mm10_v2_chr10_-_53379816_53379858	0.630543	CCAGUGU	ENSMUST00000095691.5|Cep85l|ENSMUSG00000038594.8|centrosomal protein 85-like
mm10_v2_chr11_-_120660565_120660606	0.58988	CCAGUGU	ENSMUST00000106177.1|Notum|ENSMUSG00000042988.4|notum pectinacetylesterase homolog (Drosophila)
mm10_v2_chr15_-_55906917_55906957	0.585082	CCAGUGU	ENSMUST00000039769.5|Sntb1|ENSMUSG00000060429.5|syntrophin, basic 1
mm10_v2_chr2_-_12301914_12301922	0.482323	CCAGUGU	ENSMUST00000028106.4|Itga8|ENSMUSG00000026768.4|integrin alpha 8
mm10_v2_chr12_+_9574437_9574448	0.461146	CCAGUGU	ENSMUST00000057021.7|Osr1|ENSMUSG00000048387.7|odd-skipped related 1 (Drosophila)
mm10_v2_chr2_-_53191214_53191284	0.435638	CCAGUGU	ENSMUST00000076313.6|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast) 	ENSMUST00000125243.1|Prpf40a|ENSMUSG00000061136.7|PRP40 pre-mRNA processing factor 40 homolog A (yeast)
mm10_v2_chr7_+_110018301_110018425	0.420971	CCAGUGU	ENSMUST00000084731.3|Ipo7|ENSMUSG00000066232.3|importin 7
mm10_v2_chr4_-_53159885_53159900	0.417728	CCAGUGU	ENSMUST00000030010.3|Abca1|ENSMUSG00000015243.4|ATP-binding cassette, sub-family A (ABC1), member 1
mm10_v2_chr10_+_58446845_58446928	0.413386	CCAGUGU	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr1_+_194619815_194619833	0.376731	CCAGUGU	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr17_-_46487641_46487682	0.371096	CCAGUGU	ENSMUST00000047034.8|Ttbk1|ENSMUSG00000015599.8|tau tubulin kinase 1
mm10_v2_chr5_+_16553488_16553550	0.369611	CCAGUGU	ENSMUST00000030683.3|Hgf|ENSMUSG00000028864.3|hepatocyte growth factor
mm10_v2_chr9_-_44234014_44234046	0.364089	CCAGUGU	ENSMUST00000037644.6|Cbl|ENSMUSG00000034342.8|Casitas B-lineage lymphoma
mm10_v2_chr4_+_137862237_137862249	0.361797	CCAGUGU	ENSMUST00000102518.3|Ece1|ENSMUSG00000057530.8|endothelin converting enzyme 1
mm10_v2_chr10_-_81747503_81747503	0.334008	CCAGUGU	ENSMUST00000105316.2|Gm3055|ENSMUSG00000094622.1|predicted gene 3055
mm10_v2_chr7_+_89404356_89404367	0.322882	CCAGUGU	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr18_-_10181792_10181792	0.317172	CCAGUGU	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr2_+_109890846_109890882	0.317043	CCAGUGU	ENSMUST00000028583.7|Lin7c|ENSMUSG00000027162.7|lin-7 homolog C (C. elegans)
mm10_v2_chr15_-_86033777_86033777	0.317009	CCAGUGU	ENSMUST00000016172.7|Celsr1|ENSMUSG00000016028.9|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)
mm10_v2_chr5_-_123684289_123684379	0.303971	CCAGUGU	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr14_+_14012491_14012693	0.303812	CCAGUGU	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chrX_+_23693043_23693131	0.294472	CCAGUGU	ENSMUST00000035766.6|Wdr44|ENSMUSG00000036769.8|WD repeat domain 44 	ENSMUST00000101670.2|Wdr44|ENSMUSG00000036769.8|WD repeat domain 44
mm10_v2_chr19_+_44931119_44931172	0.287385	CCAGUGU	ENSMUST00000096053.3|Fam178a|ENSMUSG00000036097.7|family with sequence similarity 178, member A
mm10_v2_chr1_-_150993051_150993155	0.27951	CCAGUGU	ENSMUST00000074783.5|Hmcn1|ENSMUSG00000066842.12|hemicentin 1 	ENSMUST00000137197.2|Hmcn1|ENSMUSG00000066842.12|hemicentin 1
mm10_v2_chr10_+_108162358_108162408	0.278454	CCAGUGU	ENSMUST00000070663.5|Ppp1r12a|ENSMUSG00000019907.9|protein phosphatase 1, regulatory (inhibitor) subunit 12A
mm10_v2_chr19_-_10240689_10240751	0.27099	CCAGUGU	ENSMUST00000088013.5|Myrf|ENSMUSG00000036098.9|myelin regulatory factor
mm10_v2_chr7_+_66839752_66839813	0.262443	CCAGUGU	ENSMUST00000107478.1|Adamts17|ENSMUSG00000058145.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm10_v2_chr12_-_69681795_69681869	0.25388	CCAGUGU	ENSMUST00000183277.1|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila) 	ENSMUST00000035773.7|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila)
mm10_v2_chr12_+_73901370_73901391	0.249426	CCAGUGU	ENSMUST00000110461.1|Hif1a|ENSMUSG00000021109.7|hypoxia inducible factor 1, alpha subunit
mm10_v2_chr2_+_91457501_91457549	0.237707	CCAGUGU	ENSMUST00000028689.3|Lrp4|ENSMUSG00000027253.9|low density lipoprotein receptor-related protein 4
