mm10_v2_chr4_-_105109829_105109913	2.37364	AUUGCAC	ENSMUST00000030243.7|Prkaa2|ENSMUSG00000028518.8|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm10_v2_chr7_+_87246649_87246661	2.22548	AUUGCAC	ENSMUST00000068829.5|Nox4|ENSMUSG00000030562.10|NADPH oxidase 4 	ENSMUST00000032781.7|Nox4|ENSMUSG00000030562.10|NADPH oxidase 4
mm10_v2_chr11_+_94211431_94211454	1.93825	AUUGCAC	ENSMUST00000041589.5|Tob1|ENSMUSG00000037573.5|transducer of ErbB-2.1
mm10_v2_chr1_-_183369529_183369529	1.91882	AUUGCAC	ENSMUST00000069922.5|Mia3|ENSMUSG00000056050.6|melanoma inhibitory activity 3
mm10_v2_chr1_-_51915968_51916071	1.91793	AUUGCAC	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr1_+_7088917_7088993	1.8315	AUUGCAC	ENSMUST00000061280.10|Pcmtd1|ENSMUSG00000051285.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 	ENSMUST00000182114.1|Pcmtd1|ENSMUSG00000051285.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm10_v2_chr6_+_56714891_56714951	1.45631	AUUGCAC	ENSMUST00000031805.8|Avl9|ENSMUSG00000029787.8|AVL9 homolog (S. cerevisiase)
mm10_v2_chr18_-_64660981_64661010	1.41669	AUUGCAC	ENSMUST00000025482.8|Atp8b1|ENSMUSG00000039529.8|ATPase, class I, type 8B, member 1
mm10_v2_chr5_+_28071356_28071372	1.3358	AUUGCAC	ENSMUST00000059155.10|Insig1|ENSMUSG00000045294.10|insulin induced gene 1
mm10_v2_chrX_-_72656135_72656199	1.32835	AUUGCAC	ENSMUST00000055966.6|Gabra3|ENSMUSG00000031343.7|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm10_v2_chr3_+_36863102_36863147	1.30922	AUUGCAC	ENSMUST00000057272.8|4932438A13Rik|ENSMUSG00000037270.11|RIKEN cDNA 4932438A13 gene
mm10_v2_chr5_-_107875035_107875107	1.30877	AUUGCAC	ENSMUST00000138111.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5 	ENSMUST00000112642.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5
mm10_v2_chr10_+_115384951_115385021	1.24519	AUUGCAC	ENSMUST00000036044.8|Zfc3h1|ENSMUSG00000034163.10|zinc finger, C3H1-type containing
mm10_v2_chr11_+_35769462_35769484	1.24348	AUUGCAC	ENSMUST00000018990.7|Pank3|ENSMUSG00000018846.8|pantothenate kinase 3
mm10_v2_chr17_+_64600702_64600739	1.23749	AUUGCAC	ENSMUST00000086723.3|Man2a1|ENSMUSG00000024085.7|mannosidase 2, alpha 1
mm10_v2_chr13_-_95891905_95891929	1.20221	AUUGCAC	ENSMUST00000068603.6|Iqgap2|ENSMUSG00000021676.9|IQ motif containing GTPase activating protein 2
mm10_v2_chr1_+_132007606_132007634	1.19623	AUUGCAC	ENSMUST00000086556.5|Elk4|ENSMUSG00000026436.9|ELK4, member of ETS oncogene family
mm10_v2_chr11_+_54438188_54438220	1.19356	AUUGCAC	ENSMUST00000046835.7|Fnip1|ENSMUSG00000035992.9|folliculin interacting protein 1
mm10_v2_chr2_+_15055274_15055379	1.18471	AUUGCAC	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr16_+_72663143_72663189	1.17614	AUUGCAC	ENSMUST00000023600.7|Robo1|ENSMUSG00000022883.10|roundabout homolog 1 (Drosophila)
mm10_v2_chr9_-_85749308_85749356	1.16337	AUUGCAC	ENSMUST00000039213.8|Ibtk|ENSMUSG00000035941.9|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm10_v2_chr8_+_35587780_35587825	1.14288	AUUGCAC	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr10_+_39732099_39732140	1.14083	AUUGCAC	ENSMUST00000019986.6|Rev3l|ENSMUSG00000019841.9|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm10_v2_chr2_-_125859139_125859221	1.14038	AUUGCAC	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr16_-_45844303_45844381	1.12676	AUUGCAC	ENSMUST00000036355.6|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr12_+_73901370_73901391	1.09373	AUUGCAC	ENSMUST00000110461.1|Hif1a|ENSMUSG00000021109.7|hypoxia inducible factor 1, alpha subunit
mm10_v2_chr2_+_55437100_55437182	1.09239	AUUGCAC	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr2_-_12301914_12301922	1.09156	AUUGCAC	ENSMUST00000028106.4|Itga8|ENSMUSG00000026768.4|integrin alpha 8
mm10_v2_chr7_-_99626936_99627103	1.08695	AUUGCAC	ENSMUST00000178124.1|Gm4980|ENSMUSG00000096606.1|predicted gene 4980
mm10_v2_chr11_+_21239279_21239302	1.08376	AUUGCAC	ENSMUST00000006221.7|Vps54|ENSMUSG00000020128.9|vacuolar protein sorting 54 (yeast) 	ENSMUST00000109578.1|Vps54|ENSMUSG00000020128.9|vacuolar protein sorting 54 (yeast)
mm10_v2_chrX_+_68821093_68821093	1.07485	AUUGCAC	ENSMUST00000096420.2|Gm14698|ENSMUSG00000071748.2|predicted gene 14698
mm10_v2_chr13_-_103920508_103920572	1.05728	AUUGCAC	ENSMUST00000053927.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000091269.4|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein 	ENSMUST00000022222.5|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr3_+_121953213_121953295	1.04102	AUUGCAC	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr1_+_138963709_138963808	1.03909	AUUGCAC	ENSMUST00000168527.1|Dennd1b|ENSMUSG00000056268.9|DENN/MADD domain containing 1B
mm10_v2_chr17_+_6106880_6106907	1.03593	AUUGCAC	ENSMUST00000149756.1|Tulp4|ENSMUSG00000034377.4|tubby like protein 4
mm10_v2_chr5_+_119670825_119670862	1.02885	AUUGCAC	ENSMUST00000121021.1|Tbx3|ENSMUSG00000018604.12|T-box 3
mm10_v2_chr3_+_41555723_41555745	1.01249	AUUGCAC	ENSMUST00000026865.8|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr13_+_13590402_13590456	1.00988	AUUGCAC	ENSMUST00000110559.1|Lyst|ENSMUSG00000019726.10|lysosomal trafficking regulator
mm10_v2_chr1_-_151428440_151428474	1.00396	AUUGCAC	ENSMUST00000064771.5|Swt1|ENSMUSG00000052748.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm10_v2_chr2_+_49451486_49451559	0.994736	AUUGCAC	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr8_+_90828820_90828842	0.988827	AUUGCAC	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr9_+_118506226_118506318	0.985513	AUUGCAC	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr1_+_65186727_65186750	0.969364	AUUGCAC	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr17_+_53566971_53567023	0.968107	AUUGCAC	ENSMUST00000000724.8|Kat2b|ENSMUSG00000000708.8|K(lysine) acetyltransferase 2B
mm10_v2_chr19_-_59345746_59345853	0.951035	AUUGCAC	ENSMUST00000099274.2|Pdzd8|ENSMUSG00000074746.2|PDZ domain containing 8
mm10_v2_chr16_-_64786321_64786321	0.94706	AUUGCAC	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr7_-_81454751_81454764	0.933824	AUUGCAC	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr4_+_21727695_21727716	0.922576	AUUGCAC	ENSMUST00000065928.4|Ccnc|ENSMUSG00000028252.14|cyclin C
mm10_v2_chr5_+_23434435_23434471	0.919859	AUUGCAC	ENSMUST00000094962.2|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E 	ENSMUST00000115128.1|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E
mm10_v2_chr4_+_83525540_83525616	0.914961	AUUGCAC	ENSMUST00000053414.6|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171 	ENSMUST00000126429.1|Ccdc171|ENSMUSG00000052407.10|coiled-coil domain containing 171
mm10_v2_chr15_+_25622525_25622558	0.910805	AUUGCAC	ENSMUST00000110457.1|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000137601.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr1_+_33719863_33719901	0.909574	AUUGCAC	ENSMUST00000088287.3|Rab23|ENSMUSG00000004768.8|RAB23, member RAS oncogene family
mm10_v2_chr5_-_66173051_66173117	0.908045	AUUGCAC	ENSMUST00000113726.1|Rbm47|ENSMUSG00000070780.5|RNA binding motif protein 47
mm10_v2_chr15_+_44619551_44619641	0.899831	AUUGCAC	ENSMUST00000022964.7|Ebag9|ENSMUSG00000022339.8|estrogen receptor-binding fragment-associated gene 9
mm10_v2_chr19_+_38836561_38836612	0.896849	AUUGCAC	ENSMUST00000037302.5|Tbc1d12|ENSMUSG00000048720.7|TBC1D12: TBC1 domain family, member 12
mm10_v2_chr5_-_100500592_100500657	0.896425	AUUGCAC	ENSMUST00000149714.1|Lin54|ENSMUSG00000035310.9|lin-54 homolog (C. elegans) 	ENSMUST00000046154.5|Lin54|ENSMUSG00000035310.9|lin-54 homolog (C. elegans)
