mm10_v2_chr2_+_102658640_102658669	1.34044	ACUGCAU	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr6_-_23839420_23839487	0.969353	ACUGCAU	ENSMUST00000115358.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000163871.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2
mm10_v2_chr4_+_40722912_40723001	0.55892	ACUGCAU	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr5_+_88886809_88886825	0.447314	ACUGCAU	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chrX_-_51018011_51018032	0.411811	ACUGCAU	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr1_-_190170671_190170744	0.40357	ACUGCAU	ENSMUST00000175916.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr16_-_57754707_57754737	0.401514	ACUGCAU	ENSMUST00000089332.4|Col8a1|ENSMUSG00000068196.4|collagen, type VIII, alpha 1
mm10_v2_chr19_-_21472552_21472672	0.375149	ACUGCAU	ENSMUST00000087600.3|Gda|ENSMUSG00000058624.6|guanine deaminase
mm10_v2_chr11_+_62281457_62281495	0.372027	ACUGCAU	ENSMUST00000101075.4|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19 	ENSMUST00000050646.6|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19
mm10_v2_chr12_+_40446050_40446099	0.358559	ACUGCAU	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chrX_-_162643629_162643665	0.351808	ACUGCAU	ENSMUST00000112334.1|Reps2|ENSMUSG00000040855.9|RALBP1 associated Eps domain containing protein 2
mm10_v2_chr3_-_75956888_75956959	0.34223	ACUGCAU	ENSMUST00000038563.7|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000167078.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000117242.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4
mm10_v2_chr2_+_132846638_132846708	0.329722	ACUGCAU	ENSMUST00000028835.6|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000110122.3|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr14_-_122983211_122983283	0.327196	ACUGCAU	ENSMUST00000037726.7|Tmtc4|ENSMUSG00000041594.11|transmembrane and tetratricopeptide repeat containing 4
mm10_v2_chr7_+_132931142_132931155	0.32467	ACUGCAU	ENSMUST00000106157.1|Zranb1|ENSMUSG00000030967.7|zinc finger, RAN-binding domain containing 1
mm10_v2_chr6_+_34709442_34709497	0.313354	ACUGCAU	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr19_+_18670780_18670810	0.310416	ACUGCAU	ENSMUST00000025632.9|2410127L17Rik|ENSMUSG00000024726.9|RIKEN cDNA 2410127L17 gene
mm10_v2_chr5_-_148552783_148552843	0.304192	ACUGCAU	ENSMUST00000079324.7|Ubl3|ENSMUSG00000001687.9|ubiquitin-like 3 	ENSMUST00000164904.1|Ubl3|ENSMUSG00000001687.9|ubiquitin-like 3
mm10_v2_chr9_-_107231816_107231909	0.303468	ACUGCAU	ENSMUST00000044532.4|Dock3|ENSMUSG00000039716.6|dedicator of cyto-kinesis 3
mm10_v2_chr18_-_46525940_46525999	0.296426	ACUGCAU	ENSMUST00000036226.5|Fem1c|ENSMUSG00000033319.5|fem-1 homolog c (C.elegans)
mm10_v2_chrX_-_103981242_103981287	0.285093	ACUGCAU	ENSMUST00000121153.1|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting 	ENSMUST00000070705.4|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting
mm10_v2_chr15_-_96699698_96699717	0.281692	ACUGCAU	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr10_+_4611971_4612021	0.28068	ACUGCAU	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr2_+_6322621_6322667	0.27561	ACUGCAU	ENSMUST00000114937.1|Usp6nl|ENSMUSG00000039046.9|USP6 N-terminal like
mm10_v2_chr11_-_6475992_6476102	0.27149	ACUGCAU	ENSMUST00000179343.1|Purb|ENSMUSG00000094483.1|purine rich element binding protein B
