mm10_v2_chrX_-_136068236_136068236	4.32713	Bhlhe40	ENSMUST00000049130.7|Bex2|ENSMUSG00000042750.7|brain expressed X-linked 2
mm10_v2_chrX_-_136203637_136203926	3.93284	Bhlhe40	ENSMUST00000151592.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000131510.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000066819.4|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5
mm10_v2_chrX_+_136138996_136139053	3.54181	Bhlhe40	ENSMUST00000116527.1|Bex4|ENSMUSG00000047844.3|brain expressed gene 4
mm10_v2_chrX_+_136270253_136270269	3.5028	Bhlhe40	ENSMUST00000178632.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENSMUST00000053540.4|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chr4_+_148039097_148039190	2.89633	Bhlhe40	ENSMUST00000141283.1|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chr4_+_148039035_148039087	2.88785	Bhlhe40	ENSMUST00000097788.4|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chrX_+_136270302_136270352	2.52599	Bhlhe40	ENSMUST00000113112.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chrX_-_135210672_135210700	2.31444	Bhlhe40	ENSMUST00000033783.1|Tceal6|ENSMUSG00000031409.1|transcription elongation factor A (SII)-like 6
mm10_v2_chr2_+_30286383_30286397	1.92201	Bhlhe40	ENSMUST00000064447.5|Nup188|ENSMUSG00000052533.8|nucleoporin 188
mm10_v2_chr9_-_97111117_97111159	1.64353	Bhlhe40	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr2_-_160619971_160619971	1.28012	Bhlhe40	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr2_+_30286406_30286442	1.26343	Bhlhe40	ENSMUST00000138666.1|Nup188|ENSMUSG00000052533.8|nucleoporin 188 	ENSMUST00000113634.2|Nup188|ENSMUSG00000052533.8|nucleoporin 188
mm10_v2_chr2_+_84839395_84839424	1.25417	Bhlhe40	ENSMUST00000146816.1|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1 	ENSMUST00000028469.7|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1
mm10_v2_chr2_+_156840966_156841017	1.20772	Bhlhe40	ENSMUST00000109564.1|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr11_-_117780630_117780688	1.1891	Bhlhe40	ENSMUST00000026659.3|Tmc6|ENSMUSG00000025572.11|transmembrane channel-like gene family 6 	ENSMUST00000127227.1|Tmc6|ENSMUSG00000025572.11|transmembrane channel-like gene family 6
mm10_v2_chr11_-_94653964_94653964	1.05273	Bhlhe40	ENSMUST00000039949.4|Eme1|ENSMUSG00000039055.4|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm10_v2_chrX_+_68678712_68678817	0.929103	Bhlhe40	ENSMUST00000114654.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1 	ENSMUST00000114655.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1 	ENSMUST00000114657.2|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1 	ENSMUST00000114653.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr1_-_152766323_152766352	0.905939	Bhlhe40	ENSMUST00000111857.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr6_+_72097561_72097630	0.844436	Bhlhe40	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chrX_-_7188713_7188743	0.802974	Bhlhe40	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chrX_+_68678541_68678554	0.766893	Bhlhe40	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr11_-_75348261_75348324	0.752784	Bhlhe40	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr16_-_44139003_44139026	0.720594	Bhlhe40	ENSMUST00000124102.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr4_+_119422806_119422841	0.686928	Bhlhe40	ENSMUST00000094819.4|Zmynd12|ENSMUSG00000070806.5|zinc finger, MYND domain containing 12
mm10_v2_chr1_-_152766281_152766319	0.680825	Bhlhe40	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr9_+_108002501_108002680	0.678518	Bhlhe40	ENSMUST00000035214.4|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1 	ENSMUST00000175874.1|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1
mm10_v2_chr18_+_53176345_53176376	0.666977	Bhlhe40	ENSMUST00000037850.5|Snx2|ENSMUSG00000034484.7|sorting nexin 2
mm10_v2_chr8_+_85036906_85036925	0.636049	Bhlhe40	ENSMUST00000093360.4|Tnpo2|ENSMUSG00000031691.7|transportin 2 (importin 3, karyopherin beta 2b)
mm10_v2_chr19_-_7241216_7241226	0.634566	Bhlhe40	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr3_-_90052463_90052521	0.62868	Bhlhe40	ENSMUST00000029553.9|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000064639.8|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000090908.6|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like
mm10_v2_chr12_-_3426700_3426782	0.628333	Bhlhe40	ENSMUST00000180149.1|1110002L01Rik|ENSMUSG00000071456.2|RIKEN cDNA 1110002L01 gene
