mm10_v2_chr1_+_187997821_187997834	1.14822	CCUUCAU	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr10_-_128589650_128589673	1.14361	CCUUCAU	ENSMUST00000082059.6|Erbb3|ENSMUSG00000018166.8|v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)
mm10_v2_chr10_-_127621107_127621166	0.929007	CCUUCAU	ENSMUST00000049149.8|Lrp1|ENSMUSG00000040249.9|low density lipoprotein receptor-related protein 1
mm10_v2_chr10_+_34483400_34483445	0.909758	CCUUCAU	ENSMUST00000019913.7|Frk|ENSMUSG00000019779.8|fyn-related kinase 	ENSMUST00000170771.1|Frk|ENSMUSG00000019779.8|fyn-related kinase
mm10_v2_chr16_+_21891969_21891969	0.875459	CCUUCAU	ENSMUST00000042065.6|Map3k13|ENSMUSG00000033618.6|mitogen-activated protein kinase kinase kinase 13
mm10_v2_chr12_+_82170016_82170173	0.85594	CCUUCAU	ENSMUST00000166429.1|Sipa1l1|ENSMUSG00000042700.9|signal-induced proliferation-associated 1 like 1
mm10_v2_chr7_+_114415272_114415297	0.815782	CCUUCAU	ENSMUST00000032909.8|Pde3b|ENSMUSG00000030671.8|phosphodiesterase 3B, cGMP-inhibited
mm10_v2_chr10_-_88503952_88503973	0.773678	CCUUCAU	ENSMUST00000020253.8|Chpt1|ENSMUSG00000060002.8|choline phosphotransferase 1
mm10_v2_chr11_+_90249469_90249482	0.755559	CCUUCAU	ENSMUST00000004050.6|Mmd|ENSMUSG00000003948.10|monocyte to macrophage differentiation-associated
mm10_v2_chr2_-_26092149_26092177	0.703434	CCUUCAU	ENSMUST00000114159.2|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm10_v2_chr5_+_43233463_43233491	0.664485	CCUUCAU	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr8_-_121652895_121652913	0.638603	CCUUCAU	ENSMUST00000046386.4|Zcchc14|ENSMUSG00000061410.6|zinc finger, CCHC domain containing 14
mm10_v2_chr3_-_115715031_115715062	0.625981	CCUUCAU	ENSMUST00000055676.2|S1pr1|ENSMUSG00000045092.7|sphingosine-1-phosphate receptor 1
mm10_v2_chr8_+_107293463_107293483	0.590194	CCUUCAU	ENSMUST00000169453.1|Nfat5|ENSMUSG00000003847.10|nuclear factor of activated T cells 5
mm10_v2_chr17_+_13760502_13760674	0.589705	CCUUCAU	ENSMUST00000139347.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000156591.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000170827.2|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000139666.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000137784.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000137708.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 	ENSMUST00000150848.1|Mllt4|ENSMUSG00000068036.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
mm10_v2_chr16_-_23988852_23988852	0.584662	CCUUCAU	ENSMUST00000023151.5|Bcl6|ENSMUSG00000022508.5|B cell leukemia/lymphoma 6
mm10_v2_chr8_+_76899772_76899828	0.563885	CCUUCAU	ENSMUST00000109913.2|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr19_+_3986564_3986661	0.511105	CCUUCAU	ENSMUST00000054030.7|Acy3|ENSMUSG00000024866.9|aspartoacylase (aminoacylase) 3
mm10_v2_chr6_+_86195214_86195251	0.497689	CCUUCAU	ENSMUST00000032066.9|Tgfa|ENSMUSG00000029999.9|transforming growth factor alpha
mm10_v2_chr16_+_42907563_42907684	0.483446	CCUUCAU	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr5_+_88886809_88886825	0.479973	CCUUCAU	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr1_+_182409162_182409184	0.463018	CCUUCAU	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr19_+_18749983_18749983	0.452788	CCUUCAU	ENSMUST00000040489.7|Trpm6|ENSMUSG00000024727.8|transient receptor potential cation channel, subfamily M, member 6