mm10_v2_chr5_-_20882072_20882124	0.894111	AUUGCAC	ENSMUST00000118174.1|Phtf2|ENSMUSG00000039987.9|putative homeodomain transcription factor 2
mm10_v2_chr12_-_44210061_44210077	0.882664	AUUGCAC	ENSMUST00000015049.3|Dnajb9|ENSMUSG00000014905.3|DnaJ (Hsp40) homolog, subfamily B, member 9
mm10_v2_chr9_-_70141484_70141578	0.880126	AUUGCAC	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr15_-_8444449_8444506	0.878361	AUUGCAC	ENSMUST00000052965.6|Nipbl|ENSMUSG00000022141.6|Nipped-B homolog (Drosophila)
mm10_v2_chr5_+_43233463_43233491	0.872709	AUUGCAC	ENSMUST00000169035.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2 	ENSMUST00000166713.1|Cpeb2|ENSMUSG00000039782.8|cytoplasmic polyadenylation element binding protein 2
mm10_v2_chr10_+_7681197_7681225	0.855695	AUUGCAC	ENSMUST00000165952.1|Lats1|ENSMUSG00000040021.6|large tumor suppressor
mm10_v2_chr9_+_74953053_74953091	0.839034	AUUGCAC	ENSMUST00000170846.1|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr15_-_39112642_39112716	0.837185	AUUGCAC	ENSMUST00000022908.8|Slc25a32|ENSMUSG00000022299.8|solute carrier family 25, member 32
mm10_v2_chr17_+_4994904_4995074	0.832005	AUUGCAC	ENSMUST00000092723.4|Arid1b|ENSMUSG00000069729.7|AT rich interactive domain 1B (SWI-like) 	ENSMUST00000115797.2|Arid1b|ENSMUSG00000069729.7|AT rich interactive domain 1B (SWI-like)
mm10_v2_chr15_+_34082664_34082734	0.827012	AUUGCAC	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr3_-_79567679_79567764	0.824092	AUUGCAC	ENSMUST00000076136.4|Fnip2|ENSMUSG00000061175.5|folliculin interacting protein 2
mm10_v2_chr15_-_81858317_81858328	0.816352	AUUGCAC	ENSMUST00000050467.7|Tob2|ENSMUSG00000048546.7|transducer of ERBB2, 2
mm10_v2_chr6_+_34709442_34709497	0.80592	AUUGCAC	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr3_-_107696462_107696574	0.801003	AUUGCAC	ENSMUST00000029490.8|Ahcyl1|ENSMUSG00000027893.8|S-adenosylhomocysteine hydrolase-like 1
mm10_v2_chr2_+_79635352_79635410	0.781632	AUUGCAC	ENSMUST00000111785.2|Ssfa2|ENSMUSG00000027007.10|sperm specific antigen 2
mm10_v2_chr18_+_56432116_56432163	0.772886	AUUGCAC	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chr5_+_107497718_107497759	0.77239	AUUGCAC	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr12_-_98577940_98578046	0.761136	AUUGCAC	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr2_+_83724397_83724555	0.757315	AUUGCAC	ENSMUST00000028499.4|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000141725.1|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000111740.2|Itgav|ENSMUSG00000027087.5|integrin alpha V
mm10_v2_chr12_+_35047180_35047230	0.749123	AUUGCAC	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr19_-_59943647_59943678	0.748612	AUUGCAC	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr2_+_28641227_28641262	0.743684	AUUGCAC	ENSMUST00000028155.5|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113869.1|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1 	ENSMUST00000113867.2|Tsc1|ENSMUSG00000026812.10|tuberous sclerosis 1
mm10_v2_chr1_+_59764264_59764286	0.742527	AUUGCAC	ENSMUST00000087435.5|Bmpr2|ENSMUSG00000067336.5|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm10_v2_chr14_-_49066653_49066674	0.741757	AUUGCAC	ENSMUST00000162175.1|Exoc5|ENSMUSG00000061244.7|exocyst complex component 5
mm10_v2_chr14_+_45351473_45351473	0.741688	AUUGCAC	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr18_+_42275353_42275392	0.741113	AUUGCAC	ENSMUST00000046972.7|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27 	ENSMUST00000091920.5|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27
mm10_v2_chr2_-_77519565_77519647	0.733538	AUUGCAC	ENSMUST00000111830.2|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr10_+_108162358_108162408	0.724202	AUUGCAC	ENSMUST00000070663.5|Ppp1r12a|ENSMUSG00000019907.9|protein phosphatase 1, regulatory (inhibitor) subunit 12A
mm10_v2_chr11_-_35980473_35980579	0.716137	AUUGCAC	ENSMUST00000018993.6|Wwc1|ENSMUSG00000018849.6|WW, C2 and coiled-coil domain containing 1
mm10_v2_chr8_+_91070052_91070123	0.711484	AUUGCAC	ENSMUST00000034091.7|Rbl2|ENSMUSG00000031666.8|retinoblastoma-like 2
mm10_v2_chrX_-_105929397_105929408	0.709351	AUUGCAC	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr2_-_104816696_104816792	0.709341	AUUGCAC	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr2_+_96318014_96318216	0.70548	AUUGCAC	ENSMUST00000135431.1|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C 	ENSMUST00000162807.2|Lrrc4c|ENSMUSG00000050587.8|leucine rich repeat containing 4C
mm10_v2_chr17_-_42876417_42876431	0.69331	AUUGCAC	ENSMUST00000024709.7|Cd2ap|ENSMUSG00000061665.6|CD2-associated protein
mm10_v2_chr3_+_107101551_107101567	0.693293	AUUGCAC	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr8_+_88118747_88118777	0.691406	AUUGCAC	ENSMUST00000095214.3|Cnep1r1|ENSMUSG00000036810.10|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm10_v2_chr3_-_105801323_105801377	0.687676	AUUGCAC	ENSMUST00000090678.6|Rap1a|ENSMUSG00000068798.6|RAS-related protein-1a
mm10_v2_chr5_-_151190154_151190269	0.685507	AUUGCAC	ENSMUST00000062015.8|Stard13|ENSMUSG00000016128.8|StAR-related lipid transfer (START) domain containing 13 	ENSMUST00000110483.2|Stard13|ENSMUSG00000016128.8|StAR-related lipid transfer (START) domain containing 13
mm10_v2_chr6_+_97807014_97807067	0.681925	AUUGCAC	ENSMUST00000043637.7|Mitf|ENSMUSG00000035158.9|microphthalmia-associated transcription factor
mm10_v2_chr11_+_60417238_60417301	0.68152	AUUGCAC	ENSMUST00000070681.6|Gid4|ENSMUSG00000018415.8|GID complex subunit 4, VID24 homolog (S. cerevisiae)
mm10_v2_chr6_+_108828633_108828721	0.679427	AUUGCAC	ENSMUST00000089162.3|Edem1|ENSMUSG00000030104.7|ER degradation enhancer, mannosidase alpha-like 1
mm10_v2_chr13_+_43398375_43398402	0.675254	AUUGCAC	ENSMUST00000071926.3|Nol7|ENSMUSG00000063200.3|nucleolar protein 7
mm10_v2_chr14_-_67933512_67933585	0.674725	AUUGCAC	ENSMUST00000039135.4|Dock5|ENSMUSG00000044447.4|dedicator of cytokinesis 5
mm10_v2_chr1_+_179960472_179960585	0.667144	AUUGCAC	ENSMUST00000097453.2|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000111117.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr2_+_5951440_5951469	0.663624	AUUGCAC	ENSMUST00000060092.6|Upf2|ENSMUSG00000043241.8|UPF2 regulator of nonsense transcripts homolog (yeast)
mm10_v2_chr10_+_28074813_28074873	0.659537	AUUGCAC	ENSMUST00000166468.1|Ptprk|ENSMUSG00000019889.9|protein tyrosine phosphatase, receptor type, K
mm10_v2_chr1_-_190170671_190170744	0.658612	AUUGCAC	ENSMUST00000175916.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr13_-_110280103_110280213	0.640875	AUUGCAC	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr12_-_51691883_51691925	0.637981	AUUGCAC	ENSMUST00000013130.8|Strn3|ENSMUSG00000020954.9|striatin, calmodulin binding protein 3 	ENSMUST00000169503.1|Strn3|ENSMUSG00000020954.9|striatin, calmodulin binding protein 3
mm10_v2_chr17_+_55445550_55445701	0.637664	AUUGCAC	ENSMUST00000025000.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chrY_-_1286563_1286615	0.635539	AUUGCAC	ENSMUST00000091190.5|Ddx3y|ENSMUSG00000069045.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm10_v2_chr18_-_38211957_38212053	0.630473	AUUGCAC	ENSMUST00000159405.1|Pcdh1|ENSMUSG00000051375.9|protocadherin 1 	ENSMUST00000160721.1|Pcdh1|ENSMUSG00000051375.9|protocadherin 1
mm10_v2_chr1_-_155972887_155972890	0.623336	AUUGCAC	ENSMUST00000138762.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350 	ENSMUST00000124495.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350
