mm10_v2_chrX_+_139563316_139563339	1.38735	Foxq1	ENSMUST00000113027.1|Rnf128|ENSMUSG00000031438.5|ring finger protein 128
mm10_v2_chr8_+_45658731_45658804	1.36122	Foxq1	ENSMUST00000143820.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000132139.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr18_+_51117754_51117898	1.32745	Foxq1	ENSMUST00000116639.2|Prr16|ENSMUSG00000073565.4|proline rich 16
mm10_v2_chr5_+_146079254_146079258	1.24007	Foxq1	ENSMUST00000035571.8|Cyp3a59|ENSMUSG00000061292.6|cytochrome P450, family 3, subfamily a, polypeptide 59
mm10_v2_chr8_+_45658666_45658728	1.22026	Foxq1	ENSMUST00000134675.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000139869.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000126067.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr1_-_139560158_139560258	1.18297	Foxq1	ENSMUST00000160423.1|Cfhr1|ENSMUSG00000057037.6|complement factor H-related 1 	ENSMUST00000023965.5|Cfhr1|ENSMUSG00000057037.6|complement factor H-related 1
mm10_v2_chr2_-_77519565_77519647	1.16188	Foxq1	ENSMUST00000111830.2|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr5_-_145805862_145805876	1.15141	Foxq1	ENSMUST00000067479.5|Cyp3a44|ENSMUSG00000054417.5|cytochrome P450, family 3, subfamily a, polypeptide 44
mm10_v2_chr6_-_98342728_98342754	1.12414	Foxq1	ENSMUST00000164491.1|Gm765|ENSMUSG00000090667.1|predicted gene 765
mm10_v2_chr13_-_22219820_22219820	1.10951	Foxq1	ENSMUST00000057516.1|Vmn1r193|ENSMUSG00000046932.1|vomeronasal 1 receptor 193
mm10_v2_chr5_-_31108218_31108237	1.10482	Foxq1	ENSMUST00000182776.1|Slc30a3|ENSMUSG00000029151.8|solute carrier family 30 (zinc transporter), member 3 	ENSMUST00000182444.1|Slc30a3|ENSMUSG00000029151.8|solute carrier family 30 (zinc transporter), member 3
mm10_v2_chr1_+_51289106_51289142	1.07987	Foxq1	ENSMUST00000051572.6|Sdpr|ENSMUSG00000045954.6|serum deprivation response
mm10_v2_chr5_-_145879857_145879964	1.05506	Foxq1	ENSMUST00000035918.7|Cyp3a11|ENSMUSG00000056035.7|cytochrome P450, family 3, subfamily a, polypeptide 11
mm10_v2_chr5_-_145469723_145469723	1.02325	Foxq1	ENSMUST00000031633.4|Cyp3a16|ENSMUSG00000038656.5|cytochrome P450, family 3, subfamily a, polypeptide 16
mm10_v2_chr1_-_139781236_139781239	0.935055	Foxq1	ENSMUST00000027612.8|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111989.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788 	ENSMUST00000111986.2|Gm4788|ENSMUSG00000070594.4|predicted gene 4788
mm10_v2_chr3_+_135825648_135825664	0.881006	Foxq1	ENSMUST00000180196.1|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr14_-_36935560_36935578	0.807969	Foxq1	ENSMUST00000183038.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr15_+_54410755_54410797	0.803264	Foxq1	ENSMUST00000036737.3|Colec10|ENSMUSG00000038591.3|collectin sub-family member 10
mm10_v2_chr3_+_7366598_7366641	0.767813	Foxq1	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chr11_-_46389471_46389505	0.758806	Foxq1	ENSMUST00000109237.2|Itk|ENSMUSG00000020395.7|IL2 inducible T cell kinase