mm10_v2_chr9_+_68653761_68653786	0.449877	CCUUCAU	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr9_+_47530173_47530373	0.437198	CCUUCAU	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr5_-_104021919_104021945	0.435717	CCUUCAU	ENSMUST00000031251.9|Hsd17b11|ENSMUSG00000029311.10|hydroxysteroid (17-beta) dehydrogenase 11
mm10_v2_chr8_+_46471041_46471078	0.435564	CCUUCAU	ENSMUST00000034046.5|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr17_-_46031813_46031863	0.426003	CCUUCAU	ENSMUST00000024747.7|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A
mm10_v2_chr18_+_5591860_5591902	0.42233	CCUUCAU	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chrX_-_136868537_136868755	0.418024	CCUUCAU	ENSMUST00000058814.6|Rab9b|ENSMUSG00000043463.6|RAB9B, member RAS oncogene family
mm10_v2_chr2_-_160872552_160872622	0.416355	CCUUCAU	ENSMUST00000103111.2|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
mm10_v2_chr15_-_82690499_82690499	0.405728	CCUUCAU	ENSMUST00000100380.3|Cyp2d37-ps|ENSMUSG00000075517.3|cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
mm10_v2_chr19_-_40402267_40402267	0.394623	CCUUCAU	ENSMUST00000099467.3|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000099466.3|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000165212.1|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000165469.1|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1
mm10_v2_chr4_+_11156411_11156453	0.393987	CCUUCAU	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr18_+_31931470_31931520	0.378396	CCUUCAU	ENSMUST00000025254.7|Lims2|ENSMUSG00000024395.7|LIM and senescent cell antigen like domains 2
mm10_v2_chr3_+_132684106_132684145	0.376769	CCUUCAU	ENSMUST00000169172.1|Tbck|ENSMUSG00000028030.6|TBC1 domain containing kinase 	ENSMUST00000029664.6|Tbck|ENSMUSG00000028030.6|TBC1 domain containing kinase
mm10_v2_chr15_-_60824942_60825080	0.360305	CCUUCAU	ENSMUST00000100635.3|Fam84b|ENSMUSG00000072568.3|family with sequence similarity 84, member B
mm10_v2_chr11_-_35980473_35980579	0.347305	CCUUCAU	ENSMUST00000018993.6|Wwc1|ENSMUSG00000018849.6|WW, C2 and coiled-coil domain containing 1
mm10_v2_chr8_+_88199194_88199224	0.340648	CCUUCAU	ENSMUST00000119033.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000066748.3|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000118952.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5
mm10_v2_chr16_-_3872378_3872411	0.33931	CCUUCAU	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr2_-_125782834_125782870	0.33891	CCUUCAU	ENSMUST00000053699.6|Secisbp2l|ENSMUSG00000035093.10|SECIS binding protein 2-like
mm10_v2_chr5_-_66173051_66173117	0.337026	CCUUCAU	ENSMUST00000113726.1|Rbm47|ENSMUSG00000070780.5|RNA binding motif protein 47
mm10_v2_chr6_+_37870786_37870882	0.333513	CCUUCAU	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr3_-_104220360_104220378	0.3324	CCUUCAU	ENSMUST00000064371.7|Magi3|ENSMUSG00000052539.9|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm10_v2_chr19_+_21653302_21653320	0.306097	CCUUCAU	ENSMUST00000052556.3|Abhd17b|ENSMUSG00000047368.3|abhydrolase domain containing 17B
mm10_v2_chr6_+_143167210_143167267	0.305387	CCUUCAU	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr4_-_155345696_155345799	0.304917	CCUUCAU	ENSMUST00000103178.4|Prkcz|ENSMUSG00000029053.10|protein kinase C, zeta