mm10_v2_chr11_-_100472725_100472759	0.622618	AUUGCAC	ENSMUST00000056665.3|Klhl11|ENSMUSG00000048732.5|kelch-like 11
mm10_v2_chrX_+_36328353_36328418	0.618605	AUUGCAC	ENSMUST00000016383.3|Lonrf3|ENSMUSG00000016239.5|LON peptidase N-terminal domain and ring finger 3
mm10_v2_chr6_+_71493850_71493918	0.612415	AUUGCAC	ENSMUST00000064637.4|Rnf103|ENSMUSG00000052656.6|ring finger protein 103 	ENSMUST00000114178.1|Rnf103|ENSMUSG00000052656.6|ring finger protein 103
mm10_v2_chr13_-_95375329_95375369	0.604494	AUUGCAC	ENSMUST00000022189.8|Aggf1|ENSMUSG00000021681.8|angiogenic factor with G patch and FHA domains 1
mm10_v2_chr14_-_26971232_26971232	0.603823	AUUGCAC	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr8_+_111033890_111033932	0.602193	AUUGCAC	ENSMUST00000034441.7|Aars|ENSMUSG00000031960.8|alanyl-tRNA synthetase
mm10_v2_chr1_-_58586191_58586323	0.598557	AUUGCAC	ENSMUST00000038372.7|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000097724.3|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161000.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B 	ENSMUST00000161600.1|Fam126b|ENSMUSG00000038174.8|family with sequence similarity 126, member B
mm10_v2_chr13_-_93499803_93499825	0.598015	AUUGCAC	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chr17_+_86167777_86167795	0.595937	AUUGCAC	ENSMUST00000097275.2|Prkce|ENSMUSG00000045038.8|protein kinase C, epsilon
mm10_v2_chr6_+_108213086_108213123	0.595865	AUUGCAC	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr8_-_84800024_84800283	0.595638	AUUGCAC	ENSMUST00000126806.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X 	ENSMUST00000076715.6|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr2_+_160645881_160645896	0.591606	AUUGCAC	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chr16_+_24393350_24393428	0.589424	AUUGCAC	ENSMUST00000038053.6|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr12_+_71831064_71831178	0.589368	AUUGCAC	ENSMUST00000085299.2|Daam1|ENSMUSG00000034574.9|dishevelled associated activator of morphogenesis 1
mm10_v2_chr1_+_177444653_177444669	0.58892	AUUGCAC	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr19_+_3767397_3767523	0.578985	AUUGCAC	ENSMUST00000113974.4|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113972.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113973.1|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113977.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000052699.6|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113968.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm10_v2_chr2_+_25054355_25054391	0.573114	AUUGCAC	ENSMUST00000100334.4|Nsmf|ENSMUSG00000006476.13|NMDA receptor synaptonuclear signaling and neuronal migration factor 	ENSMUST00000152122.1|Nsmf|ENSMUSG00000006476.13|NMDA receptor synaptonuclear signaling and neuronal migration factor 	ENSMUST00000116574.3|Nsmf|ENSMUSG00000006476.13|NMDA receptor synaptonuclear signaling and neuronal migration factor 	ENSMUST00000006646.8|Nsmf|ENSMUSG00000006476.13|NMDA receptor synaptonuclear signaling and neuronal migration factor
mm10_v2_chr6_-_24664960_24665038	0.570974	AUUGCAC	ENSMUST00000041737.7|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human) 	ENSMUST00000031695.8|Wasl|ENSMUSG00000029684.8|Wiskott-Aldrich syndrome-like (human)
mm10_v2_chr2_-_172940299_172940349	0.568778	AUUGCAC	ENSMUST00000009143.7|Bmp7|ENSMUSG00000008999.7|bone morphogenetic protein 7
mm10_v2_chr16_+_87698904_87698959	0.567981	AUUGCAC	ENSMUST00000026703.5|Bach1|ENSMUSG00000025612.5|BTB and CNC homology 1
mm10_v2_chr11_-_21370452_21370485	0.566271	AUUGCAC	ENSMUST00000102875.4|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr5_-_3803081_3803119	0.564516	AUUGCAC	ENSMUST00000043551.6|Ankib1|ENSMUSG00000040351.7|ankyrin repeat and IBR domain containing 1
mm10_v2_chr1_+_37997975_37998010	0.563945	AUUGCAC	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr4_-_82859571_82859679	0.562812	AUUGCAC	ENSMUST00000156055.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21 	ENSMUST00000030110.8|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chrX_+_13280970_13281031	0.561936	AUUGCAC	ENSMUST00000000804.6|Ddx3x|ENSMUSG00000000787.6|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm10_v2_chr3_+_32436151_32436151	0.560417	AUUGCAC	ENSMUST00000029201.7|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr5_-_69592311_69592337	0.559968	AUUGCAC	ENSMUST00000031117.6|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr13_+_55693082_55693151	0.558626	AUUGCAC	ENSMUST00000057844.8|B230219D22Rik|ENSMUSG00000045767.8|RIKEN cDNA B230219D22 gene
mm10_v2_chr11_+_43682038_43682060	0.549101	AUUGCAC	ENSMUST00000094294.4|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr5_+_65763518_65763541	0.547559	AUUGCAC	ENSMUST00000113738.1|N4bp2|ENSMUSG00000037795.8|NEDD4 binding protein 2
mm10_v2_chr17_-_53539411_53539459	0.542157	AUUGCAC	ENSMUST00000056198.3|Pp2d1|ENSMUSG00000044957.3|protein phosphatase 2C-like domain containing 1
mm10_v2_chr13_-_81710937_81711013	0.538844	AUUGCAC	ENSMUST00000161920.1|Polr3g|ENSMUSG00000035834.5|polymerase (RNA) III (DNA directed) polypeptide G 	ENSMUST00000048993.5|Polr3g|ENSMUSG00000035834.5|polymerase (RNA) III (DNA directed) polypeptide G
mm10_v2_chr9_-_25151772_25151840	0.53496	AUUGCAC	ENSMUST00000008573.7|Herpud2|ENSMUSG00000008429.7|HERPUD family member 2
mm10_v2_chr8_-_23257009_23257031	0.532827	AUUGCAC	ENSMUST00000121783.1|Golga7|ENSMUSG00000015341.10|golgi autoantigen, golgin subfamily a, 7
mm10_v2_chr16_+_42907563_42907684	0.532179	AUUGCAC	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr13_+_24801657_24801657	0.531521	AUUGCAC	ENSMUST00000019276.4|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr18_+_77938452_77938477	0.523817	AUUGCAC	ENSMUST00000044622.5|Epg5|ENSMUSG00000039840.7|ectopic P-granules autophagy protein 5 homolog (C. elegans)
mm10_v2_chr14_+_49066495_49066587	0.51957	AUUGCAC	ENSMUST00000037473.4|Ap5m1|ENSMUSG00000036291.5|adaptor-related protein complex 5, mu 1 subunit
mm10_v2_chr8_+_65618009_65618091	0.519285	AUUGCAC	ENSMUST00000110258.1|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110256.1|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110255.1|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr16_-_46010212_46010223	0.514275	AUUGCAC	ENSMUST00000130481.1|Plcxd2|ENSMUSG00000087141.1|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm10_v2_chr2_-_39065438_39065503	0.51417	AUUGCAC	ENSMUST00000112850.2|Golga1|ENSMUSG00000026754.10|golgi autoantigen, golgin subfamily a, 1
mm10_v2_chr4_+_136469755_136469850	0.512819	AUUGCAC	ENSMUST00000170102.1|Luzp1|ENSMUSG00000001089.8|leucine zipper protein 1 	ENSMUST00000105849.2|Luzp1|ENSMUSG00000001089.8|leucine zipper protein 1 	ENSMUST00000129230.2|Luzp1|ENSMUSG00000001089.8|leucine zipper protein 1
mm10_v2_chr9_+_68653761_68653786	0.501994	AUUGCAC	ENSMUST00000034766.7|Rora|ENSMUSG00000032238.11|RAR-related orphan receptor alpha
mm10_v2_chr11_-_75422586_75422701	0.497012	AUUGCAC	ENSMUST00000138661.1|Serpinf1|ENSMUSG00000000753.9|serine (or cysteine) peptidase inhibitor, clade F, member 1 	ENSMUST00000000769.7|Serpinf1|ENSMUSG00000000753.9|serine (or cysteine) peptidase inhibitor, clade F, member 1
mm10_v2_chr7_-_105399991_105400054	0.485891	AUUGCAC	ENSMUST00000118726.1|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000074686.7|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000122327.1|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000179474.1|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2 	ENSMUST00000048079.6|Fam160a2|ENSMUSG00000044465.12|family with sequence similarity 160, member A2
