mm10_v2_chr2_+_131186942_131186971	3.58733	CAGUGCA	ENSMUST00000028804.8|Cdc25b|ENSMUSG00000027330.10|cell division cycle 25B 	ENSMUST00000079857.8|Cdc25b|ENSMUSG00000027330.10|cell division cycle 25B
mm10_v2_chr16_-_42340595_42340651	2.89798	CAGUGCA	ENSMUST00000102817.4|Gap43|ENSMUSG00000047261.9|growth associated protein 43
mm10_v2_chr9_-_20959785_20959888	2.27373	CAGUGCA	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr6_-_67037399_67037417	1.95062	CAGUGCA	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chrX_-_142966709_142966734	1.94642	CAGUGCA	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chrX_+_106027300_106027323	1.90073	CAGUGCA	ENSMUST00000055941.6|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr12_+_24831583_24831658	1.87732	CAGUGCA	ENSMUST00000110942.3|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2 	ENSMUST00000078902.6|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2
mm10_v2_chr9_+_70678950_70679010	1.78817	CAGUGCA	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr4_+_132074697_132074697	1.64684	CAGUGCA	ENSMUST00000094662.1|Gm10300|ENSMUSG00000070717.1|predicted gene 10300
mm10_v2_chr6_-_56901870_56901891	1.6077	CAGUGCA	ENSMUST00000101367.2|Nt5c3|ENSMUSG00000029780.8|5'-nucleotidase, cytosolic III
mm10_v2_chr4_-_134018829_134018841	1.54382	CAGUGCA	ENSMUST00000051674.2|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr12_-_81781121_81781176	1.47046	CAGUGCA	ENSMUST00000035987.7|Map3k9|ENSMUSG00000042724.7|mitogen-activated protein kinase kinase kinase 9
mm10_v2_chr4_+_140700487_140700541	1.42307	CAGUGCA	ENSMUST00000071169.2|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chr12_+_102129019_102129174	1.34638	CAGUGCA	ENSMUST00000079020.4|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr4_+_119108711_119108758	1.34151	CAGUGCA	ENSMUST00000030398.3|Slc2a1|ENSMUSG00000028645.4|solute carrier family 2 (facilitated glucose transporter), member 1
mm10_v2_chr15_-_73184840_73184971	1.31637	CAGUGCA	ENSMUST00000044113.10|Ago2|ENSMUSG00000036698.10|argonaute RISC catalytic subunit 2
mm10_v2_chr1_-_133753681_133753857	1.30971	CAGUGCA	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr16_-_74411292_74411430	1.3053	CAGUGCA	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr11_+_94990996_94991035	1.29838	CAGUGCA	ENSMUST00000038696.5|Ppp1r9b|ENSMUSG00000038976.6|protein phosphatase 1, regulatory subunit 9B
mm10_v2_chr11_-_109473598_109473666	1.29761	CAGUGCA	ENSMUST00000070152.5|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr5_+_143622440_143622459	1.2882	CAGUGCA	ENSMUST00000116456.3|Cyth3|ENSMUSG00000018001.12|cytohesin 3
mm10_v2_chr7_-_38107490_38107534	1.2415	CAGUGCA	ENSMUST00000108023.3|Ccne1|ENSMUSG00000002068.10|cyclin E1
mm10_v2_chr14_-_65425453_65425472	1.23963	CAGUGCA	ENSMUST00000059339.5|Pnoc|ENSMUSG00000045731.5|prepronociceptin
mm10_v2_chr5_+_33995984_33996030	1.19779	CAGUGCA	ENSMUST00000056355.8|Nat8l|ENSMUSG00000048142.8|N-acetyltransferase 8-like
mm10_v2_chr6_+_7844806_7844859	1.17099	CAGUGCA	ENSMUST00000040159.4|C1galt1|ENSMUSG00000042460.4|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm10_v2_chr19_+_36926071_36926177	1.14044	CAGUGCA	ENSMUST00000099494.3|Btaf1|ENSMUSG00000040565.7|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm10_v2_chr6_-_39206782_39206831	1.12481	CAGUGCA	ENSMUST00000002305.8|Jhdm1d|ENSMUSG00000042599.8|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm10_v2_chr3_-_127409044_127409064	1.07241	CAGUGCA	ENSMUST00000182704.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr1_-_181842334_181842401	1.06766	CAGUGCA	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chrX_-_157492280_157492340	1.02958	CAGUGCA	ENSMUST00000112529.1|Sms|ENSMUSG00000071708.5|spermine synthase
mm10_v2_chr4_-_44167580_44167608	1.02876	CAGUGCA	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr11_+_31872100_31872226	1.00569	CAGUGCA	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr9_-_30922452_30922567	0.947007	CAGUGCA	ENSMUST00000065112.6|Adamts15|ENSMUSG00000033453.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
mm10_v2_chr11_-_85139939_85140038	0.918372	CAGUGCA	ENSMUST00000108075.2|Usp32|ENSMUSG00000000804.8|ubiquitin specific peptidase 32
mm10_v2_chr3_-_116424007_116424032	0.914674	CAGUGCA	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chrX_+_68678541_68678554	0.911141	CAGUGCA	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr18_-_10181792_10181792	0.908693	CAGUGCA	ENSMUST00000067947.5|Rock1|ENSMUSG00000024290.8|Rho-associated coiled-coil containing protein kinase 1
mm10_v2_chr1_-_97661950_97662074	0.882273	CAGUGCA	ENSMUST00000053033.7|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed 	ENSMUST00000149927.1|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed
mm10_v2_chr17_-_17624458_17624496	0.8806	CAGUGCA	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr3_-_50443603_50443615	0.860012	CAGUGCA	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr5_+_32458974_32459110	0.854331	CAGUGCA	ENSMUST00000015100.8|Ppp1cb|ENSMUSG00000014956.9|protein phosphatase 1, catalytic subunit, beta isoform