mm10_v2_chr8_-_60983215_60983319	0.233677	CCAGUGU	ENSMUST00000004430.7|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000110301.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3 	ENSMUST00000093490.2|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr13_-_58113592_58113620	0.228728	CCAGUGU	ENSMUST00000160860.1|Klhl3|ENSMUSG00000014164.8|kelch-like 3
mm10_v2_chr17_+_26715644_26715724	0.227376	CCAGUGU	ENSMUST00000062519.7|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000144221.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000142539.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor 	ENSMUST00000151681.1|Crebrf|ENSMUSG00000048249.8|CREB3 regulatory factor
mm10_v2_chr2_+_156196642_156196775	0.217127	CCAGUGU	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr12_+_78748947_78748971	0.21649	CCAGUGU	ENSMUST00000082024.5|Mpp5|ENSMUSG00000021112.8|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm10_v2_chr8_-_68735058_68735147	0.21611	CCAGUGU	ENSMUST00000136060.1|Csgalnact1|ENSMUSG00000036356.8|chondroitin sulfate N-acetylgalactosaminyltransferase 1 	ENSMUST00000130214.1|Csgalnact1|ENSMUSG00000036356.8|chondroitin sulfate N-acetylgalactosaminyltransferase 1 	ENSMUST00000078350.6|Csgalnact1|ENSMUSG00000036356.8|chondroitin sulfate N-acetylgalactosaminyltransferase 1
mm10_v2_chr10_+_19934472_19934526	0.215422	CCAGUGU	ENSMUST00000095806.3|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5 	ENSMUST00000120259.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr1_-_186705980_186705999	0.21252	CCAGUGU	ENSMUST00000045288.8|Tgfb2|ENSMUSG00000039239.9|transforming growth factor, beta 2
mm10_v2_chr8_-_36613937_36613948	0.21235	CCAGUGU	ENSMUST00000033923.7|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr5_-_51553896_51553921	0.211076	CCAGUGU	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr3_-_69127098_69127113	0.208375	CCAGUGU	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr6_+_4903298_4903346	0.206464	CCAGUGU	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr1_-_59237093_59237256	0.203407	CCAGUGU	ENSMUST00000163058.1|Als2|ENSMUSG00000026024.8|amyotrophic lateral sclerosis 2 (juvenile) 	ENSMUST00000027178.6|Als2|ENSMUSG00000026024.8|amyotrophic lateral sclerosis 2 (juvenile)
mm10_v2_chr19_-_44069736_44069787	0.201899	CCAGUGU	ENSMUST00000172041.1|Erlin1|ENSMUSG00000025198.10|ER lipid raft associated 1 	ENSMUST00000071698.6|Erlin1|ENSMUSG00000025198.10|ER lipid raft associated 1 	ENSMUST00000112028.3|Erlin1|ENSMUSG00000025198.10|ER lipid raft associated 1
mm10_v2_chr11_-_23497867_23497962	0.20183	CCAGUGU	ENSMUST00000128559.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000147157.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2 	ENSMUST00000109539.1|Ahsa2|ENSMUSG00000020288.7|AHA1, activator of heat shock protein ATPase 2
mm10_v2_chr5_-_131616599_131616611	0.194798	CCAGUGU	ENSMUST00000161804.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr2_+_34772089_34772095	0.190363	CCAGUGU	ENSMUST00000028222.6|Hspa5|ENSMUSG00000026864.7|heat shock protein 5 	ENSMUST00000100171.2|Hspa5|ENSMUSG00000026864.7|heat shock protein 5
mm10_v2_chr7_+_97579868_97579901	0.187902	CCAGUGU	ENSMUST00000042399.7|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1 	ENSMUST00000107153.1|Rsf1|ENSMUSG00000035623.8|remodeling and spacing factor 1
mm10_v2_chr2_-_177324307_177324307	0.187726	CCAGUGU	ENSMUST00000108959.2|Gm14412|ENSMUSG00000078868.3|predicted gene 14412
mm10_v2_chr4_+_108719649_108719649	0.18341	CCAGUGU	ENSMUST00000178992.1|3110021N24Rik|ENSMUSG00000094958.1|RIKEN cDNA 3110021N24 gene
mm10_v2_chr10_-_81910899_81910899	0.179636	CCAGUGU	ENSMUST00000076281.5|Zfp781|ENSMUSG00000096718.1|zinc finger protein 781
mm10_v2_chr5_-_76304474_76304548	0.17001	CCAGUGU	ENSMUST00000075159.1|Clock|ENSMUSG00000029238.8|circadian locomotor output cycles kaput
mm10_v2_chr2_-_20968881_20968957	0.169902	CCAGUGU	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr2_+_60209887_60210073	0.168811	CCAGUGU	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr8_+_35587780_35587825	0.164949	CCAGUGU	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr1_-_78197112_78197134	0.162566	CCAGUGU	ENSMUST00000087086.6|Pax3|ENSMUSG00000004872.9|paired box gene 3