mm10_v2_chr16_+_43363855_43363888	0.756155	Foxq1	ENSMUST00000156367.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr2_-_37703275_37703290	0.684663	Foxq1	ENSMUST00000072186.5|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr18_-_39489157_39489283	0.676421	Foxq1	ENSMUST00000131885.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr11_-_46389509_46389525	0.670803	Foxq1	ENSMUST00000020664.6|Itk|ENSMUSG00000020395.7|IL2 inducible T cell kinase
mm10_v2_chr16_-_88563166_88563200	0.615957	Foxq1	ENSMUST00000049697.4|Cldn8|ENSMUSG00000050520.4|claudin 8
mm10_v2_chr17_+_12584183_12584195	0.594997	Foxq1	ENSMUST00000046959.7|Slc22a2|ENSMUSG00000040966.9|solute carrier family 22 (organic cation transporter), member 2
mm10_v2_chr5_+_102481546_102481560	0.591616	Foxq1	ENSMUST00000112854.1|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24
mm10_v2_chr3_+_68584154_68584181	0.583669	Foxq1	ENSMUST00000182997.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr12_+_77238093_77238122	0.545025	Foxq1	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr1_-_4360256_4360314	0.53656	Foxq1	ENSMUST00000027032.4|Rp1|ENSMUSG00000025900.5|retinitis pigmentosa 1 (human)
mm10_v2_chr2_+_91255954_91256105	0.534707	Foxq1	ENSMUST00000134699.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr11_-_46389454_46389467	0.534133	Foxq1	ENSMUST00000101306.3|Itk|ENSMUSG00000020395.7|IL2 inducible T cell kinase
mm10_v2_chr17_+_31433054_31433071	0.522849	Foxq1	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr2_-_91255995_91256047	0.522325	Foxq1	ENSMUST00000180732.1|Gm17281|ENSMUSG00000097317.1|predicted gene, 17281
mm10_v2_chr2_+_91256144_91256170	0.514116	Foxq1	ENSMUST00000154959.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3 	ENSMUST00000059566.4|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr19_+_30232921_30232940	0.500134	Foxq1	ENSMUST00000025797.5|Mbl2|ENSMUSG00000024863.5|mannose-binding lectin (protein C) 2
mm10_v2_chr10_+_34297421_34297513	0.490223	Foxq1	ENSMUST00000047935.6|Tspyl4|ENSMUSG00000039485.6|TSPY-like 4
mm10_v2_chr3_+_19957037_19957073	0.481835	Foxq1	ENSMUST00000091309.5|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000108329.1|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000003714.6|Cp|ENSMUSG00000003617.10|ceruloplasmin
mm10_v2_chr7_+_24134148_24134184	0.481534	Foxq1	ENSMUST00000056549.7|Zfp235|ENSMUSG00000047603.8|zinc finger protein 235
mm10_v2_chr11_-_62392605_62392659	0.478294	Foxq1	ENSMUST00000151498.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1 	ENSMUST00000159069.1|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr13_-_21453714_21453761	0.477099	Foxq1	ENSMUST00000032820.7|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26 	ENSMUST00000110485.1|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26
mm10_v2_chr4_+_97772734_97772848	0.46186	Foxq1	ENSMUST00000152023.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr10_+_88091070_88091076	0.460155	Foxq1	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr19_-_17837620_17837642	0.458126	Foxq1	ENSMUST00000025618.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5 	ENSMUST00000050715.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5
