mm10_v2_chr2_+_102658640_102658669	2.98888	AAUACUG	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr3_-_75956888_75956959	2.28115	AAUACUG	ENSMUST00000038563.7|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000167078.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000117242.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4
mm10_v2_chr10_-_109010955_109010983	2.15362	AAUACUG	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr15_-_54278420_54278484	1.85437	AAUACUG	ENSMUST00000079772.3|Tnfrsf11b|ENSMUSG00000063727.3|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm10_v2_chr11_+_94211431_94211454	1.80294	AAUACUG	ENSMUST00000041589.5|Tob1|ENSMUSG00000037573.5|transducer of ErbB-2.1
mm10_v2_chr9_-_96752822_96752869	1.67676	AAUACUG	ENSMUST00000152594.1|Zbtb38|ENSMUSG00000040433.10|zinc finger and BTB domain containing 38
mm10_v2_chr1_-_136960427_136960494	1.64219	AAUACUG	ENSMUST00000027649.7|Nr5a2|ENSMUSG00000026398.8|nuclear receptor subfamily 5, group A, member 2
mm10_v2_chr19_+_31868754_31868787	1.57621	AAUACUG	ENSMUST00000075838.5|A1cf|ENSMUSG00000052595.6|APOBEC1 complementation factor
mm10_v2_chr11_+_93996082_93996103	1.49316	AAUACUG	ENSMUST00000041956.7|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr12_+_64965742_64965775	1.47681	AAUACUG	ENSMUST00000066296.7|Fam179b|ENSMUSG00000035614.10|family with sequence similarity 179, member B
mm10_v2_chr2_-_122702615_122702717	1.47006	AAUACUG	ENSMUST00000005952.4|Slc30a4|ENSMUSG00000005802.6|solute carrier family 30 (zinc transporter), member 4 	ENSMUST00000099457.3|Slc30a4|ENSMUSG00000005802.6|solute carrier family 30 (zinc transporter), member 4
mm10_v2_chrX_-_51018011_51018032	1.46754	AAUACUG	ENSMUST00000053593.7|Rap2c|ENSMUSG00000050029.7|RAP2C, member of RAS oncogene family
mm10_v2_chr16_-_76373827_76373852	1.41687	AAUACUG	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr14_-_31830402_31830440	1.41232	AAUACUG	ENSMUST00000014640.7|Ankrd28|ENSMUSG00000014496.7|ankyrin repeat domain 28
mm10_v2_chr1_+_7088917_7088993	1.39615	AAUACUG	ENSMUST00000061280.10|Pcmtd1|ENSMUSG00000051285.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 	ENSMUST00000182114.1|Pcmtd1|ENSMUSG00000051285.11|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm10_v2_chr3_+_103279293_103279293	1.3858	AAUACUG	ENSMUST00000029444.6|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33 	ENSMUST00000106860.1|Trim33|ENSMUSG00000033014.6|tripartite motif-containing 33
mm10_v2_chr4_-_46991842_46991916	1.36244	AAUACUG	ENSMUST00000107749.2|Gabbr2|ENSMUSG00000039809.9|gamma-aminobutyric acid (GABA) B receptor, 2
mm10_v2_chr11_-_106216318_106216363	1.35969	AAUACUG	ENSMUST00000002043.3|Ccdc47|ENSMUSG00000078622.2|coiled-coil domain containing 47
mm10_v2_chr5_-_123749371_123749391	1.35138	AAUACUG	ENSMUST00000182955.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000182489.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000050827.7|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2
mm10_v2_chr19_+_38836561_38836612	1.34858	AAUACUG	ENSMUST00000037302.5|Tbc1d12|ENSMUSG00000048720.7|TBC1D12: TBC1 domain family, member 12
mm10_v2_chr16_+_84835070_84835124	1.33309	AAUACUG	ENSMUST00000009120.7|Gabpa|ENSMUSG00000008976.10|GA repeat binding protein, alpha
mm10_v2_chr12_-_59011996_59012034	1.31751	AAUACUG	ENSMUST00000021375.5|Sec23a|ENSMUSG00000020986.7|SEC23A (S. cerevisiae)
mm10_v2_chr14_+_101729907_101729958	1.30143	AAUACUG	ENSMUST00000100337.3|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr3_+_7366598_7366641	1.2622	AAUACUG	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chrX_-_75875101_75875182	1.25007	AAUACUG	ENSMUST00000114059.3|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr5_+_88886809_88886825	1.24488	AAUACUG	ENSMUST00000148750.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr5_-_86172747_86172803	1.22884	AAUACUG	ENSMUST00000039373.7|Uba6|ENSMUSG00000035898.7|ubiquitin-like modifier activating enzyme 6
mm10_v2_chr13_+_81657732_81657846	1.17598	AAUACUG	ENSMUST00000049055.6|Lysmd3|ENSMUSG00000035840.6|LysM, putative peptidoglycan-binding, domain containing 3
mm10_v2_chr5_-_107875035_107875107	1.17525	AAUACUG	ENSMUST00000138111.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5 	ENSMUST00000112642.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5
mm10_v2_chr5_-_151190154_151190269	1.17006	AAUACUG	ENSMUST00000062015.8|Stard13|ENSMUSG00000016128.8|StAR-related lipid transfer (START) domain containing 13 	ENSMUST00000110483.2|Stard13|ENSMUSG00000016128.8|StAR-related lipid transfer (START) domain containing 13
mm10_v2_chr13_+_96542727_96542775	1.1636	AAUACUG	ENSMUST00000077672.4|Col4a3bp|ENSMUSG00000021669.8|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 	ENSMUST00000109444.2|Col4a3bp|ENSMUSG00000021669.8|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm10_v2_chr1_+_16105774_16105870	1.16292	AAUACUG	ENSMUST00000027053.7|Rdh10|ENSMUSG00000025921.7|retinol dehydrogenase 10 (all-trans)
mm10_v2_chr11_-_61855026_61855073	1.15007	AAUACUG	ENSMUST00000004920.3|Ulk2|ENSMUSG00000004798.8|unc-51 like kinase 2
mm10_v2_chr18_+_35562158_35562174	1.14659	AAUACUG	ENSMUST00000166793.1|Matr3|ENSMUSG00000037236.8|matrin 3
mm10_v2_chr1_-_9748376_9748451	1.12429	AAUACUG	ENSMUST00000057438.6|Vcpip1|ENSMUSG00000045210.8|valosin containing protein (p97)/p47 complex interacting protein 1
mm10_v2_chr16_+_77014069_77014069	1.11582	AAUACUG	ENSMUST00000023580.6|Usp25|ENSMUSG00000022867.9|ubiquitin specific peptidase 25
mm10_v2_chr2_+_6322621_6322667	1.10589	AAUACUG	ENSMUST00000114937.1|Usp6nl|ENSMUSG00000039046.9|USP6 N-terminal like
mm10_v2_chr2_+_15055274_15055379	1.10583	AAUACUG	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr11_-_119547744_119547759	1.10244	AAUACUG	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr1_+_187997821_187997834	1.09841	AAUACUG	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr15_-_96699698_96699717	1.09689	AAUACUG	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr10_-_57532489_57532530	1.08398	AAUACUG	ENSMUST00000020027.4|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr13_-_100552442_100552498	1.07515	AAUACUG	ENSMUST00000159515.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000160859.1|Ocln|ENSMUSG00000021638.6|occludin 	ENSMUST00000069756.4|Ocln|ENSMUSG00000021638.6|occludin
mm10_v2_chrX_-_56598069_56598107	1.07354	AAUACUG	ENSMUST00000059899.2|Mmgt1|ENSMUSG00000061273.3|membrane magnesium transporter 1
mm10_v2_chr11_-_106612928_106612973	1.05579	AAUACUG	ENSMUST00000042780.7|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr5_+_65763518_65763541	1.0432	AAUACUG	ENSMUST00000113738.1|N4bp2|ENSMUSG00000037795.8|NEDD4 binding protein 2
mm10_v2_chr1_+_136624901_136624949	1.02447	AAUACUG	ENSMUST00000047734.8|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281 	ENSMUST00000112046.1|Zfp281|ENSMUSG00000041483.8|zinc finger protein 281
mm10_v2_chr9_+_59750876_59750918	1.01613	AAUACUG	ENSMUST00000136740.1|Myo9a|ENSMUSG00000039585.9|myosin IXa 	ENSMUST00000135298.1|Myo9a|ENSMUSG00000039585.9|myosin IXa 	ENSMUST00000128341.1|Myo9a|ENSMUSG00000039585.9|myosin IXa
mm10_v2_chr13_-_119790805_119790805	1.00539	AAUACUG	ENSMUST00000178271.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131 	ENSMUST00000177916.1|Zfp131|ENSMUSG00000094870.1|zinc finger protein 131
mm10_v2_chr7_+_82867327_82867357	1.0027	AAUACUG	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chrX_+_42067836_42067872	1.00183	AAUACUG	ENSMUST00000115094.1|Xiap|ENSMUSG00000025860.8|X-linked inhibitor of apoptosis
mm10_v2_chrX_-_164980310_164980375	0.995304	AAUACUG	ENSMUST00000004715.1|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2 	ENSMUST00000112248.2|Mospd2|ENSMUSG00000061778.4|motile sperm domain containing 2
mm10_v2_chr3_-_108146080_108146150	0.995288	AAUACUG	ENSMUST00000000001.4|Gnai3|ENSMUSG00000000001.4|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm10_v2_chr6_-_149101674_149101686	0.991751	AAUACUG	ENSMUST00000111557.1|Dennd5b|ENSMUSG00000030313.9|DENN/MADD domain containing 5B
mm10_v2_chr12_+_8674129_8674150	0.973381	AAUACUG	ENSMUST00000111123.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000178015.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000020915.3|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr9_-_101251810_101251839	0.962708	AAUACUG	ENSMUST00000075941.5|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr2_-_148732457_148732467	0.954412	AAUACUG	ENSMUST00000028926.6|Napb|ENSMUSG00000027438.8|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm10_v2_chr4_+_57637816_57637846	0.947856	AAUACUG	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr5_-_123684289_123684379	0.933698	AAUACUG	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr3_-_146812951_146812983	0.927274	AAUACUG	ENSMUST00000102515.3|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr4_-_126968124_126968154	0.919603	AAUACUG	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr8_+_88118747_88118777	0.916608	AAUACUG	ENSMUST00000095214.3|Cnep1r1|ENSMUSG00000036810.10|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm10_v2_chr6_+_114282635_114282817	0.914219	AAUACUG	ENSMUST00000032454.5|Slc6a1|ENSMUSG00000030310.8|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm10_v2_chr4_+_12089373_12089441	0.909736	AAUACUG	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr12_-_30911593_30911615	0.905146	AAUACUG	ENSMUST00000062740.7|Acp1|ENSMUSG00000044573.8|acid phosphatase 1, soluble 	ENSMUST00000074038.5|Acp1|ENSMUSG00000044573.8|acid phosphatase 1, soluble