mm10_v2_chr1_-_161876656_161876682	0.15926	CCAGUGU	ENSMUST00000048377.5|Suco|ENSMUSG00000040297.7|SUN domain containing ossification factor
mm10_v2_chr14_+_26579535_26579612	0.158352	CCAGUGU	ENSMUST00000037585.7|Dennd6a|ENSMUSG00000040818.7|DENN/MADD domain containing 6A
mm10_v2_chr8_+_71922810_71922852	0.156323	CCAGUGU	ENSMUST00000119003.1|Zfp617|ENSMUSG00000066880.9|zinc finger protein 617
mm10_v2_chr16_+_38089001_38089064	0.155414	CCAGUGU	ENSMUST00000023507.6|Gsk3b|ENSMUSG00000022812.7|glycogen synthase kinase 3 beta
mm10_v2_chr7_-_16614937_16615021	0.153585	CCAGUGU	ENSMUST00000171937.1|Grlf1|ENSMUSG00000058230.6|glucocorticoid receptor DNA binding factor 1 	ENSMUST00000075845.4|Grlf1|ENSMUSG00000058230.6|glucocorticoid receptor DNA binding factor 1
mm10_v2_chr6_-_18030435_18030585	0.148661	CCAGUGU	ENSMUST00000010941.2|Wnt2|ENSMUSG00000010797.2|wingless-related MMTV integration site 2
mm10_v2_chr2_+_3713449_3713474	0.145129	CCAGUGU	ENSMUST00000027965.4|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr10_-_62486772_62486805	0.138996	CCAGUGU	ENSMUST00000105447.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr11_-_62457289_62457332	0.13683	CCAGUGU	ENSMUST00000069456.4|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1 	ENSMUST00000018645.6|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr10_-_121476248_121476275	0.136252	CCAGUGU	ENSMUST00000026902.7|Rassf3|ENSMUSG00000025795.7|Ras association (RalGDS/AF-6) domain family member 3
mm10_v2_chr8_-_73353477_73353551	0.134029	CCAGUGU	ENSMUST00000119826.1|Large|ENSMUSG00000004383.11|like-glycosyltransferase
mm10_v2_chr8_+_109778554_109778558	0.129136	CCAGUGU	ENSMUST00000093157.6|Ap1g1|ENSMUSG00000031731.10|adaptor protein complex AP-1, gamma 1 subunit
mm10_v2_chr11_-_88851462_88851522	0.12836	CCAGUGU	ENSMUST00000107903.1|Akap1|ENSMUSG00000018428.9|A kinase (PRKA) anchor protein 1
mm10_v2_chr9_+_32696005_32696121	0.123016	CCAGUGU	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr13_-_62520451_62520544	0.122962	CCAGUGU	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chr15_+_79108911_79108982	0.12193	CCAGUGU	ENSMUST00000040320.8|Micall1|ENSMUSG00000033039.9|microtubule associated monooxygenase, calponin and LIM domain containing -like 1
mm10_v2_chr3_-_116712644_116712655	0.120987	CCAGUGU	ENSMUST00000029569.2|Slc35a3|ENSMUSG00000027957.7|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm10_v2_chr15_-_77842133_77842175	0.1194	CCAGUGU	ENSMUST00000016771.6|Myh9|ENSMUSG00000022443.10|myosin, heavy polypeptide 9, non-muscle
mm10_v2_chr3_+_121953213_121953295	0.118451	CCAGUGU	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr1_-_172082757_172082795	0.118066	CCAGUGU	ENSMUST00000003550.4|Ncstn|ENSMUSG00000003458.6|nicastrin
mm10_v2_chr7_+_100472985_100472998	0.117752	CCAGUGU	ENSMUST00000032958.7|Ucp3|ENSMUSG00000032942.8|uncoupling protein 3 (mitochondrial, proton carrier) 	ENSMUST00000107059.1|Ucp3|ENSMUSG00000032942.8|uncoupling protein 3 (mitochondrial, proton carrier)
mm10_v2_chr11_-_20741447_20741524	0.116376	CCAGUGU	ENSMUST00000177543.1|Aftph|ENSMUSG00000049659.9|aftiphilin
mm10_v2_chr2_-_103797617_103797662	0.114072	CCAGUGU	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr16_+_44173239_44173270	0.113519	CCAGUGU	ENSMUST00000119746.1|Gm608|ENSMUSG00000068284.8|predicted gene 608
mm10_v2_chr12_-_101028983_101029042	0.112953	CCAGUGU	ENSMUST00000068411.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C 	ENSMUST00000085096.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C
mm10_v2_chr17_-_45686214_45686265	0.112298	CCAGUGU	ENSMUST00000113523.2|Tmem63b|ENSMUSG00000036026.9|transmembrane protein 63b
mm10_v2_chr19_-_47464406_47464450	0.111278	CCAGUGU	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr12_-_51829525_51829553	0.110476	CCAGUGU	ENSMUST00000179265.1|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1 	ENSMUST00000042052.8|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1