mm10_v2_chr2_-_51149100_51149115	0.457515	Foxq1	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr6_+_97991776_97991792	0.453838	Foxq1	ENSMUST00000043628.6|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr18_+_69344503_69344530	0.451381	Foxq1	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr19_-_28963863_28963908	0.450631	Foxq1	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr3_-_146781351_146781431	0.444584	Foxq1	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr10_+_97479470_97479500	0.440404	Foxq1	ENSMUST00000105287.3|Dcn|ENSMUSG00000019929.9|decorin
mm10_v2_chr1_+_13668739_13668772	0.437698	Foxq1	ENSMUST00000088542.3|Xkr9|ENSMUSG00000067813.3|X Kell blood group precursor related family member 9 homolog
mm10_v2_chrX_+_107149580_107149615	0.435347	Foxq1	ENSMUST00000137107.1|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene 	ENSMUST00000067249.2|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene
mm10_v2_chr11_-_107348130_107348179	0.431956	Foxq1	ENSMUST00000134763.1|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr14_-_103844173_103844198	0.425351	Foxq1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr4_+_34893772_34893788	0.422499	Foxq1	ENSMUST00000029975.3|Cga|ENSMUSG00000028298.4|glycoprotein hormones, alpha subunit 	ENSMUST00000135871.1|Cga|ENSMUSG00000028298.4|glycoprotein hormones, alpha subunit 	ENSMUST00000108130.1|Cga|ENSMUSG00000028298.4|glycoprotein hormones, alpha subunit
mm10_v2_chr4_+_139622842_139622902	0.419633	Foxq1	ENSMUST00000039818.9|Aldh4a1|ENSMUSG00000028737.9|aldehyde dehydrogenase 4 family, member A1
mm10_v2_chr5_+_102481374_102481391	0.413618	Foxq1	ENSMUST00000094559.2|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24 	ENSMUST00000073302.5|Arhgap24|ENSMUSG00000057315.8|Rho GTPase activating protein 24
mm10_v2_chr19_+_6184363_6184467	0.408579	Foxq1	ENSMUST00000025699.2|1700123I01Rik|ENSMUSG00000024786.3|RIKEN cDNA 1700123I01 gene 	ENSMUST00000113528.1|1700123I01Rik|ENSMUSG00000024786.3|RIKEN cDNA 1700123I01 gene
mm10_v2_chr18_+_37477768_37477835	0.407717	Foxq1	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chrX_+_107149454_107149500	0.401797	Foxq1	ENSMUST00000125676.1|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene 	ENSMUST00000180182.1|A630033H20Rik|ENSMUSG00000054293.4|RIKEN cDNA A630033H20 gene
mm10_v2_chrX_-_75380041_75380041	0.392981	Foxq1	ENSMUST00000114085.2|F8|ENSMUSG00000031196.7|coagulation factor VIII
mm10_v2_chr18_+_11657349_11657486	0.391389	Foxq1	ENSMUST00000047322.6|Rbbp8|ENSMUSG00000041238.9|retinoblastoma binding protein 8
mm10_v2_chr4_-_45532470_45532470	0.386989	Foxq1	ENSMUST00000147448.1|Shb|ENSMUSG00000044813.9|src homology 2 domain-containing transforming protein B
mm10_v2_chr12_+_7977640_7977779	0.384364	Foxq1	ENSMUST00000171271.1|Apob|ENSMUSG00000020609.8|apolipoprotein B 	ENSMUST00000037811.6|Apob|ENSMUSG00000020609.8|apolipoprotein B 	ENSMUST00000037520.7|Apob|ENSMUSG00000020609.8|apolipoprotein B
mm10_v2_chr16_-_85550417_85550432	0.38384	Foxq1	ENSMUST00000175700.1|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1 	ENSMUST00000114174.2|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1
mm10_v2_chr5_+_139543889_139543904	0.381341	Foxq1	ENSMUST00000174792.1|Uncx|ENSMUSG00000029546.11|UNC homeobox 	ENSMUST00000031523.8|Uncx|ENSMUSG00000029546.11|UNC homeobox
mm10_v2_chr1_+_43098710_43098760	0.380977	Foxq1	ENSMUST00000010434.7|AI597479|ENSMUSG00000010290.7|expressed sequence AI597479