mm10_v2_chr6_-_35539765_35539888	0.271456	ACUGCAU	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr19_-_41263931_41264008	0.266117	ACUGCAU	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr6_-_99666762_99666786	0.265938	ACUGCAU	ENSMUST00000032151.2|Eif4e3|ENSMUSG00000093661.1|eukaryotic translation initiation factor 4E member 3
mm10_v2_chr1_-_164458345_164458363	0.265769	ACUGCAU	ENSMUST00000027863.7|Atp1b1|ENSMUSG00000026576.7|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm10_v2_chr17_+_3326552_3326585	0.26559	ACUGCAU	ENSMUST00000169838.1|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr14_+_101729907_101729958	0.263196	ACUGCAU	ENSMUST00000100337.3|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr7_-_98309471_98309538	0.246361	ACUGCAU	ENSMUST00000033020.7|Acer3|ENSMUSG00000030760.8|alkaline ceramidase 3
mm10_v2_chr3_-_69127098_69127113	0.243563	ACUGCAU	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr1_+_187997821_187997834	0.236628	ACUGCAU	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr1_-_16519284_16519336	0.229915	ACUGCAU	ENSMUST00000162751.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000027052.6|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000149320.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr3_-_84582476_84582534	0.2293	ACUGCAU	ENSMUST00000107687.2|Arfip1|ENSMUSG00000074513.3|ADP-ribosylation factor interacting protein 1 	ENSMUST00000098990.3|Arfip1|ENSMUSG00000074513.3|ADP-ribosylation factor interacting protein 1
mm10_v2_chr2_+_122028544_122028563	0.218352	ACUGCAU	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr5_-_51553896_51553921	0.216661	ACUGCAU	ENSMUST00000132734.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr16_+_42907563_42907684	0.214331	ACUGCAU	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr13_+_55693082_55693151	0.207585	ACUGCAU	ENSMUST00000057844.8|B230219D22Rik|ENSMUSG00000045767.8|RIKEN cDNA B230219D22 gene
mm10_v2_chr7_+_128523576_128523598	0.202607	ACUGCAU	ENSMUST00000033136.7|Bag3|ENSMUSG00000030847.7|BCL2-associated athanogene 3
mm10_v2_chr9_-_65908676_65908798	0.198358	ACUGCAU	ENSMUST00000119245.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000134338.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000179395.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4
mm10_v2_chr7_-_90457167_90457229	0.1914	ACUGCAU	ENSMUST00000032844.5|Tmem126a|ENSMUSG00000030615.5|transmembrane protein 126A
mm10_v2_chr2_-_64097994_64098023	0.184874	ACUGCAU	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr4_+_57637816_57637846	0.184542	ACUGCAU	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr3_+_108537523_108537583	0.17597	ACUGCAU	ENSMUST00000029485.5|1700013F07Rik|ENSMUSG00000027886.7|RIKEN cDNA 1700013F07 gene
mm10_v2_chr11_-_50841546_50841552	0.175133	ACUGCAU	ENSMUST00000109133.1|Zfp879|ENSMUSG00000044296.4|zinc finger protein 879 	ENSMUST00000109134.1|Zfp879|ENSMUSG00000044296.4|zinc finger protein 879 	ENSMUST00000049625.1|Zfp879|ENSMUSG00000044296.4|zinc finger protein 879
mm10_v2_chr5_-_100500592_100500657	0.174043	ACUGCAU	ENSMUST00000149714.1|Lin54|ENSMUSG00000035310.9|lin-54 homolog (C. elegans) 	ENSMUST00000046154.5|Lin54|ENSMUSG00000035310.9|lin-54 homolog (C. elegans)
mm10_v2_chr1_+_59482133_59482179	0.171262	ACUGCAU	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chr5_-_92083455_92083557	0.163155	ACUGCAU	ENSMUST00000169094.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2 	ENSMUST00000167918.1|G3bp2|ENSMUSG00000029405.10|GTPase activating protein (SH3 domain) binding protein 2