mm10_v2_chr16_+_57121705_57121761	0.295998	CCUUCAU	ENSMUST00000166897.1|Tomm70a|ENSMUSG00000022752.8|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm10_v2_chr7_+_120677579_120677630	0.290604	CCUUCAU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr11_-_50325599_50325673	0.278699	CCUUCAU	ENSMUST00000179865.1|Canx|ENSMUSG00000020368.9|calnexin 	ENSMUST00000020637.8|Canx|ENSMUSG00000020368.9|calnexin
mm10_v2_chr14_-_100149764_100149764	0.272693	CCUUCAU	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr19_-_7483241_7483289	0.270885	CCUUCAU	ENSMUST00000025667.6|Rtn3|ENSMUSG00000024758.8|reticulon 3 	ENSMUST00000065304.5|Rtn3|ENSMUSG00000024758.8|reticulon 3 	ENSMUST00000088171.4|Rtn3|ENSMUSG00000024758.8|reticulon 3
mm10_v2_chr17_-_64331817_64331957	0.268748	CCUUCAU	ENSMUST00000172733.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing 	ENSMUST00000172818.1|Pja2|ENSMUSG00000024083.9|praja 2, RING-H2 motif containing
mm10_v2_chr7_+_110018301_110018425	0.265959	CCUUCAU	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chr6_+_72414301_72414319	0.264212	CCUUCAU	ENSMUST00000065906.7|Ggcx|ENSMUSG00000053460.7|gamma-glutamyl carboxylase
mm10_v2_chr10_+_82859198_82859217	0.263833	CCUUCAU	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chrX_+_98149666_98149721	0.257242	CCUUCAU	ENSMUST00000052837.7|Ar|ENSMUSG00000046532.7|androgen receptor
mm10_v2_chr8_-_67974567_67974596	0.253679	CCUUCAU	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr8_-_104395765_104395858	0.251895	CCUUCAU	ENSMUST00000179802.1|Cmtm4|ENSMUSG00000096188.1|CKLF-like MARVEL transmembrane domain containing 4
mm10_v2_chr17_+_26715644_26715724	0.25149	CCUUCAU	ENSMUST00000062519.7|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000144221.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000142539.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000151681.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor
mm10_v2_chr2_+_138256530_138256615	0.249984	CCUUCAU	ENSMUST00000091556.5|Btbd3|ENSMUSG00000062098.5|BTB (POZ) domain containing 3
mm10_v2_chr6_+_4600840_4600956	0.249161	CCUUCAU	ENSMUST00000015333.5|Casd1|ENSMUSG00000015189.6|CAS1 domain containing 1
mm10_v2_chr1_-_165934900_165935036	0.246068	CCUUCAU	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr14_+_11553523_11553542	0.23486	CCUUCAU	ENSMUST00000022264.6|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr1_-_190170671_190170744	0.234713	CCUUCAU	ENSMUST00000175916.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr3_+_58576636_58576717	0.23375	CCUUCAU	ENSMUST00000107924.1|Selt|ENSMUSG00000075700.9|selenoprotein T
mm10_v2_chr5_+_108694222_108694255	0.226475	CCUUCAU	ENSMUST00000013633.8|Fgfrl1|ENSMUSG00000008090.8|fibroblast growth factor receptor-like 1 	ENSMUST00000112560.3|Fgfrl1|ENSMUSG00000008090.8|fibroblast growth factor receptor-like 1
mm10_v2_chr18_-_34931993_34932007	0.223733	CCUUCAU	ENSMUST00000025218.7|Etf1|ENSMUSG00000024360.7|eukaryotic translation termination factor 1
mm10_v2_chr8_-_47990535_47990577	0.217978	CCUUCAU	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr11_+_87592145_87592229	0.216268	CCUUCAU	ENSMUST00000103179.3|Mtmr4|ENSMUSG00000018401.11|myotubularin related protein 4 	ENSMUST00000092802.5|Mtmr4|ENSMUSG00000018401.11|myotubularin related protein 4 	ENSMUST00000146871.1|Mtmr4|ENSMUSG00000018401.11|myotubularin related protein 4
mm10_v2_chr3_+_41555723_41555745	0.213573	CCUUCAU	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr11_+_106066055_106066100	0.205532	CCUUCAU	ENSMUST00000002048.7|Taco1|ENSMUSG00000001983.7|translational activator of mitochondrially encoded cytochrome c oxidase I