mm10_v2_chr2_-_148040196_148040211	0.371982	Foxq1	ENSMUST00000136555.1|9030622O22Rik|ENSMUSG00000086141.1|RIKEN cDNA 9030622O22 gene
mm10_v2_chr9_-_100506844_100506856	0.366289	Foxq1	ENSMUST00000112874.3|Nck1|ENSMUSG00000032475.9|non-catalytic region of tyrosine kinase adaptor protein 1
mm10_v2_chrX_-_70365052_70365112	0.36569	Foxq1	ENSMUST00000101509.2|Ids|ENSMUSG00000035847.9|iduronate 2-sulfatase
mm10_v2_chr5_-_122002340_122002368	0.352006	Foxq1	ENSMUST00000134326.1|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr19_+_43782181_43782193	0.346829	Foxq1	ENSMUST00000026208.4|Abcc2|ENSMUSG00000025194.4|ATP-binding cassette, sub-family C (CFTR/MRP), member 2
mm10_v2_chr18_+_37489465_37489465	0.337578	Foxq1	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr18_+_37496997_37496997	0.330893	Foxq1	ENSMUST00000059571.5|Pcdhb19|ENSMUSG00000043313.5|protocadherin beta 19
mm10_v2_chr9_+_15239045_15239155	0.330382	Foxq1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr11_-_54860564_54860608	0.324963	Foxq1	ENSMUST00000144164.1|Lyrm7|ENSMUSG00000020268.7|LYR motif containing 7
mm10_v2_chr6_-_130233322_130233322	0.324933	Foxq1	ENSMUST00000032286.6|Klra7|ENSMUSG00000067599.7|killer cell lectin-like receptor, subfamily A, member 7
mm10_v2_chr7_-_133782721_133782762	0.323866	Foxq1	ENSMUST00000063669.1|Dhx32|ENSMUSG00000030986.6|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm10_v2_chr17_-_32822200_32822200	0.32056	Foxq1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr1_+_33719863_33719901	0.309026	Foxq1	ENSMUST00000088287.3|Rab23|ENSMUSG00000004768.8|RAB23, member RAS oncogene family
mm10_v2_chr5_-_146220901_146220987	0.303507	Foxq1	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr15_-_97247287_97247315	0.297288	Foxq1	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr3_+_79884931_79885090	0.296633	Foxq1	ENSMUST00000135021.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr9_-_105521147_105521265	0.295877	Foxq1	ENSMUST00000176770.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000085133.6|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr8_-_84773381_84773427	0.289999	Foxq1	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr3_-_129332713_129332726	0.286771	Foxq1	ENSMUST00000029658.7|Enpep|ENSMUSG00000028024.8|glutamyl aminopeptidase
mm10_v2_chr18_+_37447641_37447674	0.283683	Foxq1	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chrM_+_5319_5333	0.283345	Foxq1	ENSMUST00000082402.1|mt-Co1|ENSMUSG00000064351.1|mitochondrially encoded cytochrome c oxidase I
mm10_v2_chr13_+_40917626_40917657	0.280745	Foxq1	ENSMUST00000067778.6|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr12_+_37242030_37242042	0.276662	Foxq1	ENSMUST00000160390.1|Agmo|ENSMUSG00000050103.11|alkylglycerol monooxygenase
mm10_v2_chr1_+_45311538_45311638	0.275868	Foxq1	ENSMUST00000087883.6|Col3a1|ENSMUSG00000026043.12|collagen, type III, alpha 1
mm10_v2_chr14_+_124005355_124005355	0.261667	Foxq1	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr1_-_43098622_43098686	0.26148	Foxq1	ENSMUST00000095014.1|Tgfbrap1|ENSMUSG00000070939.3|transforming growth factor, beta receptor associated protein 1