mm10_v2_chr10_+_102512216_102512292	0.161568	ACUGCAU	ENSMUST00000055355.4|Rassf9|ENSMUSG00000044921.4|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
mm10_v2_chr18_-_43477764_43477836	0.157457	ACUGCAU	ENSMUST00000057110.9|Eif3j2|ENSMUSG00000043424.9|eukaryotic translation initiation factor 3, subunit J2
mm10_v2_chr16_-_32003122_32003287	0.157109	ACUGCAU	ENSMUST00000023457.5|Senp5|ENSMUSG00000022772.5|SUMO/sentrin specific peptidase 5
mm10_v2_chr13_+_3538075_3538150	0.154977	ACUGCAU	ENSMUST00000059515.6|Gdi2|ENSMUSG00000021218.9|guanosine diphosphate (GDP) dissociation inhibitor 2
mm10_v2_chr14_+_34673888_34673930	0.15359	ACUGCAU	ENSMUST00000048263.7|Wapal|ENSMUSG00000041408.10|wings apart-like homolog (Drosophila)
mm10_v2_chr17_-_88065291_88065291	0.153106	ACUGCAU	ENSMUST00000005504.8|Fbxo11|ENSMUSG00000005371.8|F-box protein 11
mm10_v2_chr19_-_30549516_30549665	0.152341	ACUGCAU	ENSMUST00000025803.8|Dkk1|ENSMUSG00000024868.8|dickkopf homolog 1 (Xenopus laevis)
mm10_v2_chr2_+_119675062_119675095	0.151174	ACUGCAU	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr2_-_23572038_23572112	0.149772	ACUGCAU	ENSMUST00000132484.1|Spopl|ENSMUSG00000026771.8|speckle-type POZ protein-like
mm10_v2_chr7_+_120677579_120677630	0.148122	ACUGCAU	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr2_+_12924041_12924113	0.147642	ACUGCAU	ENSMUST00000134794.1|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000028063.4|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000154269.1|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000114796.3|Pter|ENSMUSG00000026730.6|phosphotriesterase related
mm10_v2_chr14_+_67716095_67716151	0.145727	ACUGCAU	ENSMUST00000078053.6|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000145542.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9 	ENSMUST00000125212.1|Kctd9|ENSMUSG00000034327.11|potassium channel tetramerisation domain containing 9
mm10_v2_chr13_-_107890059_107890073	0.134698	ACUGCAU	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr11_-_85235065_85235137	0.13235	ACUGCAU	ENSMUST00000018625.9|Appbp2|ENSMUSG00000018481.9|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm10_v2_chr12_-_91849081_91849157	0.131607	ACUGCAU	ENSMUST00000167466.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000021347.5|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000178462.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans)
mm10_v2_chr9_-_72111827_72111895	0.130498	ACUGCAU	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr1_-_128417352_128417416	0.130039	ACUGCAU	ENSMUST00000027602.8|Dars|ENSMUSG00000026356.9|aspartyl-tRNA synthetase 	ENSMUST00000064309.7|Dars|ENSMUSG00000026356.9|aspartyl-tRNA synthetase
mm10_v2_chrX_+_166238901_166238914	0.12969	ACUGCAU	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr4_+_57845240_57845265	0.129636	ACUGCAU	ENSMUST00000102903.1|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2 	ENSMUST00000107598.3|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2
mm10_v2_chr7_-_89338709_89338795	0.128743	ACUGCAU	ENSMUST00000137723.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000117852.1|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135 	ENSMUST00000041968.3|Tmem135|ENSMUSG00000039428.4|transmembrane protein 135