mm10_v2_chr4_-_137048695_137048807	0.62588	Bhlhe40	ENSMUST00000049583.7|Zbtb40|ENSMUSG00000060862.9|zinc finger and BTB domain containing 40
mm10_v2_chr8_+_41239718_41239767	0.61914	Bhlhe40	ENSMUST00000045218.7|Pcm1|ENSMUSG00000031592.9|pericentriolar material 1
mm10_v2_chr16_+_5050012_5050122	0.617125	Bhlhe40	ENSMUST00000052449.5|Ubn1|ENSMUSG00000039473.7|ubinuclein 1
mm10_v2_chr16_-_44139630_44139766	0.55095	Bhlhe40	ENSMUST00000137557.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A 	ENSMUST00000147025.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr8_+_85037151_85037210	0.529322	Bhlhe40	ENSMUST00000166592.1|Tnpo2|ENSMUSG00000031691.7|transportin 2 (importin 3, karyopherin beta 2b)
mm10_v2_chr4_+_134468320_134468409	0.525883	Bhlhe40	ENSMUST00000030636.4|Stmn1|ENSMUSG00000028832.5|stathmin 1 	ENSMUST00000127279.1|Stmn1|ENSMUSG00000028832.5|stathmin 1 	ENSMUST00000105867.1|Stmn1|ENSMUSG00000028832.5|stathmin 1
mm10_v2_chr11_+_49203465_49203524	0.515432	Bhlhe40	ENSMUST00000150284.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62 	ENSMUST00000109197.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62 	ENSMUST00000151228.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62
mm10_v2_chr10_-_80139347_80139370	0.500267	Bhlhe40	ENSMUST00000105369.1|Dos|ENSMUSG00000035640.12|downstream of Stk11
mm10_v2_chr11_+_75348433_75348560	0.489558	Bhlhe40	ENSMUST00000044530.2|Smyd4|ENSMUSG00000018809.2|SET and MYND domain containing 4
mm10_v2_chrX_+_68678624_68678639	0.466126	Bhlhe40	ENSMUST00000114656.1|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr7_+_128744870_128745020	0.443984	Bhlhe40	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr2_-_37703845_37703885	0.436464	Bhlhe40	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr11_+_97450136_97450180	0.434505	Bhlhe40	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr19_-_60790692_60790700	0.403693	Bhlhe40	ENSMUST00000025955.6|Eif3a|ENSMUSG00000024991.7|eukaryotic translation initiation factor 3, subunit A
mm10_v2_chr4_-_48473403_48473459	0.401846	Bhlhe40	ENSMUST00000164866.1|Tex10|ENSMUSG00000028345.9|testis expressed gene 10 	ENSMUST00000030030.8|Tex10|ENSMUSG00000028345.9|testis expressed gene 10
mm10_v2_chr17_-_12769605_12769700	0.392383	Bhlhe40	ENSMUST00000024599.7|Igf2r|ENSMUSG00000023830.7|insulin-like growth factor 2 receptor
mm10_v2_chr11_+_49203285_49203298	0.36803	Bhlhe40	ENSMUST00000109198.1|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62 	ENSMUST00000137061.2|Zfp62|ENSMUSG00000046311.7|zinc finger protein 62
mm10_v2_chr19_-_4201591_4201623	0.292933	Bhlhe40	ENSMUST00000025740.6|Rad9a|ENSMUSG00000024824.6|RAD9 homolog A
mm10_v2_chr12_+_3426857_3426931	0.280914	Bhlhe40	ENSMUST00000111215.3|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000092003.5|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000144247.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000153102.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila)
mm10_v2_chr9_-_13826946_13826972	0.271612	Bhlhe40	ENSMUST00000147115.1|Cep57|ENSMUSG00000031922.6|centrosomal protein 57
mm10_v2_chr6_-_35133731_35133742	0.23428	Bhlhe40	ENSMUST00000114993.2|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4 	ENSMUST00000114989.2|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4 	ENSMUST00000044163.6|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4
mm10_v2_chr5_-_137533170_137533204	0.232142	Bhlhe40	ENSMUST00000168746.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000170293.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr8_+_84689308_84689477	0.220358	Bhlhe40	ENSMUST00000125370.3|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1 	ENSMUST00000175784.1|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1
mm10_v2_chr5_-_137533212_137533290	0.198572	Bhlhe40	ENSMUST00000143495.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2 	ENSMUST00000111038.1|Epo|ENSMUSG00000029711.7|erythropoietin
mm10_v2_chr10_+_79854618_79854640	0.193666	Bhlhe40	ENSMUST00000165704.1|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1
mm10_v2_chr17_-_33824346_33824562	0.190357	Bhlhe40	ENSMUST00000173879.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000166693.2|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173019.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000087342.6|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173844.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28