mm10_v2_chr6_-_134566913_134566995	0.199552	CCUUCAU	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr4_+_150853919_150854050	0.198393	CCUUCAU	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr15_-_53346118_53346169	0.198296	CCUUCAU	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr9_+_50494516_50494533	0.193136	CCUUCAU	ENSMUST00000114474.1|1600029D21Rik|ENSMUSG00000032068.8|RIKEN cDNA 1600029D21 gene
mm10_v2_chr7_-_110614761_110614928	0.191193	CCUUCAU	ENSMUST00000166020.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000171218.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000033058.7|Sbf2|ENSMUSG00000038371.8|SET binding factor 2 	ENSMUST00000164759.1|Sbf2|ENSMUSG00000038371.8|SET binding factor 2
mm10_v2_chr1_+_164249023_164249051	0.190448	CCUUCAU	ENSMUST00000044021.5|Slc19a2|ENSMUSG00000040918.6|solute carrier family 19 (thiamine transporter), member 2
mm10_v2_chr12_-_86884808_86884842	0.1866	CCUUCAU	ENSMUST00000038422.6|Irf2bpl|ENSMUSG00000034168.6|interferon regulatory factor 2 binding protein-like
mm10_v2_chr14_-_78536762_78536851	0.183094	CCUUCAU	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr11_+_98937669_98937735	0.182726	CCUUCAU	ENSMUST00000107475.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha 	ENSMUST00000068133.3|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr8_-_27174623_27174651	0.176212	CCUUCAU	ENSMUST00000033878.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I) 	ENSMUST00000054212.6|Rab11fip1|ENSMUSG00000031488.7|RAB11 family interacting protein 1 (class I)
mm10_v2_chr16_+_41532999_41533069	0.174639	CCUUCAU	ENSMUST00000099761.3|Lsamp|ENSMUSG00000061080.5|limbic system-associated membrane protein
mm10_v2_chr3_-_144570136_144570227	0.174443	CCUUCAU	ENSMUST00000043325.7|Hs2st1|ENSMUSG00000040151.8|heparan sulfate 2-O-sulfotransferase 1
mm10_v2_chrX_+_99821021_99821021	0.173316	CCUUCAU	ENSMUST00000096363.2|Tmem28|ENSMUSG00000071719.2|transmembrane protein 28
mm10_v2_chr14_+_122107038_122107070	0.170402	CCUUCAU	ENSMUST00000026624.4|Tm9sf2|ENSMUSG00000025544.7|transmembrane 9 superfamily member 2
mm10_v2_chr6_-_11907419_11907484	0.168915	CCUUCAU	ENSMUST00000031637.5|Ndufa4|ENSMUSG00000029632.5|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4
mm10_v2_chr18_+_32163073_32163115	0.168841	CCUUCAU	ENSMUST00000096575.3|Map3k2|ENSMUSG00000024383.8|mitogen-activated protein kinase kinase kinase 2
mm10_v2_chrX_-_95956890_95956918	0.165513	CCUUCAU	ENSMUST00000079987.6|Las1l|ENSMUSG00000057421.6|LAS1-like (S. cerevisiae) 	ENSMUST00000113864.2|Las1l|ENSMUSG00000057421.6|LAS1-like (S. cerevisiae)
mm10_v2_chr18_+_74442500_74442537	0.161093	CCUUCAU	ENSMUST00000074157.6|Myo5b|ENSMUSG00000025885.12|myosin VB
mm10_v2_chrX_-_48208566_48208691	0.159997	CCUUCAU	ENSMUST00000037960.4|Zdhhc9|ENSMUSG00000036985.6|zinc finger, DHHC domain containing 9
mm10_v2_chr4_-_57143437_57143624	0.145633	CCUUCAU	ENSMUST00000095076.3|Epb4.1l4b|ENSMUSG00000028434.6|erythrocyte protein band 4.1-like 4b 	ENSMUST00000030142.3|Epb4.1l4b|ENSMUSG00000028434.6|erythrocyte protein band 4.1-like 4b
mm10_v2_chr12_-_4477138_4477196	0.144704	CCUUCAU	ENSMUST00000085814.3|Ncoa1|ENSMUSG00000020647.9|nuclear receptor coactivator 1
