mm10_v2_chr15_-_76669811_76669948	2.07278	AAGGUGC	ENSMUST00000037824.4|Foxh1|ENSMUSG00000033837.4|forkhead box H1
mm10_v2_chr16_-_92826004_92826080	0.999615	AAGGUGC	ENSMUST00000023673.7|Runx1|ENSMUSG00000022952.10|runt related transcription factor 1
mm10_v2_chr16_-_22163299_22163299	0.917615	AAGGUGC	ENSMUST00000100052.4|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr7_-_116038734_116038750	0.840029	AAGGUGC	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr5_-_73256555_73256636	0.742382	AAGGUGC	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr10_-_78244602_78244676	0.735858	AAGGUGC	ENSMUST00000000384.6|Trappc10|ENSMUSG00000000374.7|trafficking protein particle complex 10
mm10_v2_chr1_-_161876656_161876682	0.711762	AAGGUGC	ENSMUST00000048377.5|Suco|ENSMUSG00000040297.7|SUN domain containing ossification factor
mm10_v2_chr2_+_118111876_118111899	0.686475	AAGGUGC	ENSMUST00000039559.8|Thbs1|ENSMUSG00000040152.8|thrombospondin 1
mm10_v2_chrX_+_9199865_9199907	0.680644	AAGGUGC	ENSMUST00000069763.2|Lancl3|ENSMUSG00000047344.9|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm10_v2_chr2_-_34913976_34914043	0.671108	AAGGUGC	ENSMUST00000028232.3|Phf19|ENSMUSG00000026873.3|PHD finger protein 19
mm10_v2_chr17_-_29888570_29888629	0.571346	AAGGUGC	ENSMUST00000171691.1|Mdga1|ENSMUSG00000043557.9|MAM domain containing glycosylphosphatidylinositol anchor 1
mm10_v2_chr2_+_156420837_156420909	0.543558	AAGGUGC	ENSMUST00000103137.3|Epb4.1l1|ENSMUSG00000027624.11|erythrocyte protein band 4.1-like 1
mm10_v2_chr2_+_164074122_164074218	0.532533	AAGGUGC	ENSMUST00000018353.7|Stk4|ENSMUSG00000018209.9|serine/threonine kinase 4
mm10_v2_chr1_+_170644523_170644570	0.525308	AAGGUGC	ENSMUST00000046792.8|Olfml2b|ENSMUSG00000038463.8|olfactomedin-like 2B
mm10_v2_chr4_-_134018829_134018841	0.511204	AAGGUGC	ENSMUST00000051674.2|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr1_-_97661950_97662074	0.486258	AAGGUGC	ENSMUST00000053033.7|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed 	ENSMUST00000149927.1|D1Ertd622e|ENSMUSG00000044768.10|DNA segment, Chr 1, ERATO Doi 622, expressed
mm10_v2_chr3_+_105452326_105452365	0.438028	AAGGUGC	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr8_-_35495487_35495545	0.414558	AAGGUGC	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr5_+_96997676_96997766	0.407244	AAGGUGC	ENSMUST00000112974.1|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase 	ENSMUST00000035635.7|Bmp2k|ENSMUSG00000034663.7|BMP2 inducible kinase
mm10_v2_chr5_+_75574916_75575001	0.397838	AAGGUGC	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr8_-_120589304_120589304	0.378323	AAGGUGC	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr14_+_47472547_47472625	0.348707	AAGGUGC	ENSMUST00000168833.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000163324.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000043112.7|Fbxo34|ENSMUSG00000037536.7|F-box protein 34
mm10_v2_chr19_+_53140430_53140449	0.341981	AAGGUGC	ENSMUST00000111741.2|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr15_+_80711292_80711340	0.33697	AAGGUGC	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr15_+_73723131_73723151	0.33622	AAGGUGC	ENSMUST00000165541.1|Ptp4a3|ENSMUSG00000059895.6|protein tyrosine phosphatase 4a3 	ENSMUST00000167582.1|Ptp4a3|ENSMUSG00000059895.6|protein tyrosine phosphatase 4a3