mm10_v2_chr6_+_100833606_100833663	0.902272	AAUACUG	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr19_+_23141183_23141263	0.893951	AAUACUG	ENSMUST00000036884.1|Klf9|ENSMUSG00000033863.1|Kruppel-like factor 9
mm10_v2_chr5_+_73491026_73491110	0.883825	AAUACUG	ENSMUST00000063882.5|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 	ENSMUST00000113558.1|Dcun1d4|ENSMUSG00000051674.8|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm10_v2_chr17_-_80728026_80728093	0.881776	AAUACUG	ENSMUST00000112389.2|Map4k3|ENSMUSG00000024242.8|mitogen-activated protein kinase kinase kinase kinase 3 	ENSMUST00000025089.7|Map4k3|ENSMUSG00000024242.8|mitogen-activated protein kinase kinase kinase kinase 3
mm10_v2_chr2_+_68861433_68861510	0.881683	AAUACUG	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr1_+_66175286_66175348	0.880551	AAUACUG	ENSMUST00000114017.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114015.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr10_-_92722356_92722420	0.874278	AAUACUG	ENSMUST00000020163.6|Nedd1|ENSMUSG00000019988.6|neural precursor cell expressed, developmentally down-regulated gene 1
mm10_v2_chr18_-_39490649_39490717	0.860054	AAUACUG	ENSMUST00000115567.1|Nr3c1|ENSMUSG00000024431.8|nuclear receptor subfamily 3, group C, member 1
mm10_v2_chr14_-_25769033_25769083	0.854939	AAUACUG	ENSMUST00000069180.7|Zcchc24|ENSMUSG00000055538.7|zinc finger, CCHC domain containing 24
mm10_v2_chrX_+_163908982_163909017	0.853744	AAUACUG	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr6_+_114131229_114131246	0.833832	AAUACUG	ENSMUST00000032451.7|Slc6a11|ENSMUSG00000030307.7|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm10_v2_chr11_+_79993062_79993122	0.827609	AAUACUG	ENSMUST00000017692.8|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila) 	ENSMUST00000163272.1|Suz12|ENSMUSG00000017548.9|suppressor of zeste 12 homolog (Drosophila)
mm10_v2_chr2_+_18677002_18677053	0.807073	AAUACUG	ENSMUST00000028071.6|Bmi1|ENSMUSG00000026739.7|Bmi1 polycomb ring finger oncogene
mm10_v2_chr2_+_31572701_31572725	0.801806	AAUACUG	ENSMUST00000055244.6|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr16_+_21891969_21891969	0.800383	AAUACUG	ENSMUST00000042065.6|Map3k13|ENSMUSG00000033618.6|mitogen-activated protein kinase kinase kinase 13
mm10_v2_chr9_-_70657121_70657188	0.785465	AAUACUG	ENSMUST00000049031.5|Fam63b|ENSMUSG00000042444.9|family with sequence similarity 63, member B
mm10_v2_chrX_-_103821940_103821992	0.78358	AAUACUG	ENSMUST00000042664.5|Slc16a2|ENSMUSG00000033965.6|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm10_v2_chr2_-_39065438_39065503	0.777364	AAUACUG	ENSMUST00000112850.2|Golga1|ENSMUSG00000026754.10|golgi autoantigen, golgin subfamily a, 1
mm10_v2_chr18_+_53862087_53862143	0.772335	AAUACUG	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr10_-_115315546_115315615	0.771799	AAUACUG	ENSMUST00000020343.7|Rab21|ENSMUSG00000020132.9|RAB21, member RAS oncogene family
mm10_v2_chr2_-_125859139_125859221	0.770813	AAUACUG	ENSMUST00000110463.1|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) 	ENSMUST00000028635.5|Cops2|ENSMUSG00000027206.7|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm10_v2_chr13_+_110395041_110395057	0.768823	AAUACUG	ENSMUST00000022212.7|Plk2|ENSMUSG00000021701.7|polo-like kinase 2
mm10_v2_chr8_-_41133697_41133755	0.76528	AAUACUG	ENSMUST00000155055.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000059115.6|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1 	ENSMUST00000145860.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr6_-_143947092_143947111	0.761968	AAUACUG	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr3_+_32436151_32436151	0.756945	AAUACUG	ENSMUST00000029201.7|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr2_+_119675062_119675095	0.753969	AAUACUG	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr12_-_98737405_98737515	0.753219	AAUACUG	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr16_+_14705832_14705858	0.751102	AAUACUG	ENSMUST00000023356.6|Snai2|ENSMUSG00000022676.6|snail homolog 2 (Drosophila)
mm10_v2_chrX_-_133688978_133689005	0.748927	AAUACUG	ENSMUST00000149154.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19 	ENSMUST00000167944.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19
mm10_v2_chr12_+_40446050_40446099	0.744619	AAUACUG	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr4_-_34882919_34882964	0.743808	AAUACUG	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr7_+_102702331_102702331	0.725947	AAUACUG	ENSMUST00000094124.3|Olfr558|ENSMUSG00000070423.3|olfactory receptor 558
mm10_v2_chr2_-_52424826_52424916	0.7257	AAUACUG	ENSMUST00000036541.7|Arl5a|ENSMUSG00000036093.7|ADP-ribosylation factor-like 5A
mm10_v2_chrX_-_104413825_104413856	0.721041	AAUACUG	ENSMUST00000033695.5|Abcb7|ENSMUSG00000031333.7|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm10_v2_chr2_+_121955964_121956001	0.709154	AAUACUG	ENSMUST00000036647.6|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr8_-_36613937_36613948	0.705417	AAUACUG	ENSMUST00000033923.7|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr3_+_107101551_107101567	0.697489	AAUACUG	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr1_+_85793411_85793541	0.691347	AAUACUG	ENSMUST00000113360.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39 	ENSMUST00000126962.1|Cab39|ENSMUSG00000036707.10|calcium binding protein 39
mm10_v2_chr19_+_44931119_44931172	0.687689	AAUACUG	ENSMUST00000096053.3|Fam178a|ENSMUSG00000036097.7|family with sequence similarity 178, member A
mm10_v2_chr6_+_4903298_4903346	0.683733	AAUACUG	ENSMUST00000035813.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr19_-_59943647_59943678	0.682143	AAUACUG	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr14_+_34673888_34673930	0.681483	AAUACUG	ENSMUST00000048263.7|Wapal|ENSMUSG00000041408.10|wings apart-like homolog (Drosophila)
mm10_v2_chr2_+_83644435_83644490	0.680812	AAUACUG	ENSMUST00000081591.6|Zc3h15|ENSMUSG00000027091.8|zinc finger CCCH-type containing 15
mm10_v2_chr5_-_20882072_20882124	0.679513	AAUACUG	ENSMUST00000118174.1|Phtf2|ENSMUSG00000039987.9|putative homeodomain transcription factor 2
mm10_v2_chr1_-_13372434_13372457	0.670229	AAUACUG	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr9_+_80066895_80066936	0.66431	AAUACUG	ENSMUST00000037484.8|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6 	ENSMUST00000176640.1|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr1_+_82586942_82586988	0.660415	AAUACUG	ENSMUST00000113457.2|Col4a3|ENSMUSG00000079465.2|collagen, type IV, alpha 3
mm10_v2_chr2_-_18392736_18392838	0.64445	AAUACUG	ENSMUST00000091418.5|Dnajc1|ENSMUSG00000026740.6|DnaJ (Hsp40) homolog, subfamily C, member 1 	ENSMUST00000166495.1|Dnajc1|ENSMUSG00000026740.6|DnaJ (Hsp40) homolog, subfamily C, member 1
mm10_v2_chr2_-_125782834_125782870	0.643866	AAUACUG	ENSMUST00000053699.6|Secisbp2l|ENSMUSG00000035093.10|SECIS binding protein 2-like
mm10_v2_chr4_+_57845240_57845265	0.641912	AAUACUG	ENSMUST00000102903.1|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2 	ENSMUST00000107598.3|Akap2|ENSMUSG00000038729.14|A kinase (PRKA) anchor protein 2
mm10_v2_chr9_-_31211805_31211824	0.638726	AAUACUG	ENSMUST00000072634.7|Aplp2|ENSMUSG00000031996.10|amyloid beta (A4) precursor-like protein 2 	ENSMUST00000079758.7|Aplp2|ENSMUSG00000031996.10|amyloid beta (A4) precursor-like protein 2
mm10_v2_chr9_-_107710475_107710475	0.638283	AAUACUG	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr2_-_51149100_51149115	0.635736	AAUACUG	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr6_+_56714891_56714951	0.633907	AAUACUG	ENSMUST00000031805.8|Avl9|ENSMUSG00000029787.8|AVL9 homolog (S. cerevisiase)
mm10_v2_chr13_-_58113592_58113620	0.623194	AAUACUG	ENSMUST00000160860.1|Klhl3|ENSMUSG00000014164.8|kelch-like 3
mm10_v2_chr4_-_81442756_81442836	0.617567	AAUACUG	ENSMUST00000107262.1|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein 	ENSMUST00000102830.3|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein
mm10_v2_chrX_+_13280970_13281031	0.617028	AAUACUG	ENSMUST00000000804.6|Ddx3x|ENSMUSG00000000787.6|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm10_v2_chr6_-_148831448_148831494	0.616964	AAUACUG	ENSMUST00000048418.7|Ipo8|ENSMUSG00000040029.8|importin 8
mm10_v2_chr1_+_65186727_65186750	0.616752	AAUACUG	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr6_+_65042575_65042667	0.609298	AAUACUG	ENSMUST00000031984.6|Smarcad1|ENSMUSG00000029920.7|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm10_v2_chr2_-_132145057_132145118	0.600292	AAUACUG	ENSMUST00000028815.8|Slc23a2|ENSMUSG00000027340.9|solute carrier family 23 (nucleobase transporters), member 2
mm10_v2_chr15_+_40655020_40655054	0.597866	AAUACUG	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr2_+_119897212_119897305	0.595805	AAUACUG	ENSMUST00000046717.6|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110774.1|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000110773.2|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000079934.5|Mga|ENSMUSG00000033943.9|MAX gene associated 	ENSMUST00000156510.1|Mga|ENSMUSG00000033943.9|MAX gene associated
mm10_v2_chr16_-_75766758_75766821	0.595414	AAUACUG	ENSMUST00000114244.1|Hspa13|ENSMUSG00000032932.8|heat shock protein 70 family, member 13 	ENSMUST00000046283.8|Hspa13|ENSMUSG00000032932.8|heat shock protein 70 family, member 13