mm10_v2_chr14_+_59201209_59201267	0.143254	CCUUCAU	ENSMUST00000173547.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000043227.6|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000022551.7|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr14_+_79481164_79481194	0.138021	CCUUCAU	ENSMUST00000040131.5|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr19_-_59943647_59943678	0.136349	CCUUCAU	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr19_-_41263931_41264008	0.135912	CCUUCAU	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr15_-_35155750_35155806	0.134311	CCUUCAU	ENSMUST00000067033.7|Stk3|ENSMUSG00000022329.8|serine/threonine kinase 3 	ENSMUST00000018476.7|Stk3|ENSMUSG00000022329.8|serine/threonine kinase 3
mm10_v2_chr14_+_27428790_27428874	0.133844	CCUUCAU	ENSMUST00000022450.4|D14Abb1e|ENSMUSG00000040651.8|DNA segment, Chr 14, Abbott 1 expressed
mm10_v2_chr1_+_172126750_172126779	0.131549	CCUUCAU	ENSMUST00000075895.2|Pex19|ENSMUSG00000003464.7|peroxisomal biogenesis factor 19 	ENSMUST00000111252.3|Pex19|ENSMUSG00000003464.7|peroxisomal biogenesis factor 19
mm10_v2_chr4_+_104766308_104766331	0.127004	CCUUCAU	ENSMUST00000031663.3|C8b|ENSMUSG00000029656.7|complement component 8, beta polypeptide
mm10_v2_chr3_-_116007399_116007411	0.124169	CCUUCAU	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr1_+_121431049_121431124	0.121646	CCUUCAU	ENSMUST00000036025.9|Ccdc93|ENSMUSG00000026339.12|coiled-coil domain containing 93 	ENSMUST00000112621.1|Ccdc93|ENSMUSG00000026339.12|coiled-coil domain containing 93
mm10_v2_chr7_-_73541738_73541758	0.121118	CCUUCAU	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr2_+_152226839_152226908	0.120717	CCUUCAU	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr5_+_93093428_93093457	0.118637	CCUUCAU	ENSMUST00000074733.7|Sept11|ENSMUSG00000058013.8|septin 11
mm10_v2_chr1_+_176814660_176814660	0.11592	CCUUCAU	ENSMUST00000056773.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8 	ENSMUST00000027785.8|Sdccag8|ENSMUSG00000026504.11|serologically defined colon cancer antigen 8
mm10_v2_chr13_+_49421229_49421311	0.113166	CCUUCAU	ENSMUST00000021817.8|Ippk|ENSMUSG00000021385.9|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm10_v2_chr1_-_168431695_168431750	0.112708	CCUUCAU	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr13_-_65112963_65112987	0.112258	CCUUCAU	ENSMUST00000155487.1|Hiatl1|ENSMUSG00000038212.9|hippocampus abundant transcript-like 1 	ENSMUST00000054730.8|Hiatl1|ENSMUSG00000038212.9|hippocampus abundant transcript-like 1
mm10_v2_chr1_-_10232670_10232670	0.111614	CCUUCAU	ENSMUST00000088615.4|Arfgef1|ENSMUSG00000067851.5|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 	ENSMUST00000131556.1|Arfgef1|ENSMUSG00000067851.5|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm10_v2_chr11_-_86757483_86757572	0.110386	CCUUCAU	ENSMUST00000060766.9|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc) 	ENSMUST00000103186.4|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc)
mm10_v2_chrX_+_73716577_73716618	0.106575	CCUUCAU	ENSMUST00000002084.7|Abcd1|ENSMUSG00000031378.8|ATP-binding cassette, sub-family D (ALD), member 1
mm10_v2_chr1_+_151344472_151344530	0.105337	CCUUCAU	ENSMUST00000023918.6|Ivns1abp|ENSMUSG00000023150.8|influenza virus NS1A binding protein 	ENSMUST00000097543.1|Ivns1abp|ENSMUSG00000023150.8|influenza virus NS1A binding protein 	ENSMUST00000111887.3|Ivns1abp|ENSMUSG00000023150.8|influenza virus NS1A binding protein
mm10_v2_chr12_-_118301429_118301458	0.105202	CCUUCAU	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr15_-_93275151_93275178	0.102565	CCUUCAU	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr6_+_55203381_55203459	0.102353	CCUUCAU	ENSMUST00000053094.7|Fam188b|ENSMUSG00000038022.9|family with sequence similarity 188, member B