mm10_v2_chr13_+_5861489_5861501	0.843551	CAGUGCA	ENSMUST00000000080.6|Klf6|ENSMUSG00000000078.6|Kruppel-like factor 6
mm10_v2_chr11_+_121259983_121260055	0.840124	CAGUGCA	ENSMUST00000106113.1|Foxk2|ENSMUSG00000039275.9|forkhead box K2
mm10_v2_chr11_-_49712674_49712726	0.830191	CAGUGCA	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr17_+_75005523_75005568	0.825647	CAGUGCA	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr2_-_153529941_153529985	0.825386	CAGUGCA	ENSMUST00000035346.7|8430427H17Rik|ENSMUSG00000061411.6|RIKEN cDNA 8430427H17 gene
mm10_v2_chr3_-_158036630_158036647	0.804277	CAGUGCA	ENSMUST00000121326.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr10_-_71159676_71159708	0.804114	CAGUGCA	ENSMUST00000014473.5|Bicc1|ENSMUSG00000014329.8|bicaudal C homolog 1 (Drosophila) 	ENSMUST00000143791.1|Bicc1|ENSMUSG00000014329.8|bicaudal C homolog 1 (Drosophila)
mm10_v2_chr3_+_51415986_51416044	0.784372	CAGUGCA	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr18_+_44828471_44828665	0.775858	CAGUGCA	ENSMUST00000037763.7|Ythdc2|ENSMUSG00000034653.8|YTH domain containing 2
mm10_v2_chr11_+_80477015_80477085	0.773332	CAGUGCA	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr5_-_20951769_20951824	0.750689	CAGUGCA	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr3_+_40745430_40745459	0.749038	CAGUGCA	ENSMUST00000077083.6|Hspa4l|ENSMUSG00000025757.7|heat shock protein 4 like
mm10_v2_chr16_-_91011093_91011113	0.73708	CAGUGCA	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr5_+_123343834_123343970	0.718449	CAGUGCA	ENSMUST00000120593.1|Bcl7a|ENSMUSG00000029438.3|B cell CLL/lymphoma 7A
mm10_v2_chr10_+_108162358_108162408	0.717252	CAGUGCA	ENSMUST00000070663.5|Ppp1r12a|ENSMUSG00000019907.9|protein phosphatase 1, regulatory (inhibitor) subunit 12A
mm10_v2_chr5_+_101765120_101765145	0.70577	CAGUGCA	ENSMUST00000031273.8|Cds1|ENSMUSG00000029330.8|CDP-diacylglycerol synthase 1
mm10_v2_chrX_+_159627265_159627298	0.68926	CAGUGCA	ENSMUST00000112456.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr2_+_14074091_14074146	0.686421	CAGUGCA	ENSMUST00000102960.4|Stam|ENSMUSG00000026718.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm10_v2_chr3_+_90341654_90341654	0.672441	CAGUGCA	ENSMUST00000049382.4|Gatad2b|ENSMUSG00000042390.5|GATA zinc finger domain containing 2B
mm10_v2_chr3_-_36571952_36572150	0.66786	CAGUGCA	ENSMUST00000029270.3|Ccna2|ENSMUSG00000027715.3|cyclin A2
mm10_v2_chr7_+_100472985_100472998	0.662008	CAGUGCA	ENSMUST00000032958.7|Ucp3|ENSMUSG00000032942.8|uncoupling protein 3 (mitochondrial, proton carrier) 	ENSMUST00000107059.1|Ucp3|ENSMUSG00000032942.8|uncoupling protein 3 (mitochondrial, proton carrier)
mm10_v2_chr12_+_76370266_76370266	0.661891	CAGUGCA	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr8_-_113848615_113848774	0.655146	CAGUGCA	ENSMUST00000093113.4|Adamts18|ENSMUSG00000053399.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm10_v2_chr2_-_60125651_60125775	0.645731	CAGUGCA	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr15_+_5143861_5143896	0.641405	CAGUGCA	ENSMUST00000051186.8|Prkaa1|ENSMUSG00000050697.8|protein kinase, AMP-activated, alpha 1 catalytic subunit
mm10_v2_chr15_+_6708372_6708396	0.637526	CAGUGCA	ENSMUST00000061656.6|Rictor|ENSMUSG00000050310.8|RPTOR independent companion of MTOR, complex 2
mm10_v2_chr5_-_122900267_122900377	0.611626	CAGUGCA	ENSMUST00000031435.7|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr7_-_142095266_142095306	0.610107	CAGUGCA	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr1_-_37541003_37541046	0.606301	CAGUGCA	ENSMUST00000151952.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr5_-_67847400_67847439	0.601432	CAGUGCA	ENSMUST00000113652.1|Atp8a1|ENSMUSG00000037685.9|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENSMUST00000113651.1|Atp8a1|ENSMUSG00000037685.9|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 	ENSMUST00000037380.8|Atp8a1|ENSMUSG00000037685.9|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm10_v2_chr14_+_30479565_30479685	0.59922	CAGUGCA	ENSMUST00000022535.7|Dcp1a|ENSMUSG00000021962.8|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm10_v2_chr15_-_96460838_96460856	0.598667	CAGUGCA	ENSMUST00000047835.6|Scaf11|ENSMUSG00000033228.7|SR-related CTD-associated factor 11
mm10_v2_chr18_+_60925612_60925639	0.594723	CAGUGCA	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr2_+_25180737_25180764	0.581594	CAGUGCA	ENSMUST00000104999.2|Nrarp|ENSMUSG00000078202.2|Notch-regulated ankyrin repeat protein
mm10_v2_chr16_+_11066292_11066381	0.578482	CAGUGCA	ENSMUST00000089011.4|Snn|ENSMUSG00000037972.6|stannin
mm10_v2_chr10_+_40349265_40349387	0.567795	CAGUGCA	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr9_+_58629102_58629110	0.566583	CAGUGCA	ENSMUST00000176250.1|Nptn|ENSMUSG00000032336.11|neuroplastin
mm10_v2_chr16_+_72663143_72663189	0.56427	CAGUGCA	ENSMUST00000023600.7|Robo1|ENSMUSG00000022883.10|roundabout homolog 1 (Drosophila)
mm10_v2_chr4_+_62965560_62965617	0.563088	CAGUGCA	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chr12_+_4592992_4593087	0.557201	CAGUGCA	ENSMUST00000062580.7|Itsn2|ENSMUSG00000020640.9|intersectin 2