mm10_v2_chr12_+_111166485_111166520	0.258153	Foxq1	ENSMUST00000139162.1|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr2_-_126783416_126783452	0.256847	Foxq1	ENSMUST00000130356.1|Usp50|ENSMUSG00000027364.6|ubiquitin specific peptidase 50 	ENSMUST00000028842.2|Usp50|ENSMUSG00000027364.6|ubiquitin specific peptidase 50
mm10_v2_chr18_-_3281036_3281132	0.252751	Foxq1	ENSMUST00000049942.6|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000139537.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000124747.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr1_-_170110491_170110532	0.250451	Foxq1	ENSMUST00000027985.2|Ddr2|ENSMUSG00000026674.3|discoidin domain receptor family, member 2
mm10_v2_chr3_+_79884496_79884571	0.248913	Foxq1	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr16_+_43364145_43364204	0.246577	Foxq1	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr10_-_96409038_96409038	0.240604	Foxq1	ENSMUST00000179683.1|Gm20091|ENSMUSG00000094249.1|predicted gene, 20091
mm10_v2_chr5_+_122643878_122644009	0.240436	Foxq1	ENSMUST00000100737.3|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000121489.1|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000031425.8|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000086247.5|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7
mm10_v2_chr7_-_38019505_38019552	0.239181	Foxq1	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr10_+_69925954_69926133	0.238718	Foxq1	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_+_20148457_20148478	0.236886	Foxq1	ENSMUST00000020173.8|Map7|ENSMUSG00000019996.10|microtubule-associated protein 7
mm10_v2_chr12_-_104865076_104865138	0.236878	Foxq1	ENSMUST00000109937.1|Clmn|ENSMUSG00000021097.8|calmin 	ENSMUST00000109936.1|Clmn|ENSMUSG00000021097.8|calmin
mm10_v2_chr19_-_36919606_36919622	0.236118	Foxq1	ENSMUST00000057337.7|Fgfbp3|ENSMUSG00000047632.10|fibroblast growth factor binding protein 3
mm10_v2_chr17_+_35077080_35077155	0.233251	Foxq1	ENSMUST00000172959.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr11_+_77765588_77765643	0.228247	Foxq1	ENSMUST00000164315.1|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr3_+_122419772_122419787	0.221916	Foxq1	ENSMUST00000029766.4|Bcar3|ENSMUSG00000028121.4|breast cancer anti-estrogen resistance 3
mm10_v2_chr18_+_37442517_37442517	0.220972	Foxq1	ENSMUST00000056915.1|Pcdhb13|ENSMUSG00000047307.1|protocadherin beta 13
mm10_v2_chr18_-_88927447_88927481	0.214192	Foxq1	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr1_+_156838915_156838978	0.210435	Foxq1	ENSMUST00000111720.1|Angptl1|ENSMUSG00000033544.6|angiopoietin-like 1
mm10_v2_chr11_+_97029925_97029997	0.20895	Foxq1	ENSMUST00000021249.4|Scrn2|ENSMUSG00000020877.5|secernin 2
mm10_v2_chr11_+_97030130_97030173	0.196104	Foxq1	ENSMUST00000153482.1|Scrn2|ENSMUSG00000020877.5|secernin 2
mm10_v2_chr19_+_45149833_45149878	0.192325	Foxq1	ENSMUST00000026236.9|Tlx1|ENSMUSG00000025215.9|T cell leukemia, homeobox 1
mm10_v2_chr4_+_109343029_109343081	0.190061	Foxq1	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr14_+_53763083_53763185	0.186451	Foxq1	ENSMUST00000180859.1|Trav14-3|ENSMUSG00000094212.2|T cell receptor alpha variable 14-3 	ENSMUST00000103589.4|Trav14-3|ENSMUSG00000094212.2|T cell receptor alpha variable 14-3
mm10_v2_chr4_+_108479081_108479224	0.184599	Foxq1	ENSMUST00000155068.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chrX_-_157568983_157568991	0.179383	Foxq1	ENSMUST00000065806.4|Yy2|ENSMUSG00000091736.2|Yy2 transcription factor
mm10_v2_chr9_-_36797303_36797425	0.176158	Foxq1	ENSMUST00000115086.5|Ei24|ENSMUSG00000062762.9|etoposide induced 2.4 mRNA
mm10_v2_chr1_+_87404916_87404964	0.17606	Foxq1	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr5_-_73630303_73630343	0.172365	Foxq1	ENSMUST00000152215.1|Lrrc66|ENSMUSG00000067206.2|leucine rich repeat containing 66
mm10_v2_chrX_-_103483205_103483225	0.172206	Foxq1	ENSMUST00000127786.2|Xist|ENSMUSG00000086503.2|inactive X specific transcripts
mm10_v2_chr3_+_96645579_96645608	0.163778	Foxq1	ENSMUST00000119365.1|Itga10|ENSMUSG00000090210.1|integrin, alpha 10 	ENSMUST00000029744.5|Itga10|ENSMUSG00000090210.1|integrin, alpha 10
mm10_v2_chr3_-_36053512_36053547	0.163407	Foxq1	ENSMUST00000166644.2|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B 	ENSMUST00000062056.8|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B
mm10_v2_chr17_+_35076902_35077073	0.163325	Foxq1	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr12_+_111166536_111166548	0.162601	Foxq1	ENSMUST00000060274.6|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr5_-_145720124_145720136	0.1607	Foxq1	ENSMUST00000094111.4|Cyp3a41a|ENSMUSG00000075551.3|cytochrome P450, family 3, subfamily a, polypeptide 41A
mm10_v2_chr3_+_145987835_145987901	0.155905	Foxq1	ENSMUST00000039517.6|Syde2|ENSMUSG00000036863.7|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm10_v2_chr16_-_56024628_56024668	0.155159	Foxq1	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr11_+_82911253_82911294	0.150406	Foxq1	ENSMUST00000164945.1|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans) 	ENSMUST00000018989.7|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans)
mm10_v2_chr16_+_13358375_13358439	0.143102	Foxq1	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr16_-_26526744_26526774	0.141311	Foxq1	ENSMUST00000165687.1|Tmem207|ENSMUSG00000091972.1|transmembrane protein 207
mm10_v2_chr14_+_52753367_52753398	0.136966	Foxq1	ENSMUST00000180717.1|Trav6d-4|ENSMUSG00000095387.4|T cell receptor alpha variable 6D-4 	ENSMUST00000183820.1|Trav6d-4|ENSMUSG00000095387.4|T cell receptor alpha variable 6D-4
mm10_v2_chr8_-_3854309_3854309	0.132075	Foxq1	ENSMUST00000033888.4|Cd209e|ENSMUSG00000040197.4|CD209e antigen
mm10_v2_chr7_+_24270420_24270420	0.130889	Foxq1	ENSMUST00000108438.3|Zfp93|ENSMUSG00000055305.9|zinc finger protein 93
mm10_v2_chr4_-_15945359_15945507	0.129126	Foxq1	ENSMUST00000029877.8|Decr1|ENSMUSG00000028223.8|2,4-dienoyl CoA reductase 1, mitochondrial
mm10_v2_chr11_-_100822525_100822576	0.123057	Foxq1	ENSMUST00000107358.2|Stat5b|ENSMUSG00000020919.5|signal transducer and activator of transcription 5B
mm10_v2_chr12_+_110841021_110841037	0.118129	Foxq1	ENSMUST00000181348.1|4921507G05Rik|ENSMUSG00000097650.1|RIKEN cDNA 4921507G05 gene
mm10_v2_chr3_+_99885383_99885419	0.116758	Foxq1	ENSMUST00000164539.1|Spag17|ENSMUSG00000027867.10|sperm associated antigen 17
mm10_v2_chr13_-_67637776_67637801	0.115132	Foxq1	ENSMUST00000012314.8|A530054K11Rik|ENSMUSG00000021510.10|RIKEN cDNA A530054K11 gene
mm10_v2_chr17_+_20570362_20570362	0.105999	Foxq1	ENSMUST00000095633.3|Gm5145|ENSMUSG00000071273.3|predicted pseudogene 5145
