mm10_v2_chr5_-_122049822_122049882	0.134684	AAUCUCU	ENSMUST00000111752.3|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr12_-_118301429_118301458	0.0738053	AAUCUCU	ENSMUST00000026367.9|Sp4|ENSMUSG00000025323.9|trans-acting transcription factor 4
mm10_v2_chr9_+_25252439_25252516	0.0551542	AAUCUCU	ENSMUST00000115272.2|Sept7|ENSMUSG00000001833.10|septin 7 	ENSMUST00000165594.2|Sept7|ENSMUSG00000001833.10|septin 7
mm10_v2_chr19_-_7105729_7105729	0.0353079	AAUCUCU	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr19_-_60226666_60226706	0.0320784	AAUCUCU	ENSMUST00000065286.1|D19Ertd737e|ENSMUSG00000057858.7|DNA segment, Chr 19, ERATO Doi 737, expressed
mm10_v2_chr10_-_102490418_102490440	0.0275092	AAUCUCU	ENSMUST00000020040.3|Nts|ENSMUSG00000019890.3|neurotensin
mm10_v2_chr10_-_9675163_9675243	0.0272646	AAUCUCU	ENSMUST00000100070.2|Samd5|ENSMUSG00000060487.5|sterile alpha motif domain containing 5
mm10_v2_chr9_-_85327110_85327128	0.0268691	AAUCUCU	ENSMUST00000034802.8|Fam46a|ENSMUSG00000032265.8|family with sequence similarity 46, member A
mm10_v2_chr14_-_50897456_50897507	0.0252733	AAUCUCU	ENSMUST00000170855.1|A930018M24Rik|ENSMUSG00000091089.1|RIKEN cDNA A930018M24 gene
mm10_v2_chr6_-_92943485_92943507	0.0225891	AAUCUCU	ENSMUST00000113438.1|Adamts9|ENSMUSG00000030022.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
mm10_v2_chr4_-_88033328_88033373	0.0220724	AAUCUCU	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr3_-_144570136_144570227	0.0208213	AAUCUCU	ENSMUST00000043325.7|Hs2st1|ENSMUSG00000040151.8|heparan sulfate 2-O-sulfotransferase 1
mm10_v2_chr10_+_4611971_4612021	0.0173879	AAUCUCU	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr14_+_29018205_29018226	0.0166223	AAUCUCU	ENSMUST00000055662.2|Lrtm1|ENSMUSG00000045776.2|leucine-rich repeats and transmembrane domains 1
mm10_v2_chr10_+_111972664_111972805	0.0163623	AAUCUCU	ENSMUST00000163048.1|Krr1|ENSMUSG00000063334.10|KRR1, small subunit (SSU) processome component, homolog (yeast) 	ENSMUST00000174653.1|Krr1|ENSMUSG00000063334.10|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm10_v2_chr9_-_95511897_95511996	0.0153594	AAUCUCU	ENSMUST00000079659.5|U2surp|ENSMUSG00000032407.7|U2 snRNP-associated SURP domain containing 	ENSMUST00000078374.6|U2surp|ENSMUSG00000032407.7|U2 snRNP-associated SURP domain containing
mm10_v2_chr9_+_45042425_45042551	0.0153247	AAUCUCU	ENSMUST00000034600.4|Mpzl2|ENSMUSG00000032092.4|myelin protein zero-like 2
mm10_v2_chr8_-_54529951_54530007	0.0149833	AAUCUCU	ENSMUST00000067476.8|Spcs3|ENSMUSG00000054408.9|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm10_v2_chr19_-_24861828_24861855	0.0134577	AAUCUCU	ENSMUST00000047666.4|Pgm5|ENSMUSG00000041731.7|phosphoglucomutase 5
mm10_v2_chrX_-_104413825_104413856	0.0133886	AAUCUCU	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr7_-_131410495_131410521	0.0125642	AAUCUCU	ENSMUST00000121033.1|Ikzf5|ENSMUSG00000040167.9|IKAROS family zinc finger 5 	ENSMUST00000046306.8|Ikzf5|ENSMUSG00000040167.9|IKAROS family zinc finger 5
mm10_v2_chr1_-_173367638_173367695	0.0123637	AAUCUCU	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr8_-_87804411_87804463	0.0120794	AAUCUCU	ENSMUST00000165770.2|Zfp423|ENSMUSG00000045333.9|zinc finger protein 423
mm10_v2_chr14_+_49066495_49066587	0.0120475	AAUCUCU	ENSMUST00000037473.4|Ap5m1|ENSMUSG00000036291.5|adaptor-related protein complex 5, mu 1 subunit
mm10_v2_chr9_+_3532295_3532354	0.010955	AAUCUCU	ENSMUST00000115733.1|Gucy1a2|ENSMUSG00000041624.9|guanylate cyclase 1, soluble, alpha 2
mm10_v2_chr13_+_77708683_77708740	0.0107826	AAUCUCU	ENSMUST00000163257.1|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A 	ENSMUST00000091459.4|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A 	ENSMUST00000099358.3|Fam172a|ENSMUSG00000064138.7|family with sequence similarity 172, member A