mm10_v2_chr1_+_40266578_40266659	0.102076	CCUUCAU	ENSMUST00000114795.1|Il1r1|ENSMUSG00000026072.6|interleukin 1 receptor, type I
mm10_v2_chr11_-_102697710_102697782	0.101906	CCUUCAU	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr13_+_56702983_56703112	0.0980398	CCUUCAU	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr18_-_20114767_20114782	0.0967338	CCUUCAU	ENSMUST00000038710.5|Dsc1|ENSMUSG00000044322.6|desmocollin 1
mm10_v2_chr4_-_133339238_133339271	0.0938431	CCUUCAU	ENSMUST00000105906.1|Wdtc1|ENSMUSG00000037622.8|WD and tetratricopeptide repeats 1
mm10_v2_chr8_+_40307458_40307458	0.0929962	CCUUCAU	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr4_-_126968124_126968154	0.0923418	CCUUCAU	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr13_-_48968004_48968029	0.0911686	CCUUCAU	ENSMUST00000060805.6|Fam120a|ENSMUSG00000038014.7|family with sequence similarity 120, member A
mm10_v2_chr5_+_91074611_91074629	0.0910792	CCUUCAU	ENSMUST00000031324.4|Ereg|ENSMUSG00000029377.4|epiregulin
mm10_v2_chr2_-_35200923_35201120	0.0910169	CCUUCAU	ENSMUST00000028238.8|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family 	ENSMUST00000113025.1|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family
mm10_v2_chrX_-_162159717_162159732	0.0889461	CCUUCAU	ENSMUST00000087085.3|Nhs|ENSMUSG00000059493.7|Nance-Horan syndrome (human)
mm10_v2_chrX_-_111697069_111697127	0.0875679	CCUUCAU	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr5_+_32611171_32611245	0.0869469	CCUUCAU	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr1_+_65186727_65186750	0.08582	CCUUCAU	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr3_-_94582716_94582741	0.0857148	CCUUCAU	ENSMUST00000029783.9|Snx27|ENSMUSG00000028136.9|sorting nexin family member 27
mm10_v2_chr7_-_78578308_78578408	0.0743082	CCUUCAU	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr2_-_37647199_37647285	0.072699	CCUUCAU	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr18_+_61555258_61555290	0.0710228	CCUUCAU	ENSMUST00000165123.1|Csnk1a1|ENSMUSG00000024576.8|casein kinase 1, alpha 1
mm10_v2_chr9_+_44604844_44604921	0.0707304	CCUUCAU	ENSMUST00000170489.1|Ddx6|ENSMUSG00000032097.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm10_v2_chr17_+_65783355_65783599	0.0628263	CCUUCAU	ENSMUST00000073104.4|Ppp4r1|ENSMUSG00000061950.11|protein phosphatase 4, regulatory subunit 1 	ENSMUST00000160664.1|Ppp4r1|ENSMUSG00000061950.11|protein phosphatase 4, regulatory subunit 1 	ENSMUST00000162272.1|Ppp4r1|ENSMUSG00000061950.11|protein phosphatase 4, regulatory subunit 1
mm10_v2_chr11_+_93886157_93886219	0.0625345	CCUUCAU	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr3_-_19163011_19163085	0.0622089	CCUUCAU	ENSMUST00000029125.8|Armc1|ENSMUSG00000027599.8|armadillo repeat containing 1
mm10_v2_chr2_+_74825802_74825858	0.0615961	CCUUCAU	ENSMUST00000028511.7|Mtx2|ENSMUSG00000027099.9|metaxin 2
mm10_v2_chr1_+_178798438_178798467	0.0603723	CCUUCAU	ENSMUST00000160789.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr6_+_127015542_127015542	0.0585307	CCUUCAU	ENSMUST00000000187.5|Fgf6|ENSMUSG00000000183.5|fibroblast growth factor 6
mm10_v2_chr11_+_50025309_50025374	0.0579014	CCUUCAU	ENSMUST00000054684.7|Rnf130|ENSMUSG00000020376.10|ring finger protein 130 	ENSMUST00000102776.4|Rnf130|ENSMUSG00000020376.10|ring finger protein 130