mm10_v2_chr15_+_80711292_80711340	0.554945	CAGUGCA	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr1_-_170215380_170215420	0.547275	CAGUGCA	ENSMUST00000027979.7|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1 	ENSMUST00000123399.1|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1
mm10_v2_chr2_+_106693185_106693278	0.54251	CAGUGCA	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr7_-_47008397_47008421	0.54042	CAGUGCA	ENSMUST00000061639.7|Spty2d1|ENSMUSG00000049516.7|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm10_v2_chr15_+_76351303_76351337	0.53796	CAGUGCA	ENSMUST00000023212.8|Maf1|ENSMUSG00000022553.9|MAF1 homolog (S. cerevisiae) 	ENSMUST00000160172.1|Maf1|ENSMUSG00000022553.9|MAF1 homolog (S. cerevisiae)
mm10_v2_chr12_-_27342696_27342726	0.536303	CAGUGCA	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chrX_-_104413825_104413856	0.529006	CAGUGCA	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr5_-_36695969_36696041	0.526304	CAGUGCA	ENSMUST00000031091.9|D5Ertd579e|ENSMUSG00000029190.13|DNA segment, Chr 5, ERATO Doi 579, expressed 	ENSMUST00000140063.1|D5Ertd579e|ENSMUSG00000029190.13|DNA segment, Chr 5, ERATO Doi 579, expressed
mm10_v2_chr16_-_8792302_8792326	0.52084	CAGUGCA	ENSMUST00000160405.1|Usp7|ENSMUSG00000022710.11|ubiquitin specific peptidase 7
mm10_v2_chr4_+_8691303_8691380	0.519524	CAGUGCA	ENSMUST00000051558.3|Chd7|ENSMUSG00000041235.5|chromodomain helicase DNA binding protein 7
mm10_v2_chr18_-_77713978_77714010	0.510082	CAGUGCA	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr13_+_55209776_55209788	0.508767	CAGUGCA	ENSMUST00000099490.2|Nsd1|ENSMUSG00000021488.7|nuclear receptor-binding SET-domain protein 1
mm10_v2_chr9_+_15306212_15306219	0.507388	CAGUGCA	ENSMUST00000034415.5|Taf1d|ENSMUSG00000031939.9|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D 	ENSMUST00000164079.1|Taf1d|ENSMUSG00000031939.9|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D
mm10_v2_chr7_+_90130227_90130279	0.506782	CAGUGCA	ENSMUST00000049537.7|Picalm|ENSMUSG00000039361.9|phosphatidylinositol binding clathrin assembly protein
mm10_v2_chr2_-_170131156_170131220	0.499063	CAGUGCA	ENSMUST00000063710.6|Zfp217|ENSMUSG00000052056.8|zinc finger protein 217
mm10_v2_chr11_-_113684155_113684186	0.482348	CAGUGCA	ENSMUST00000120194.1|Fam104a|ENSMUSG00000041629.7|family with sequence similarity 104, member A
mm10_v2_chr4_+_129105532_129105622	0.477262	CAGUGCA	ENSMUST00000106064.3|Tmem54|ENSMUSG00000028786.9|transmembrane protein 54 	ENSMUST00000030575.8|Tmem54|ENSMUSG00000028786.9|transmembrane protein 54 	ENSMUST00000030577.4|Tmem54|ENSMUSG00000028786.9|transmembrane protein 54
mm10_v2_chr6_+_134920401_134920434	0.475605	CAGUGCA	ENSMUST00000067327.4|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B 	ENSMUST00000003115.6|Cdkn1b|ENSMUSG00000003031.8|cyclin-dependent kinase inhibitor 1B
mm10_v2_chr12_+_37108533_37108546	0.465916	CAGUGCA	ENSMUST00000041183.5|Meox2|ENSMUSG00000036144.5|mesenchyme homeobox 2
mm10_v2_chr5_-_24540439_24540592	0.464188	CAGUGCA	ENSMUST00000048302.6|Asb10|ENSMUSG00000038204.7|ankyrin repeat and SOCS box-containing 10 	ENSMUST00000119657.1|Asb10|ENSMUSG00000038204.7|ankyrin repeat and SOCS box-containing 10
mm10_v2_chr4_-_55532453_55532485	0.463475	CAGUGCA	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr11_-_69413675_69413675	0.462864	CAGUGCA	ENSMUST00000094077.4|Kdm6b|ENSMUSG00000018476.7|KDM1 lysine (K)-specific demethylase 6B
mm10_v2_chr13_-_17805093_17805189	0.460932	CAGUGCA	ENSMUST00000042365.7|Cdk13|ENSMUSG00000041297.7|cyclin-dependent kinase 13
mm10_v2_chr4_+_103114385_103114395	0.45757	CAGUGCA	ENSMUST00000106858.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr1_-_186705980_186705999	0.455444	CAGUGCA	ENSMUST00000045288.8|Tgfb2|ENSMUSG00000039239.9|transforming growth factor, beta 2
mm10_v2_chr14_-_46822232_46822266	0.455329	CAGUGCA	ENSMUST00000111817.1|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta 	ENSMUST00000079314.5|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta
mm10_v2_chr19_+_8819401_8819401	0.444359	CAGUGCA	ENSMUST00000096753.3|Hnrnpul2|ENSMUSG00000071659.3|heterogeneous nuclear ribonucleoprotein U-like 2
mm10_v2_chr15_-_50889691_50889714	0.427759	CAGUGCA	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr2_+_127008711_127008756	0.427555	CAGUGCA	ENSMUST00000110394.1|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1 	ENSMUST00000002063.8|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1
mm10_v2_chr9_-_82975475_82975493	0.419659	CAGUGCA	ENSMUST00000034787.5|Phip|ENSMUSG00000032253.7|pleckstrin homology domain interacting protein
mm10_v2_chr4_+_59189240_59189257	0.417375	CAGUGCA	ENSMUST00000030074.7|Ugcg|ENSMUSG00000028381.8|UDP-glucose ceramide glucosyltransferase
mm10_v2_chr5_+_33820695_33820835	0.413368	CAGUGCA	ENSMUST00000075812.4|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000114397.2|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000155880.1|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human)
mm10_v2_chr15_+_40655020_40655054	0.412848	CAGUGCA	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr4_-_94603239_94603253	0.41265	CAGUGCA	ENSMUST00000107107.2|Plaa|ENSMUSG00000028577.7|phospholipase A2, activating protein