mm10_v2_chr12_-_101958148_101958246	0.102313	Foxq1	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr1_-_44101661_44101673	0.0978125	Foxq1	ENSMUST00000152239.1|Tex30|ENSMUSG00000026049.5|testis expressed 30
mm10_v2_chr10_-_107486077_107486134	0.0946356	Foxq1	ENSMUST00000000445.1|Myf5|ENSMUSG00000000435.1|myogenic factor 5
mm10_v2_chr1_-_195131536_195131588	0.0888915	Foxq1	ENSMUST00000075451.6|Cr1l|ENSMUSG00000016481.10|complement component (3b/4b) receptor 1-like
mm10_v2_chr8_+_78509319_78509399	0.0885812	Foxq1	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr6_-_129237948_129237987	0.0877232	Foxq1	ENSMUST00000181238.1|2310001H17Rik|ENSMUSG00000097354.1|RIKEN cDNA 2310001H17 gene 	ENSMUST00000180379.1|2310001H17Rik|ENSMUSG00000097354.1|RIKEN cDNA 2310001H17 gene
mm10_v2_chr2_+_60209887_60210073	0.0868929	Foxq1	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr3_+_136670076_136670186	0.0862446	Foxq1	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr2_-_176917518_176917518	0.0851248	Foxq1	ENSMUST00000108931.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr2_+_112284561_112284610	0.0815108	Foxq1	ENSMUST00000053666.7|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr11_-_99620432_99620436	0.0751243	Foxq1	ENSMUST00000073853.2|Gm11562|ENSMUSG00000062278.2|predicted gene 11562
mm10_v2_chr6_+_117907795_117907832	0.0747485	Foxq1	ENSMUST00000167657.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F
mm10_v2_chrX_-_142196917_142196931	0.0730182	Foxq1	ENSMUST00000042530.3|Gucy2f|ENSMUSG00000042282.4|guanylate cyclase 2f
mm10_v2_chr9_+_45319072_45319100	0.0697168	Foxq1	ENSMUST00000034597.7|Tmprss13|ENSMUSG00000037129.7|transmembrane protease, serine 13
mm10_v2_chr2_+_152669461_152669539	0.0696756	Foxq1	ENSMUST00000125366.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000109825.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000089059.2|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000079247.3|H13|ENSMUSG00000019188.10|histocompatibility 13
mm10_v2_chr4_+_32243733_32243733	0.0693679	Foxq1	ENSMUST00000165661.1|D130062J21Rik|ENSMUSG00000090278.1|RIKEN cDNA D130062J21 gene
mm10_v2_chr14_-_30353468_30353535	0.0680898	Foxq1	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr8_-_67515606_67515606	0.0665099	Foxq1	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr8_-_53638945_53639065	0.0609494	Foxq1	ENSMUST00000047768.4|Neil3|ENSMUSG00000039396.4|nei like 3 (E. coli)
mm10_v2_chr13_+_96082158_96082158	0.0608509	Foxq1	ENSMUST00000185178.1|Gm17190|ENSMUSG00000099115.1|predicted gene 17190
mm10_v2_chr10_+_96616998_96617015	0.0591439	Foxq1	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr13_-_67061131_67061178	0.0587304	Foxq1	ENSMUST00000167565.1|Zfp712|ENSMUSG00000090641.1|zinc finger protein 712
mm10_v2_chr5_-_130255525_130255537	0.0579915	Foxq1	ENSMUST00000026387.4|Sbds|ENSMUSG00000025337.4|Shwachman-Bodian-Diamond syndrome homolog (human)
mm10_v2_chr10_+_42860543_42860627	0.0552814	Foxq1	ENSMUST00000157071.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr7_+_141476374_141476400	0.0545846	Foxq1	ENSMUST00000117634.1|Tspan4|ENSMUSG00000025511.8|tetraspanin 4