mm10_v2_chr4_+_137594140_137594274	0.0578348	CCUUCAU	ENSMUST00000105840.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000055131.6|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000105839.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000105838.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48
mm10_v2_chr2_-_23572038_23572112	0.0570788	CCUUCAU	ENSMUST00000132484.1|Spopl|ENSMUSG00000026771.8|speckle-type POZ protein-like
mm10_v2_chr1_+_146497614_146497707	0.0556267	CCUUCAU	ENSMUST00000132847.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3 	ENSMUST00000166814.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3
mm10_v2_chr19_+_40831248_40831292	0.052912	CCUUCAU	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr11_-_85235065_85235137	0.0525769	CCUUCAU	ENSMUST00000018625.9|Appbp2|ENSMUSG00000018481.9|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm10_v2_chr12_-_75177325_75177359	0.0513934	CCUUCAU	ENSMUST00000042299.2|Kcnh5|ENSMUSG00000034402.2|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm10_v2_chr5_+_121397936_121398004	0.0487667	CCUUCAU	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr15_+_82274935_82275034	0.0481824	CCUUCAU	ENSMUST00000023095.6|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr15_+_12117813_12117846	0.0479033	CCUUCAU	ENSMUST00000122941.1|Zfr|ENSMUSG00000022201.9|zinc finger RNA binding protein
mm10_v2_chr14_-_69732510_69732581	0.0397858	CCUUCAU	ENSMUST00000036381.8|Chmp7|ENSMUSG00000034190.8|charged multivesicular body protein 7
mm10_v2_chr11_+_83942062_83942105	0.0395537	CCUUCAU	ENSMUST00000049257.7|Ddx52|ENSMUSG00000020677.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
mm10_v2_chr2_+_79707780_79707927	0.0395531	CCUUCAU	ENSMUST00000090760.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000040863.4|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000111780.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm10_v2_chr14_-_124677089_124677127	0.0353689	CCUUCAU	ENSMUST00000095529.3|Fgf14|ENSMUSG00000025551.7|fibroblast growth factor 14
mm10_v2_chr6_-_137649211_137649294	0.0327527	CCUUCAU	ENSMUST00000134630.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000058210.6|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000111878.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr2_-_73312701_73312724	0.0325736	CCUUCAU	ENSMUST00000058615.9|Cir1|ENSMUSG00000041777.11|corepressor interacting with RBPJ, 1
mm10_v2_chr16_+_4639941_4639978	0.0324882	CCUUCAU	ENSMUST00000038770.3|Vasn|ENSMUSG00000039646.5|vasorin
mm10_v2_chr1_-_21079162_21079243	0.0284388	CCUUCAU	ENSMUST00000037998.4|Tram2|ENSMUSG00000041779.4|translocating chain-associating membrane protein 2
mm10_v2_chr14_+_63943666_63943687	0.0236091	CCUUCAU	ENSMUST00000079652.5|Sox7|ENSMUSG00000063060.5|SRY-box containing gene 7
mm10_v2_chr8_-_18741542_18741566	0.0230136	CCUUCAU	ENSMUST00000033846.6|Angpt2|ENSMUSG00000031465.6|angiopoietin 2
mm10_v2_chr9_-_16378231_16378231	0.0225079	CCUUCAU	ENSMUST00000082170.5|Fat3|ENSMUSG00000074505.4|FAT tumor suppressor homolog 3 (Drosophila)
mm10_v2_chr2_-_104494400_104494463	0.0223796	CCUUCAU	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr16_-_18289199_18289260	0.0212171	CCUUCAU	ENSMUST00000009321.4|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8 	ENSMUST00000115633.1|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8