mm10_v2_chr13_-_93499803_93499825	0.40893	CAGUGCA	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chr9_-_43105718_43105793	0.407141	CAGUGCA	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr4_-_53159885_53159900	0.403524	CAGUGCA	ENSMUST00000030010.3|Abca1|ENSMUSG00000015243.4|ATP-binding cassette, sub-family A (ABC1), member 1
mm10_v2_chr10_+_72309225_72309225	0.402745	CAGUGCA	ENSMUST00000061324.4|Gm9923|ENSMUSG00000053830.3|predicted pseudogene 9923
mm10_v2_chr7_+_123123870_123123901	0.402497	CAGUGCA	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr2_-_132578155_132578233	0.393289	CAGUGCA	ENSMUST00000110136.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000124107.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000060955.5|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr8_+_121730563_121730589	0.388285	CAGUGCA	ENSMUST00000026357.5|Jph3|ENSMUSG00000025318.7|junctophilin 3
mm10_v2_chr18_+_44380479_44380554	0.377373	CAGUGCA	ENSMUST00000025350.8|Dcp2|ENSMUSG00000024472.8|DCP2 decapping enzyme homolog (S. cerevisiae)
mm10_v2_chr15_+_102990576_102990622	0.374183	CAGUGCA	ENSMUST00000001703.6|Hoxc8|ENSMUSG00000001657.6|homeobox C8
mm10_v2_chr18_+_73573044_73573044	0.371367	CAGUGCA	ENSMUST00000091852.4|Mex3c|ENSMUSG00000037253.8|mex3 homolog C (C. elegans)
mm10_v2_chr11_-_102556122_102556199	0.369927	CAGUGCA	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr8_+_79639618_79639730	0.368767	CAGUGCA	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr18_+_78349754_78349754	0.362958	CAGUGCA	ENSMUST00000164064.1|Gm6133|ENSMUSG00000090451.1|predicted gene 6133
mm10_v2_chr16_+_35983307_35983395	0.354023	CAGUGCA	ENSMUST00000004054.6|Kpna1|ENSMUSG00000022905.6|karyopherin (importin) alpha 1
mm10_v2_chr14_+_45351473_45351473	0.35399	CAGUGCA	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr2_+_156840077_156840141	0.352237	CAGUGCA	ENSMUST00000081335.6|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2 	ENSMUST00000073352.3|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr17_-_24251382_24251409	0.348222	CAGUGCA	ENSMUST00000115390.3|Ccnf|ENSMUSG00000072082.6|cyclin F
mm10_v2_chr12_-_69681795_69681869	0.346097	CAGUGCA	ENSMUST00000183277.1|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila) 	ENSMUST00000035773.7|Sos2|ENSMUSG00000034801.7|son of sevenless homolog 2 (Drosophila)
mm10_v2_chr9_+_59750876_59750918	0.341111	CAGUGCA	ENSMUST00000136740.1|Myo9a|ENSMUSG00000039585.9|myosin IXa 	ENSMUST00000135298.1|Myo9a|ENSMUSG00000039585.9|myosin IXa 	ENSMUST00000128341.1|Myo9a|ENSMUSG00000039585.9|myosin IXa
mm10_v2_chr9_+_87022014_87022179	0.338514	CAGUGCA	ENSMUST00000168529.2|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000174724.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000173126.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4
mm10_v2_chr19_-_32388462_32388512	0.338346	CAGUGCA	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr7_-_118129567_118129625	0.330784	CAGUGCA	ENSMUST00000032888.7|Arl6ip1|ENSMUSG00000030654.7|ADP-ribosylation factor-like 6 interacting protein 1
mm10_v2_chr10_-_25200110_25200178	0.328189	CAGUGCA	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr1_+_127204986_127205051	0.32713	CAGUGCA	ENSMUST00000038361.4|Mgat5|ENSMUSG00000036155.7|mannoside acetylglucosaminyltransferase 5
mm10_v2_chr7_-_132852657_132852673	0.323188	CAGUGCA	ENSMUST00000033257.8|Mettl10|ENSMUSG00000030960.10|methyltransferase like 10
mm10_v2_chr11_+_120232921_120232952	0.322925	CAGUGCA	ENSMUST00000122148.1|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1 	ENSMUST00000044985.7|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1
mm10_v2_chr13_+_44731265_44731276	0.315575	CAGUGCA	ENSMUST00000173246.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr15_-_99772395_99772462	0.310925	CAGUGCA	ENSMUST00000109035.4|Cers5|ENSMUSG00000023021.9|ceramide synthase 5
mm10_v2_chr2_+_145167706_145167773	0.303043	CAGUGCA	ENSMUST00000110007.1|Slc24a3|ENSMUSG00000063873.4|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
mm10_v2_chr17_-_10319324_10319380	0.300471	CAGUGCA	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr3_+_59006978_59006978	0.300209	CAGUGCA	ENSMUST00000040325.7|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000164225.1|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000040846.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like 	ENSMUST00000029393.8|Med12l|ENSMUSG00000056476.7|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm10_v2_chr5_+_146231211_146231385	0.299651	CAGUGCA	ENSMUST00000161181.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000161652.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000031640.8|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000159467.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8
mm10_v2_chr11_+_69901816_69901894	0.29613	CAGUGCA	ENSMUST00000177138.1|Neurl4|ENSMUSG00000047284.8|neuralized homolog 4 (Drosophila) 	ENSMUST00000108617.3|Neurl4|ENSMUSG00000047284.8|neuralized homolog 4 (Drosophila) 	ENSMUST00000177476.1|Neurl4|ENSMUSG00000047284.8|neuralized homolog 4 (Drosophila) 	ENSMUST00000061837.4|Neurl4|ENSMUSG00000047284.8|neuralized homolog 4 (Drosophila)