mm10_v2_chrX_+_153832225_153832293	0.187576	Bhlhe40	ENSMUST00000148708.1|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C 	ENSMUST00000123264.1|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C 	ENSMUST00000049999.8|Spin2c|ENSMUSG00000046550.8|spindlin family, member 2C
mm10_v2_chr14_-_50924626_50924896	0.183065	Bhlhe40	ENSMUST00000160375.1|Osgep|ENSMUSG00000006289.8|O-sialoglycoprotein endopeptidase 	ENSMUST00000162177.1|Osgep|ENSMUSG00000006289.8|O-sialoglycoprotein endopeptidase 	ENSMUST00000159292.1|Osgep|ENSMUSG00000006289.8|O-sialoglycoprotein endopeptidase
mm10_v2_chr7_+_82648595_82648653	0.150911	Bhlhe40	ENSMUST00000141726.1|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1 	ENSMUST00000179489.1|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1 	ENSMUST00000039881.3|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1
mm10_v2_chr18_+_31609512_31609512	0.142522	Bhlhe40	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr5_-_72168142_72168199	0.126347	Bhlhe40	ENSMUST00000013693.6|Commd8|ENSMUSG00000029213.7|COMM domain containing 8
mm10_v2_chr19_+_29522263_29522341	0.121899	Bhlhe40	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chr5_-_135078224_135078266	0.119177	Bhlhe40	ENSMUST00000067935.4|Vps37d|ENSMUSG00000043614.7|vacuolar protein sorting 37D (yeast) 	ENSMUST00000076203.2|Vps37d|ENSMUSG00000043614.7|vacuolar protein sorting 37D (yeast)
mm10_v2_chr3_-_95106907_95106930	0.117241	Bhlhe40	ENSMUST00000107233.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr5_-_123572976_123573031	0.107156	Bhlhe40	ENSMUST00000031388.8|Vps33a|ENSMUSG00000029434.8|vacuolar protein sorting 33A (yeast)
mm10_v2_chr8_+_84689247_84689303	0.0847963	Bhlhe40	ENSMUST00000109767.2|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1 	ENSMUST00000177084.1|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1 	ENSMUST00000109768.2|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1 	ENSMUST00000152301.2|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1 	ENSMUST00000177423.1|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1
mm10_v2_chrX_+_134601271_134601286	0.084154	Bhlhe40	ENSMUST00000050331.6|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000059297.5|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chrX_+_134601179_134601266	0.0786808	Bhlhe40	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr16_+_44139821_44139900	0.0649636	Bhlhe40	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr10_+_79854658_79854674	0.0644793	Bhlhe40	ENSMUST00000171599.1|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1 	ENSMUST00000095457.4|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1
mm10_v2_chr7_-_35802968_35803007	0.0637204	Bhlhe40	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chr12_-_79296266_79296310	0.0529195	Bhlhe40	ENSMUST00000021547.6|Zfyve26|ENSMUSG00000066440.4|zinc finger, FYVE domain containing 26
mm10_v2_chr11_+_3649494_3649494	0.0515746	Bhlhe40	ENSMUST00000093389.2|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chrX_-_152327430_152327495	0.0319052	Bhlhe40	ENSMUST00000181635.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000141922.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000154085.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000148326.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000135115.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000149098.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene
mm10_v2_chr19_-_33392255_33392300	0.0241939	Bhlhe40	ENSMUST00000096114.5|Rnls|ENSMUSG00000071573.7|renalase, FAD-dependent amine oxidase 	ENSMUST00000163093.1|Rnls|ENSMUSG00000071573.7|renalase, FAD-dependent amine oxidase
mm10_v2_chr9_-_13827029_13827129	0.0117747	Bhlhe40	ENSMUST00000148086.1|Cep57|ENSMUSG00000031922.6|centrosomal protein 57 	ENSMUST00000034398.5|Cep57|ENSMUSG00000031922.6|centrosomal protein 57
mm10_v2_chr1_+_155158703_155158776	0.0111888	Bhlhe40	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr6_+_116338013_116338083	0.00618281	Bhlhe40	ENSMUST00000079012.6|March8|ENSMUSG00000025702.9|membrane-associated ring finger (C3HC4) 8 	ENSMUST00000101032.3|March8|ENSMUSG00000025702.9|membrane-associated ring finger (C3HC4) 8
mm10_v2_chr5_+_104046980_104047154	0.00364474	Bhlhe40	ENSMUST00000134313.1|Nudt9|ENSMUSG00000029310.7|nudix (nucleoside diphosphate linked moiety X)-type motif 9