mm10_v2_chr17_-_46831413_46831413	0.0107098	AAUCUCU	ENSMUST00000040624.5|Gltscr1l|ENSMUSG00000036568.6|GLTSCR1-like
mm10_v2_chr9_-_104262900_104262949	0.0105014	AAUCUCU	ENSMUST00000035170.6|Dnajc13|ENSMUSG00000032560.7|DnaJ (Hsp40) homolog, subfamily C, member 13
mm10_v2_chr19_-_40402267_40402267	0.0101885	AAUCUCU	ENSMUST00000099467.3|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000099466.3|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000165212.1|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1 	ENSMUST00000165469.1|Sorbs1|ENSMUSG00000025006.9|sorbin and SH3 domain containing 1
mm10_v2_chr5_+_92137896_92137939	0.00988108	AAUCUCU	ENSMUST00000031355.6|Uso1|ENSMUSG00000029407.7|USO1 vesicle docking factor
mm10_v2_chr8_-_85299483_85299535	0.00885125	AAUCUCU	ENSMUST00000034131.8|Vps35|ENSMUSG00000031696.8|vacuolar protein sorting 35
mm10_v2_chr9_-_65021645_65021717	0.00838584	AAUCUCU	ENSMUST00000036615.5|Ptplad1|ENSMUSG00000033629.5|protein tyrosine phosphatase-like A domain containing 1
mm10_v2_chr16_+_33380765_33380787	0.0080961	AAUCUCU	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr6_-_137649211_137649294	0.00787959	AAUCUCU	ENSMUST00000134630.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000058210.6|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000111878.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr10_+_99107036_99107132	0.00786624	AAUCUCU	ENSMUST00000020113.8|Poc1b|ENSMUSG00000019952.8|POC1 centriolar protein homolog B (Chlamydomonas) 	ENSMUST00000159228.1|Poc1b|ENSMUSG00000019952.8|POC1 centriolar protein homolog B (Chlamydomonas) 	ENSMUST00000159990.1|Poc1b|ENSMUSG00000019952.8|POC1 centriolar protein homolog B (Chlamydomonas)
mm10_v2_chr9_-_66919646_66919710	0.0074257	AAUCUCU	ENSMUST00000041139.7|Rab8b|ENSMUSG00000036943.8|RAB8B, member RAS oncogene family
mm10_v2_chr11_-_90390895_90390926	0.00739077	AAUCUCU	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chrX_-_51681703_51681703	0.00724317	AAUCUCU	ENSMUST00000088172.5|Hs6st2|ENSMUSG00000062184.5|heparan sulfate 6-O-sulfotransferase 2
mm10_v2_chr18_+_53472981_53472981	0.00693569	AAUCUCU	ENSMUST00000115399.1|Prdm6|ENSMUSG00000069378.7|PR domain containing 6
mm10_v2_chr14_+_17660956_17660963	0.00692286	AAUCUCU	ENSMUST00000022303.7|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta 	ENSMUST00000091471.4|Thrb|ENSMUSG00000021779.10|thyroid hormone receptor beta
mm10_v2_chr10_-_39895821_39895821	0.00610451	AAUCUCU	ENSMUST00000178045.1|AA474331|ENSMUSG00000096687.1|expressed sequence AA474331
mm10_v2_chr3_+_134236483_134236500	0.00596971	AAUCUCU	ENSMUST00000181904.1|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4 	ENSMUST00000053048.9|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4
mm10_v2_chr14_-_49783327_49783394	0.00595421	AAUCUCU	ENSMUST00000118129.1|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene 	ENSMUST00000036972.6|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene
mm10_v2_chr7_+_19212521_19212546	0.00552882	AAUCUCU	ENSMUST00000060225.4|Gpr4|ENSMUSG00000044317.6|G protein-coupled receptor 4
mm10_v2_chr11_-_49712674_49712726	0.00529404	AAUCUCU	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr1_+_105780693_105780762	0.00520543	AAUCUCU	ENSMUST00000027559.6|Tnfrsf11a|ENSMUSG00000026321.6|tumor necrosis factor receptor superfamily, member 11a
mm10_v2_chr8_-_45382198_45382291	0.00468756	AAUCUCU	ENSMUST00000093526.6|Fam149a|ENSMUSG00000070044.9|family with sequence similarity 149, member A