mm10_v2_chr3_+_103914560_103914605	0.483484	AUUGCAC	ENSMUST00000106806.1|Rsbn1|ENSMUSG00000044098.8|rosbin, round spermatid basic protein 1
mm10_v2_chr14_+_118137101_118137178	0.479114	AUUGCAC	ENSMUST00000022728.2|Gpr180|ENSMUSG00000022131.2|G protein-coupled receptor 180
mm10_v2_chr4_+_116221633_116221661	0.476837	AUUGCAC	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr13_+_55635002_55635036	0.472034	AUUGCAC	ENSMUST00000172272.1|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENSMUST00000099479.3|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
mm10_v2_chr13_-_43480973_43481005	0.470284	AUUGCAC	ENSMUST00000144326.2|Ranbp9|ENSMUSG00000038546.8|RAN binding protein 9
mm10_v2_chr17_+_88440711_88440741	0.467556	AUUGCAC	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chrX_+_42149288_42149412	0.462234	AUUGCAC	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr11_+_53350783_53350833	0.461952	AUUGCAC	ENSMUST00000060945.5|Aff4|ENSMUSG00000049470.7|AF4/FMR2 family, member 4
mm10_v2_chr7_+_120677579_120677630	0.460011	AUUGCAC	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr1_+_187997821_187997834	0.457648	AUUGCAC	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr5_-_124425907_124425946	0.456839	AUUGCAC	ENSMUST00000065263.5|Sbno1|ENSMUSG00000038095.9|sno, strawberry notch homolog 1 (Drosophila)
mm10_v2_chr15_+_102406143_102406380	0.455709	AUUGCAC	ENSMUST00000170884.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000165924.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000163709.1|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1 	ENSMUST00000001326.6|Sp1|ENSMUSG00000001280.6|trans-acting transcription factor 1
mm10_v2_chrX_-_17572241_17572325	0.45443	AUUGCAC	ENSMUST00000176638.1|Fundc1|ENSMUSG00000025040.7|FUN14 domain containing 1 	ENSMUST00000026016.6|Fundc1|ENSMUSG00000025040.7|FUN14 domain containing 1
mm10_v2_chr9_+_65032413_65032466	0.45432	AUUGCAC	ENSMUST00000034960.6|Dpp8|ENSMUSG00000032393.8|dipeptidylpeptidase 8
mm10_v2_chrX_-_9662950_9663003	0.453041	AUUGCAC	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chr8_-_71486037_71486067	0.449244	AUUGCAC	ENSMUST00000093450.4|Ano8|ENSMUSG00000034863.7|anoctamin 8
mm10_v2_chr3_+_122245557_122245578	0.44509	AUUGCAC	ENSMUST00000029769.7|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr6_-_148212374_148212391	0.444338	AUUGCAC	ENSMUST00000136008.1|Ergic2|ENSMUSG00000030304.5|ERGIC and golgi 2 	ENSMUST00000032447.4|Ergic2|ENSMUSG00000030304.5|ERGIC and golgi 2
mm10_v2_chr1_-_170867761_170867784	0.442566	AUUGCAC	ENSMUST00000027974.6|Atf6|ENSMUSG00000026663.6|activating transcription factor 6
mm10_v2_chr14_+_27622433_27622543	0.441106	AUUGCAC	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chr19_+_32757497_32757587	0.440081	AUUGCAC	ENSMUST00000013807.7|Pten|ENSMUSG00000013663.7|phosphatase and tensin homolog
mm10_v2_chr5_+_77265454_77265549	0.437958	AUUGCAC	ENSMUST00000080359.5|Rest|ENSMUSG00000029249.9|RE1-silencing transcription factor
mm10_v2_chr18_+_57878620_57878678	0.437237	AUUGCAC	ENSMUST00000115366.2|Slc12a2|ENSMUSG00000024597.10|solute carrier family 12, member 2
mm10_v2_chr18_-_6241486_6241550	0.43301	AUUGCAC	ENSMUST00000025083.7|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr9_+_13827708_13827781	0.432926	AUUGCAC	ENSMUST00000059579.5|Fam76b|ENSMUSG00000037808.6|family with sequence similarity 76, member B
mm10_v2_chr6_+_145211134_145211222	0.432607	AUUGCAC	ENSMUST00000111725.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111726.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000039729.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111723.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111724.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111721.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111719.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5
mm10_v2_chr1_-_80340480_80340512	0.432402	AUUGCAC	ENSMUST00000163119.1|Cul3|ENSMUSG00000004364.8|cullin 3
mm10_v2_chr8_+_108714644_108714644	0.430466	AUUGCAC	ENSMUST00000043896.8|Zfhx3|ENSMUSG00000038872.8|zinc finger homeobox 3
mm10_v2_chr13_+_42052015_42052072	0.429745	AUUGCAC	ENSMUST00000060148.5|Hivep1|ENSMUSG00000021366.7|human immunodeficiency virus type I enhancer binding protein 1
mm10_v2_chr9_+_43744399_43744576	0.427326	AUUGCAC	ENSMUST00000034510.7|Pvrl1|ENSMUSG00000032012.7|poliovirus receptor-related 1
mm10_v2_chrX_-_143933204_143933311	0.425405	AUUGCAC	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr9_-_24774276_24774303	0.42231	AUUGCAC	ENSMUST00000052946.4|Tbx20|ENSMUSG00000031965.8|T-box 20 	ENSMUST00000166018.2|Tbx20|ENSMUSG00000031965.8|T-box 20
mm10_v2_chr18_-_10610124_10610144	0.420283	AUUGCAC	ENSMUST00000097670.3|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr11_+_20543307_20543336	0.419381	AUUGCAC	ENSMUST00000093292.4|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr1_+_9798123_9798216	0.415871	AUUGCAC	ENSMUST00000168907.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3 	ENSMUST00000166384.1|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr3_+_102010138_102010171	0.414557	AUUGCAC	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr1_+_131962941_131962969	0.412482	AUUGCAC	ENSMUST00000177943.1|Slc45a3|ENSMUSG00000026435.9|solute carrier family 45, member 3
mm10_v2_chr16_-_78576649_78576666	0.407172	AUUGCAC	ENSMUST00000114220.1|D16Ertd472e|ENSMUSG00000022864.7|DNA segment, Chr 16, ERATO Doi 472, expressed 	ENSMUST00000114219.1|D16Ertd472e|ENSMUSG00000022864.7|DNA segment, Chr 16, ERATO Doi 472, expressed 	ENSMUST00000114218.1|D16Ertd472e|ENSMUSG00000022864.7|DNA segment, Chr 16, ERATO Doi 472, expressed
mm10_v2_chr14_-_121797670_121797753	0.40479	AUUGCAC	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr14_-_8172986_8173003	0.398969	AUUGCAC	ENSMUST00000022268.8|Pdhb|ENSMUSG00000021748.8|pyruvate dehydrogenase (lipoamide) beta
mm10_v2_chr8_-_40634776_40634806	0.396991	AUUGCAC	ENSMUST00000048898.10|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7 	ENSMUST00000174205.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr1_+_184034381_184034437	0.39609	AUUGCAC	ENSMUST00000048655.7|Dusp10|ENSMUSG00000039384.8|dual specificity phosphatase 10
mm10_v2_chrX_-_13846508_13846591	0.393275	AUUGCAC	ENSMUST00000115436.2|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000033321.4|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000115438.3|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm10_v2_chr9_-_99140065_99140087	0.39281	AUUGCAC	ENSMUST00000035037.7|Pik3cb|ENSMUSG00000032462.8|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm10_v2_chr11_-_107470699_107470726	0.391807	AUUGCAC	ENSMUST00000103064.3|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr12_-_4477138_4477196	0.389648	AUUGCAC	ENSMUST00000085814.3|Ncoa1|ENSMUSG00000020647.9|nuclear receptor coactivator 1
mm10_v2_chr11_-_61930246_61930257	0.388108	AUUGCAC	ENSMUST00000102650.3|Akap10|ENSMUSG00000047804.9|A kinase (PRKA) anchor protein 10
mm10_v2_chr9_+_72532214_72532271	0.387545	AUUGCAC	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr5_-_128953303_128953362	0.387318	AUUGCAC	ENSMUST00000111346.1|Rimbp2|ENSMUSG00000029420.8|RIMS binding protein 2
mm10_v2_chr15_+_32920723_32920826	0.384612	AUUGCAC	ENSMUST00000022871.5|Sdc2|ENSMUSG00000022261.5|syndecan 2
mm10_v2_chr2_-_48949206_48949276	0.384408	AUUGCAC	ENSMUST00000090976.3|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000149679.1|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4 	ENSMUST00000028098.4|Orc4|ENSMUSG00000026761.6|origin recognition complex, subunit 4