mm10_v2_chr1_+_37997975_37998010	0.126457	ACUGCAU	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr11_+_80209019_80209057	0.124404	ACUGCAU	ENSMUST00000077451.7|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1 	ENSMUST00000055056.9|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1
mm10_v2_chr14_-_21052420_21052450	0.121405	ACUGCAU	ENSMUST00000154460.1|Ap3m1|ENSMUSG00000021824.6|adaptor-related protein complex 3, mu 1 subunit
mm10_v2_chr9_+_119341487_119341515	0.120864	ACUGCAU	ENSMUST00000175743.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A 	ENSMUST00000176397.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A
mm10_v2_chr11_-_82890541_82890626	0.119081	ACUGCAU	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr9_-_91365756_91365774	0.118346	ACUGCAU	ENSMUST00000034927.6|Zic1|ENSMUSG00000032368.8|zinc finger protein of the cerebellum 1
mm10_v2_chr19_+_3767397_3767523	0.118261	ACUGCAU	ENSMUST00000113974.4|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113972.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113973.1|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113977.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000052699.6|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113968.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm10_v2_chr8_-_81014866_81014942	0.116703	ACUGCAU	ENSMUST00000042724.6|Usp38|ENSMUSG00000038250.8|ubiquitin specific peptidase 38
mm10_v2_chr3_-_139075178_139075253	0.111833	ACUGCAU	ENSMUST00000098574.2|Rap1gds1|ENSMUSG00000028149.6|RAP1, GTP-GDP dissociation stimulator 1 	ENSMUST00000029796.6|Rap1gds1|ENSMUSG00000028149.6|RAP1, GTP-GDP dissociation stimulator 1
mm10_v2_chr11_-_106920681_106920735	0.109556	ACUGCAU	ENSMUST00000103067.3|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr6_+_145211134_145211222	0.108452	ACUGCAU	ENSMUST00000111725.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111726.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000039729.3|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111723.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111724.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111721.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5 	ENSMUST00000111719.1|Lyrm5|ENSMUSG00000040370.7|LYR motif containing 5
mm10_v2_chr15_-_36794498_36794547	0.107846	ACUGCAU	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr3_-_41082992_41083046	0.104407	ACUGCAU	ENSMUST00000058578.7|Pgrmc2|ENSMUSG00000049940.7|progesterone receptor membrane component 2
mm10_v2_chr4_-_3574844_3574853	0.103473	ACUGCAU	ENSMUST00000029891.5|Tmem68|ENSMUSG00000028232.7|transmembrane protein 68
mm10_v2_chr11_+_57801575_57801649	0.10327	ACUGCAU	ENSMUST00000020826.5|Sap30l|ENSMUSG00000020519.5|SAP30-like
mm10_v2_chrX_-_103186618_103186671	0.100449	ACUGCAU	ENSMUST00000121720.1|Nap1l2|ENSMUSG00000082229.1|nucleosome assembly protein 1-like 2
mm10_v2_chr10_-_123196916_123196961	0.0981319	ACUGCAU	ENSMUST00000020334.7|Usp15|ENSMUSG00000020124.9|ubiquitin specific peptidase 15
mm10_v2_chr12_+_49382791_49382883	0.097356	ACUGCAU	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr11_+_52396414_52396449	0.0966485	ACUGCAU	ENSMUST00000109057.1|9530068E07Rik|ENSMUSG00000036275.7|RIKEN cDNA 9530068E07 gene 	ENSMUST00000036952.4|9530068E07Rik|ENSMUSG00000036275.7|RIKEN cDNA 9530068E07 gene