mm10_v2_chr4_+_150853919_150854050	0.592443	AAUACUG	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr15_+_32920723_32920826	0.591934	AAUACUG	ENSMUST00000022871.5|Sdc2|ENSMUSG00000022261.5|syndecan 2
mm10_v2_chr5_-_75978447_75978463	0.588062	AAUACUG	ENSMUST00000113516.1|Kdr|ENSMUSG00000062960.7|kinase insert domain protein receptor
mm10_v2_chr5_+_150673739_150673827	0.586195	AAUACUG	ENSMUST00000016569.4|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) 	ENSMUST00000038900.8|Pds5b|ENSMUSG00000034021.9|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm10_v2_chr13_+_75707484_75707510	0.57192	AAUACUG	ENSMUST00000001583.6|Ell2|ENSMUSG00000001542.6|elongation factor RNA polymerase II 2
mm10_v2_chr3_-_84304762_84304809	0.567112	AAUACUG	ENSMUST00000107692.1|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr11_-_86993682_86993707	0.565066	AAUACUG	ENSMUST00000018571.4|Ypel2|ENSMUSG00000018427.7|yippee-like 2 (Drosophila)
mm10_v2_chr1_+_61638819_61638841	0.563445	AAUACUG	ENSMUST00000138768.1|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans) 	ENSMUST00000075374.3|Pard3b|ENSMUSG00000052062.8|par-3 partitioning defective 3 homolog B (C. elegans)
mm10_v2_chr6_-_59426279_59426345	0.56309	AAUACUG	ENSMUST00000051065.4|Gprin3|ENSMUSG00000045441.4|GPRIN family member 3
mm10_v2_chr13_+_104178797_104178872	0.56218	AAUACUG	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr5_-_142608785_142608808	0.557968	AAUACUG	ENSMUST00000037048.7|Mmd2|ENSMUSG00000039533.7|monocyte to macrophage differentiation-associated 2
mm10_v2_chr10_-_127621107_127621166	0.551682	AAUACUG	ENSMUST00000049149.8|Lrp1|ENSMUSG00000040249.9|low density lipoprotein receptor-related protein 1
mm10_v2_chr17_-_79896028_79896123	0.550414	AAUACUG	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr11_+_80209019_80209057	0.55019	AAUACUG	ENSMUST00000077451.7|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1 	ENSMUST00000055056.9|Rhot1|ENSMUSG00000017686.10|ras homolog gene family, member T1
mm10_v2_chr18_+_5591860_5591902	0.546703	AAUACUG	ENSMUST00000025081.5|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1 	ENSMUST00000159390.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr19_-_34747289_34747313	0.542167	AAUACUG	ENSMUST00000009522.3|Slc16a12|ENSMUSG00000009378.3|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm10_v2_chr9_+_14276301_14276347	0.541728	AAUACUG	ENSMUST00000034507.7|Sesn3|ENSMUSG00000032009.7|sestrin 3
mm10_v2_chr11_-_86357570_86357614	0.541307	AAUACUG	ENSMUST00000043624.8|Med13|ENSMUSG00000034297.8|mediator complex subunit 13
mm10_v2_chr11_+_88047693_88047727	0.535716	AAUACUG	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr16_+_8513429_8513497	0.527801	AAUACUG	ENSMUST00000065987.7|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase 	ENSMUST00000115838.1|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase 	ENSMUST00000115839.2|Abat|ENSMUSG00000057880.6|4-aminobutyrate aminotransferase
mm10_v2_chr9_-_52168111_52168111	0.525383	AAUACUG	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr4_+_102760294_102760525	0.522032	AAUACUG	ENSMUST00000072481.5|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000156596.1|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000080728.6|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENSMUST00000106882.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chrX_-_169320273_169320383	0.520653	AAUACUG	ENSMUST00000033717.2|Hccs|ENSMUSG00000031352.4|holocytochrome c synthetase 	ENSMUST00000112115.1|Hccs|ENSMUSG00000031352.4|holocytochrome c synthetase
mm10_v2_chr10_-_40883073_40883143	0.513579	AAUACUG	ENSMUST00000044166.7|Cdc40|ENSMUSG00000038446.7|cell division cycle 40
mm10_v2_chr14_+_45351473_45351473	0.512601	AAUACUG	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr2_-_134644125_134644145	0.5123	AAUACUG	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr8_+_88199194_88199224	0.51135	AAUACUG	ENSMUST00000119033.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000066748.3|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5 	ENSMUST00000118952.1|Papd5|ENSMUSG00000036779.6|PAP associated domain containing 5
mm10_v2_chr6_-_92214897_92214925	0.505832	AAUACUG	ENSMUST00000014694.8|Zfyve20|ENSMUSG00000014550.8|zinc finger, FYVE domain containing 20
mm10_v2_chr19_+_3767397_3767523	0.504678	AAUACUG	ENSMUST00000113974.4|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113972.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113973.1|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113977.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000052699.6|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENSMUST00000113968.2|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm10_v2_chr10_-_121586730_121586803	0.502475	AAUACUG	ENSMUST00000020316.2|Tbk1|ENSMUSG00000020115.2|TANK-binding kinase 1
mm10_v2_chr17_+_88440711_88440741	0.502367	AAUACUG	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr18_+_73573044_73573044	0.500233	AAUACUG	ENSMUST00000091852.4|Mex3c|ENSMUSG00000037253.8|mex3 homolog C (C. elegans)
mm10_v2_chr13_+_81711407_81711457	0.496458	AAUACUG	ENSMUST00000057598.5|Mblac2|ENSMUSG00000051098.5|metallo-beta-lactamase domain containing 2
mm10_v2_chr4_-_129189512_129189594	0.496309	AAUACUG	ENSMUST00000117965.1|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000106061.2|S100pbp|ENSMUSG00000040928.9|S100P binding protein 	ENSMUST00000072431.6|S100pbp|ENSMUSG00000040928.9|S100P binding protein
mm10_v2_chr1_+_37997975_37998010	0.494117	AAUACUG	ENSMUST00000027252.7|Eif5b|ENSMUSG00000026083.7|eukaryotic translation initiation factor 5B
mm10_v2_chr19_+_27217357_27217424	0.494088	AAUACUG	ENSMUST00000047645.6|Vldlr|ENSMUSG00000024924.8|very low density lipoprotein receptor 	ENSMUST00000167487.1|Vldlr|ENSMUSG00000024924.8|very low density lipoprotein receptor
mm10_v2_chr13_-_96542479_96542523	0.492227	AAUACUG	ENSMUST00000022172.4|Polk|ENSMUSG00000021668.8|polymerase (DNA directed), kappa
mm10_v2_chr18_+_69925466_69925537	0.490067	AAUACUG	ENSMUST00000043929.4|Ccdc68|ENSMUSG00000038903.7|coiled-coil domain containing 68
mm10_v2_chr10_+_69533761_69533776	0.489757	AAUACUG	ENSMUST00000182884.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr9_+_32696005_32696121	0.489676	AAUACUG	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr12_-_54656496_54656572	0.485599	AAUACUG	ENSMUST00000056228.6|Sptssa|ENSMUSG00000044408.6|serine palmitoyltransferase, small subunit A
mm10_v2_chr15_+_81586206_81586250	0.483167	AAUACUG	ENSMUST00000068387.4|Ep300|ENSMUSG00000055024.6|E1A binding protein p300
mm10_v2_chr5_+_108065742_108065767	0.477514	AAUACUG	ENSMUST00000081567.4|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000170319.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2 	ENSMUST00000112626.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr13_+_46669517_46669545	0.473297	AAUACUG	ENSMUST00000099547.3|C78339|ENSMUSG00000069237.8|expressed sequence C78339
mm10_v2_chr17_-_79715034_79715047	0.471476	AAUACUG	ENSMUST00000024894.1|Cyp1b1|ENSMUSG00000024087.3|cytochrome P450, family 1, subfamily b, polypeptide 1
mm10_v2_chr10_-_95564167_95564181	0.470826	AAUACUG	ENSMUST00000020217.5|Nudt4|ENSMUSG00000020029.5|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm10_v2_chr15_-_81400043_81400093	0.469711	AAUACUG	ENSMUST00000172107.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000169204.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13 	ENSMUST00000163382.1|St13|ENSMUSG00000022403.8|suppression of tumorigenicity 13
mm10_v2_chr9_+_101074727_101074727	0.469061	AAUACUG	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chrX_+_94367147_94367183	0.468032	AAUACUG	ENSMUST00000113897.2|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113896.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O 	ENSMUST00000113895.1|Apoo|ENSMUSG00000079508.2|apolipoprotein O
mm10_v2_chr9_+_108692116_108692193	0.466222	AAUACUG	ENSMUST00000035220.6|Prkar2a|ENSMUSG00000032601.8|protein kinase, cAMP dependent regulatory, type II alpha
mm10_v2_chr7_-_34313531_34313568	0.465602	AAUACUG	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr12_+_78748947_78748971	0.462001	AAUACUG	ENSMUST00000082024.5|Mpp5|ENSMUSG00000021112.8|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm10_v2_chr17_-_10319324_10319380	0.460994	AAUACUG	ENSMUST00000097414.3|Qk|ENSMUSG00000062078.8|quaking 	ENSMUST00000042296.7|Qk|ENSMUSG00000062078.8|quaking
mm10_v2_chr8_-_35495487_35495545	0.457956	AAUACUG	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr18_-_34954302_34954359	0.45648	AAUACUG	ENSMUST00000025217.8|Hspa9|ENSMUSG00000024359.8|heat shock protein 9
mm10_v2_chr1_-_174921813_174921827	0.455516	AAUACUG	ENSMUST00000055294.3|Grem2|ENSMUSG00000050069.3|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm10_v2_chr5_-_25498702_25498745	0.449687	AAUACUG	ENSMUST00000173073.1|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C 	ENSMUST00000045291.7|Kmt2c|ENSMUSG00000038056.9|lysine (K)-specific methyltransferase 2C
mm10_v2_chr19_+_25236959_25236982	0.445799	AAUACUG	ENSMUST00000049400.8|Kank1|ENSMUSG00000032702.10|KN motif and ankyrin repeat domains 1
mm10_v2_chr8_+_12395287_12395295	0.443548	AAUACUG	ENSMUST00000180353.1|Sox1|ENSMUSG00000096014.1|SRY-box containing gene 1
mm10_v2_chr8_+_79639618_79639730	0.44305	AAUACUG	ENSMUST00000173078.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4 	ENSMUST00000173286.1|Otud4|ENSMUSG00000036990.7|OTU domain containing 4