mm10_v2_chr1_-_119837613_119837673	0.11031	CCAGUGU	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr12_+_111166349_111166397	0.108057	CCAGUGU	ENSMUST00000117269.1|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr11_-_104442232_104442291	0.106239	CCAGUGU	ENSMUST00000106977.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1 	ENSMUST00000106972.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1
mm10_v2_chr17_-_46031813_46031863	0.105191	CCAGUGU	ENSMUST00000024747.7|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A
mm10_v2_chr17_+_78200240_78200258	0.104469	CCAGUGU	ENSMUST00000112498.2|Crim1|ENSMUSG00000024074.7|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm10_v2_chr3_-_65958236_65958252	0.10383	CCAGUGU	ENSMUST00000029416.7|Ccnl1|ENSMUSG00000027829.9|cyclin L1
mm10_v2_chr6_+_65042575_65042667	0.103611	CCAGUGU	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr13_+_62129894_62129923	0.10272	CCAGUGU	ENSMUST00000099449.3|Zfp808|ENSMUSG00000074867.3|zinc finger protein 80
mm10_v2_chr2_+_48814109_48814173	0.101851	CCAGUGU	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chr8_-_90348343_90348386	0.101118	CCAGUGU	ENSMUST00000109621.3|Tox3|ENSMUSG00000043668.7|TOX high mobility group box family member 3
mm10_v2_chr13_+_109903089_109903110	0.0991567	CCAGUGU	ENSMUST00000120664.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr18_+_36281069_36281151	0.097185	CCAGUGU	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr12_-_55821157_55821195	0.0947006	CCAGUGU	ENSMUST00000110687.1|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1 	ENSMUST00000085385.5|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1
mm10_v2_chr6_-_121003099_121003153	0.0930404	CCAGUGU	ENSMUST00000098457.2|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENSMUST00000150503.1|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm10_v2_chr5_+_114130386_114130444	0.0926231	CCAGUGU	ENSMUST00000031587.6|Ung|ENSMUSG00000029591.8|uracil DNA glycosylase
mm10_v2_chr4_-_149307506_149307703	0.0910495	CCAGUGU	ENSMUST00000055647.8|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000030806.5|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000060537.6|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B
mm10_v2_chr14_-_100149764_100149764	0.0910489	CCAGUGU	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr1_-_93478785_93478823	0.0906868	CCAGUGU	ENSMUST00000170883.1|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chr11_-_97187872_97187926	0.0905183	CCAGUGU	ENSMUST00000001479.4|Kpnb1|ENSMUSG00000001440.5|karyopherin (importin) beta 1
mm10_v2_chr15_+_39006272_39006365	0.0896435	CCAGUGU	ENSMUST00000179165.1|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila) 	ENSMUST00000022906.7|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila)
mm10_v2_chr6_-_115994953_115995010	0.0885255	CCAGUGU	ENSMUST00000015511.8|Plxnd1|ENSMUSG00000030123.9|plexin D1
mm10_v2_chr6_+_72347301_72347379	0.0858943	CCAGUGU	ENSMUST00000077783.3|0610030E20Rik|ENSMUSG00000058706.3|RIKEN cDNA 0610030E20 gene
mm10_v2_chr17_+_55986494_55986531	0.0848149	CCAGUGU	ENSMUST00000011733.8|Fsd1|ENSMUSG00000011589.8|fibronectin type 3 and SPRY domain-containing protein
mm10_v2_chr19_+_8898090_8898122	0.0840894	CCAGUGU	ENSMUST00000096246.3|Ganab|ENSMUSG00000071650.5|alpha glucosidase 2 alpha neutral subunit
mm10_v2_chr9_+_43744399_43744576	0.0837086	CCAGUGU	ENSMUST00000034510.7|Pvrl1|ENSMUSG00000032012.7|poliovirus receptor-related 1
mm10_v2_chr13_+_40859768_40859822	0.0833573	CCAGUGU	ENSMUST00000110191.2|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr10_-_71159676_71159708	0.0821311	CCAGUGU	ENSMUST00000014473.5|Bicc1|ENSMUSG00000014329.8|bicaudal C homolog 1 (Drosophila) 	ENSMUST00000143791.1|Bicc1|ENSMUSG00000014329.8|bicaudal C homolog 1 (Drosophila)
mm10_v2_chrX_+_13280970_13281031	0.080124	CCAGUGU	ENSMUST00000000804.6|Ddx3x|ENSMUSG00000000787.6|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm10_v2_chrX_-_136868537_136868755	0.0798918	CCAGUGU	ENSMUST00000058814.6|Rab9b|ENSMUSG00000043463.6|RAB9B, member RAS oncogene family