mm10_v2_chr2_-_104494400_104494463	0.0943424	ACUGCAU	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr3_-_108911687_108911746	0.094077	ACUGCAU	ENSMUST00000029480.8|Prpf38b|ENSMUSG00000027881.8|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm10_v2_chr9_-_66795469_66795521	0.0912777	ACUGCAU	ENSMUST00000034934.8|Aph1b|ENSMUSG00000032375.9|anterior pharynx defective 1b homolog (C. elegans)
mm10_v2_chr5_+_86804214_86804276	0.0911821	ACUGCAU	ENSMUST00000119339.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1 	ENSMUST00000120498.1|Ythdc1|ENSMUSG00000035851.8|YTH domain containing 1
mm10_v2_chr18_-_10610124_10610144	0.0905074	ACUGCAU	ENSMUST00000097670.3|Esco1|ENSMUSG00000024293.9|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm10_v2_chr1_+_61638819_61638841	0.0895976	ACUGCAU	ENSMUST00000138768.1|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans) 	ENSMUST00000075374.3|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans)
mm10_v2_chr4_+_55350043_55350078	0.0842185	ACUGCAU	ENSMUST00000030134.8|Rad23b|ENSMUSG00000028426.10|RAD23b homolog (S. cerevisiae)
mm10_v2_chr18_-_34954302_34954359	0.081841	ACUGCAU	ENSMUST00000025217.8|Hspa9|ENSMUSG00000024359.8|heat shock protein 9
mm10_v2_chr15_-_93336800_93336852	0.0812729	ACUGCAU	ENSMUST00000080299.6|Yaf2|ENSMUSG00000022634.9|YY1 associated factor 2
mm10_v2_chr6_+_103510874_103510898	0.0790217	ACUGCAU	ENSMUST00000066905.6|Chl1|ENSMUSG00000030077.9|cell adhesion molecule with homology to L1CAM
mm10_v2_chr5_+_32458974_32459110	0.0789633	ACUGCAU	ENSMUST00000015100.8|Ppp1cb|ENSMUSG00000014956.9|protein phosphatase 1, catalytic subunit, beta isoform
mm10_v2_chrX_+_56609843_56609864	0.0774917	ACUGCAU	ENSMUST00000077741.5|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6 	ENSMUST00000114784.2|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr3_-_26133734_26133734	0.0766472	ACUGCAU	ENSMUST00000108308.3|Nlgn1|ENSMUSG00000063887.7|neuroligin 1 	ENSMUST00000075054.4|Nlgn1|ENSMUSG00000063887.7|neuroligin 1
mm10_v2_chr1_+_172376528_172376599	0.0755556	ACUGCAU	ENSMUST00000052455.2|Pigm|ENSMUSG00000050229.2|phosphatidylinositol glycan anchor biosynthesis, class M
mm10_v2_chr6_-_92214897_92214925	0.0699972	ACUGCAU	ENSMUST00000014694.8|Zfyve20|ENSMUSG00000014550.8|zinc finger, FYVE domain containing 20
mm10_v2_chr19_-_47464406_47464450	0.0689014	ACUGCAU	ENSMUST00000111800.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A 	ENSMUST00000081619.2|Sh3pxd2a|ENSMUSG00000053617.5|SH3 and PX domains 2A
mm10_v2_chr12_+_21111720_21111776	0.0670865	ACUGCAU	ENSMUST00000064595.8|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000101562.4|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000090834.6|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr17_-_10319324_10319380	0.0654707	ACUGCAU	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr4_+_66827545_66827617	0.065393	ACUGCAU	ENSMUST00000048096.5|Tlr4|ENSMUSG00000039005.7|toll-like receptor 4 	ENSMUST00000107365.2|Tlr4|ENSMUSG00000039005.7|toll-like receptor 4
mm10_v2_chr16_-_84735742_84735795	0.0631328	ACUGCAU	ENSMUST00000116584.1|Mrpl39|ENSMUSG00000022889.7|mitochondrial ribosomal protein L39
mm10_v2_chr16_+_37539883_37539918	0.0624139	ACUGCAU	ENSMUST00000023524.6|Rabl3|ENSMUSG00000022827.8|RAB, member of RAS oncogene family-like 3
mm10_v2_chr12_-_78861636_78861641	0.061936	ACUGCAU	ENSMUST00000021536.7|Atp6v1d|ENSMUSG00000021114.8|ATPase, H+ transporting, lysosomal V1 subunit D