mm10_v2_chr6_+_119236507_119236532	0.333995	AAGGUGC	ENSMUST00000037434.6|Cacna2d4|ENSMUSG00000041460.8|calcium channel, voltage-dependent, alpha 2/delta subunit 4
mm10_v2_chr13_+_109903089_109903110	0.325798	AAGGUGC	ENSMUST00000120664.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr10_+_40349265_40349387	0.322265	AAGGUGC	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr1_-_63114516_63114667	0.269065	AAGGUGC	ENSMUST00000097718.2|Ino80d|ENSMUSG00000040865.9|INO80 complex subunit D
mm10_v2_chr10_-_53379816_53379858	0.260874	AAGGUGC	ENSMUST00000095691.5|Cep85l|ENSMUSG00000038594.8|centrosomal protein 85-like
mm10_v2_chr9_-_14381242_14381242	0.249247	AAGGUGC	ENSMUST00000167549.1|Endod1|ENSMUSG00000037419.8|endonuclease domain containing 1
mm10_v2_chr11_+_29373618_29373777	0.244284	AAGGUGC	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr15_-_12592556_12592556	0.235992	AAGGUGC	ENSMUST00000075317.5|Pdzd2|ENSMUSG00000022197.9|PDZ domain containing 2
mm10_v2_chr10_-_19015347_19015410	0.223862	AAGGUGC	ENSMUST00000019997.4|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr16_-_78376758_78376818	0.213714	AAGGUGC	ENSMUST00000023570.7|Btg3|ENSMUSG00000022863.8|B cell translocation gene 3
mm10_v2_chr3_-_9610074_9610086	0.213086	AAGGUGC	ENSMUST00000041124.7|Zfp704|ENSMUSG00000040209.7|zinc finger protein 704
mm10_v2_chr3_-_30969399_30969425	0.21174	AAGGUGC	ENSMUST00000177992.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000129817.2|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000168645.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000108255.1|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000064718.5|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila) 	ENSMUST00000099163.3|Phc3|ENSMUSG00000037652.9|polyhomeotic-like 3 (Drosophila)
mm10_v2_chr6_+_52713729_52713800	0.208393	AAGGUGC	ENSMUST00000080723.4|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1 	ENSMUST00000149588.1|Tax1bp1|ENSMUSG00000004535.6|Tax1 (human T cell leukemia virus type I) binding protein 1
mm10_v2_chr1_+_74409376_74409399	0.205617	AAGGUGC	ENSMUST00000027366.6|Vil1|ENSMUSG00000026175.6|villin 1
mm10_v2_chr12_+_52516077_52516077	0.200366	AAGGUGC	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr12_-_15816762_15816881	0.199593	AAGGUGC	ENSMUST00000020922.7|Trib2|ENSMUSG00000020601.7|tribbles homolog 2 (Drosophila)
mm10_v2_chr6_-_25690729_25690729	0.195562	AAGGUGC	ENSMUST00000054867.6|Gpr37|ENSMUSG00000039904.8|G protein-coupled receptor 37
mm10_v2_chr9_+_121760000_121760061	0.189957	AAGGUGC	ENSMUST00000093772.3|Zfp651|ENSMUSG00000013419.6|zinc finger protein 651
mm10_v2_chr3_+_60501252_60501275	0.189044	AAGGUGC	ENSMUST00000099087.2|Mbnl1|ENSMUSG00000027763.8|muscleblind-like 1 (Drosophila)
mm10_v2_chr19_-_59943647_59943678	0.186062	AAGGUGC	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr18_+_53472981_53472981	0.181938	AAGGUGC	ENSMUST00000115399.1|Prdm6|ENSMUSG00000069378.7|PR domain containing 6
mm10_v2_chr5_+_137518880_137518880	0.178982	AAGGUGC	ENSMUST00000031727.7|Gigyf1|ENSMUSG00000029714.7|GRB10 interacting GYF protein 1