mm10_v2_chr10_-_119240006_119240092	0.292716	CAGUGCA	ENSMUST00000020315.6|Cand1|ENSMUSG00000020114.6|cullin associated and neddylation disassociated 1
mm10_v2_chr3_+_34020075_34020082	0.291548	CAGUGCA	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr13_+_20090538_20090633	0.291144	CAGUGCA	ENSMUST00000072519.5|Elmo1|ENSMUSG00000041112.9|engulfment and cell motility 1
mm10_v2_chr3_+_105452326_105452365	0.286438	CAGUGCA	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr13_+_46418266_46418316	0.285543	CAGUGCA	ENSMUST00000037923.3|Rbm24|ENSMUSG00000038132.5|RNA binding motif protein 24
mm10_v2_chr3_-_9610074_9610086	0.283042	CAGUGCA	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr6_-_13677930_13677974	0.282192	CAGUGCA	ENSMUST00000045235.5|B630005N14Rik|ENSMUSG00000042742.5|RIKEN cDNA B630005N14 gene
mm10_v2_chr9_+_72532214_72532271	0.28148	CAGUGCA	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr7_+_27862557_27862557	0.278416	CAGUGCA	ENSMUST00000053722.8|Zfp607|ENSMUSG00000020420.7|zinc finger proten 607
mm10_v2_chr14_+_34673888_34673930	0.270157	CAGUGCA	ENSMUST00000048263.7|Wapal|ENSMUSG00000041408.10|wings apart-like homolog (Drosophila)
mm10_v2_chr5_-_137072254_137072277	0.266436	CAGUGCA	ENSMUST00000077523.3|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1 	ENSMUST00000041388.4|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm10_v2_chr8_+_121084352_121084474	0.263383	CAGUGCA	ENSMUST00000181504.1|Foxf1|ENSMUSG00000042812.4|forkhead box F1 	ENSMUST00000050684.1|Foxf1|ENSMUSG00000042812.4|forkhead box F1
mm10_v2_chr2_-_179976646_179976665	0.259855	CAGUGCA	ENSMUST00000041618.7|Taf4a|ENSMUSG00000039117.10|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr17_-_88065291_88065291	0.258396	CAGUGCA	ENSMUST00000005504.8|Fbxo11|ENSMUSG00000005371.8|F-box protein 11
mm10_v2_chr10_-_111010001_111010066	0.257746	CAGUGCA	ENSMUST00000099285.3|Zdhhc17|ENSMUSG00000035798.7|zinc finger, DHHC domain containing 17 	ENSMUST00000041723.7|Zdhhc17|ENSMUSG00000035798.7|zinc finger, DHHC domain containing 17
mm10_v2_chr11_-_88718223_88718294	0.256425	CAGUGCA	ENSMUST00000107909.1|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr18_+_14783238_14783259	0.255945	CAGUGCA	ENSMUST00000169862.1|Taf4b|ENSMUSG00000054321.6|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr9_+_95637601_95637632	0.252123	CAGUGCA	ENSMUST00000015498.8|Pcolce2|ENSMUSG00000015354.8|procollagen C-endopeptidase enhancer 2
mm10_v2_chr13_-_98815408_98815449	0.248735	CAGUGCA	ENSMUST00000040340.8|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000099277.4|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000179563.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000109403.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2
mm10_v2_chr6_-_100287441_100287465	0.246462	CAGUGCA	ENSMUST00000101118.2|Rybp|ENSMUSG00000072872.2|RING1 and YY1 binding protein
mm10_v2_chr11_-_28584260_28584324	0.244697	CAGUGCA	ENSMUST00000093253.3|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000109502.2|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000042534.8|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A
mm10_v2_chr2_+_18064564_18064644	0.241551	CAGUGCA	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chrX_+_12587791_12587846	0.23719	CAGUGCA	ENSMUST00000033313.2|Atp6ap2|ENSMUSG00000031007.2|ATPase, H+ transporting, lysosomal accessory protein 2
mm10_v2_chr18_+_53176345_53176376	0.232975	CAGUGCA	ENSMUST00000037850.5|Snx2|ENSMUSG00000034484.7|sorting nexin 2
mm10_v2_chr3_+_152210458_152210534	0.231731	CAGUGCA	ENSMUST00000166984.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1 	ENSMUST00000106121.1|Fubp1|ENSMUSG00000028034.9|far upstream element (FUSE) binding protein 1
mm10_v2_chr13_-_68999518_68999565	0.228576	CAGUGCA	ENSMUST00000022013.7|Adcy2|ENSMUSG00000021536.7|adenylate cyclase 2
mm10_v2_chr14_-_33185066_33185131	0.228451	CAGUGCA	ENSMUST00000061753.8|Wdfy4|ENSMUSG00000051506.10|WD repeat and FYVE domain containing 4 	ENSMUST00000130509.2|Wdfy4|ENSMUSG00000051506.10|WD repeat and FYVE domain containing 4
mm10_v2_chr1_-_21961581_21961581	0.227073	CAGUGCA	ENSMUST00000029667.6|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173058.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5 	ENSMUST00000173404.1|Kcnq5|ENSMUSG00000028033.10|potassium voltage-gated channel, subfamily Q, member 5
mm10_v2_chr2_+_128126030_128126056	0.225768	CAGUGCA	ENSMUST00000089634.5|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000019281.7|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000110341.2|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000103211.1|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator) 	ENSMUST00000103210.1|Bcl2l11|ENSMUSG00000027381.10|BCL2-like 11 (apoptosis facilitator)
mm10_v2_chr8_-_47675130_47675165	0.220841	CAGUGCA	ENSMUST00000080353.2|Ing2|ENSMUSG00000063049.4|inhibitor of growth family, member 2
mm10_v2_chr15_+_81586206_81586250	0.218416	CAGUGCA	ENSMUST00000068387.4|Ep300|ENSMUSG00000055024.6|E1A binding protein p300
mm10_v2_chr8_+_54954728_54954820	0.212521	CAGUGCA	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr7_-_100932140_100932200	0.206714	CAGUGCA	ENSMUST00000107032.1|Arhgef17|ENSMUSG00000032875.7|Rho guanine nucleotide exchange factor (GEF) 17
mm10_v2_chr1_+_177444653_177444669	0.203359	CAGUGCA	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr15_+_12205009_12205040	0.20041	CAGUGCA	ENSMUST00000038172.8|Mtmr12|ENSMUSG00000039458.8|myotubularin related protein 12
mm10_v2_chr6_-_72958465_72958496	0.200226	CAGUGCA	ENSMUST00000114050.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr8_+_110721462_110721486	0.198611	CAGUGCA	ENSMUST00000052457.8|Mtss1l|ENSMUSG00000033763.8|metastasis suppressor 1-like
mm10_v2_chr7_+_29134854_29134957	0.197296	CAGUGCA	ENSMUST00000161522.1|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000159975.1|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000032811.5|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4 	ENSMUST00000094617.4|Rasgrp4|ENSMUSG00000030589.9|RAS guanyl releasing protein 4
mm10_v2_chrX_-_108834303_108834381	0.194946	CAGUGCA	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr3_+_152346465_152346531	0.193497	CAGUGCA	ENSMUST00000026507.6|Usp33|ENSMUSG00000025437.9|ubiquitin specific peptidase 33 	ENSMUST00000117492.2|Usp33|ENSMUSG00000025437.9|ubiquitin specific peptidase 33
mm10_v2_chr10_+_81136223_81136271	0.188372	CAGUGCA	ENSMUST00000048128.8|Zbtb7a|ENSMUSG00000035011.9|zinc finger and BTB domain containing 7a
mm10_v2_chr12_-_104751900_104751952	0.186597	CAGUGCA	ENSMUST00000041987.6|Dicer1|ENSMUSG00000041415.9|dicer 1, ribonuclease type III
mm10_v2_chr17_-_33718591_33718690	0.18121	CAGUGCA	ENSMUST00000174040.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173015.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000066121.6|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000172767.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173329.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2
mm10_v2_chr3_+_3508024_3508069	0.174361	CAGUGCA	ENSMUST00000108393.1|Hnf4g|ENSMUSG00000017688.8|hepatocyte nuclear factor 4, gamma 	ENSMUST00000017832.8|Hnf4g|ENSMUSG00000017688.8|hepatocyte nuclear factor 4, gamma
mm10_v2_chr1_+_132417409_132417464	0.171557	CAGUGCA	ENSMUST00000045110.7|Dstyk|ENSMUSG00000042046.9|dual serine/threonine and tyrosine protein kinase
mm10_v2_chr13_-_21440901_21441069	0.171541	CAGUGCA	ENSMUST00000122872.1|Pgbd1|ENSMUSG00000055313.8|piggyBac transposable element derived 1 	ENSMUST00000151743.1|Pgbd1|ENSMUSG00000055313.8|piggyBac transposable element derived 1 	ENSMUST00000148071.1|Pgbd1|ENSMUSG00000055313.8|piggyBac transposable element derived 1
mm10_v2_chr10_+_110745433_110745572	0.170942	CAGUGCA	ENSMUST00000174857.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000073781.5|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173471.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173634.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7
mm10_v2_chr8_+_111940697_111940708	0.170277	CAGUGCA	ENSMUST00000034428.7|Gabarapl2|ENSMUSG00000031950.7|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm10_v2_chr9_-_119322421_119322449	0.17004	CAGUGCA	ENSMUST00000040853.4|Oxsr1|ENSMUSG00000036737.6|oxidative-stress responsive 1
mm10_v2_chr18_-_10610124_10610144	0.164888	CAGUGCA	ENSMUST00000097670.3|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr9_+_44604844_44604921	0.163395	CAGUGCA	ENSMUST00000170489.1|Ddx6|ENSMUSG00000032097.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm10_v2_chr4_+_14864076_14864150	0.162607	CAGUGCA	ENSMUST00000029875.3|Tmem55a|ENSMUSG00000028221.3|transmembrane protein 55A
mm10_v2_chr9_+_57708534_57708608	0.159779	CAGUGCA	ENSMUST00000043990.7|Edc3|ENSMUSG00000038957.7|enhancer of mRNA decapping 3 homolog (S. cerevisiae) 	ENSMUST00000142807.1|Edc3|ENSMUSG00000038957.7|enhancer of mRNA decapping 3 homolog (S. cerevisiae)
mm10_v2_chr5_+_88720855_88720876	0.15446	CAGUGCA	ENSMUST00000113229.1|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B 	ENSMUST00000006424.7|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B
mm10_v2_chr15_-_98004695_98004708	0.151694	CAGUGCA	ENSMUST00000023123.8|Col2a1|ENSMUSG00000022483.10|collagen, type II, alpha 1
mm10_v2_chr8_-_8660773_8660773	0.151492	CAGUGCA	ENSMUST00000001319.7|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr4_+_33924632_33924651	0.149612	CAGUGCA	ENSMUST00000057188.6|Cnr1|ENSMUSG00000044288.6|cannabinoid receptor 1 (brain)
mm10_v2_chr2_-_125506385_125506408	0.14475	CAGUGCA	ENSMUST00000028633.6|Fbn1|ENSMUSG00000027204.7|fibrillin 1
mm10_v2_chr4_-_132510493_132510509	0.143251	CAGUGCA	ENSMUST00000030724.8|Sesn2|ENSMUSG00000028893.8|sestrin 2
mm10_v2_chr5_+_76183880_76183970	0.13895	CAGUGCA	ENSMUST00000031144.7|Tmem165|ENSMUSG00000029234.7|transmembrane protein 165
mm10_v2_chr2_+_163994960_163994960	0.137485	CAGUGCA	ENSMUST00000018470.3|Ywhab|ENSMUSG00000018326.3|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm10_v2_chr13_-_93192270_93192328	0.137161	CAGUGCA	ENSMUST00000048702.5|Papd4|ENSMUSG00000042167.5|PAP associated domain containing 4
mm10_v2_chr7_-_34389540_34389638	0.136144	CAGUGCA	ENSMUST00000085585.5|Lsm14a|ENSMUSG00000066568.6|LSM14 homolog A (SCD6, S. cerevisiae)
mm10_v2_chr9_+_108460518_108460571	0.134763	CAGUGCA	ENSMUST00000061209.5|Ccdc71|ENSMUSG00000049305.5|coiled-coil domain containing 71
mm10_v2_chr11_-_104442232_104442291	0.13229	CAGUGCA	ENSMUST00000106977.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1 	ENSMUST00000106972.1|Kansl1|ENSMUSG00000018412.10|KAT8 regulatory NSL complex subunit 1
mm10_v2_chr15_-_98778150_98778150	0.128156	CAGUGCA	ENSMUST00000023732.5|Wnt10b|ENSMUSG00000022996.8|wingless related MMTV integration site 10b
mm10_v2_chr17_-_48409729_48409906	0.127011	CAGUGCA	ENSMUST00000160319.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000159535.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000078800.6|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000046719.7|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000162460.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha
mm10_v2_chr7_-_34230281_34230308	0.124417	CAGUGCA	ENSMUST00000038027.4|Gpi1|ENSMUSG00000036427.4|glucose phosphate isomerase 1
mm10_v2_chr3_+_103058302_103058352	0.118361	CAGUGCA	ENSMUST00000029445.6|Nras|ENSMUSG00000027852.8|neuroblastoma ras oncogene
mm10_v2_chr6_-_97148908_97148930	0.118233	CAGUGCA	ENSMUST00000142116.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase 	ENSMUST00000113387.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
mm10_v2_chr19_-_24477356_24477490	0.117511	CAGUGCA	ENSMUST00000099556.1|Fam122a|ENSMUSG00000074922.1|family with sequence similarity 122, member A
mm10_v2_chr7_+_4922251_4922251	0.117238	CAGUGCA	ENSMUST00000047309.5|Nat14|ENSMUSG00000035285.5|N-acetyltransferase 14
mm10_v2_chr12_-_31499541_31499616	0.116643	CAGUGCA	ENSMUST00000101499.3|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1 	ENSMUST00000064240.6|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1 	ENSMUST00000085487.5|Cbll1|ENSMUSG00000020659.9|Casitas B-lineage lymphoma-like 1
mm10_v2_chr13_+_55693082_55693151	0.112082	CAGUGCA	ENSMUST00000057844.8|B230219D22Rik|ENSMUSG00000045767.8|RIKEN cDNA B230219D22 gene
mm10_v2_chr19_+_44931119_44931172	0.111632	CAGUGCA	ENSMUST00000096053.3|Fam178a|ENSMUSG00000036097.7|family with sequence similarity 178, member A
mm10_v2_chr3_-_107760221_107760249	0.109992	CAGUGCA	ENSMUST00000153114.1|Csf1|ENSMUSG00000014599.4|colony stimulating factor 1 (macrophage) 	ENSMUST00000118593.1|Csf1|ENSMUSG00000014599.4|colony stimulating factor 1 (macrophage) 	ENSMUST00000120243.1|Csf1|ENSMUSG00000014599.4|colony stimulating factor 1 (macrophage)
mm10_v2_chr10_-_53750880_53750880	0.106698	CAGUGCA	ENSMUST00000020003.7|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr5_+_144100387_144100436	0.106677	CAGUGCA	ENSMUST00000041804.7|Lmtk2|ENSMUSG00000038970.7|lemur tyrosine kinase 2
mm10_v2_chr9_+_22099271_22099287	0.104992	CAGUGCA	ENSMUST00000001384.4|Cnn1|ENSMUSG00000001349.4|calponin 1
mm10_v2_chr9_-_36767595_36767679	0.104723	CAGUGCA	ENSMUST00000120381.2|Stt3a|ENSMUSG00000032116.11|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm10_v2_chr8_+_3515378_3515397	0.100711	CAGUGCA	ENSMUST00000004681.7|Pnpla6|ENSMUSG00000004565.8|patatin-like phospholipase domain containing 6 	ENSMUST00000111070.2|Pnpla6|ENSMUSG00000004565.8|patatin-like phospholipase domain containing 6
mm10_v2_chr16_-_18289199_18289260	0.0995965	CAGUGCA	ENSMUST00000009321.4|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8 	ENSMUST00000115633.1|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8
mm10_v2_chr6_+_113307160_113307230	0.0993254	CAGUGCA	ENSMUST00000113122.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1 	ENSMUST00000113119.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1 	ENSMUST00000113121.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1 	ENSMUST00000113117.1|Brpf1|ENSMUSG00000001632.10|bromodomain and PHD finger containing, 1
mm10_v2_chr5_+_135168283_135168373	0.0987661	CAGUGCA	ENSMUST00000031692.5|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chrX_-_53370470_53370502	0.096705	CAGUGCA	ENSMUST00000096447.2|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1 	ENSMUST00000023836.3|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1
mm10_v2_chr6_+_143167210_143167267	0.095735	CAGUGCA	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr7_+_46796088_46796134	0.0956681	CAGUGCA	ENSMUST00000006774.4|Gtf2h1|ENSMUSG00000006599.7|general transcription factor II H, polypeptide 1 	ENSMUST00000165031.1|Gtf2h1|ENSMUSG00000006599.7|general transcription factor II H, polypeptide 1
mm10_v2_chr3_-_122619663_122619680	0.0859418	CAGUGCA	ENSMUST00000162409.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr5_-_52190484_52190524	0.0847663	CAGUGCA	ENSMUST00000031061.7|Dhx15|ENSMUSG00000029169.7|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm10_v2_chr15_-_77307043_77307058	0.0817286	CAGUGCA	ENSMUST00000048145.5|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000171751.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr2_-_119477613_119477705	0.0800099	CAGUGCA	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr4_-_129378116_129378116	0.0751381	CAGUGCA	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr8_+_12757002_12757027	0.073243	CAGUGCA	ENSMUST00000033818.3|Atp11a|ENSMUSG00000031441.9|ATPase, class VI, type 11A 	ENSMUST00000091237.5|Atp11a|ENSMUSG00000031441.9|ATPase, class VI, type 11A