mm10_v2_chr13_-_96542479_96542523	0.382463	AUUGCAC	ENSMUST00000022172.4|Polk|ENSMUSG00000021668.8|polymerase (DNA directed), kappa
mm10_v2_chr12_+_111814170_111814245	0.378833	AUUGCAC	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr2_-_73312701_73312724	0.378452	AUUGCAC	ENSMUST00000058615.9|Cir1|ENSMUSG00000041777.11|corepressor interacting with RBPJ, 1
mm10_v2_chr5_+_110176640_110176701	0.377987	AUUGCAC	ENSMUST00000112512.1|Golga3|ENSMUSG00000029502.8|golgi autoantigen, golgin subfamily a, 3
mm10_v2_chr12_+_3426857_3426931	0.377854	AUUGCAC	ENSMUST00000111215.3|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000092003.5|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000144247.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000153102.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila)
mm10_v2_chr10_-_121476248_121476275	0.375732	AUUGCAC	ENSMUST00000026902.7|Rassf3|ENSMUSG00000025795.7|Ras association (RalGDS/AF-6) domain family member 3
mm10_v2_chr13_+_54071815_54071859	0.373257	AUUGCAC	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr8_-_80739497_80739497	0.372333	AUUGCAC	ENSMUST00000043359.8|Smarca5|ENSMUSG00000031715.8|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm10_v2_chr5_-_102069905_102069940	0.372258	AUUGCAC	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr2_-_84715160_84715218	0.372129	AUUGCAC	ENSMUST00000035840.5|Zdhhc5|ENSMUSG00000034075.10|zinc finger, DHHC domain containing 5
mm10_v2_chr3_-_131344892_131344940	0.370542	AUUGCAC	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr3_+_33799791_33799955	0.369226	AUUGCAC	ENSMUST00000099153.3|Ttc14|ENSMUSG00000027677.11|tetratricopeptide repeat domain 14
mm10_v2_chr2_+_72285637_72285749	0.367505	AUUGCAC	ENSMUST00000090824.5|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK 	ENSMUST00000135469.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr10_+_111164794_111164811	0.367024	AUUGCAC	ENSMUST00000105275.1|Osbpl8|ENSMUSG00000020189.7|oxysterol binding protein-like 8 	ENSMUST00000095310.1|Osbpl8|ENSMUSG00000020189.7|oxysterol binding protein-like 8
mm10_v2_chr11_+_31872100_31872226	0.363511	AUUGCAC	ENSMUST00000020543.6|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4 	ENSMUST00000109412.2|Cpeb4|ENSMUSG00000020300.8|cytoplasmic polyadenylation element binding protein 4
mm10_v2_chr9_+_14276301_14276347	0.359378	AUUGCAC	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr3_-_115715031_115715062	0.357293	AUUGCAC	ENSMUST00000055676.2|S1pr1|ENSMUSG00000045092.7|sphingosine-1-phosphate receptor 1
mm10_v2_chrX_+_106027300_106027323	0.352041	AUUGCAC	ENSMUST00000055941.6|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr2_-_26092149_26092177	0.349498	AUUGCAC	ENSMUST00000114159.2|Nacc2|ENSMUSG00000026932.8|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm10_v2_chr19_+_60889749_60889749	0.347575	AUUGCAC	ENSMUST00000003313.8|Grk5|ENSMUSG00000003228.8|G protein-coupled receptor kinase 5
mm10_v2_chr13_+_119428888_119428960	0.343964	AUUGCAC	ENSMUST00000026520.7|Paip1|ENSMUSG00000025451.9|polyadenylate binding protein-interacting protein 1
mm10_v2_chr18_+_59175333_59175406	0.339323	AUUGCAC	ENSMUST00000080721.4|Chsy3|ENSMUSG00000058152.7|chondroitin sulfate synthase 3
mm10_v2_chr3_-_19163011_19163085	0.335581	AUUGCAC	ENSMUST00000029125.8|Armc1|ENSMUSG00000027599.8|armadillo repeat containing 1
mm10_v2_chr2_+_93642307_93642388	0.335293	AUUGCAC	ENSMUST00000042078.3|Alx4|ENSMUSG00000040310.6|aristaless-like homeobox 4 	ENSMUST00000111254.1|Alx4|ENSMUSG00000040310.6|aristaless-like homeobox 4
mm10_v2_chr5_+_108461222_108461241	0.334531	AUUGCAC	ENSMUST00000046975.5|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3 	ENSMUST00000112597.1|Pcgf3|ENSMUSG00000033623.7|polycomb group ring finger 3
mm10_v2_chr6_+_88724412_88724461	0.330898	AUUGCAC	ENSMUST00000113585.2|Mgll|ENSMUSG00000033174.11|monoglyceride lipase
mm10_v2_chr12_+_49382791_49382883	0.330158	AUUGCAC	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr6_+_4903298_4903346	0.327529	AUUGCAC	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr16_+_33380765_33380787	0.325964	AUUGCAC	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr2_-_26503814_26503836	0.325309	AUUGCAC	ENSMUST00000028288.4|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chr12_+_110889231_110889305	0.325105	AUUGCAC	ENSMUST00000169597.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2 	ENSMUST00000165978.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2
mm10_v2_chr1_-_78197112_78197134	0.324783	AUUGCAC	ENSMUST00000087086.6|Pax3|ENSMUSG00000004872.9|paired box gene 3
mm10_v2_chr15_-_12592556_12592556	0.324493	AUUGCAC	ENSMUST00000075317.5|Pdzd2|ENSMUSG00000022197.9|PDZ domain containing 2
mm10_v2_chr19_-_37207293_37207508	0.322576	AUUGCAC	ENSMUST00000132580.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000079754.4|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000136286.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126188.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3 	ENSMUST00000126781.1|Cpeb3|ENSMUSG00000039652.10|cytoplasmic polyadenylation element binding protein 3
mm10_v2_chr2_+_4718145_4718205	0.319696	AUUGCAC	ENSMUST00000056914.6|Bend7|ENSMUSG00000048186.8|BEN domain containing 7
mm10_v2_chr7_+_56050135_56050217	0.316262	AUUGCAC	ENSMUST00000076226.6|Herc2|ENSMUSG00000030451.9|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm10_v2_chr1_+_131910458_131910539	0.313138	AUUGCAC	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chrX_+_68678541_68678554	0.30482	AUUGCAC	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr9_+_35211155_35211224	0.301185	AUUGCAC	ENSMUST00000034541.5|Srpr|ENSMUSG00000032042.5|signal recognition particle receptor ('docking protein')
mm10_v2_chr3_+_34020075_34020082	0.29659	AUUGCAC	ENSMUST00000001620.8|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog 	ENSMUST00000167354.1|Fxr1|ENSMUSG00000027680.9|fragile X mental retardation gene 1, autosomal homolog
mm10_v2_chr8_+_79639618_79639730	0.29598	AUUGCAC	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr6_-_39725448_39725478	0.293183	AUUGCAC	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr4_-_126429501_126429556	0.290678	AUUGCAC	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr7_-_110844350_110844457	0.284171	AUUGCAC	ENSMUST00000177462.1|Rnf141|ENSMUSG00000030788.9|ring finger protein 141 	ENSMUST00000176746.1|Rnf141|ENSMUSG00000030788.9|ring finger protein 141 	ENSMUST00000177236.1|Rnf141|ENSMUSG00000030788.9|ring finger protein 141
mm10_v2_chr15_-_81400043_81400093	0.283567	AUUGCAC	ENSMUST00000172107.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000169204.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000163382.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13
mm10_v2_chr16_-_91011093_91011113	0.280904	AUUGCAC	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr2_-_60125651_60125775	0.280302	AUUGCAC	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr17_-_46831413_46831413	0.280021	AUUGCAC	ENSMUST00000040624.5|Gltscr1l|ENSMUSG00000036568.6|GLTSCR1-like
mm10_v2_chr1_-_124045523_124045571	0.279294	AUUGCAC	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr5_+_108065742_108065767	0.278486	AUUGCAC	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr15_-_38519227_38519271	0.274135	AUUGCAC	ENSMUST00000110328.1|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1 	ENSMUST00000110329.1|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1 	ENSMUST00000065308.5|Azin1|ENSMUSG00000037458.8|antizyme inhibitor 1