mm10_v2_chr13_-_111808938_111809018	0.168651	AAGGUGC	ENSMUST00000109267.2|Map3k1|ENSMUSG00000021754.11|mitogen-activated protein kinase kinase kinase 1
mm10_v2_chr5_-_69592311_69592337	0.1581	AAGGUGC	ENSMUST00000031117.6|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr13_+_60211933_60211933	0.156515	AAGGUGC	ENSMUST00000060705.2|Gm5084|ENSMUSG00000050765.2|predicted gene 5084
mm10_v2_chr8_-_84687839_84687884	0.148529	AAGGUGC	ENSMUST00000001975.4|Nacc1|ENSMUSG00000001910.4|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
mm10_v2_chr13_+_41606216_41606216	0.145514	AAGGUGC	ENSMUST00000129449.1|Tmem170b|ENSMUSG00000087370.2|transmembrane protein 170B
mm10_v2_chr3_-_59344256_59344367	0.139218	AAGGUGC	ENSMUST00000039419.6|Igsf10|ENSMUSG00000036334.7|immunoglobulin superfamily, member 10
mm10_v2_chr16_+_94085226_94085260	0.135894	AAGGUGC	ENSMUST00000072182.7|Sim2|ENSMUSG00000062713.7|single-minded homolog 2 (Drosophila)
mm10_v2_chr5_+_23434435_23434471	0.133119	AAGGUGC	ENSMUST00000094962.2|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E 	ENSMUST00000115128.1|Kmt2e|ENSMUSG00000029004.9|lysine (K)-specific methyltransferase 2E
mm10_v2_chr13_-_93499803_93499825	0.131374	AAGGUGC	ENSMUST00000065537.7|Jmy|ENSMUSG00000021690.9|junction-mediating and regulatory protein
mm10_v2_chrX_-_108834303_108834381	0.126367	AAGGUGC	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr4_-_119492563_119492628	0.121741	AAGGUGC	ENSMUST00000049994.7|Rimkla|ENSMUSG00000048899.8|ribosomal modification protein rimK-like family member A
mm10_v2_chr13_-_41487306_41487346	0.120238	AAGGUGC	ENSMUST00000021794.6|Nedd9|ENSMUSG00000021365.8|neural precursor cell expressed, developmentally down-regulated gene 9
mm10_v2_chr10_+_13552894_13552894	0.118333	AAGGUGC	ENSMUST00000019944.8|Adat2|ENSMUSG00000019808.8|adenosine deaminase, tRNA-specific 2
mm10_v2_chr1_-_170215380_170215420	0.117175	AAGGUGC	ENSMUST00000027979.7|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1 	ENSMUST00000123399.1|Uhmk1|ENSMUSG00000026667.8|U2AF homology motif (UHM) kinase 1
mm10_v2_chr11_+_77686155_77686179	0.115549	AAGGUGC	ENSMUST00000100802.4|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2 	ENSMUST00000181023.1|Nufip2|ENSMUSG00000037857.10|nuclear fragile X mental retardation protein interacting protein 2
mm10_v2_chr2_+_65845767_65845799	0.108073	AAGGUGC	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr11_+_32455362_32455438	0.101355	AAGGUGC	ENSMUST00000051053.4|Ubtd2|ENSMUSG00000044949.4|ubiquitin domain containing 2
mm10_v2_chr9_-_53536728_53536747	0.101089	AAGGUGC	ENSMUST00000118282.1|Atm|ENSMUSG00000034218.9|ataxia telangiectasia mutated homolog (human)
mm10_v2_chr13_+_97241096_97241116	0.100866	AAGGUGC	ENSMUST00000041623.7|Enc1|ENSMUSG00000041773.7|ectodermal-neural cortex 1
mm10_v2_chr2_+_19445632_19445663	0.0826755	AAGGUGC	ENSMUST00000028068.2|Ptf1a|ENSMUSG00000026735.2|pancreas specific transcription factor, 1a
mm10_v2_chr7_-_126502380_126502419	0.0810645	AAGGUGC	ENSMUST00000167759.1|Atxn2l|ENSMUSG00000032637.9|ataxin 2-like