mm10_v2_chr1_-_13372434_13372457	0.0508392	Foxq1	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr17_-_34118476_34118522	0.0490125	Foxq1	ENSMUST00000095347.5|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr5_+_107597760_107597784	0.0461807	Foxq1	ENSMUST00000112655.1|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2
mm10_v2_chr2_-_6722187_6722236	0.042548	Foxq1	ENSMUST00000182657.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr5_+_21737141_21737179	0.0422403	Foxq1	ENSMUST00000030882.5|Pmpcb|ENSMUSG00000029017.7|peptidase (mitochondrial processing) beta
mm10_v2_chrX_-_9469288_9469331	0.0422211	Foxq1	ENSMUST00000015484.3|Cybb|ENSMUSG00000015340.4|cytochrome b-245, beta polypeptide
mm10_v2_chr7_+_120677579_120677630	0.0391533	Foxq1	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr11_-_99493112_99493137	0.0381823	Foxq1	ENSMUST00000006969.7|Krt23|ENSMUSG00000006777.7|keratin 23
mm10_v2_chr2_-_37647199_37647285	0.0351193	Foxq1	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr3_-_57301919_57301956	0.0349629	Foxq1	ENSMUST00000029376.8|Tm4sf1|ENSMUSG00000027800.8|transmembrane 4 superfamily member 1
mm10_v2_chr4_+_107314363_107314397	0.0329242	Foxq1	ENSMUST00000075693.5|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1 	ENSMUST00000139527.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1
mm10_v2_chr10_+_24049482_24049482	0.0322547	Foxq1	ENSMUST00000071691.2|Taar7f|ENSMUSG00000093811.1|trace amine-associated receptor 7F
mm10_v2_chr17_-_40319205_40319208	0.0317	Foxq1	ENSMUST00000026498.4|Crisp1|ENSMUSG00000025431.4|cysteine-rich secretory protein 1
mm10_v2_chr5_+_107597696_107597735	0.0264016	Foxq1	ENSMUST00000112651.1|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2 	ENSMUST00000112654.1|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2 	ENSMUST00000065422.5|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2
mm10_v2_chr4_+_107314399_107314437	0.0256016	Foxq1	ENSMUST00000128284.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1 	ENSMUST00000124650.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1
mm10_v2_chr10_-_130112788_130112788	0.0198774	Foxq1	ENSMUST00000081469.1|Olfr823|ENSMUSG00000096747.1|olfactory receptor 823
mm10_v2_chr5_+_135725713_135725740	0.0170852	Foxq1	ENSMUST00000127096.1|Por|ENSMUSG00000005514.8|P450 (cytochrome) oxidoreductase
mm10_v2_chr5_+_104202609_104202624	0.0120298	Foxq1	ENSMUST00000066708.5|Dmp1|ENSMUSG00000029307.6|dentin matrix protein 1
mm10_v2_chr5_-_99252839_99252927	0.011028	Foxq1	ENSMUST00000168092.1|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B 	ENSMUST00000031276.8|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B
mm10_v2_chr5_-_76331102_76331142	0.0105792	Foxq1	ENSMUST00000122213.1|Pdcl2|ENSMUSG00000029235.8|phosducin-like 2
mm10_v2_chr2_+_35224516_35224548	0.00603269	Foxq1	ENSMUST00000124489.1|Gm13605|ENSMUSG00000084768.1|predicted gene 13605
mm10_v2_chr19_-_56822161_56822220	0.00601801	Foxq1	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr10_+_60106452_60106468	0.00564015	Foxq1	ENSMUST00000165024.2|Spock2|ENSMUSG00000058297.10|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm10_v2_chr6_-_48086530_48086658	0.00545905	Foxq1	ENSMUST00000073124.6|Zfp746|ENSMUSG00000057691.6|zinc finger protein 746