mm10_v2_chr2_+_175275125_175275125	0.0797413	CCAGUGU	ENSMUST00000109051.1|Gm14440|ENSMUSG00000078901.2|predicted gene 14440
mm10_v2_chr9_+_57589442_57589482	0.0778829	CCAGUGU	ENSMUST00000053230.6|Ulk3|ENSMUSG00000032308.8|unc-51-like kinase 3
mm10_v2_chr19_-_41263931_41264008	0.0761427	CCAGUGU	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr3_+_34020075_34020082	0.0761306	CCAGUGU	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr19_-_60581013_60581025	0.0742614	CCAGUGU	ENSMUST00000111460.3|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000081790.7|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000166712.1|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1
mm10_v2_chr6_-_31563978_31563989	0.072731	CCAGUGU	ENSMUST00000026698.7|Podxl|ENSMUSG00000025608.9|podocalyxin-like
mm10_v2_chr1_-_143702832_143702893	0.0688282	CCAGUGU	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chr4_-_121098190_121098250	0.0684649	CCAGUGU	ENSMUST00000058754.2|Zmpste24|ENSMUSG00000043207.4|zinc metallopeptidase, STE24
mm10_v2_chr6_-_148831448_148831494	0.0680719	CCAGUGU	ENSMUST00000048418.7|Ipo8|ENSMUSG00000040029.8|importin 8
mm10_v2_chr11_-_59472464_59472488	0.0659669	CCAGUGU	ENSMUST00000057799.7|Zfp867|ENSMUSG00000054519.8|zinc finger protein 867
mm10_v2_chr19_-_58860975_58860997	0.0649517	CCAGUGU	ENSMUST00000066285.4|Hspa12a|ENSMUSG00000025092.6|heat shock protein 12A
mm10_v2_chr13_-_62777089_62777089	0.0642333	CCAGUGU	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr11_-_90390895_90390926	0.0615195	CCAGUGU	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr9_+_44604844_44604921	0.0574783	CCAGUGU	ENSMUST00000170489.1|Ddx6|ENSMUSG00000032097.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm10_v2_chrY_-_1286563_1286615	0.0554399	CCAGUGU	ENSMUST00000091190.5|Ddx3y|ENSMUSG00000069045.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm10_v2_chr14_+_56887795_56887795	0.0546496	CCAGUGU	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr11_+_62281457_62281495	0.0538507	CCAGUGU	ENSMUST00000101075.4|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19 	ENSMUST00000050646.6|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19
mm10_v2_chr14_-_65098031_65098106	0.0526975	CCAGUGU	ENSMUST00000022550.7|Extl3|ENSMUSG00000021978.8|exostoses (multiple)-like 3
mm10_v2_chr16_+_14361552_14361601	0.0519151	CCAGUGU	ENSMUST00000100167.3|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000154748.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENSMUST00000134776.1|Abcc1|ENSMUSG00000023088.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm10_v2_chr6_+_122308684_122308720	0.0511083	CCAGUGU	ENSMUST00000007602.8|M6pr|ENSMUSG00000007458.8|mannose-6-phosphate receptor, cation dependent 	ENSMUST00000112610.1|M6pr|ENSMUSG00000007458.8|mannose-6-phosphate receptor, cation dependent
mm10_v2_chr9_-_20815048_20815069	0.0509973	CCAGUGU	ENSMUST00000004201.7|Col5a3|ENSMUSG00000004098.7|collagen, type V, alpha 3
mm10_v2_chr11_-_85235065_85235137	0.0495195	CCAGUGU	ENSMUST00000018625.9|Appbp2|ENSMUSG00000018481.9|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm10_v2_chr10_+_128377086_128377155	0.0493788	CCAGUGU	ENSMUST00000014642.3|Ankrd52|ENSMUSG00000014498.3|ankyrin repeat domain 52
mm10_v2_chr4_-_34614886_34614944	0.0487904	CCAGUGU	ENSMUST00000140334.1|Orc3|ENSMUSG00000040044.5|origin recognition complex, subunit 3 	ENSMUST00000108142.1|Orc3|ENSMUSG00000040044.5|origin recognition complex, subunit 3 	ENSMUST00000048706.3|Orc3|ENSMUSG00000040044.5|origin recognition complex, subunit 3
mm10_v2_chr4_-_134287215_134287258	0.0480073	CCAGUGU	ENSMUST00000145006.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105877.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000127857.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105876.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like
mm10_v2_chr14_+_118137101_118137178	0.0475951	CCAGUGU	ENSMUST00000022728.2|Gpr180|ENSMUSG00000022131.2|G protein-coupled receptor 180
