avrg: GSE58827: Dynamics of the Mouse Liver
Gene Symbol | Gene ID | Gene Info |
---|---|---|
Six4
|
ENSMUSG00000034460.8 | sine oculis-related homeobox 4 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Six4 | mm10_v2_chr12_-_73113407_73113456 | 0.13 | 4.5e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 4.1 | GO:0031509 | telomeric heterochromatin assembly(GO:0031509) negative regulation of chromosome condensation(GO:1902340) |
0.7 | 6.0 | GO:1901748 | leukotriene D4 metabolic process(GO:1901748) leukotriene D4 biosynthetic process(GO:1901750) |
0.7 | 8.0 | GO:0034242 | negative regulation of syncytium formation by plasma membrane fusion(GO:0034242) |
0.5 | 3.6 | GO:0046208 | spermine catabolic process(GO:0046208) |
0.5 | 4.5 | GO:0010587 | miRNA catabolic process(GO:0010587) |
0.3 | 2.7 | GO:1902746 | regulation of lens fiber cell differentiation(GO:1902746) |
0.3 | 1.5 | GO:0090521 | glomerular visceral epithelial cell migration(GO:0090521) |
0.2 | 1.1 | GO:0000454 | snoRNA guided rRNA pseudouridine synthesis(GO:0000454) |
0.2 | 0.6 | GO:0032685 | negative regulation of granulocyte macrophage colony-stimulating factor production(GO:0032685) |
0.1 | 1.8 | GO:0035970 | peptidyl-threonine dephosphorylation(GO:0035970) |
0.1 | 0.9 | GO:2001135 | regulation of endocytic recycling(GO:2001135) |
0.1 | 3.9 | GO:0050907 | detection of chemical stimulus involved in sensory perception(GO:0050907) |
0.1 | 0.6 | GO:0019375 | galactosylceramide biosynthetic process(GO:0006682) galactolipid biosynthetic process(GO:0019375) |
0.0 | 3.5 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
0.0 | 0.9 | GO:0016973 | poly(A)+ mRNA export from nucleus(GO:0016973) |
0.0 | 3.1 | GO:0006400 | tRNA modification(GO:0006400) |
0.0 | 1.2 | GO:0032495 | response to muramyl dipeptide(GO:0032495) |
0.0 | 1.9 | GO:2000036 | regulation of stem cell population maintenance(GO:2000036) |
0.0 | 0.9 | GO:0051457 | maintenance of protein location in nucleus(GO:0051457) |
0.0 | 2.1 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.0 | 2.8 | GO:0038083 | peptidyl-tyrosine autophosphorylation(GO:0038083) |
0.0 | 0.5 | GO:1990403 | embryonic brain development(GO:1990403) |
0.0 | 1.3 | GO:0043001 | Golgi to plasma membrane protein transport(GO:0043001) |
0.0 | 1.1 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 0.8 | GO:0000281 | mitotic cytokinesis(GO:0000281) |
0.0 | 0.7 | GO:0045737 | positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 4.1 | GO:0001740 | Barr body(GO:0001740) |
0.3 | 1.9 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
0.2 | 1.1 | GO:0001651 | dense fibrillar component(GO:0001651) |
0.1 | 1.0 | GO:0005638 | lamin filament(GO:0005638) |
0.1 | 0.9 | GO:0042405 | nuclear inclusion body(GO:0042405) |
0.1 | 4.3 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.1 | 1.2 | GO:0061702 | inflammasome complex(GO:0061702) |
0.0 | 1.1 | GO:0032982 | myosin filament(GO:0032982) |
0.0 | 8.0 | GO:0032993 | protein-DNA complex(GO:0032993) |
0.0 | 2.1 | GO:0034707 | chloride channel complex(GO:0034707) |
0.0 | 1.6 | GO:0031201 | SNARE complex(GO:0031201) |
0.0 | 2.0 | GO:0031519 | PcG protein complex(GO:0031519) |
0.0 | 0.6 | GO:0000242 | pericentriolar material(GO:0000242) |
0.0 | 0.9 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
0.0 | 1.5 | GO:0005643 | nuclear pore(GO:0005643) |
0.0 | 0.4 | GO:0071565 | nBAF complex(GO:0071565) |
0.0 | 0.7 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 3.6 | GO:0046592 | polyamine oxidase activity(GO:0046592) spermine:oxygen oxidoreductase (spermidine-forming) activity(GO:0052901) |
1.0 | 3.1 | GO:0008192 | RNA guanylyltransferase activity(GO:0008192) |
0.5 | 6.0 | GO:0036374 | glutathione hydrolase activity(GO:0036374) |
0.4 | 4.5 | GO:0002151 | G-quadruplex RNA binding(GO:0002151) |
0.4 | 1.8 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
0.2 | 0.7 | GO:0061575 | cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575) |
0.2 | 2.7 | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) |
0.2 | 8.0 | GO:0050699 | WW domain binding(GO:0050699) |
0.2 | 1.1 | GO:0034513 | box H/ACA snoRNA binding(GO:0034513) |
0.1 | 0.6 | GO:0001733 | galactosylceramide sulfotransferase activity(GO:0001733) |
0.1 | 4.1 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
0.1 | 2.8 | GO:0005070 | SH3/SH2 adaptor activity(GO:0005070) |
0.1 | 1.5 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.0 | 0.9 | GO:0005487 | nucleocytoplasmic transporter activity(GO:0005487) |
0.0 | 1.1 | GO:0000146 | microfilament motor activity(GO:0000146) |
0.0 | 1.3 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.0 | 4.1 | GO:0004984 | olfactory receptor activity(GO:0004984) |
0.0 | 0.9 | GO:0005104 | fibroblast growth factor receptor binding(GO:0005104) |
0.0 | 4.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 2.1 | GO:0005254 | chloride channel activity(GO:0005254) |
0.0 | 1.9 | GO:0000980 | RNA polymerase II distal enhancer sequence-specific DNA binding(GO:0000980) |
0.0 | 1.9 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
0.0 | 1.2 | GO:0097110 | scaffold protein binding(GO:0097110) |
0.0 | 0.1 | GO:0050656 | 3'-phosphoadenosine 5'-phosphosulfate binding(GO:0050656) |
0.0 | 3.5 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 1.9 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 1.8 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 2.8 | PID PDGFRB PATHWAY | PDGFR-beta signaling pathway |
0.0 | 1.0 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 0.9 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.6 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.2 | 1.9 | REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA | Genes involved in Activation of Chaperone Genes by ATF6-alpha |
0.1 | 3.5 | REACTOME RAP1 SIGNALLING | Genes involved in Rap1 signalling |
0.1 | 12.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 3.1 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 2.4 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.0 | 0.9 | REACTOME FGFR1 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR1 ligand binding and activation |
0.0 | 0.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
0.0 | 1.1 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 0.6 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |