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avrg: GSE58827: Dynamics of the Mouse Liver
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Results for CUUUGGU
Z-value: 0.63
Motif logo
miRNA associated with seed CUUUGGU
| Name | miRBASE accession |
|---|---|
|
mmu-miR-9-5p
|
MIMAT0000142 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr2_-_126876209 Show fit | 1.16 |
ENSMUST00000103224.3
|
transient receptor potential cation channel, subfamily M, member 7 |
|
| chr3_+_63295815 Show fit | 1.12 |
ENSMUST00000029400.1
|
membrane metallo endopeptidase |
|
| chr7_-_72306595 Show fit | 1.06 |
ENSMUST00000079323.5
|
multiple C2 domains, transmembrane 2 |
|
| chr1_+_166254095 Show fit | 1.01 |
ENSMUST00000111416.1
|
immunoglobulin-like domain containing receptor 2 |
|
| chr15_-_35155750 Show fit | 0.94 |
ENSMUST00000067033.7
ENSMUST00000018476.7 |
serine/threonine kinase 3 |
|
| chr15_+_9140527 Show fit | 0.92 |
ENSMUST00000090380.4
|
LMBR1 domain containing 2 |
|
| chr10_-_52382074 Show fit | 0.90 |
ENSMUST00000020008.8
ENSMUST00000105475.2 |
golgi associated PDZ and coiled-coil motif containing |
|
| chr13_-_64274879 Show fit | 0.90 |
ENSMUST00000109770.1
|
CDC14 cell division cycle 14B |
|
| chr18_+_9707639 Show fit | 0.88 |
ENSMUST00000040069.8
|
collectin sub-family member 12 |
|
| chr11_+_93996082 Show fit | 0.86 |
ENSMUST00000041956.7
|
sperm associated antigen 9 |
Network of associatons between targets according to the STRING database.
First level regulatory network of CUUUGGU
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.3 | GO:1903361 | protein localization to basolateral plasma membrane(GO:1903361) |
| 0.2 | 1.3 | GO:2000973 | regulation of pro-B cell differentiation(GO:2000973) |
| 0.1 | 1.3 | GO:0060352 | cell adhesion molecule production(GO:0060352) |
| 0.3 | 1.2 | GO:0016340 | calcium-dependent cell-matrix adhesion(GO:0016340) |
| 0.2 | 1.2 | GO:0060385 | axonogenesis involved in innervation(GO:0060385) |
| 0.4 | 1.1 | GO:0071492 | cellular response to UV-A(GO:0071492) |
| 0.2 | 1.1 | GO:0019276 | UDP-N-acetylgalactosamine metabolic process(GO:0019276) |
| 0.3 | 1.0 | GO:0010360 | negative regulation of anion channel activity(GO:0010360) |
| 0.1 | 1.0 | GO:2000766 | negative regulation of cytoplasmic translation(GO:2000766) |
| 0.1 | 1.0 | GO:0006491 | N-glycan processing(GO:0006491) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.3 | GO:0097025 | MPP7-DLG1-LIN7 complex(GO:0097025) |
| 0.0 | 1.3 | GO:0030140 | trans-Golgi network transport vesicle(GO:0030140) |
| 0.1 | 1.2 | GO:0031045 | dense core granule(GO:0031045) |
| 0.0 | 1.2 | GO:0034707 | chloride channel complex(GO:0034707) |
| 0.0 | 1.1 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 1.0 | GO:0043196 | varicosity(GO:0043196) |
| 0.0 | 1.0 | GO:0042645 | nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645) |
| 0.0 | 0.9 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
| 0.1 | 0.8 | GO:0030126 | COPI vesicle coat(GO:0030126) |
| 0.1 | 0.8 | GO:0045180 | basal cortex(GO:0045180) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
| 0.2 | 1.3 | GO:0097016 | L27 domain binding(GO:0097016) |
| 0.1 | 1.2 | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571) |
| 0.0 | 1.1 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
| 0.1 | 1.0 | GO:0015271 | outward rectifier potassium channel activity(GO:0015271) |
| 0.1 | 0.9 | GO:0042030 | ATPase inhibitor activity(GO:0042030) |
| 0.1 | 0.9 | GO:0048273 | mitogen-activated protein kinase p38 binding(GO:0048273) |
| 0.1 | 0.9 | GO:0034236 | protein kinase A catalytic subunit binding(GO:0034236) |
| 0.0 | 0.9 | GO:0038187 | signaling pattern recognition receptor activity(GO:0008329) pattern recognition receptor activity(GO:0038187) |
| 0.2 | 0.8 | GO:0004594 | pantothenate kinase activity(GO:0004594) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
| 0.0 | 1.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
| 0.0 | 0.9 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.0 | 0.9 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.0 | 0.8 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
| 0.0 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.6 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
| 0.0 | 0.6 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
| 0.0 | 0.6 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
| 0.0 | 0.6 | PID NOTCH PATHWAY | Notch signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.4 | REACTOME TRANS GOLGI NETWORK VESICLE BUDDING | Genes involved in trans-Golgi Network Vesicle Budding |
| 0.0 | 1.2 | REACTOME REGULATION OF BETA CELL DEVELOPMENT | Genes involved in Regulation of beta-cell development |
| 0.1 | 1.1 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
| 0.0 | 1.0 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 1.0 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
| 0.1 | 0.9 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 0.9 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
| 0.0 | 0.9 | REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT | Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT) |
| 0.0 | 0.9 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
| 0.0 | 0.9 | REACTOME GPVI MEDIATED ACTIVATION CASCADE | Genes involved in GPVI-mediated activation cascade |