mm10_v2_chr5_-_23783700_23783711	0.267398	AUUGCAC	ENSMUST00000119946.1|Pus7|ENSMUSG00000057541.8|pseudouridylate synthase 7 homolog (S. cerevisiae)
mm10_v2_chr1_+_105990384_105990498	0.266905	AUUGCAC	ENSMUST00000119166.1|Zcchc2|ENSMUSG00000038866.9|zinc finger, CCHC domain containing 2
mm10_v2_chr6_+_122874526_122874573	0.265788	AUUGCAC	ENSMUST00000032477.4|Necap1|ENSMUSG00000030327.6|NECAP endocytosis associated 1
mm10_v2_chr17_-_10319324_10319380	0.265546	AUUGCAC	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr4_-_141723401_141723436	0.263957	AUUGCAC	ENSMUST00000102484.4|Ddi2|ENSMUSG00000078515.3|DNA-damage inducible protein 2 	ENSMUST00000177592.1|Rsc1a1|ENSMUSG00000040715.11|regulatory solute carrier protein, family 1, member 1
mm10_v2_chr18_-_88894322_88894371	0.262733	AUUGCAC	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr18_-_46198810_46198824	0.261937	AUUGCAC	ENSMUST00000167364.1|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr1_+_133246092_133246099	0.261861	AUUGCAC	ENSMUST00000038295.8|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6 	ENSMUST00000105082.2|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6
mm10_v2_chr15_-_96699698_96699717	0.260475	AUUGCAC	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr3_-_133544390_133544412	0.259987	AUUGCAC	ENSMUST00000098603.3|Tet2|ENSMUSG00000040943.8|tet methylcytosine dioxygenase 2
mm10_v2_chr5_-_122502192_122502244	0.257132	AUUGCAC	ENSMUST00000179939.1|Atp2a2|ENSMUSG00000029467.9|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 	ENSMUST00000177974.1|Atp2a2|ENSMUSG00000029467.9|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 	ENSMUST00000031423.8|Atp2a2|ENSMUSG00000029467.9|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm10_v2_chr2_+_82053222_82053311	0.253312	AUUGCAC	ENSMUST00000047527.7|Zfp804a|ENSMUSG00000070866.4|zinc finger protein 804A
mm10_v2_chr10_-_81427114_81427187	0.253174	AUUGCAC	ENSMUST00000078185.7|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000020461.8|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000105321.3|Nfic|ENSMUSG00000055053.11|nuclear factor I/C
mm10_v2_chr14_+_11553523_11553542	0.247902	AUUGCAC	ENSMUST00000022264.6|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr11_-_86544754_86544805	0.245396	AUUGCAC	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr15_+_81400132_81400215	0.243496	AUUGCAC	ENSMUST00000163754.1|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative 	ENSMUST00000041609.4|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
mm10_v2_chr19_-_47464406_47464450	0.233133	AUUGCAC	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr9_-_119322421_119322449	0.232176	AUUGCAC	ENSMUST00000040853.4|Oxsr1|ENSMUSG00000036737.6|oxidative-stress responsive 1
mm10_v2_chr1_+_134709293_134709318	0.22989	AUUGCAC	ENSMUST00000121990.1|Syt2|ENSMUSG00000026452.9|synaptotagmin II
mm10_v2_chr12_-_4738375_4738388	0.228991	AUUGCAC	ENSMUST00000111154.2|Fam228a|ENSMUSG00000079177.2|family with sequence similarity 228, member A
mm10_v2_chr18_+_11052487_11052510	0.227406	AUUGCAC	ENSMUST00000047762.7|Gata6|ENSMUSG00000005836.8|GATA binding protein 6
mm10_v2_chr9_+_118478344_118478451	0.226412	AUUGCAC	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr13_-_58113592_58113620	0.218238	AUUGCAC	ENSMUST00000160860.1|Klhl3|ENSMUSG00000014164.8|kelch-like 3
mm10_v2_chr19_+_57361009_57361113	0.217988	AUUGCAC	ENSMUST00000036407.4|Fam160b1|ENSMUSG00000033478.4|family with sequence similarity 160, member B1
mm10_v2_chr11_+_51763682_51763749	0.21711	AUUGCAC	ENSMUST00000020653.5|Sar1b|ENSMUSG00000020386.5|SAR1 gene homolog B (S. cerevisiae)
mm10_v2_chr12_+_111039334_111039400	0.215305	AUUGCAC	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr19_+_29522263_29522341	0.212769	AUUGCAC	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chr11_+_95712673_95712673	0.210064	AUUGCAC	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr4_+_124802543_124802678	0.208542	AUUGCAC	ENSMUST00000138807.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000030723.2|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1 	ENSMUST00000175875.1|Mtf1|ENSMUSG00000028890.7|metal response element binding transcription factor 1
mm10_v2_chr13_-_45964964_45965001	0.208243	AUUGCAC	ENSMUST00000180110.1|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000091628.3|Atxn1|ENSMUSG00000046876.9|ataxin 1 	ENSMUST00000167708.2|Atxn1|ENSMUSG00000046876.9|ataxin 1
mm10_v2_chr11_-_78697370_78697475	0.206316	AUUGCAC	ENSMUST00000142739.1|Nlk|ENSMUSG00000017376.9|nemo like kinase
mm10_v2_chr14_-_103346765_103346841	0.205797	AUUGCAC	ENSMUST00000159855.1|Mycbp2|ENSMUSG00000033004.8|MYC binding protein 2
mm10_v2_chr7_-_74554474_74554681	0.200423	AUUGCAC	ENSMUST00000134539.1|Slco3a1|ENSMUSG00000025790.8|solute carrier organic anion transporter family, member 3a1 	ENSMUST00000026897.7|Slco3a1|ENSMUSG00000025790.8|solute carrier organic anion transporter family, member 3a1 	ENSMUST00000098371.2|Slco3a1|ENSMUSG00000025790.8|solute carrier organic anion transporter family, member 3a1
mm10_v2_chr6_-_116193426_116193501	0.197819	AUUGCAC	ENSMUST00000088896.3|Tmcc1|ENSMUSG00000030126.11|transmembrane and coiled coil domains 1
mm10_v2_chr2_-_63184253_63184292	0.197253	AUUGCAC	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr8_+_88199194_88199224	0.187016	AUUGCAC	ENSMUST00000119033.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000066748.3|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000118952.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5
mm10_v2_chr4_-_138913915_138913983	0.185655	AUUGCAC	ENSMUST00000097830.3|Otud3|ENSMUSG00000041161.8|OTU domain containing 3
mm10_v2_chr12_+_40446050_40446099	0.182012	AUUGCAC	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr1_+_64532790_64532815	0.181462	AUUGCAC	ENSMUST00000049932.5|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000087366.4|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000171164.1|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1
mm10_v2_chr9_-_108263887_108263965	0.179019	AUUGCAC	ENSMUST00000166905.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1 	ENSMUST00000080435.2|Dag1|ENSMUSG00000039952.9|dystroglycan 1
mm10_v2_chr14_-_100149764_100149764	0.176585	AUUGCAC	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr5_+_123142187_123142229	0.171151	AUUGCAC	ENSMUST00000174836.1|Setd1b|ENSMUSG00000038384.10|SET domain containing 1B 	ENSMUST00000163030.2|Setd1b|ENSMUSG00000038384.10|SET domain containing 1B
mm10_v2_chr6_+_14901344_14901364	0.168571	AUUGCAC	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr4_+_86053887_86053987	0.16771	AUUGCAC	ENSMUST00000107178.2|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000048885.5|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000141889.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000120678.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1
mm10_v2_chr11_+_77686155_77686179	0.167707	AUUGCAC	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr17_+_71781947_71781947	0.166308	AUUGCAC	ENSMUST00000024854.7|Clip4|ENSMUSG00000024059.9|CAP-GLY domain containing linker protein family, member 4
mm10_v2_chr4_+_97777606_97777632	0.166161	AUUGCAC	ENSMUST00000075448.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000092532.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr2_+_71786923_71786978	0.164268	AUUGCAC	ENSMUST00000112101.1|Itga6|ENSMUSG00000027111.9|integrin alpha 6 	ENSMUST00000028522.3|Itga6|ENSMUSG00000027111.9|integrin alpha 6
