avrg: GSE58827: Dynamics of the Mouse Liver
Gene Symbol | Gene ID | Gene Info |
---|---|---|
Thrb
|
ENSMUSG00000021779.10 | thyroid hormone receptor beta |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Thrb | mm10_v2_chr14_+_17981633_17981644 | 0.53 | 9.7e-04 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.9 | 11.8 | GO:0006571 | tyrosine biosynthetic process(GO:0006571) aromatic amino acid family biosynthetic process(GO:0009073) aromatic amino acid family biosynthetic process, prephenate pathway(GO:0009095) |
2.2 | 10.9 | GO:2000255 | negative regulation of male germ cell proliferation(GO:2000255) |
2.1 | 14.9 | GO:0042738 | exogenous drug catabolic process(GO:0042738) |
1.5 | 7.5 | GO:0001692 | histamine metabolic process(GO:0001692) |
1.4 | 7.2 | GO:0005984 | disaccharide metabolic process(GO:0005984) |
1.3 | 6.5 | GO:0015886 | heme transport(GO:0015886) |
1.1 | 13.5 | GO:0098789 | pre-mRNA cleavage required for polyadenylation(GO:0098789) |
1.1 | 3.2 | GO:0061402 | positive regulation of transcription from RNA polymerase II promoter in response to acidic pH(GO:0061402) regulation of glutamine transport(GO:2000485) |
0.7 | 2.9 | GO:1900535 | medium-chain fatty-acyl-CoA catabolic process(GO:0036114) long-chain fatty-acyl-CoA catabolic process(GO:0036116) palmitic acid metabolic process(GO:1900533) palmitic acid biosynthetic process(GO:1900535) |
0.6 | 1.9 | GO:0046900 | tetrahydrofolylpolyglutamate metabolic process(GO:0046900) |
0.6 | 1.7 | GO:0044208 | 'de novo' AMP biosynthetic process(GO:0044208) |
0.4 | 6.3 | GO:0016127 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.4 | 17.5 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
0.4 | 2.0 | GO:0015788 | UDP-N-acetylglucosamine transport(GO:0015788) |
0.3 | 5.6 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
0.2 | 4.1 | GO:0006309 | apoptotic DNA fragmentation(GO:0006309) programmed cell death involved in cell development(GO:0010623) |
0.2 | 0.8 | GO:0060376 | positive regulation of mast cell differentiation(GO:0060376) |
0.2 | 1.0 | GO:0070459 | prolactin secretion(GO:0070459) |
0.1 | 2.6 | GO:0034219 | carbohydrate transmembrane transport(GO:0034219) |
0.1 | 4.5 | GO:0032007 | negative regulation of TOR signaling(GO:0032007) |
0.0 | 5.1 | GO:0016125 | sterol metabolic process(GO:0016125) |
0.0 | 1.1 | GO:0070979 | protein K11-linked ubiquitination(GO:0070979) |
0.0 | 4.9 | GO:0051291 | protein heterooligomerization(GO:0051291) |
0.0 | 2.4 | GO:0007286 | spermatid development(GO:0007286) |
0.0 | 0.7 | GO:0070936 | protein K48-linked ubiquitination(GO:0070936) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 13.5 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.5 | 5.6 | GO:0005579 | membrane attack complex(GO:0005579) |
0.1 | 4.9 | GO:0048770 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.1 | 10.9 | GO:0005791 | rough endoplasmic reticulum(GO:0005791) |
0.0 | 7.4 | GO:0072562 | blood microparticle(GO:0072562) |
0.0 | 7.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 33.4 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.0 | 3.2 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.7 | 10.9 | GO:0004667 | prostaglandin-D synthase activity(GO:0004667) |
2.4 | 11.8 | GO:0004505 | phenylalanine 4-monooxygenase activity(GO:0004505) |
1.6 | 6.5 | GO:0015232 | heme transporter activity(GO:0015232) |
1.5 | 17.5 | GO:0016151 | nickel cation binding(GO:0016151) |
1.1 | 3.2 | GO:0015182 | L-asparagine transmembrane transporter activity(GO:0015182) |
0.5 | 14.9 | GO:0070330 | aromatase activity(GO:0070330) |
0.4 | 5.6 | GO:0019841 | retinol binding(GO:0019841) |
0.3 | 5.1 | GO:0016863 | intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863) |
0.2 | 13.5 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.2 | 2.9 | GO:0036042 | long-chain fatty acyl-CoA binding(GO:0036042) |
0.2 | 6.3 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
0.1 | 4.9 | GO:0030742 | GTP-dependent protein binding(GO:0030742) |
0.1 | 1.9 | GO:0008242 | omega peptidase activity(GO:0008242) |
0.1 | 14.8 | GO:0052689 | carboxylic ester hydrolase activity(GO:0052689) |
0.1 | 2.0 | GO:0005351 | sugar:proton symporter activity(GO:0005351) |
0.1 | 1.2 | GO:0008484 | sulfuric ester hydrolase activity(GO:0008484) |
0.1 | 2.6 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) carbohydrate transporter activity(GO:1901476) |
0.1 | 4.1 | GO:0004520 | endodeoxyribonuclease activity(GO:0004520) |
0.1 | 7.2 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553) |
0.0 | 1.0 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.0 | 1.7 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
0.0 | 1.9 | GO:0008170 | N-methyltransferase activity(GO:0008170) |
0.0 | 2.4 | GO:0042826 | histone deacetylase binding(GO:0042826) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 0.8 | PID IL5 PATHWAY | IL5-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.4 | 7.2 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.5 | 6.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.2 | 4.9 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.2 | 5.6 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.1 | 1.2 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.1 | 1.7 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.1 | 3.2 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.0 | 11.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.0 | 0.8 | REACTOME IL 7 SIGNALING | Genes involved in Interleukin-7 signaling |
0.0 | 2.0 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |