_167001431	0.0183541	GCAGCAU	ENSMUST00000165874.1|Fam78b|ENSMUSG00000060568.8|family with sequence similarity 78, member B
mm10_v2_chr2_+_131262469_131262563	0.0159388	GCAGCAU	ENSMUST00000150843.1|Pank2|ENSMUSG00000037514.11|pantothenate kinase 2
mm10_v2_chr14_+_54883377_54883507	0.0149044	GCAGCAU	ENSMUST00000022806.3|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000134077.1|Gm20521|ENSMUSG00000092232.1|predicted gene 20521 	ENSMUST00000172844.1|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2 	ENSMUST00000133397.2|Bcl2l2|ENSMUSG00000089682.3|BCL2-like 2
mm10_v2_chr7_-_123369870_123369920	0.0139636	GCAGCAU	ENSMUST00000106442.2|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000098060.3|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000167309.1|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17
mm10_v2_chr6_+_17636983_17637014	0.0120562	GCAGCAU	ENSMUST00000015877.7|Capza2|ENSMUSG00000015733.7|capping protein (actin filament) muscle Z-line, alpha 2
mm10_v2_chr1_-_9700209_9700329	0.0115257	GCAGCAU	ENSMUST00000088658.4|Mybl1|ENSMUSG00000025912.10|myeloblastosis oncogene-like 1
mm10_v2_chr11_+_101176041_101176041	0.0111982	GCAGCAU	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr19_+_41482632_41482688	0.0092239	GCAGCAU	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr19_-_43388292_43388311	0.00430511	GCAGCAU	ENSMUST00000099428.3|Hpse2|ENSMUSG00000074852.3|heparanase 2
mm10_v2_chr1_+_162570687_162570837	0.00341765	GCAGCAU	ENSMUST00000050010.4|Vamp4|ENSMUSG00000026696.9|vesicle-associated membrane protein 4 	ENSMUST00000150040.1|Vamp4|ENSMUSG00000026696.9|vesicle-associated membrane protein 4
mm10_v2_chr5_+_67260565_67260692	0.00251081	GCAGCAU	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr6_+_113077354_113077382	0.000620574	GCAGCAU	ENSMUST00000042889.5|Setd5|ENSMUSG00000034269.6|SET domain containing 5
mm10_v2_chr5_-_5266038_5266292	5.30403e-05	GCAGCAU	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