mm10_v2_chr2_-_25983236_25983290	0.0708181	CAGUGCA	ENSMUST00000114167.2|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000091268.4|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000183461.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr9_-_44881274_44881323	0.0694019	CAGUGCA	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr10_+_128092771_128092819	0.0692448	CAGUGCA	ENSMUST00000170054.2|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A 	ENSMUST00000045621.8|Baz2a|ENSMUSG00000040054.9|bromodomain adjacent to zinc finger domain, 2A
mm10_v2_chr12_-_100725028_100725081	0.0682463	CAGUGCA	ENSMUST00000043599.6|Rps6ka5|ENSMUSG00000021180.8|ribosomal protein S6 kinase, polypeptide 5
mm10_v2_chr16_+_33185045_33185153	0.0671121	CAGUGCA	ENSMUST00000039733.8|Osbpl11|ENSMUSG00000022807.8|oxysterol binding protein-like 11
mm10_v2_chr3_-_90052463_90052521	0.0665838	CAGUGCA	ENSMUST00000029553.9|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000064639.8|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000090908.6|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like
mm10_v2_chr12_+_52516077_52516077	0.0640118	CAGUGCA	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr4_+_119814495_119814526	0.0627611	CAGUGCA	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr7_+_126776939_126777213	0.0627605	CAGUGCA	ENSMUST00000038614.5|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000170882.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000106359.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000106357.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000145762.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000132643.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila) 	ENSMUST00000106356.1|Ypel3|ENSMUSG00000042675.9|yippee-like 3 (Drosophila)
mm10_v2_chr4_+_86748526_86748558	0.0534639	CAGUGCA	ENSMUST00000082026.7|Dennd4c|ENSMUSG00000038024.11|DENN/MADD domain containing 4C 	ENSMUST00000045512.8|Dennd4c|ENSMUSG00000038024.11|DENN/MADD domain containing 4C
mm10_v2_chr4_+_116075269_116075387	0.053168	CAGUGCA	ENSMUST00000030471.8|Lrrc41|ENSMUSG00000028703.8|leucine rich repeat containing 41
mm10_v2_chr6_-_72380416_72380483	0.0455755	CAGUGCA	ENSMUST00000101285.3|Vamp5|ENSMUSG00000073002.3|vesicle-associated membrane protein 5 	ENSMUST00000074231.3|Vamp5|ENSMUSG00000073002.3|vesicle-associated membrane protein 5
mm10_v2_chr1_+_58973521_58973582	0.0449157	CAGUGCA	ENSMUST00000114296.1|Stradb|ENSMUSG00000026027.7|STE20-related kinase adaptor beta 	ENSMUST00000027185.4|Stradb|ENSMUSG00000026027.7|STE20-related kinase adaptor beta
mm10_v2_chr5_-_73647713_73647754	0.0411893	CAGUGCA	ENSMUST00000081170.7|Sgcb|ENSMUSG00000029156.10|sarcoglycan, beta (dystrophin-associated glycoprotein)
mm10_v2_chr2_+_156196642_156196775	0.0406918	CAGUGCA	ENSMUST00000037401.8|Phf20|ENSMUSG00000038116.10|PHD finger protein 20
mm10_v2_chr4_+_136310952_136310984	0.0366561	CAGUGCA	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr5_-_124425907_124425946	0.0365727	CAGUGCA	ENSMUST00000065263.5|Sbno1|ENSMUSG00000038095.9|sno, strawberry notch homolog 1 (Drosophila)
mm10_v2_chr8_+_90828820_90828842	0.0359757	CAGUGCA	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr2_+_130450259_130450309	0.0342115	CAGUGCA	ENSMUST00000028769.6|Ptpra|ENSMUSG00000027303.11|protein tyrosine phosphatase, receptor type, A
mm10_v2_chr8_+_109778554_109778558	0.0324058	CAGUGCA	ENSMUST00000093157.6|Ap1g1|ENSMUSG00000031731.10|adaptor protein complex AP-1, gamma 1 subunit
mm10_v2_chr1_+_156558844_156559049	0.0298755	CAGUGCA	ENSMUST00000166172.2|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 	ENSMUST00000027888.6|Abl2|ENSMUSG00000026596.7|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm10_v2_chr2_-_20968881_20968957	0.0295246	CAGUGCA	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr8_-_47352348_47352367	0.029169	CAGUGCA	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr7_+_112679314_112679325	0.0290836	CAGUGCA	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr6_-_92183972_92184038	0.0233379	CAGUGCA	ENSMUST00000140438.1|Mrps25|ENSMUSG00000014551.8|mitochondrial ribosomal protein S25
mm10_v2_chr9_-_99436687_99436733	0.014412	CAGUGCA	ENSMUST00000035045.8|Mras|ENSMUSG00000032470.10|muscle and microspikes RAS
mm10_v2_chr7_+_24636566_24636589	0.00672705	CAGUGCA	ENSMUST00000080718.4|Lypd3|ENSMUSG00000057454.4|Ly6/Plaur domain containing 3
mm10_v2_chr19_+_41482632_41482688	0.00384748	CAGUGCA	ENSMUST00000067795.5|Lcor|ENSMUSG00000025019.9|ligand dependent nuclear receptor corepressor
mm10_v2_chr1_-_54194048_54194048	0.00299929	CAGUGCA	ENSMUST00000120904.1|Hecw2|ENSMUSG00000042807.9|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chr14_-_65098031_65098106	0.00249854	CAGUGCA	ENSMUST00000022550.7|Extl3|ENSMUSG00000021978.8|exostoses (multiple)-like 3