mm10_v2_chr9_-_35116804_35116891	0.00467982	AAUCUCU	ENSMUST00000034537.6|St3gal4|ENSMUSG00000032038.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 4
mm10_v2_chr11_-_30954080_30954152	0.00457869	AAUCUCU	ENSMUST00000073192.7|Erlec1|ENSMUSG00000020311.11|endoplasmic reticulum lectin 1
mm10_v2_chr10_+_102512216_102512292	0.00407457	AAUCUCU	ENSMUST00000055355.4|Rassf9|ENSMUSG00000044921.4|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
mm10_v2_chrX_+_159255782_159255899	0.00383071	AAUCUCU	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr1_-_64737735_64737756	0.00371213	AAUCUCU	ENSMUST00000063982.5|Fzd5|ENSMUSG00000045005.8|frizzled homolog 5 (Drosophila) 	ENSMUST00000116133.2|Fzd5|ENSMUSG00000045005.8|frizzled homolog 5 (Drosophila)
mm10_v2_chr15_+_12205009_12205040	0.00334671	AAUCUCU	ENSMUST00000038172.8|Mtmr12|ENSMUSG00000039458.8|myotubularin related protein 12
mm10_v2_chr7_+_105404568_105404568	0.0033369	AAUCUCU	ENSMUST00000033187.4|Cnga4|ENSMUSG00000030897.4|cyclic nucleotide gated channel alpha 4
mm10_v2_chr6_-_97205549_97205642	0.00315339	AAUCUCU	ENSMUST00000164744.1|Uba3|ENSMUSG00000030061.10|ubiquitin-like modifier activating enzyme 3 	ENSMUST00000089287.5|Uba3|ENSMUSG00000030061.10|ubiquitin-like modifier activating enzyme 3
mm10_v2_chr6_-_89362581_89362637	0.00314133	AAUCUCU	ENSMUST00000163139.1|Plxna1|ENSMUSG00000030084.5|plexin A1
mm10_v2_chr6_-_42597372_42597384	0.00278458	AAUCUCU	ENSMUST00000069023.3|Fam115e|ENSMUSG00000018656.5|family with sequence similarity 115, member E
mm10_v2_chr1_+_140246216_140246226	0.00264591	AAUCUCU	ENSMUST00000119786.1|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2 	ENSMUST00000120796.1|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2 	ENSMUST00000060201.8|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2 	ENSMUST00000120709.1|Kcnt2|ENSMUSG00000052726.9|potassium channel, subfamily T, member 2
mm10_v2_chr6_-_31563978_31563989	0.00251291	AAUCUCU	ENSMUST00000026698.7|Podxl|ENSMUSG00000025608.9|podocalyxin-like
mm10_v2_chr1_+_95313607_95313677	0.00250493	AAUCUCU	ENSMUST00000059975.6|Fam174a|ENSMUSG00000051185.8|family with sequence similarity 174, member A
mm10_v2_chr15_-_89841860_89841923	0.00241664	AAUCUCU	ENSMUST00000029441.3|Syt10|ENSMUSG00000063260.2|synaptotagmin X
mm10_v2_chr10_-_14705459_14705560	0.00219163	AAUCUCU	ENSMUST00000149485.1|Vta1|ENSMUSG00000019868.10|Vps20-associated 1 homolog (S. cerevisiae) 	ENSMUST00000154132.1|Vta1|ENSMUSG00000019868.10|Vps20-associated 1 homolog (S. cerevisiae)
mm10_v2_chr8_-_84800024_84800283	0.00164536	AAUCUCU	ENSMUST00000126806.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X 	ENSMUST00000076715.6|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr9_-_59036387_59036460	0.00146909	AAUCUCU	ENSMUST00000068664.5|Neo1|ENSMUSG00000032340.7|neogenin
mm10_v2_chr18_-_62179948_62179986	0.00137925	AAUCUCU	ENSMUST00000053640.3|Adrb2|ENSMUSG00000045730.3|adrenergic receptor, beta 2
mm10_v2_chr9_-_37669170_37669226	0.00135089	AAUCUCU	ENSMUST00000011262.2|Panx3|ENSMUSG00000011118.3|pannexin 3
mm10_v2_chr11_+_120232921_120232952	0.00113157	AAUCUCU	ENSMUST00000122148.1|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1 	ENSMUST00000044985.7|Bahcc1|ENSMUSG00000039741.9|BAH domain and coiled-coil containing 1
mm10_v2_chr15_-_48791933_48792063	0.000872863	AAUCUCU	ENSMUST00000160658.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000100670.3|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000162830.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3
mm10_v2_chr4_+_59805829_59805914	0.00035287	AAUCUCU	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr19_+_40831248_40831292	0.000197979	AAUCUCU	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