mm10_v2_chr16_+_44139821_44139900	0.0769428	AAGGUGC	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr2_+_72285637_72285749	0.0749254	AAGGUGC	ENSMUST00000090824.5|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK 	ENSMUST00000135469.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr1_-_166002591_166002609	0.069163	AAGGUGC	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr11_-_116086929_116086995	0.0685712	AAGGUGC	ENSMUST00000074628.6|Wbp2|ENSMUSG00000034341.11|WW domain binding protein 2 	ENSMUST00000106444.3|Wbp2|ENSMUSG00000034341.11|WW domain binding protein 2
mm10_v2_chr1_+_134560190_134560213	0.0576843	AAGGUGC	ENSMUST00000112198.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B 	ENSMUST00000112197.1|Kdm5b|ENSMUSG00000042207.11|lysine (K)-specific demethylase 5B
mm10_v2_chr12_+_3426857_3426931	0.0538131	AAGGUGC	ENSMUST00000111215.3|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000092003.5|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000144247.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000153102.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila)
mm10_v2_chr10_+_80494835_80494873	0.0507384	AAGGUGC	ENSMUST00000051773.8|Onecut3|ENSMUSG00000045518.8|one cut domain, family member 3
mm10_v2_chr3_+_96697076_96697090	0.0413595	AAGGUGC	ENSMUST00000162778.2|Pias3|ENSMUSG00000028101.12|protein inhibitor of activated STAT 3 	ENSMUST00000064900.9|Pias3|ENSMUSG00000028101.12|protein inhibitor of activated STAT 3
mm10_v2_chr13_-_64153194_64153207	0.0375867	AAGGUGC	ENSMUST00000059817.4|Zfp367|ENSMUSG00000044934.6|zinc finger protein 367 	ENSMUST00000117241.1|Zfp367|ENSMUSG00000044934.6|zinc finger protein 367
mm10_v2_chr3_-_27896360_27896390	0.0369498	AAGGUGC	ENSMUST00000058077.3|Tmem212|ENSMUSG00000043164.3|transmembrane protein 212
mm10_v2_chr1_-_161131428_161131511	0.0328825	AAGGUGC	ENSMUST00000111611.1|Klhl20|ENSMUSG00000026705.10|kelch-like 20
mm10_v2_chr12_+_84875769_84875769	0.0321248	AAGGUGC	ENSMUST00000171853.1|D030025P21Rik|ENSMUSG00000092130.1|RIKEN cDNA D030025P21 gene
mm10_v2_chr11_-_100738153_100738215	0.0321055	AAGGUGC	ENSMUST00000155500.1|Rab5c|ENSMUSG00000019173.5|RAB5C, member RAS oncogene family 	ENSMUST00000107364.1|Rab5c|ENSMUSG00000019173.5|RAB5C, member RAS oncogene family 	ENSMUST00000019317.5|Rab5c|ENSMUSG00000019173.5|RAB5C, member RAS oncogene family
mm10_v2_chr13_-_48870885_48870951	0.0195422	AAGGUGC	ENSMUST00000035540.7|Phf2|ENSMUSG00000038025.7|PHD finger protein 2
mm10_v2_chr16_-_52454074_52454074	0.0146658	AAGGUGC	ENSMUST00000023312.7|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr12_-_91590009_91590056	0.014242	AAGGUGC	ENSMUST00000021345.6|Gtf2a1|ENSMUSG00000020962.7|general transcription factor II A, 1
mm10_v2_chr12_+_12262139_12262157	0.0101319	AAGGUGC	ENSMUST00000069066.6|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A 	ENSMUST00000069005.8|Fam49a|ENSMUSG00000020589.10|family with sequence similarity 49, member A
mm10_v2_chr3_+_88142328_88142483	0.00820821	AAGGUGC	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr1_-_135585314_135585364	0.000958305	AAGGUGC	ENSMUST00000040599.8|Nav1|ENSMUSG00000009418.9|neuron navigator 1 	ENSMUST00000067414.6|Nav1|ENSMUSG00000009418.9|neuron navigator 1
mm10_v2_chr8_-_94601720_94601739	8.65924e-05	AAGGUGC	ENSMUST00000034226.6|Fam192a|ENSMUSG00000031774.7|family with sequence similarity 192, member A