mm10_v2_chr11_-_55607733_55607822	0.163274	AUUGCAC	ENSMUST00000108853.1|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit 	ENSMUST00000075603.4|Glra1|ENSMUSG00000000263.9|glycine receptor, alpha 1 subunit
mm10_v2_chr16_+_93832121_93832308	0.162227	AUUGCAC	ENSMUST00000044068.6|Morc3|ENSMUSG00000039456.6|microrchidia 3
mm10_v2_chr11_-_51857624_51857686	0.160546	AUUGCAC	ENSMUST00000020655.7|Phf15|ENSMUSG00000020387.9|PHD finger protein 15 	ENSMUST00000109090.1|Phf15|ENSMUSG00000020387.9|PHD finger protein 15
mm10_v2_chr15_-_93275151_93275178	0.15798	AUUGCAC	ENSMUST00000057896.4|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1 	ENSMUST00000049484.6|Gxylt1|ENSMUSG00000036197.9|glucoside xylosyltransferase 1
mm10_v2_chr10_-_13553139_13553153	0.157153	AUUGCAC	ENSMUST00000019945.8|Pex3|ENSMUSG00000019809.10|peroxisomal biogenesis factor 3 	ENSMUST00000170376.1|Pex3|ENSMUSG00000019809.10|peroxisomal biogenesis factor 3
mm10_v2_chr12_+_73964481_73964542	0.155341	AUUGCAC	ENSMUST00000021532.4|Snapc1|ENSMUSG00000021113.4|small nuclear RNA activating complex, polypeptide 1
mm10_v2_chr7_+_35334175_35334331	0.154146	AUUGCAC	ENSMUST00000032705.6|Rhpn2|ENSMUSG00000030494.7|rhophilin, Rho GTPase binding protein 2 	ENSMUST00000085556.3|Rhpn2|ENSMUSG00000030494.7|rhophilin, Rho GTPase binding protein 2
mm10_v2_chr13_-_98815408_98815449	0.152906	AUUGCAC	ENSMUST00000040340.8|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000099277.4|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000179563.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2 	ENSMUST00000109403.1|Fcho2|ENSMUSG00000041685.9|FCH domain only 2
mm10_v2_chr2_-_181592733_181592803	0.152378	AUUGCAC	ENSMUST00000108789.2|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B 	ENSMUST00000153998.1|Znf512b|ENSMUSG00000000823.10|zinc finger protein 512B
mm10_v2_chr10_-_128645965_128645991	0.151736	AUUGCAC	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr2_-_147085445_147085483	0.150338	AUUGCAC	ENSMUST00000067020.2|Nkx2-4|ENSMUSG00000054160.2|NK2 homeobox 4
mm10_v2_chr18_+_75367529_75367561	0.150052	AUUGCAC	ENSMUST00000026999.3|Smad7|ENSMUSG00000025880.5|SMAD family member 7
mm10_v2_chr6_-_37442095_37442154	0.14724	AUUGCAC	ENSMUST00000041093.5|Creb3l2|ENSMUSG00000038648.5|cAMP responsive element binding protein 3-like 2
mm10_v2_chr2_-_35200923_35201120	0.143904	AUUGCAC	ENSMUST00000028238.8|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family 	ENSMUST00000113025.1|Rab14|ENSMUSG00000026878.10|RAB14, member RAS oncogene family
mm10_v2_chr5_+_130448801_130448830	0.141683	AUUGCAC	ENSMUST00000111288.2|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr8_+_117157972_117158137	0.13962	AUUGCAC	ENSMUST00000064488.4|Gan|ENSMUSG00000052557.5|giant axonal neuropathy 	ENSMUST00000162997.1|Gan|ENSMUSG00000052557.5|giant axonal neuropathy
mm10_v2_chr1_+_93803945_93803998	0.139458	AUUGCAC	ENSMUST00000027505.6|Ing5|ENSMUSG00000026283.7|inhibitor of growth family, member 5
mm10_v2_chr6_+_30401866_30401965	0.138945	AUUGCAC	ENSMUST00000068240.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10 	ENSMUST00000068259.6|Klhdc10|ENSMUSG00000029775.8|kelch domain containing 10
mm10_v2_chr9_+_70678950_70679010	0.137679	AUUGCAC	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr15_-_53346118_53346169	0.137631	AUUGCAC	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr2_-_130840091_130840150	0.137213	AUUGCAC	ENSMUST00000044766.8|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000138990.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000120316.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene 	ENSMUST00000110243.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr11_-_94677404_94677515	0.134951	AUUGCAC	ENSMUST00000116349.2|Xylt2|ENSMUSG00000020868.9|xylosyltransferase II
mm10_v2_chr18_-_77713978_77714010	0.133314	AUUGCAC	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr15_+_92051153_92051170	0.13225	AUUGCAC	ENSMUST00000169825.1|Cntn1|ENSMUSG00000055022.8|contactin 1
mm10_v2_chr12_-_59219725_59219776	0.13177	AUUGCAC	ENSMUST00000043204.7|Fbxo33|ENSMUSG00000035329.7|F-box protein 33
mm10_v2_chr19_+_41911851_41911874	0.130587	AUUGCAC	ENSMUST00000011896.6|Pgam1|ENSMUSG00000011752.6|phosphoglycerate mutase 1
mm10_v2_chr18_-_12236301_12236405	0.128311	AUUGCAC	ENSMUST00000025279.5|Npc1|ENSMUSG00000024413.7|Niemann Pick type C1
mm10_v2_chr13_-_54687696_54687809	0.126999	AUUGCAC	ENSMUST00000177950.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000146931.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr4_+_48124903_48124938	0.12498	AUUGCAC	ENSMUST00000107721.1|Stx17|ENSMUSG00000061455.7|syntaxin 17 	ENSMUST00000153502.1|Stx17|ENSMUSG00000061455.7|syntaxin 17 	ENSMUST00000107720.2|Stx17|ENSMUSG00000061455.7|syntaxin 17 	ENSMUST00000064765.4|Stx17|ENSMUSG00000061455.7|syntaxin 17
mm10_v2_chr19_-_41385070_41385086	0.121033	AUUGCAC	ENSMUST00000059672.7|Pik3ap1|ENSMUSG00000025017.9|phosphoinositide-3-kinase adaptor protein 1
mm10_v2_chr3_+_22076644_22076681	0.120973	AUUGCAC	ENSMUST00000063988.8|Tbl1xr1|ENSMUSG00000027630.8|transducin (beta)-like 1X-linked receptor 1
mm10_v2_chr16_-_5049882_5049910	0.120079	AUUGCAC	ENSMUST00000023189.7|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis) 	ENSMUST00000115844.1|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis)
mm10_v2_chr6_+_113077354_113077382	0.117837	AUUGCAC	ENSMUST00000042889.5|Setd5|ENSMUSG00000034269.6|SET domain containing 5
mm10_v2_chr11_+_77763246_77763339	0.117352	AUUGCAC	ENSMUST00000108375.2|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr15_+_80287234_80287252	0.117146	AUUGCAC	ENSMUST00000160424.1|Cacna1i|ENSMUSG00000022416.9|calcium channel, voltage-dependent, alpha 1I subunit
mm10_v2_chr7_-_45717919_45718002	0.116616	AUUGCAC	ENSMUST00000107737.2|Sphk2|ENSMUSG00000057342.7|sphingosine kinase 2
mm10_v2_chr3_+_51415986_51416044	0.112484	AUUGCAC	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr14_+_14012491_14012693	0.10958	AUUGCAC	ENSMUST00000022257.2|Atxn7|ENSMUSG00000021738.4|ataxin 7
mm10_v2_chr19_+_3851797_3851811	0.108224	AUUGCAC	ENSMUST00000072055.6|Chka|ENSMUSG00000024843.9|choline kinase alpha
mm10_v2_chr2_+_21367532_21367542	0.107182	AUUGCAC	ENSMUST00000055946.7|Gpr158|ENSMUSG00000045967.11|G protein-coupled receptor 158
mm10_v2_chr6_+_110645572_110645588	0.1062	AUUGCAC	ENSMUST00000071076.6|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7 	ENSMUST00000172951.1|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7
mm10_v2_chr5_+_105699945_105700041	0.10543	AUUGCAC	ENSMUST00000060531.9|Lrrc8d|ENSMUSG00000046079.10|leucine rich repeat containing 8D
mm10_v2_chr10_-_118868903_118868903	0.105142	AUUGCAC	ENSMUST00000004281.8|Dyrk2|ENSMUSG00000028630.8|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm10_v2_chr4_+_63215402_63215435	0.102528	AUUGCAC	ENSMUST00000036300.6|Col27a1|ENSMUSG00000045672.9|collagen, type XXVII, alpha 1
mm10_v2_chr15_-_28025834_28025879	0.0927543	AUUGCAC	ENSMUST00000090247.5|Trio|ENSMUSG00000022263.9|triple functional domain (PTPRF interacting)
mm10_v2_chr8_+_9977707_9977725	0.0898369	AUUGCAC	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr2_-_23572038_23572112	0.0864306	AUUGCAC	ENSMUST00000132484.1|Spopl|ENSMUSG00000026771.8|speckle-type POZ protein-like
mm10_v2_chr14_-_74947865_74947883	0.0848061	AUUGCAC	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr6_-_126645784_126645801	0.0832498	AUUGCAC	ENSMUST00000055168.3|Kcna1|ENSMUSG00000047976.3|potassium voltage-gated channel, shaker-related subfamily, member 1