mm10_v2_chr2_+_152226839_152226908	0.0457601	CCAGUGU	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr2_-_181592733_181592803	0.0439248	CCAGUGU	ENSMUST00000108789.2|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B 	ENSMUST00000153998.1|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B
mm10_v2_chr8_-_22706507_22706589	0.0430888	CCAGUGU	ENSMUST00000033939.6|Ikbkb|ENSMUSG00000031537.9|inhibitor of kappaB kinase beta 	ENSMUST00000063401.3|Ikbkb|ENSMUSG00000031537.9|inhibitor of kappaB kinase beta
mm10_v2_chr14_-_64949838_64949886	0.0412842	CCAGUGU	ENSMUST00000067843.3|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176489.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175905.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000022544.7|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175744.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176128.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1
mm10_v2_chr16_+_33380765_33380787	0.0411244	CCAGUGU	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr13_-_62607499_62607499	0.0403452	CCAGUGU	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr5_+_43868802_43868866	0.039594	CCAGUGU	ENSMUST00000030964.4|Cd38|ENSMUSG00000029084.4|CD38 antigen
mm10_v2_chr18_+_82910863_82910885	0.0393104	CCAGUGU	ENSMUST00000171238.1|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr1_+_12692430_12692485	0.0389366	CCAGUGU	ENSMUST00000180062.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1 	ENSMUST00000177608.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1
mm10_v2_chr11_+_88047693_88047727	0.0382155	CCAGUGU	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr2_-_48949206_48949276	0.0381923	CCAGUGU	ENSMUST00000090976.3|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000149679.1|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000028098.4|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4
mm10_v2_chr5_+_47984793_47984811	0.0371869	CCAGUGU	ENSMUST00000170109.2|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila) 	ENSMUST00000174421.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila) 	ENSMUST00000173702.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila) 	ENSMUST00000173107.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila)
mm10_v2_chr2_-_176927809_176927809	0.0367194	CCAGUGU	ENSMUST00000099007.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr5_+_139200631_139200685	0.0358992	CCAGUGU	ENSMUST00000058716.7|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1 	ENSMUST00000110883.2|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1 	ENSMUST00000110884.2|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1 	ENSMUST00000100517.3|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1 	ENSMUST00000127045.1|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1 	ENSMUST00000143562.1|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1 	ENSMUST00000078690.6|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1 	ENSMUST00000146715.1|Sun1|ENSMUSG00000036817.8|Sad1 and UNC84 domain containing 1
mm10_v2_chr12_-_59219725_59219776	0.0352883	CCAGUGU	ENSMUST00000043204.7|Fbxo33|ENSMUSG00000035329.7|F-box protein 33
mm10_v2_chr19_+_41482632_41482688	0.0341151	CCAGUGU	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr6_+_17307632_17307651	0.0330904	CCAGUGU	ENSMUST00000115453.1|Cav1|ENSMUSG00000007655.10|caveolin 1, caveolae protein
mm10_v2_chr14_+_46882854_46882973	0.0325787	CCAGUGU	ENSMUST00000022386.8|Samd4|ENSMUSG00000021838.10|sterile alpha motif domain containing 4 	ENSMUST00000100672.3|Samd4|ENSMUSG00000021838.10|sterile alpha motif domain containing 4
mm10_v2_chrX_+_134059137_134059215	0.0322395	CCAGUGU	ENSMUST00000113287.1|Cstf2|ENSMUSG00000031256.5|cleavage stimulation factor, 3' pre-RNA subunit 2 	ENSMUST00000033609.2|Cstf2|ENSMUSG00000031256.5|cleavage stimulation factor, 3' pre-RNA subunit 2 	ENSMUST00000113286.1|Cstf2|ENSMUSG00000031256.5|cleavage stimulation factor, 3' pre-RNA subunit 2
mm10_v2_chr5_+_145204523_145204668	0.0312241	CCAGUGU	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr7_-_34313531_34313568	0.0309473	CCAGUGU	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr2_-_93334467_93334515	0.0308194	CCAGUGU	ENSMUST00000111265.2|Tspan18|ENSMUSG00000027217.7|tetraspanin 18