mm10_v2_chr6_-_24956106_24956131	0.0605774	ACUGCAU	ENSMUST00000127247.2|Tmem229a|ENSMUSG00000048022.10|transmembrane protein 229A
mm10_v2_chrX_-_136743675_136743692	0.0587443	ACUGCAU	ENSMUST00000166478.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113097.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr3_+_63976106_63976135	0.0567787	ACUGCAU	ENSMUST00000029405.7|Gmps|ENSMUSG00000027823.8|guanine monophosphate synthetase
mm10_v2_chr14_-_46822232_46822266	0.0563693	ACUGCAU	ENSMUST00000111817.1|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta 	ENSMUST00000079314.5|Gmfb|ENSMUSG00000062014.6|glia maturation factor, beta
mm10_v2_chr2_-_120609283_120609317	0.054483	ACUGCAU	ENSMUST00000102496.1|Lrrc57|ENSMUSG00000027286.10|leucine rich repeat containing 57
mm10_v2_chr1_-_160792908_160792969	0.0533735	ACUGCAU	ENSMUST00000028049.7|Rabgap1l|ENSMUSG00000026721.9|RAB GTPase activating protein 1-like
mm10_v2_chr1_-_78197112_78197134	0.0477622	ACUGCAU	ENSMUST00000087086.6|Pax3|ENSMUSG00000004872.9|paired box gene 3
mm10_v2_chr9_-_71592265_71592297	0.0459033	ACUGCAU	ENSMUST00000166843.1|Gcom1|ENSMUSG00000092137.1|GRINL1A complex locus 	ENSMUST00000163998.1|Gcom1|ENSMUSG00000092137.1|GRINL1A complex locus 	ENSMUST00000169573.1|Myzap|ENSMUSG00000041361.7|myocardial zonula adherens protein
mm10_v2_chr11_-_28584260_28584324	0.0431916	ACUGCAU	ENSMUST00000093253.3|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000109502.2|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000042534.8|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A
mm10_v2_chr2_+_121955964_121956001	0.0430414	ACUGCAU	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr17_-_45433682_45433709	0.0423752	ACUGCAU	ENSMUST00000024727.8|Cdc5l|ENSMUSG00000023932.8|cell division cycle 5-like (S. pombe)
mm10_v2_chr3_-_36475688_36475843	0.0413955	ACUGCAU	ENSMUST00000029266.8|Anxa5|ENSMUSG00000027712.8|annexin A5
mm10_v2_chr10_+_110920170_110920188	0.0402501	ACUGCAU	ENSMUST00000020403.5|Csrp2|ENSMUSG00000020186.6|cysteine and glycine-rich protein 2
mm10_v2_chr10_-_64090265_64090297	0.0377442	ACUGCAU	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr19_+_21272276_21272296	0.0329465	ACUGCAU	ENSMUST00000025659.4|Zfand5|ENSMUSG00000024750.4|zinc finger, AN1-type domain 5
mm10_v2_chr11_-_86357570_86357614	0.0283025	ACUGCAU	ENSMUST00000043624.8|Med13|ENSMUSG00000034297.8|mediator complex subunit 13
mm10_v2_chr13_+_55593135_55593177	0.0239093	ACUGCAU	ENSMUST00000109905.3|Tmed9|ENSMUSG00000058569.7|transmembrane emp24 protein transport domain containing 9
mm10_v2_chr7_+_90130227_90130279	0.0163547	ACUGCAU	ENSMUST00000049537.7|Picalm|ENSMUSG00000039361.9|phosphatidylinositol binding clathrin assembly protein
mm10_v2_chr15_+_96287518_96287604	0.00900731	ACUGCAU	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr8_+_54954728_54954820	0.00352765	ACUGCAU	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr15_+_11000716_11000736	0.00274672	ACUGCAU	ENSMUST00000117100.1|Slc45a2|ENSMUSG00000022243.8|solute carrier family 45, member 2 	ENSMUST00000022851.7|Slc45a2|ENSMUSG00000022243.8|solute carrier family 45, member 2
mm10_v2_chr9_-_71485893_71485975	0.00085171	ACUGCAU	ENSMUST00000034720.5|Polr2m|ENSMUSG00000032199.6|polymerase (RNA) II (DNA directed) polypeptide M
mm10_v2_chr8_-_57962564_57962564	8.12759e-05	ACUGCAU	ENSMUST00000098757.3|Galntl6|ENSMUSG00000096914.1|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