mm10_v2_chr2_+_168081004_168081035	0.020638	CCUUCAU	ENSMUST00000052125.6|Pard6b|ENSMUSG00000044641.7|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm10_v2_chr9_-_42472198_42472265	0.0195815	CCUUCAU	ENSMUST00000128959.1|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like 	ENSMUST00000066148.5|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like 	ENSMUST00000138506.1|Tbcel|ENSMUSG00000037287.8|tubulin folding cofactor E-like
mm10_v2_chr16_-_4997782_4997852	0.0193182	CCUUCAU	ENSMUST00000170323.2|Sept12|ENSMUSG00000022542.6|septin 12
mm10_v2_chr1_+_42952872_42952983	0.0192793	CCUUCAU	ENSMUST00000179766.1|Gpr45|ENSMUSG00000041907.8|G protein-coupled receptor 45
mm10_v2_chr10_-_63023881_63023907	0.0176744	CCUUCAU	ENSMUST00000118898.1|Hnrnph3|ENSMUSG00000020069.10|heterogeneous nuclear ribonucleoprotein H3 	ENSMUST00000020263.7|Hnrnph3|ENSMUSG00000020069.10|heterogeneous nuclear ribonucleoprotein H3
mm10_v2_chr13_-_98891036_98891063	0.0172694	CCUUCAU	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr10_+_95515116_95515162	0.0164679	CCUUCAU	ENSMUST00000099329.3|Ube2n|ENSMUSG00000074781.4|ubiquitin-conjugating enzyme E2N
mm10_v2_chr11_-_106788486_106788532	0.0164504	CCUUCAU	ENSMUST00000021062.5|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr7_-_128461630_128461672	0.016401	CCUUCAU	ENSMUST00000106226.2|Tial1|ENSMUSG00000030846.9|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm10_v2_chr9_+_72532214_72532271	0.0137965	CCUUCAU	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr5_-_65492984_65493051	0.0133035	CCUUCAU	ENSMUST00000139122.1|Smim14|ENSMUSG00000037822.6|small integral membrane protein 14
mm10_v2_chr6_+_86849488_86849628	0.0128812	CCUUCAU	ENSMUST00000089519.6|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1 	ENSMUST00000113668.1|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1
mm10_v2_chr2_-_70825726_70825820	0.010552	CCUUCAU	ENSMUST00000038584.8|Tlk1|ENSMUSG00000041997.10|tousled-like kinase 1
mm10_v2_chr16_+_32914094_32914142	0.00849646	CCUUCAU	ENSMUST00000023491.6|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000170899.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000171118.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000170201.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000165616.1|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3 	ENSMUST00000135193.2|Lrch3|ENSMUSG00000022801.7|leucine-rich repeats and calponin homology (CH) domain containing 3
mm10_v2_chr8_-_29219338_29219338	0.00848832	CCUUCAU	ENSMUST00000168630.2|Unc5d|ENSMUSG00000063626.5|unc-5 homolog D (C. elegans)
mm10_v2_chr17_+_78937124_78937183	0.00831643	CCUUCAU	ENSMUST00000024887.4|Ndufaf7|ENSMUSG00000024082.4|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7
mm10_v2_chr19_+_47579602_47579681	0.00573516	CCUUCAU	ENSMUST00000026043.5|Slk|ENSMUSG00000025060.8|STE20-like kinase
mm10_v2_chr11_-_104550460_104550560	0.00463683	CCUUCAU	ENSMUST00000106961.1|Cdc27|ENSMUSG00000020687.7|cell division cycle 27 	ENSMUST00000093923.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr11_+_17159263_17159357	0.00432464	CCUUCAU	ENSMUST00000102880.4|Ppp3r1|ENSMUSG00000033953.10|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm10_v2_chr2_-_84425258_84425411	0.00271531	CCUUCAU	ENSMUST00000074262.2|Calcrl|ENSMUSG00000059588.7|calcitonin receptor-like
mm10_v2_chr2_+_14174513_14174546	0.00151379	CCUUCAU	ENSMUST00000077517.7|Tmem236|ENSMUSG00000061531.7|transmembrane protein 236
mm10_v2_chr9_+_23223076_23223076	0.000486	CCUUCAU	ENSMUST00000071982.5|Bmper|ENSMUSG00000031963.7|BMP-binding endothelial regulator