mm10_v2_chr13_-_67484225_67484269	0.0304869	CCAGUGU	ENSMUST00000019572.7|Zfp874b|ENSMUSG00000059839.8|zinc finger protein 874b
mm10_v2_chr11_-_78697370_78697475	0.0297365	CCAGUGU	ENSMUST00000142739.1|Nlk|ENSMUSG00000017376.9|nemo like kinase
mm10_v2_chr5_+_122643878_122644009	0.0282528	CCAGUGU	ENSMUST00000100737.3|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000121489.1|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000031425.8|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000086247.5|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7
mm10_v2_chr3_+_89164790_89164863	0.0281401	CCAGUGU	ENSMUST00000121212.2|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000152205.1|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000090927.5|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000148265.1|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000121931.1|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2
mm10_v2_chr2_+_14604252_14604306	0.0274339	CCAGUGU	ENSMUST00000114723.2|Cacnb2|ENSMUSG00000057914.9|calcium channel, voltage-dependent, beta 2 subunit
mm10_v2_chr3_+_117575227_117575239	0.0271829	CCAGUGU	ENSMUST00000106473.2|4833424O15Rik|ENSMUSG00000033342.7|RIKEN cDNA 4833424O15 gene
mm10_v2_chr2_-_132880847_132880907	0.0266512	CCAGUGU	ENSMUST00000049787.2|Lrrn4|ENSMUSG00000043110.2|leucine rich repeat neuronal 4
mm10_v2_chrX_+_85574018_85574150	0.0249984	CCAGUGU	ENSMUST00000048250.3|Tab3|ENSMUSG00000035476.3|TGF-beta activated kinase 1/MAP3K7 binding protein 3 	ENSMUST00000137438.1|Tab3|ENSMUSG00000035476.3|TGF-beta activated kinase 1/MAP3K7 binding protein 3 	ENSMUST00000146063.1|Tab3|ENSMUSG00000035476.3|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm10_v2_chr7_-_4970961_4970961	0.0244744	CCAGUGU	ENSMUST00000144863.1|Gm1078|ENSMUSG00000085272.1|predicted gene 1078
mm10_v2_chr2_+_176226569_176226573	0.0244122	CCAGUGU	ENSMUST00000099009.2|2210418O10Rik|ENSMUSG00000078894.3|RIKEN cDNA 2210418O10 gene 	ENSMUST00000136719.1|2210418O10Rik|ENSMUSG00000078894.3|RIKEN cDNA 2210418O10 gene
mm10_v2_chr2_-_12419456_12419474	0.0240976	CCAGUGU	ENSMUST00000154899.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A 	ENSMUST00000028105.6|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chrX_+_100767719_100767749	0.0233723	CCAGUGU	ENSMUST00000000901.6|Dlg3|ENSMUSG00000000881.6|discs, large homolog 3 (Drosophila) 	ENSMUST00000113736.2|Dlg3|ENSMUSG00000000881.6|discs, large homolog 3 (Drosophila) 	ENSMUST00000087984.4|Dlg3|ENSMUSG00000000881.6|discs, large homolog 3 (Drosophila)
mm10_v2_chr10_+_52022502_52022534	0.0228996	CCAGUGU	ENSMUST00000163017.1|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila) 	ENSMUST00000058347.4|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila)
mm10_v2_chr16_-_32868325_32868368	0.0214553	CCAGUGU	ENSMUST00000089684.3|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene 	ENSMUST00000040986.8|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene 	ENSMUST00000115105.2|1700021K19Rik|ENSMUSG00000035629.11|RIKEN cDNA 1700021K19 gene
mm10_v2_chr2_+_57237651_57237729	0.0203594	CCAGUGU	ENSMUST00000169687.1|Gpd2|ENSMUSG00000026827.6|glycerol phosphate dehydrogenase 2, mitochondrial
mm10_v2_chr7_+_75455534_75455629	0.0200956	CCAGUGU	ENSMUST00000147005.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13 	ENSMUST00000166315.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr10_+_43479140_43479194	0.0200031	CCAGUGU	ENSMUST00000167488.1|Bend3|ENSMUSG00000038214.8|BEN domain containing 3 	ENSMUST00000040147.7|Bend3|ENSMUSG00000038214.8|BEN domain containing 3
mm10_v2_chr13_+_63014934_63014934	0.0195056	CCAGUGU	ENSMUST00000091560.4|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr11_-_96824008_96824159	0.019339	CCAGUGU	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr5_+_108065742_108065767	0.019339	CCAGUGU	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr13_-_24831409_24831518	0.0182436	CCAGUGU	ENSMUST00000006900.6|Acot13|ENSMUSG00000006717.6|acyl-CoA thioesterase 13