mm10_v2_chr8_+_68880491_68880564	0.441706	AAUACUG	ENSMUST00000015712.8|Lpl|ENSMUSG00000015568.9|lipoprotein lipase
mm10_v2_chr12_+_55089202_55089202	0.440602	AAUACUG	ENSMUST00000021407.10|Srp54a|ENSMUSG00000073079.5|signal recognition particle 54A
mm10_v2_chr9_-_59486610_59486621	0.439313	AAUACUG	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr2_-_102400863_102400970	0.437797	AAUACUG	ENSMUST00000102573.1|Trim44|ENSMUSG00000027189.10|tripartite motif-containing 44
mm10_v2_chr11_+_77216180_77216287	0.435874	AAUACUG	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr18_+_34777008_34777075	0.434102	AAUACUG	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr8_+_36457548_36457574	0.432211	AAUACUG	ENSMUST00000135373.1|6430573F11Rik|ENSMUSG00000039620.10|RIKEN cDNA 6430573F11 gene 	ENSMUST00000147525.1|6430573F11Rik|ENSMUSG00000039620.10|RIKEN cDNA 6430573F11 gene
mm10_v2_chr4_+_57434247_57434368	0.430049	AAUACUG	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr13_-_24831409_24831518	0.429181	AAUACUG	ENSMUST00000006900.6|Acot13|ENSMUSG00000006717.6|acyl-CoA thioesterase 13
mm10_v2_chr8_-_23257009_23257031	0.424827	AAUACUG	ENSMUST00000121783.1|Golga7|ENSMUSG00000015341.10|golgi autoantigen, golgin subfamily a, 7
mm10_v2_chr6_-_137649211_137649294	0.420747	AAUACUG	ENSMUST00000134630.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000058210.6|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000111878.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr12_+_69184158_69184170	0.420517	AAUACUG	ENSMUST00000060579.8|Mgat2|ENSMUSG00000043998.9|mannoside acetylglucosaminyltransferase 2
mm10_v2_chr2_-_64097994_64098023	0.417856	AAUACUG	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr10_-_20725023_20725078	0.417794	AAUACUG	ENSMUST00000020165.7|Pde7b|ENSMUSG00000019990.8|phosphodiesterase 7B
mm10_v2_chr7_-_73541738_73541758	0.416807	AAUACUG	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr14_-_26971232_26971232	0.416611	AAUACUG	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr2_+_163994960_163994960	0.41143	AAUACUG	ENSMUST00000018470.3|Ywhab|ENSMUSG00000018326.3|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm10_v2_chr6_+_108213086_108213123	0.40919	AAUACUG	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr16_-_32003122_32003287	0.40796	AAUACUG	ENSMUST00000023457.5|Senp5|ENSMUSG00000022772.5|SUMO/sentrin specific peptidase 5
mm10_v2_chr14_-_100149764_100149764	0.406885	AAUACUG	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chrX_+_151344171_151344197	0.406187	AAUACUG	ENSMUST00000073364.5|Fam120c|ENSMUSG00000025262.8|family with sequence similarity 120, member C
mm10_v2_chr18_-_84951477_84951536	0.405768	AAUACUG	ENSMUST00000025547.2|Timm21|ENSMUSG00000024645.4|tranlocase of inner mitochondrial membrane 21
mm10_v2_chr12_-_44210061_44210077	0.404923	AAUACUG	ENSMUST00000015049.3|Dnajb9|ENSMUSG00000014905.3|DnaJ (Hsp40) homolog, subfamily B, member 9
mm10_v2_chrX_+_38189780_38189826	0.404919	AAUACUG	ENSMUST00000049740.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33 	ENSMUST00000115142.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr9_-_83441065_83441127	0.404657	AAUACUG	ENSMUST00000034791.8|Lca5|ENSMUSG00000032258.9|Leber congenital amaurosis 5 (human) 	ENSMUST00000034793.8|Lca5|ENSMUSG00000032258.9|Leber congenital amaurosis 5 (human)
mm10_v2_chr9_-_75559604_75559665	0.401627	AAUACUG	ENSMUST00000072232.7|Tmod3|ENSMUSG00000058587.7|tropomodulin 3
mm10_v2_chr11_+_73267388_73267539	0.399728	AAUACUG	ENSMUST00000049676.2|Trpv3|ENSMUSG00000043029.2|transient receptor potential cation channel, subfamily V, member 3
mm10_v2_chr12_-_59219725_59219776	0.39633	AAUACUG	ENSMUST00000043204.7|Fbxo33|ENSMUSG00000035329.7|F-box protein 33
mm10_v2_chr19_+_29522263_29522341	0.396306	AAUACUG	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chrX_+_52912232_52912361	0.394188	AAUACUG	ENSMUST00000078944.6|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000101587.3|Phf6|ENSMUSG00000025626.10|PHD finger protein 6 	ENSMUST00000154864.2|Phf6|ENSMUSG00000025626.10|PHD finger protein 6
mm10_v2_chr7_+_59228743_59228769	0.393564	AAUACUG	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr17_-_46031813_46031863	0.391327	AAUACUG	ENSMUST00000024747.7|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A
mm10_v2_chr1_-_155417283_155417323	0.389962	AAUACUG	ENSMUST00000027741.5|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr2_+_117121374_117121374	0.389169	AAUACUG	ENSMUST00000028829.6|Spred1|ENSMUSG00000027351.8|sprouty protein with EVH-1 domain 1, related sequence
mm10_v2_chr8_-_86745950_86746054	0.388306	AAUACUG	ENSMUST00000045296.4|Siah1a|ENSMUSG00000036840.4|seven in absentia 1A
mm10_v2_chr18_+_36281069_36281151	0.387379	AAUACUG	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr10_+_40883819_40883862	0.386683	AAUACUG	ENSMUST00000105509.1|Wasf1|ENSMUSG00000019831.8|WAS protein family, member 1
mm10_v2_chr16_+_64851991_64851996	0.385869	AAUACUG	ENSMUST00000067744.7|Cggbp1|ENSMUSG00000054604.7|CGG triplet repeat binding protein 1
mm10_v2_chr11_-_86544754_86544805	0.379949	AAUACUG	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr6_-_145250177_145250259	0.379675	AAUACUG	ENSMUST00000111710.1|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 	ENSMUST00000155145.1|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 	ENSMUST00000032399.5|Kras|ENSMUSG00000030265.8|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm10_v2_chr3_+_137867675_137867797	0.374543	AAUACUG	ENSMUST00000090178.5|Dnajb14|ENSMUSG00000074212.3|DnaJ (Hsp40) homolog, subfamily B, member 14
mm10_v2_chr14_-_45530118_45530182	0.374457	AAUACUG	ENSMUST00000045905.6|Fermt2|ENSMUSG00000037712.9|fermitin family homolog 2 (Drosophila)
mm10_v2_chr16_+_33380765_33380787	0.374336	AAUACUG	ENSMUST00000165418.1|Zfp148|ENSMUSG00000022811.10|zinc finger protein 148
mm10_v2_chr3_+_54693088_54693105	0.372572	AAUACUG	ENSMUST00000170552.1|Supt20|ENSMUSG00000027751.9|suppressor of Ty 20
mm10_v2_chr11_+_75679259_75679327	0.372215	AAUACUG	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr2_+_122028544_122028563	0.371929	AAUACUG	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr3_+_53041517_53041583	0.370322	AAUACUG	ENSMUST00000059562.7|Lhfp|ENSMUSG00000048332.7|lipoma HMGIC fusion partner 	ENSMUST00000147139.1|Lhfp|ENSMUSG00000048332.7|lipoma HMGIC fusion partner
mm10_v2_chr4_-_94603239_94603253	0.367251	AAUACUG	ENSMUST00000107107.2|Plaa|ENSMUSG00000028577.7|phospholipase A2, activating protein
mm10_v2_chr16_+_44139821_44139900	0.366099	AAUACUG	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr13_+_41249841_41249863	0.364824	AAUACUG	ENSMUST00000165561.2|Smim13|ENSMUSG00000091264.2|small integral membrane protein 13
mm10_v2_chr1_-_106714217_106714330	0.364066	AAUACUG	ENSMUST00000112751.1|Bcl2|ENSMUSG00000057329.6|B cell leukemia/lymphoma 2
mm10_v2_chr1_+_55406163_55406388	0.358956	AAUACUG	ENSMUST00000042986.8|Plcl1|ENSMUSG00000038349.9|phospholipase C-like 1
mm10_v2_chr9_+_70542872_70542920	0.35884	AAUACUG	ENSMUST00000049263.7|Sltm|ENSMUSG00000032212.9|SAFB-like, transcription modulator
mm10_v2_chr3_-_30969399_30969425	0.356811	AAUACUG	ENSMUST00000177992.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000129817.2|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000168645.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000108255.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000064718.5|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000099163.3|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila)
mm10_v2_chr1_+_55131231_55131249	0.356723	AAUACUG	ENSMUST00000162364.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein 	ENSMUST00000159311.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr8_+_90828820_90828842	0.353696	AAUACUG	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr15_-_100584075_100584075	0.351131	AAUACUG	ENSMUST00000184908.1|POU6F1|ENSMUSG00000098598.1|POU domain, class 6, transcription factor 1 (Pou6f1), mRNA
mm10_v2_chr4_-_83486453_83486478	0.349467	AAUACUG	ENSMUST00000107214.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000107215.2|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1 	ENSMUST00000030207.8|Psip1|ENSMUSG00000028484.10|PC4 and SFRS1 interacting protein 1
mm10_v2_chr2_+_91457501_91457549	0.348008	AAUACUG	ENSMUST00000028689.3|Lrp4|ENSMUSG00000027253.9|low density lipoprotein receptor-related protein 4
mm10_v2_chr1_+_194619815_194619833	0.347824	AAUACUG	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chrX_+_159532674_159532748	0.344845	AAUACUG	ENSMUST00000057180.6|A830080D01Rik|ENSMUSG00000044150.6|RIKEN cDNA A830080D01 gene
mm10_v2_chr12_+_35047180_35047230	0.344181	AAUACUG	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr11_-_76846968_76847045	0.334454	AAUACUG	ENSMUST00000021201.5|Cpd|ENSMUSG00000020841.5|carboxypeptidase D
mm10_v2_chr2_+_178118975_178119158	0.33338	AAUACUG	ENSMUST00000108917.1|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr4_+_11156411_11156453	0.327181	AAUACUG	ENSMUST00000029865.3|Trp53inp1|ENSMUSG00000028211.5|transformation related protein 53 inducible nuclear protein 1
mm10_v2_chr5_-_22344690_22344710	0.326436	AAUACUG	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chr18_-_60713389_60713389	0.32043	AAUACUG	ENSMUST00000169273.1|Ndst1|ENSMUSG00000054008.8|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm10_v2_chr18_-_34931993_34932007	0.320315	AAUACUG	ENSMUST00000025218.7|Etf1|ENSMUSG00000024360.7|eukaryotic translation termination factor 1