mm10_v2_chr6_-_137649211_137649294	0.0812883	AUUGCAC	ENSMUST00000134630.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000058210.6|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000111878.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr5_-_92083455_92083557	0.080401	AUUGCAC	ENSMUST00000169094.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2 	ENSMUST00000167918.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2
mm10_v2_chr11_-_103954015_103954056	0.0798269	AUUGCAC	ENSMUST00000103075.4|Nsf|ENSMUSG00000034187.12|N-ethylmaleimide sensitive fusion protein
mm10_v2_chr9_+_48985358_48985451	0.0791787	AUUGCAC	ENSMUST00000047349.6|Usp28|ENSMUSG00000032267.7|ubiquitin specific peptidase 28
mm10_v2_chr16_-_91171401_91171401	0.0768745	AUUGCAC	ENSMUST00000068783.2|Gm9881|ENSMUSG00000052471.2|predicted gene 9881
mm10_v2_chr4_+_21848039_21848077	0.0767748	AUUGCAC	ENSMUST00000098238.2|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18 	ENSMUST00000108229.1|Sfrs18|ENSMUSG00000028248.9|serine/arginine-rich splicing factor 18
mm10_v2_chr7_+_35119285_35119301	0.0739681	AUUGCAC	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr17_-_24644933_24644976	0.0718539	AUUGCAC	ENSMUST00000019684.5|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr11_-_4947991_4948064	0.0698711	AUUGCAC	ENSMUST00000093369.4|Nefh|ENSMUSG00000020396.8|neurofilament, heavy polypeptide
mm10_v2_chr12_+_56695628_56695700	0.0667178	AUUGCAC	ENSMUST00000001538.9|Pax9|ENSMUSG00000001497.12|paired box gene 9
mm10_v2_chr11_-_102556122_102556199	0.0648472	AUUGCAC	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr5_-_23616528_23616597	0.0638151	AUUGCAC	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr19_-_6992478_6992524	0.062229	AUUGCAC	ENSMUST00000025915.5|Dnajc4|ENSMUSG00000024963.5|DnaJ (Hsp40) homolog, subfamily C, member 4
mm10_v2_chr15_-_77842133_77842175	0.062164	AUUGCAC	ENSMUST00000016771.6|Myh9|ENSMUSG00000022443.10|myosin, heavy polypeptide 9, non-muscle
mm10_v2_chr7_+_34912379_34912415	0.0618232	AUUGCAC	ENSMUST00000075068.7|Pepd|ENSMUSG00000063931.8|peptidase D
mm10_v2_chr9_+_75071148_75071228	0.0612582	AUUGCAC	ENSMUST00000123128.1|Myo5a|ENSMUSG00000034593.10|myosin VA
mm10_v2_chr14_+_69555377_69555481	0.060998	AUUGCAC	ENSMUST00000185072.1|Gm21685|ENSMUSG00000022066.10|predicted gene, 21685 	ENSMUST00000168356.1|Gm21685|ENSMUSG00000022066.10|predicted gene, 21685 	ENSMUST00000064846.7|Gm21685|ENSMUSG00000022066.10|predicted gene, 21685
mm10_v2_chr9_-_106656081_106656109	0.0605311	AUUGCAC	ENSMUST00000023959.7|Grm2|ENSMUSG00000023192.7|glutamate receptor, metabotropic 2
mm10_v2_chr13_-_14523178_14523226	0.0604807	AUUGCAC	ENSMUST00000110516.2|Hecw1|ENSMUSG00000021301.8|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr6_-_24956106_24956131	0.0513873	AUUGCAC	ENSMUST00000127247.2|Tmem229a|ENSMUSG00000048022.10|transmembrane protein 229A
mm10_v2_chr2_-_104494400_104494463	0.0496514	AUUGCAC	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr1_-_16619437_16619489	0.0487859	AUUGCAC	ENSMUST00000117146.1|Ube2w|ENSMUSG00000025939.11|ubiquitin-conjugating enzyme E2W (putative)
mm10_v2_chr2_-_120404058_120404092	0.0482631	AUUGCAC	ENSMUST00000090042.5|Tmem87a|ENSMUSG00000033808.10|transmembrane protein 87A 	ENSMUST00000110729.1|Tmem87a|ENSMUSG00000033808.10|transmembrane protein 87A 	ENSMUST00000090046.5|Tmem87a|ENSMUSG00000033808.10|transmembrane protein 87A
mm10_v2_chr14_-_47568427_47568436	0.0479732	AUUGCAC	ENSMUST00000042988.6|Atg14|ENSMUSG00000037526.6|autophagy related 14
mm10_v2_chr1_+_131827977_131828019	0.0471882	AUUGCAC	ENSMUST00000086559.6|Slc41a1|ENSMUSG00000013275.9|solute carrier family 41, member 1
mm10_v2_chr10_+_59879556_59879613	0.0446672	AUUGCAC	ENSMUST00000147914.1|Dnajb12|ENSMUSG00000020109.7|DnaJ (Hsp40) homolog, subfamily B, member 12 	ENSMUST00000146590.1|Dnajb12|ENSMUSG00000020109.7|DnaJ (Hsp40) homolog, subfamily B, member 12
mm10_v2_chr17_+_74489492_74489575	0.0445801	AUUGCAC	ENSMUST00000024873.6|Yipf4|ENSMUSG00000024072.8|Yip1 domain family, member 4
mm10_v2_chrX_+_120290259_120290403	0.0377442	AUUGCAC	ENSMUST00000113358.3|Pcdh11x|ENSMUSG00000034755.12|protocadherin 11 X-linked 	ENSMUST00000050239.9|Pcdh11x|ENSMUSG00000034755.12|protocadherin 11 X-linked 	ENSMUST00000113364.3|Pcdh11x|ENSMUSG00000034755.12|protocadherin 11 X-linked
mm10_v2_chr4_+_106911470_106911511	0.0363334	AUUGCAC	ENSMUST00000030367.8|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000149926.1|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chr15_+_79108911_79108982	0.0354775	AUUGCAC	ENSMUST00000040320.8|Micall1|ENSMUSG00000033039.9|microtubule associated monooxygenase, calponin and LIM domain containing -like 1
mm10_v2_chr13_-_98891036_98891063	0.0332239	AUUGCAC	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr18_-_72351029_72351073	0.0317293	AUUGCAC	ENSMUST00000114943.3|Dcc|ENSMUSG00000060534.9|deleted in colorectal carcinoma
mm10_v2_chr2_-_113217051_113217094	0.0311565	AUUGCAC	ENSMUST00000080673.5|Ryr3|ENSMUSG00000057378.8|ryanodine receptor 3
mm10_v2_chr14_-_57746044_57746144	0.0311276	AUUGCAC	ENSMUST00000173990.1|Lats2|ENSMUSG00000021959.9|large tumor suppressor 2 	ENSMUST00000022531.7|Lats2|ENSMUSG00000021959.9|large tumor suppressor 2
mm10_v2_chr9_-_83806241_83806260	0.0302629	AUUGCAC	ENSMUST00000034796.7|Elovl4|ENSMUSG00000032262.7|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
mm10_v2_chr1_-_143776973_143777068	0.0300429	AUUGCAC	ENSMUST00000159879.1|Trove2|ENSMUSG00000018199.8|TROVE domain family, member 2
mm10_v2_chr4_-_72200833_72200928	0.0289399	AUUGCAC	ENSMUST00000102848.2|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000072695.6|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000107337.1|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl) 	ENSMUST00000074216.7|Tle1|ENSMUSG00000008305.12|transducin-like enhancer of split 1, homolog of Drosophila E(spl)
mm10_v2_chr8_+_107436355_107436421	0.024005	AUUGCAC	ENSMUST00000166615.1|Wwp2|ENSMUSG00000031930.10|WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chr13_-_40733768_40733836	0.0232442	AUUGCAC	ENSMUST00000110193.2|Tfap2a|ENSMUSG00000021359.9|transcription factor AP-2, alpha
mm10_v2_chr11_-_74724670_74724702	0.0221979	AUUGCAC	ENSMUST00000021091.8|Pafah1b1|ENSMUSG00000020745.9|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm10_v2_chr1_+_143640664_143640751	0.0210978	AUUGCAC	ENSMUST00000038252.2|B3galt2|ENSMUSG00000033849.2|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm10_v2_chr4_+_80910646_80910685	0.0178433	AUUGCAC	ENSMUST00000055922.3|Lurap1l|ENSMUSG00000048706.3|leucine rich adaptor protein 1-like
mm10_v2_chr5_-_108549934_108550024	0.0167289	AUUGCAC	ENSMUST00000129040.1|Cplx1|ENSMUSG00000033615.9|complexin 1 	ENSMUST00000046892.9|Cplx1|ENSMUSG00000033615.9|complexin 1
mm10_v2_chr1_+_74236479_74236598	0.0121388	AUUGCAC	ENSMUST00000113820.2|Arpc2|ENSMUSG00000006304.8|actin related protein 2/3 complex, subunit 2 	ENSMUST00000006467.7|Arpc2|ENSMUSG00000006304.8|actin related protein 2/3 complex, subunit 2 	ENSMUST00000113819.1|Arpc2|ENSMUSG00000006304.8|actin related protein 2/3 complex, subunit 2
mm10_v2_chr7_+_82335732_82335732	0.0109611	AUUGCAC	ENSMUST00000173287.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr6_+_21215472_21215503	0.00608974	AUUGCAC	ENSMUST00000081542.5|Kcnd2|ENSMUSG00000060882.5|potassium voltage-gated channel, Shal-related family, member 2
mm10_v2_chr5_+_138754514_138754607	0.00245442	AUUGCAC	ENSMUST00000026972.7|Fam20c|ENSMUSG00000025854.9|family with sequence similarity 20, member C