mm10_v2_chr1_+_44119952_44119985	0.0161886	CCAGUGU	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr11_-_49712674_49712726	0.0160656	CCAGUGU	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr4_+_125490688_125490704	0.0147995	CCAGUGU	ENSMUST00000030676.7|Grik3|ENSMUSG00000001985.9|glutamate receptor, ionotropic, kainate 3
mm10_v2_chr7_-_4995298_4995340	0.0147026	CCAGUGU	ENSMUST00000162731.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr2_-_24763047_24763153	0.0133678	CCAGUGU	ENSMUST00000100348.3|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000041342.5|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000114447.1|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000102939.2|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENSMUST00000070864.7|Cacna1b|ENSMUSG00000004113.12|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm10_v2_chr2_+_121506748_121506792	0.0124149	CCAGUGU	ENSMUST00000099473.3|Wdr76|ENSMUSG00000027242.8|WD repeat domain 76 	ENSMUST00000110602.2|Wdr76|ENSMUSG00000027242.8|WD repeat domain 76
mm10_v2_chr14_+_34673888_34673930	0.0123419	CCAGUGU	ENSMUST00000048263.7|Wapal|ENSMUSG00000041408.10|wings apart-like homolog (Drosophila)
mm10_v2_chr5_+_121660528_121660631	0.0121347	CCAGUGU	ENSMUST00000031414.8|Brap|ENSMUSG00000029458.8|BRCA1 associated protein
mm10_v2_chr2_+_11642786_11642798	0.0115111	CCAGUGU	ENSMUST00000028111.4|Il2ra|ENSMUSG00000026770.4|interleukin 2 receptor, alpha chain
mm10_v2_chr16_+_23226014_23226077	0.0110455	CCAGUGU	ENSMUST00000178797.1|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr11_-_103954015_103954056	0.0103064	CCAGUGU	ENSMUST00000103075.4|Nsf|ENSMUSG00000034187.12|N-ethylmaleimide sensitive fusion protein
mm10_v2_chr13_+_89540636_89540678	0.00955183	CCAGUGU	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr16_-_31275277_31275290	0.00916644	CCAGUGU	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr5_-_96161990_96162097	0.00889196	CCAGUGU	ENSMUST00000155901.1|Cnot6l|ENSMUSG00000034724.11|CCR4-NOT transcription complex, subunit 6-like
mm10_v2_chr17_-_35074485_35074500	0.00860692	CCAGUGU	ENSMUST00000007259.3|Ly6g6d|ENSMUSG00000073413.3|lymphocyte antigen 6 complex, locus G6D
mm10_v2_chr18_-_46741544_46741584	0.00843647	CCAGUGU	ENSMUST00000035648.4|Atg12|ENSMUSG00000032905.4|autophagy related 12
mm10_v2_chr6_-_6217023_6217125	0.00841401	CCAGUGU	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr9_-_21592805_21592846	0.00826764	CCAGUGU	ENSMUST00000034700.7|Yipf2|ENSMUSG00000032182.8|Yip1 domain family, member 2 	ENSMUST00000180365.1|Yipf2|ENSMUSG00000032182.8|Yip1 domain family, member 2 	ENSMUST00000078572.7|Yipf2|ENSMUSG00000032182.8|Yip1 domain family, member 2
mm10_v2_chrX_+_151198078_151198140	0.00801115	CCAGUGU	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr15_+_96287518_96287604	0.00770562	CCAGUGU	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr7_+_102210335_102210445	0.00673015	CCAGUGU	ENSMUST00000140631.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000120879.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000146996.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr19_+_5038826_5038938	0.00614715	CCAGUGU	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr6_+_43265582_43265681	0.00600981	CCAGUGU	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr4_-_126533472_126533613	0.00451408	CCAGUGU	ENSMUST00000084289.4|Ago4|ENSMUSG00000042500.11|argonaute RISC catalytic subunit 4
mm10_v2_chr9_-_56161051_56161075	0.00381599	CCAGUGU	ENSMUST00000034876.8|Tspan3|ENSMUSG00000032324.10|tetraspanin 3
mm10_v2_chr7_-_28598140_28598185	0.00253863	CCAGUGU	ENSMUST00000040531.8|Samd4b|ENSMUSG00000037513.9|sterile alpha motif domain containing 4B 	ENSMUST00000108283.1|Pak4|ENSMUSG00000030602.6|p21 protein (Cdc42/Rac)-activated kinase 4
mm10_v2_chr3_+_100162381_100162536	0.000475658	CCAGUGU	ENSMUST00000029459.3|Gdap2|ENSMUSG00000027865.4|ganglioside-induced differentiation-associated-protein 2 	ENSMUST00000106997.1|Gdap2|ENSMUSG00000027865.4|ganglioside-induced differentiation-associated-protein 2