mm10_v2_chr13_+_14063776_14063822	0.319405	AAUACUG	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr4_-_135272798_135272819	0.317156	AAUACUG	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr7_+_120677579_120677630	0.316402	AAUACUG	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr7_-_65371210_65371287	0.315628	AAUACUG	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr16_+_57121705_57121761	0.315294	AAUACUG	ENSMUST00000166897.1|Tomm70a|ENSMUSG00000022752.8|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm10_v2_chr12_+_78861693_78861819	0.313992	AAUACUG	ENSMUST00000071230.7|Eif2s1|ENSMUSG00000021116.9|eukaryotic translation initiation factor 2, subunit 1 alpha
mm10_v2_chr5_-_21055880_21055961	0.312958	AAUACUG	ENSMUST00000030556.7|Ptpn12|ENSMUSG00000028771.7|protein tyrosine phosphatase, non-receptor type 12
mm10_v2_chr15_+_12117813_12117846	0.312717	AAUACUG	ENSMUST00000122941.1|Zfr|ENSMUSG00000022201.9|zinc finger RNA binding protein
mm10_v2_chr13_-_93499803_93499825	0.311579	AAUACUG	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chr2_-_60125651_60125775	0.31052	AAUACUG	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr1_-_46854046_46854079	0.304273	AAUACUG	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr17_+_74338943_74338987	0.302948	AAUACUG	ENSMUST00000024869.6|Spast|ENSMUSG00000024068.6|spastin
mm10_v2_chr3_-_144570136_144570227	0.302139	AAUACUG	ENSMUST00000043325.7|Hs2st1|ENSMUSG00000040151.8|heparan sulfate 2-O-sulfotransferase 1
mm10_v2_chr3_-_152982240_152982251	0.299987	AAUACUG	ENSMUST00000044278.5|St6galnac5|ENSMUSG00000039037.5|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
mm10_v2_chr10_-_44004846_44004846	0.298169	AAUACUG	ENSMUST00000020017.8|Aim1|ENSMUSG00000019866.9|absent in melanoma 1
mm10_v2_chrX_+_159255782_159255899	0.295825	AAUACUG	ENSMUST00000126686.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3 	ENSMUST00000033671.6|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr2_+_3713449_3713474	0.293759	AAUACUG	ENSMUST00000027965.4|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr12_+_49382791_49382883	0.291932	AAUACUG	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr4_-_134287215_134287258	0.284655	AAUACUG	ENSMUST00000145006.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105877.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000127857.1|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like 	ENSMUST00000105876.2|Pdik1l|ENSMUSG00000050890.9|PDLIM1 interacting kinase 1 like
mm10_v2_chr12_+_71309876_71309984	0.2839	AAUACUG	ENSMUST00000061273.5|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus) 	ENSMUST00000150639.1|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm10_v2_chr10_-_94944578_94944578	0.282602	AAUACUG	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr1_-_162740350_162740533	0.274722	AAUACUG	ENSMUST00000182331.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000183011.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182593.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C 	ENSMUST00000182149.1|Prrc2c|ENSMUSG00000040225.9|proline-rich coiled-coil 2C
mm10_v2_chr2_+_30237680_30237747	0.271492	AAUACUG	ENSMUST00000113654.1|Lrrc8a|ENSMUSG00000007476.12|leucine rich repeat containing 8A 	ENSMUST00000095078.2|Lrrc8a|ENSMUSG00000007476.12|leucine rich repeat containing 8A
mm10_v2_chr6_+_22288221_22288288	0.270212	AAUACUG	ENSMUST00000128245.1|Wnt16|ENSMUSG00000029671.9|wingless-related MMTV integration site 16 	ENSMUST00000031681.3|Wnt16|ENSMUSG00000029671.9|wingless-related MMTV integration site 16 	ENSMUST00000148639.1|Wnt16|ENSMUSG00000029671.9|wingless-related MMTV integration site 16
mm10_v2_chr13_+_54071815_54071859	0.269438	AAUACUG	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chrX_+_82948861_82948915	0.26889	AAUACUG	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr11_-_49712674_49712726	0.26701	AAUACUG	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr5_+_36868467_36868560	0.266453	AAUACUG	ENSMUST00000031003.7|Ppp2r2c|ENSMUSG00000029120.7|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm10_v2_chr1_+_158362261_158362304	0.265813	AAUACUG	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr11_+_101552849_101552901	0.264405	AAUACUG	ENSMUST00000107213.1|Nbr1|ENSMUSG00000017119.13|neighbor of Brca1 gene 1 	ENSMUST00000107208.1|Nbr1|ENSMUSG00000017119.13|neighbor of Brca1 gene 1 	ENSMUST00000107212.1|Nbr1|ENSMUSG00000017119.13|neighbor of Brca1 gene 1 	ENSMUST00000127421.1|Nbr1|ENSMUSG00000017119.13|neighbor of Brca1 gene 1
mm10_v2_chr9_+_113812547_113812621	0.264218	AAUACUG	ENSMUST00000166734.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000111838.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000163895.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2
mm10_v2_chr2_+_136713444_136713492	0.261906	AAUACUG	ENSMUST00000028727.4|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25 	ENSMUST00000110098.3|Snap25|ENSMUSG00000027273.7|synaptosomal-associated protein 25
mm10_v2_chrX_+_20425688_20425762	0.258571	AAUACUG	ENSMUST00000115384.2|Phf16|ENSMUSG00000037315.8|PHD finger protein 16
mm10_v2_chrX_+_96096034_96096056	0.25811	AAUACUG	ENSMUST00000117399.1|Msn|ENSMUSG00000031207.10|moesin
mm10_v2_chr4_-_56947411_56947447	0.257487	AAUACUG	ENSMUST00000107609.3|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245 	ENSMUST00000068792.6|Tmem245|ENSMUSG00000055296.8|transmembrane protein 245
mm10_v2_chr13_+_41606216_41606216	0.256531	AAUACUG	ENSMUST00000129449.1|Tmem170b|ENSMUSG00000087370.2|transmembrane protein 170B
mm10_v2_chr12_+_33429605_33429649	0.253344	AAUACUG	ENSMUST00000020877.7|Twistnb|ENSMUSG00000020561.7|TWIST neighbor
mm10_v2_chr6_+_91684061_91684132	0.251707	AAUACUG	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr18_+_10325148_10325222	0.251004	AAUACUG	ENSMUST00000048977.8|Greb1l|ENSMUSG00000042942.9|growth regulation by estrogen in breast cancer-like
mm10_v2_chr15_-_28025834_28025879	0.249791	AAUACUG	ENSMUST00000090247.5|Trio|ENSMUSG00000022263.9|triple functional domain (PTPRF interacting)
mm10_v2_chr16_-_4213404_4213404	0.248537	AAUACUG	ENSMUST00000023165.6|Crebbp|ENSMUSG00000022521.8|CREB binding protein
mm10_v2_chr8_+_26158186_26158252	0.248162	AAUACUG	ENSMUST00000036807.5|Thap1|ENSMUSG00000037214.5|THAP domain containing, apoptosis associated protein 1 	ENSMUST00000130231.1|Thap1|ENSMUSG00000037214.5|THAP domain containing, apoptosis associated protein 1
mm10_v2_chr4_-_16163611_16163647	0.245971	AAUACUG	ENSMUST00000037035.5|Ripk2|ENSMUSG00000041135.9|receptor (TNFRSF)-interacting serine-threonine kinase 2
mm10_v2_chr5_+_43868802_43868866	0.245503	AAUACUG	ENSMUST00000030964.4|Cd38|ENSMUSG00000029084.4|CD38 antigen
mm10_v2_chr10_-_111010001_111010066	0.244508	AAUACUG	ENSMUST00000099285.3|Zdhhc17|ENSMUSG00000035798.7|zinc finger, DHHC domain containing 17 	ENSMUST00000041723.7|Zdhhc17|ENSMUSG00000035798.7|zinc finger, DHHC domain containing 17
mm10_v2_chr9_+_13827708_13827781	0.243496	AAUACUG	ENSMUST00000059579.5|Fam76b|ENSMUSG00000037808.6|family with sequence similarity 76, member B
mm10_v2_chr16_+_33185045_33185153	0.242992	AAUACUG	ENSMUST00000039733.8|Osbpl11|ENSMUSG00000022807.8|oxysterol binding protein-like 11
mm10_v2_chr4_-_58553311_58553357	0.242743	AAUACUG	ENSMUST00000107571.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000055018.4|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr4_+_120854786_120854843	0.240606	AAUACUG	ENSMUST00000071093.2|Rims3|ENSMUSG00000032890.11|regulating synaptic membrane exocytosis 3
mm10_v2_chr1_-_82291370_82291416	0.239104	AAUACUG	ENSMUST00000069799.2|Irs1|ENSMUSG00000055980.2|insulin receptor substrate 1
mm10_v2_chr1_-_143702832_143702893	0.236522	AAUACUG	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chr15_-_8444449_8444506	0.234684	AAUACUG	ENSMUST00000052965.6|Nipbl|ENSMUSG00000022141.6|Nipped-B homolog (Drosophila)
mm10_v2_chr6_-_88045190_88045270	0.234478	AAUACUG	ENSMUST00000113596.1|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family 	ENSMUST00000113600.3|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family
mm10_v2_chr13_-_47106176_47106206	0.233554	AAUACUG	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr15_-_97055942_97055964	0.232731	AAUACUG	ENSMUST00000023101.3|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr16_-_31201150_31201243	0.229942	AAUACUG	ENSMUST00000058033.7|Acap2|ENSMUSG00000049076.9|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm10_v2_chr3_+_16183177_16183206	0.22897	AAUACUG	ENSMUST00000108345.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3 	ENSMUST00000108346.2|Ythdf3|ENSMUSG00000047213.8|YTH domain family 3
mm10_v2_chr12_-_13249198_13249224	0.228031	AAUACUG	ENSMUST00000071103.8|Ddx1|ENSMUSG00000037149.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
mm10_v2_chr11_-_90390895_90390926	0.227779	AAUACUG	ENSMUST00000004051.7|Hlf|ENSMUSG00000003949.10|hepatic leukemia factor
mm10_v2_chr5_-_122354161_122354237	0.227058	AAUACUG	ENSMUST00000117263.1|Rad9b|ENSMUSG00000038569.7|RAD9 homolog B 	ENSMUST00000049009.6|Rad9b|ENSMUSG00000038569.7|RAD9 homolog B
mm10_v2_chr8_+_94601928_94602003	0.225504	AAUACUG	ENSMUST00000060389.8|Rspry1|ENSMUSG00000050079.9|ring finger and SPRY domain containing 1 	ENSMUST00000121101.1|Rspry1|ENSMUSG00000050079.9|ring finger and SPRY domain containing 1
mm10_v2_chr11_-_51756378_51756618	0.224776	AAUACUG	ENSMUST00000109092.1|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000064297.4|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000109097.2|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae)
mm10_v2_chr18_+_76944384_76944444	0.224119	AAUACUG	ENSMUST00000156454.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000150990.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000026485.7|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2 	ENSMUST00000148955.1|Hdhd2|ENSMUSG00000025421.8|haloacid dehalogenase-like hydrolase domain containing 2
mm10_v2_chr16_-_59555752_59555752	0.222261	AAUACUG	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr7_-_70360593_70360746	0.221945	AAUACUG	ENSMUST00000032768.7|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
mm10_v2_chr14_-_61556881_61556890	0.220387	AAUACUG	ENSMUST00000022497.8|Spryd7|ENSMUSG00000021930.8|SPRY domain containing 7
mm10_v2_chr1_+_138963709_138963808	0.220184	AAUACUG	ENSMUST00000168527.1|Dennd1b|ENSMUSG00000056268.9|DENN/MADD domain containing 1B
mm10_v2_chr9_-_99140065_99140087	0.216971	AAUACUG	ENSMUST00000035037.7|Pik3cb|ENSMUSG00000032462.8|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm10_v2_chr1_-_54557595_54557698	0.21542	AAUACUG	ENSMUST00000097739.3|Pgap1|ENSMUSG00000073678.3|post-GPI attachment to proteins 1
mm10_v2_chr14_+_70077375_70077445	0.213806	AAUACUG	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr10_-_120979327_120979373	0.21159	AAUACUG	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr14_-_67008834_67008877	0.208956	AAUACUG	ENSMUST00000111115.1|Bnip3l|ENSMUSG00000022051.9|BCL2/adenovirus E1B interacting protein 3-like 	ENSMUST00000022634.8|Bnip3l|ENSMUSG00000022051.9|BCL2/adenovirus E1B interacting protein 3-like
mm10_v2_chr2_+_48814109_48814173	0.208652	AAUACUG	ENSMUST00000063886.3|Acvr2a|ENSMUSG00000052155.5|activin receptor IIA
mm10_v2_chrX_+_68678541_68678554	0.207471	AAUACUG	ENSMUST00000088546.5|Fmr1|ENSMUSG00000000838.11|fragile X mental retardation syndrome 1
mm10_v2_chr18_+_31759817_31759851	0.204471	AAUACUG	ENSMUST00000115808.2|Ammecr1l|ENSMUSG00000041915.8|AMME chromosomal region gene 1-like
mm10_v2_chr4_-_55532453_55532485	0.204406	AAUACUG	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr15_-_77307043_77307058	0.204364	AAUACUG	ENSMUST00000048145.5|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2 	ENSMUST00000171751.1|Rbfox2|ENSMUSG00000033565.10|RNA binding protein, fox-1 homolog (C. elegans) 2
mm10_v2_chr8_+_54954728_54954820	0.20386	AAUACUG	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr10_+_93160824_93160894	0.202121	AAUACUG	ENSMUST00000069965.7|Cdk17|ENSMUSG00000020015.9|cyclin-dependent kinase 17
mm10_v2_chr10_-_44458715_44458751	0.200319	AAUACUG	ENSMUST00000039174.4|Prdm1|ENSMUSG00000038151.6|PR domain containing 1, with ZNF domain
mm10_v2_chr1_-_155972887_155972890	0.199672	AAUACUG	ENSMUST00000138762.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350 	ENSMUST00000124495.1|Cep350|ENSMUSG00000033671.11|centrosomal protein 350
mm10_v2_chr9_+_40269430_40269441	0.199172	AAUACUG	ENSMUST00000171835.2|Scn3b|ENSMUSG00000049281.9|sodium channel, voltage-gated, type III, beta
mm10_v2_chrX_-_105929397_105929408	0.199079	AAUACUG	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr1_+_64690443_64690467	0.198172	AAUACUG	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr12_-_80436571_80436603	0.196338	AAUACUG	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr1_+_62703285_62703317	0.195595	AAUACUG	ENSMUST00000102822.2|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000075144.5|Nrp2|ENSMUSG00000025969.9|neuropilin 2
mm10_v2_chr2_-_73892530_73892555	0.195255	AAUACUG	ENSMUST00000136958.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112010.2|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000128531.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2 	ENSMUST00000112017.1|Atf2|ENSMUSG00000027104.12|activating transcription factor 2
mm10_v2_chr3_-_37312418_37312465	0.195201	AAUACUG	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chrX_-_111463043_111463081	0.193723	AAUACUG	ENSMUST00000065976.5|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6
mm10_v2_chr4_+_105157339_105157354	0.192296	AAUACUG	ENSMUST00000064139.7|Ppap2b|ENSMUSG00000028517.8|phosphatidic acid phosphatase type 2B
mm10_v2_chr1_+_43098710_43098760	0.1913	AAUACUG	ENSMUST00000010434.7|AI597479|ENSMUSG00000010290.7|expressed sequence AI597479
mm10_v2_chr12_-_75596195_75596261	0.187021	AAUACUG	ENSMUST00000021447.7|Ppp2r5e|ENSMUSG00000021051.9|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm10_v2_chr11_+_53350783_53350833	0.184822	AAUACUG	ENSMUST00000060945.5|Aff4|ENSMUSG00000049470.7|AF4/FMR2 family, member 4
mm10_v2_chr1_-_16619437_16619489	0.182933	AAUACUG	ENSMUST00000117146.1|Ube2w|ENSMUSG00000025939.11|ubiquitin-conjugating enzyme E2W (putative)
mm10_v2_chr9_+_72532214_72532271	0.181879	AAUACUG	ENSMUST00000163401.2|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7 	ENSMUST00000093820.3|Rfx7|ENSMUSG00000037674.9|regulatory factor X, 7
mm10_v2_chr14_-_105176860_105176918	0.181085	AAUACUG	ENSMUST00000163545.1|Rbm26|ENSMUSG00000022119.9|RNA binding motif protein 26
mm10_v2_chr11_+_77686155_77686179	0.180662	AAUACUG	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr18_-_24530203_24530245	0.18001	AAUACUG	ENSMUST00000046206.3|Rprd1a|ENSMUSG00000040446.3|regulation of nuclear pre-mRNA domain containing 1A
mm10_v2_chr7_-_99980431_99980477	0.177917	AAUACUG	ENSMUST00000080817.4|Rnf169|ENSMUSG00000058761.4|ring finger protein 169
mm10_v2_chr17_-_34603675_34603702	0.176397	AAUACUG	ENSMUST00000015622.7|Rnf5|ENSMUSG00000015478.7|ring finger protein 5
mm10_v2_chr19_-_3575708_3575756	0.173661	AAUACUG	ENSMUST00000113997.2|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000025846.8|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000172362.1|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3
mm10_v2_chr2_+_52857844_52857868	0.17365	AAUACUG	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chr6_+_29348069_29348123	0.17335	AAUACUG	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr18_+_74065102_74065102	0.172146	AAUACUG	ENSMUST00000066583.1|Gm9925|ENSMUSG00000053861.1|predicted gene 9925
mm10_v2_chr2_+_127008711_127008756	0.171939	AAUACUG	ENSMUST00000110394.1|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1 	ENSMUST00000002063.8|Ap4e1|ENSMUSG00000001998.9|adaptor-related protein complex AP-4, epsilon 1
mm10_v2_chr16_-_74411292_74411430	0.170602	AAUACUG	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr3_-_51560816_51560878	0.170158	AAUACUG	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr13_-_58215615_58215662	0.168212	AAUACUG	ENSMUST00000058735.5|Ubqln1|ENSMUSG00000005312.8|ubiquilin 1 	ENSMUST00000076454.6|Ubqln1|ENSMUSG00000005312.8|ubiquilin 1
mm10_v2_chr5_+_142401484_142401532	0.165806	AAUACUG	ENSMUST00000072837.5|Foxk1|ENSMUSG00000056493.8|forkhead box K1
mm10_v2_chr15_-_38300693_38300715	0.165396	AAUACUG	ENSMUST00000074043.5|Klf10|ENSMUSG00000037465.9|Kruppel-like factor 10
mm10_v2_chr12_+_86241848_86241936	0.162994	AAUACUG	ENSMUST00000071106.4|Gpatch2l|ENSMUSG00000021254.8|G patch domain containing 2 like
mm10_v2_chr6_+_120666388_120666424	0.162221	AAUACUG	ENSMUST00000112686.1|Cecr2|ENSMUSG00000071226.5|cat eye syndrome chromosome region, candidate 2
mm10_v2_chr3_+_58415689_58415689	0.16163	AAUACUG	ENSMUST00000099090.2|Tsc22d2|ENSMUSG00000027806.5|TSC22 domain family, member 2
mm10_v2_chr8_-_26119125_26119233	0.161293	AAUACUG	ENSMUST00000037182.7|Hook3|ENSMUSG00000037234.10|hook homolog 3 (Drosophila)
mm10_v2_chr10_-_81427114_81427187	0.160626	AAUACUG	ENSMUST00000078185.7|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000020461.8|Nfic|ENSMUSG00000055053.11|nuclear factor I/C 	ENSMUST00000105321.3|Nfic|ENSMUSG00000055053.11|nuclear factor I/C
mm10_v2_chr19_+_40831248_40831292	0.160602	AAUACUG	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr2_-_104494400_104494463	0.160293	AAUACUG	ENSMUST00000028600.7|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr16_-_91011093_91011113	0.158178	AAUACUG	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr15_-_31530999_31531069	0.157512	AAUACUG	ENSMUST00000090227.4|March6|ENSMUSG00000039100.9|membrane-associated ring finger (C3HC4) 6
mm10_v2_chr4_+_155601414_155601443	0.1574	AAUACUG	ENSMUST00000105608.2|Slc35e2|ENSMUSG00000042202.9|solute carrier family 35, member E2
mm10_v2_chr7_-_109493627_109493738	0.156269	AAUACUG	ENSMUST00000106739.1|Trim66|ENSMUSG00000031026.8|tripartite motif-containing 66
mm10_v2_chr1_+_37299882_37299937	0.15456	AAUACUG	ENSMUST00000136846.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000027287.4|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000132401.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I
mm10_v2_chr6_-_30693676_30693749	0.153257	AAUACUG	ENSMUST00000169422.1|Cep41|ENSMUSG00000029790.10|centrosomal protein 41 	ENSMUST00000115131.1|Cep41|ENSMUSG00000029790.10|centrosomal protein 41 	ENSMUST00000115130.2|Cep41|ENSMUSG00000029790.10|centrosomal protein 41 	ENSMUST00000031810.8|Cep41|ENSMUSG00000029790.10|centrosomal protein 41
mm10_v2_chr10_-_25200110_25200178	0.152833	AAUACUG	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr12_-_79089623_79089670	0.149577	AAUACUG	ENSMUST00000072154.7|Pigh|ENSMUSG00000021120.10|phosphatidylinositol glycan anchor biosynthesis, class H
mm10_v2_chr1_-_38129618_38129679	0.149424	AAUACUG	ENSMUST00000027251.6|Rev1|ENSMUSG00000026082.6|REV1 homolog (S. cerevisiae)
mm10_v2_chr2_-_167188787_167188815	0.149316	AAUACUG	ENSMUST00000059826.8|Kcnb1|ENSMUSG00000050556.8|potassium voltage gated channel, Shab-related subfamily, member 1
mm10_v2_chr5_-_102069905_102069940	0.148588	AAUACUG	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr14_-_70351354_70351435	0.14834	AAUACUG	ENSMUST00000143153.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000127000.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000068044.7|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14 	ENSMUST00000022688.3|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14
mm10_v2_chr12_+_110485710_110485755	0.147183	AAUACUG	ENSMUST00000084985.3|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform 	ENSMUST00000109832.1|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm10_v2_chr7_+_112679314_112679325	0.146765	AAUACUG	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr3_-_131344892_131344940	0.146566	AAUACUG	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr14_-_121797670_121797753	0.14643	AAUACUG	ENSMUST00000100299.3|Dock9|ENSMUSG00000025558.9|dedicator of cytokinesis 9
mm10_v2_chr9_+_51765325_51765364	0.145038	AAUACUG	ENSMUST00000065496.5|Arhgap20|ENSMUSG00000053199.7|Rho GTPase activating protein 20
mm10_v2_chr4_-_41569502_41569551	0.142211	AAUACUG	ENSMUST00000108049.2|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108052.3|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A 	ENSMUST00000108050.1|Fam219a|ENSMUSG00000028439.8|family with sequence similarity 219, member A
mm10_v2_chr15_+_81400132_81400215	0.140486	AAUACUG	ENSMUST00000163754.1|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative 	ENSMUST00000041609.4|Xpnpep3|ENSMUSG00000022401.5|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
mm10_v2_chr17_+_87107621_87107684	0.140433	AAUACUG	ENSMUST00000041369.6|Socs5|ENSMUSG00000037104.8|suppressor of cytokine signaling 5
mm10_v2_chr9_-_44767792_44767845	0.140285	AAUACUG	ENSMUST00000034607.9|Arcn1|ENSMUSG00000032096.9|archain 1
mm10_v2_chr6_+_8948608_8948619	0.139917	AAUACUG	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr4_-_108833608_108833626	0.13936	AAUACUG	ENSMUST00000102742.4|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr18_-_40219324_40219399	0.139173	AAUACUG	ENSMUST00000025364.4|Yipf5|ENSMUSG00000024487.4|Yip1 domain family, member 5
mm10_v2_chr11_-_107131922_107131954	0.136616	AAUACUG	ENSMUST00000057892.8|Bptf|ENSMUSG00000040481.10|bromodomain PHD finger transcription factor
mm10_v2_chr2_+_52072823_52072854	0.136317	AAUACUG	ENSMUST00000112693.2|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast) 	ENSMUST00000069794.5|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast)
mm10_v2_chr1_+_178187417_178187713	0.135359	AAUACUG	ENSMUST00000161075.1|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2 	ENSMUST00000027783.7|Desi2|ENSMUSG00000026502.7|desumoylating isopeptidase 2
mm10_v2_chr9_+_47530173_47530373	0.134692	AAUACUG	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr13_+_104287855_104287882	0.129487	AAUACUG	ENSMUST00000065766.6|Adamts6|ENSMUSG00000046169.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm10_v2_chr18_-_12236301_12236405	0.129408	AAUACUG	ENSMUST00000025279.5|Npc1|ENSMUSG00000024413.7|Niemann Pick type C1
mm10_v2_chr5_-_149636331_149636376	0.1292	AAUACUG	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr10_-_67285180_67285316	0.127467	AAUACUG	ENSMUST00000159002.1|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2 	ENSMUST00000077839.6|Nrbf2|ENSMUSG00000075000.5|nuclear receptor binding factor 2
mm10_v2_chr1_-_52233211_52233232	0.12719	AAUACUG	ENSMUST00000114513.2|Gls|ENSMUSG00000026103.8|glutaminase 	ENSMUST00000114510.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr11_-_108343917_108343941	0.127131	AAUACUG	ENSMUST00000059595.4|Prkca|ENSMUSG00000050965.8|protein kinase C, alpha
mm10_v2_chr3_+_19188099_19188110	0.124242	AAUACUG	ENSMUST00000130645.1|Mtfr1|ENSMUSG00000027601.7|mitochondrial fission regulator 1
mm10_v2_chr16_-_96082389_96082481	0.123409	AAUACUG	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr12_-_111713185_111713257	0.117172	AAUACUG	ENSMUST00000054636.6|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr18_-_88894322_88894371	0.114968	AAUACUG	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr3_+_121426495_121426541	0.114159	AAUACUG	ENSMUST00000029773.8|Cnn3|ENSMUSG00000053931.7|calponin 3, acidic
mm10_v2_chr2_-_136387929_136387985	0.114134	AAUACUG	ENSMUST00000035264.2|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7 	ENSMUST00000077200.3|Pak7|ENSMUSG00000039913.6|p21 protein (Cdc42/Rac)-activated kinase 7
mm10_v2_chr16_+_13358375_13358439	0.113852	AAUACUG	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr2_+_22622183_22622205	0.112543	AAUACUG	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr14_-_63245219_63245271	0.111696	AAUACUG	ENSMUST00000118022.1|Gata4|ENSMUSG00000021944.9|GATA binding protein 4 	ENSMUST00000067417.3|Gata4|ENSMUSG00000021944.9|GATA binding protein 4
mm10_v2_chr8_+_78509319_78509399	0.109734	AAUACUG	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr7_-_128461630_128461672	0.108799	AAUACUG	ENSMUST00000106226.2|Tial1|ENSMUSG00000030846.9|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm10_v2_chr11_-_118909487_118909575	0.108057	AAUACUG	ENSMUST00000117731.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000106278.2|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000120061.1|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3 	ENSMUST00000017576.4|Rbfox3|ENSMUSG00000025576.11|RNA binding protein, fox-1 homolog (C. elegans) 3
mm10_v2_chr2_+_90745370_90745469	0.108023	AAUACUG	ENSMUST00000013759.5|Fnbp4|ENSMUSG00000008200.8|formin binding protein 4
mm10_v2_chr5_-_147725988_147726023	0.107823	AAUACUG	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr13_+_24801657_24801657	0.10762	AAUACUG	ENSMUST00000019276.4|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr9_-_65908676_65908798	0.107605	AAUACUG	ENSMUST00000119245.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000134338.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000179395.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4
mm10_v2_chr17_+_34894515_34894573	0.107131	AAUACUG	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr12_+_81859964_81860036	0.105821	AAUACUG	ENSMUST00000021567.5|Pcnx|ENSMUSG00000021140.8|pecanex homolog (Drosophila)
mm10_v2_chr16_+_32332238_32332266	0.10381	AAUACUG	ENSMUST00000115151.3|Ubxn7|ENSMUSG00000053774.8|UBX domain protein 7
mm10_v2_chr13_+_49341549_49341623	0.10266	AAUACUG	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr1_+_64532790_64532815	0.102598	AAUACUG	ENSMUST00000049932.5|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000087366.4|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1 	ENSMUST00000171164.1|Creb1|ENSMUSG00000025958.8|cAMP responsive element binding protein 1
mm10_v2_chr12_-_51971289_51971326	0.101184	AAUACUG	ENSMUST00000040583.5|Heatr5a|ENSMUSG00000035181.5|HEAT repeat containing 5A
mm10_v2_chr13_-_46727932_46728005	0.101016	AAUACUG	ENSMUST00000021803.9|Nup153|ENSMUSG00000021374.9|nucleoporin 153
mm10_v2_chr19_-_17837620_17837642	0.100063	AAUACUG	ENSMUST00000025618.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5 	ENSMUST00000050715.8|Pcsk5|ENSMUSG00000024713.9|proprotein convertase subtilisin/kexin type 5
mm10_v2_chr4_+_11704439_11704457	0.0990901	AAUACUG	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr18_+_46741903_46741930	0.0981845	AAUACUG	ENSMUST00000025357.7|Ap3s1|ENSMUSG00000024480.7|adaptor-related protein complex 3, sigma 1 subunit
mm10_v2_chr11_+_75732869_75732975	0.0899941	AAUACUG	ENSMUST00000067664.3|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr1_-_54194048_54194048	0.0872385	AAUACUG	ENSMUST00000120904.1|Hecw2|ENSMUSG00000042807.9|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chr5_-_23616528_23616597	0.0870533	AAUACUG	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr11_-_102556122_102556199	0.0848029	AAUACUG	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr16_-_50432340_50432409	0.084113	AAUACUG	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr9_-_67559703_67559703	0.0813602	AAUACUG	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr9_+_78113275_78113346	0.080877	AAUACUG	ENSMUST00000009972.5|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000117330.1|Ick|ENSMUSG00000009828.9|intestinal cell kinase 	ENSMUST00000044551.7|Ick|ENSMUSG00000009828.9|intestinal cell kinase
mm10_v2_chrX_+_9885622_9885622	0.0803333	AAUACUG	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr9_-_51008936_51009080	0.0797525	AAUACUG	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chr7_-_90457167_90457229	0.0786545	AAUACUG	ENSMUST00000032844.5|Tmem126a|ENSMUSG00000030615.5|transmembrane protein 126A
mm10_v2_chr16_-_22265950_22266005	0.0777611	AAUACUG	ENSMUST00000161286.1|Tra2b|ENSMUSG00000022858.9|transformer 2 beta homolog (Drosophila)
mm10_v2_chr1_+_57774842_57774932	0.076765	AAUACUG	ENSMUST00000167085.1|Spats2l|ENSMUSG00000038305.8|spermatogenesis associated, serine-rich 2-like
mm10_v2_chrX_-_13846508_13846591	0.0758565	AAUACUG	ENSMUST00000115436.2|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000033321.4|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family) 	ENSMUST00000115438.3|Cask|ENSMUSG00000031012.11|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm10_v2_chr10_-_8886033_8886076	0.0754703	AAUACUG	ENSMUST00000015449.5|Sash1|ENSMUSG00000015305.5|SAM and SH3 domain containing 1
mm10_v2_chr2_-_112368021_112368036	0.0749074	AAUACUG	ENSMUST00000028551.3|Emc4|ENSMUSG00000027131.3|ER membrane protein complex subunit 4
mm10_v2_chr6_-_120038647_120038699	0.0748624	AAUACUG	ENSMUST00000088646.5|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000177761.1|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000088644.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1 	ENSMUST00000060043.6|Wnk1|ENSMUSG00000045962.10|WNK lysine deficient protein kinase 1
mm10_v2_chrX_-_165327376_165327421	0.0723813	AAUACUG	ENSMUST00000058787.8|Glra2|ENSMUSG00000018589.8|glycine receptor, alpha 2 subunit
mm10_v2_chr17_+_84957993_84958018	0.0690634	AAUACUG	ENSMUST00000080217.6|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform 	ENSMUST00000112304.2|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform
mm10_v2_chr3_+_68468162_68468209	0.0688809	AAUACUG	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr15_+_96287518_96287604	0.0667591	AAUACUG	ENSMUST00000134985.2|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like) 	ENSMUST00000096250.4|Arid2|ENSMUSG00000033237.12|AT rich interactive domain 2 (ARID, RFX-like)
mm10_v2_chr10_-_91082653_91082662	0.066126	AAUACUG	ENSMUST00000159110.1|Apaf1|ENSMUSG00000019979.6|apoptotic peptidase activating factor 1
mm10_v2_chr9_-_52679429_52679429	0.064483	AAUACUG	ENSMUST00000098768.2|AI593442|ENSMUSG00000078307.2|expressed sequence AI593442
mm10_v2_chr3_+_60501252_60501275	0.0644429	AAUACUG	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr8_-_115707778_115707794	0.0633272	AAUACUG	ENSMUST00000109104.1|Maf|ENSMUSG00000055435.6|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm10_v2_chr14_-_57746044_57746144	0.0621933	AAUACUG	ENSMUST00000173990.1|Lats2|ENSMUSG00000021959.9|large tumor suppressor 2 	ENSMUST00000022531.7|Lats2|ENSMUSG00000021959.9|large tumor suppressor 2
mm10_v2_chr11_-_106920681_106920735	0.0614633	AAUACUG	ENSMUST00000103067.3|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr18_+_69345721_69345811	0.0596951	AAUACUG	ENSMUST00000078486.6|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114982.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr6_+_86849488_86849628	0.0595177	AAUACUG	ENSMUST00000089519.6|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1 	ENSMUST00000113668.1|Aak1|ENSMUSG00000057230.7|AP2 associated kinase 1
mm10_v2_chr19_-_31765027_31765079	0.0583699	AAUACUG	ENSMUST00000065067.6|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr2_+_128967383_128967443	0.0544451	AAUACUG	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr10_-_13324160_13324242	0.0544336	AAUACUG	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr4_-_126429501_126429556	0.0535135	AAUACUG	ENSMUST00000069097.6|Ago3|ENSMUSG00000028842.9|argonaute RISC catalytic subunit 3
mm10_v2_chr6_-_97617536_97617597	0.0521437	AAUACUG	ENSMUST00000113355.2|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr14_-_74947865_74947883	0.0521258	AAUACUG	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr4_-_95052188_95052222	0.0511185	AAUACUG	ENSMUST00000107094.1|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr9_-_71592346_71592372	0.0510291	AAUACUG	ENSMUST00000093823.1|Myzap|ENSMUSG00000041361.7|myocardial zonula adherens protein
mm10_v2_chr5_-_121191365_121191400	0.0506254	AAUACUG	ENSMUST00000100770.2|Ptpn11|ENSMUSG00000043733.8|protein tyrosine phosphatase, non-receptor type 11 	ENSMUST00000054547.7|Ptpn11|ENSMUSG00000043733.8|protein tyrosine phosphatase, non-receptor type 11
mm10_v2_chr11_+_52764634_52764693	0.0481021	AAUACUG	ENSMUST00000036796.7|Fstl4|ENSMUSG00000036264.9|follistatin-like 4
mm10_v2_chr4_-_109476666_109476727	0.0470359	AAUACUG	ENSMUST00000030284.3|Rnf11|ENSMUSG00000028557.4|ring finger protein 11
mm10_v2_chr3_+_28781305_28781344	0.0469608	AAUACUG	ENSMUST00000060500.7|Eif5a2|ENSMUSG00000050192.7|eukaryotic translation initiation factor 5A2
mm10_v2_chr14_+_65358661_65358691	0.0434399	AAUACUG	ENSMUST00000066994.6|Zfp395|ENSMUSG00000034522.9|zinc finger protein 395
mm10_v2_chr13_-_43480973_43481005	0.0395922	AAUACUG	ENSMUST00000144326.2|Ranbp9|ENSMUSG00000038546.8|RAN binding protein 9
mm10_v2_chr3_-_51277470_51277514	0.0391699	AAUACUG	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr11_+_58104229_58104366	0.0388373	AAUACUG	ENSMUST00000108843.1|Cnot8|ENSMUSG00000020515.7|CCR4-NOT transcription complex, subunit 8 	ENSMUST00000134896.1|Cnot8|ENSMUSG00000020515.7|CCR4-NOT transcription complex, subunit 8
mm10_v2_chr11_+_109649376_109649437	0.0371807	AAUACUG	ENSMUST00000106677.1|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr18_+_14783238_14783259	0.0369627	AAUACUG	ENSMUST00000169862.1|Taf4b|ENSMUSG00000054321.6|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr10_-_117148474_117148510	0.0368353	AAUACUG	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr6_+_108783059_108783116	0.0364065	AAUACUG	ENSMUST00000032196.6|Arl8b|ENSMUSG00000030105.6|ADP-ribosylation factor-like 8B
mm10_v2_chr5_+_129941949_129942113	0.0360788	AAUACUG	ENSMUST00000051758.7|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1 	ENSMUST00000073945.4|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1
mm10_v2_chr9_-_66919646_66919710	0.0348429	AAUACUG	ENSMUST00000041139.7|Rab8b|ENSMUSG00000036943.8|RAB8B, member RAS oncogene family
mm10_v2_chr7_-_109986445_109986480	0.0300876	AAUACUG	ENSMUST00000094097.5|Tmem41b|ENSMUSG00000047554.7|transmembrane protein 41B
mm10_v2_chr5_+_15934685_15934696	0.0261064	AAUACUG	ENSMUST00000078272.6|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000180204.1|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000167946.2|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000101581.3|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1 	ENSMUST00000039370.7|Cacna2d1|ENSMUSG00000040118.9|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm10_v2_chr11_-_22982090_22982382	0.0243605	AAUACUG	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr17_+_49428359_49428445	0.0239529	AAUACUG	ENSMUST00000165390.2|Mocs1|ENSMUSG00000064120.7|molybdenum cofactor synthesis 1 	ENSMUST00000024797.9|Mocs1|ENSMUSG00000064120.7|molybdenum cofactor synthesis 1 	ENSMUST00000173033.1|Mocs1|ENSMUSG00000064120.7|molybdenum cofactor synthesis 1
mm10_v2_chr8_-_111259192_111259221	0.023148	AAUACUG	ENSMUST00000169020.1|Glg1|ENSMUSG00000003316.8|golgi apparatus protein 1 	ENSMUST00000003404.8|Glg1|ENSMUSG00000003316.8|golgi apparatus protein 1
mm10_v2_chr1_-_153332724_153332804	0.0228402	AAUACUG	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr11_-_120633594_120633605	0.0212422	AAUACUG	ENSMUST00000058162.7|Mafg|ENSMUSG00000051510.7|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm10_v2_chr1_+_104768510_104768529	0.0200224	AAUACUG	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr7_-_121707253_121707460	0.0191063	AAUACUG	ENSMUST00000046929.6|Usp31|ENSMUSG00000063317.6|ubiquitin specific peptidase 31
mm10_v2_chr9_+_108306205_108306267	0.0184416	AAUACUG	ENSMUST00000007959.8|Rhoa|ENSMUSG00000007815.8|ras homolog gene family, member A
mm10_v2_chr6_-_22356068_22356175	0.0173439	AAUACUG	ENSMUST00000163963.1|Fam3c|ENSMUSG00000029672.10|family with sequence similarity 3, member C 	ENSMUST00000165576.1|Fam3c|ENSMUSG00000029672.10|family with sequence similarity 3, member C
mm10_v2_chr10_-_30655859_30655868	0.0165302	AAUACUG	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr18_-_20746402_20746422	0.0163228	AAUACUG	ENSMUST00000070080.5|B4galt6|ENSMUSG00000056124.5|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm10_v2_chr3_-_119783262_119783388	0.0147587	AAUACUG	ENSMUST00000029780.7|Ptbp2|ENSMUSG00000028134.7|polypyrimidine tract binding protein 2
mm10_v2_chr2_-_6884975_6884996	0.0127639	AAUACUG	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr4_+_59805829_59805914	0.0114838	AAUACUG	ENSMUST00000030080.6|Snx30|ENSMUSG00000028385.8|sorting nexin family member 30
mm10_v2_chr9_-_108263887_108263965	0.0113619	AAUACUG	ENSMUST00000166905.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1 	ENSMUST00000080435.2|Dag1|ENSMUSG00000039952.9|dystroglycan 1
mm10_v2_chr8_-_80880479_80880499	0.0102549	AAUACUG	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chr2_+_168081004_168081035	0.00943643	AAUACUG	ENSMUST00000052125.6|Pard6b|ENSMUSG00000044641.7|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm10_v2_chr9_-_22389113_22389206	0.00789414	AAUACUG	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr5_+_124629050_124629097	0.00760455	AAUACUG	ENSMUST00000037865.8|Atp6v0a2|ENSMUSG00000038023.8|ATPase, H+ transporting, lysosomal V0 subunit A2
mm10_v2_chr2_+_124610573_124610613	0.00613917	AAUACUG	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr17_-_78418083_78418131	0.00483616	AAUACUG	ENSMUST00000070039.7|Fez2|ENSMUSG00000056121.9|fasciculation and elongation protein zeta 2 (zygin II) 	ENSMUST00000112487.1|Fez2|ENSMUSG00000056121.9|fasciculation and elongation protein zeta 2 (zygin II)
mm10_v2_chr1_+_160978576_160978606	0.00271728	AAUACUG	ENSMUST00000064725.5|Serpinc1|ENSMUSG00000026715.7|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm10_v2_chr19_+_6046576_6046662	0.00182308	AAUACUG	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
