GSE58827: Dynamics of the Mouse Liver


Results for GAGAUGA

Z-value: 0.18

Motif logo

miRNA associated with seed GAGAUGA

NamemiRBASE accession

Activity profile of GAGAUGA motif

Sorted Z-values of GAGAUGA motif

Promoter Log-likelihood Transcript Gene Gene Info
chr2_+_163054682 0.78 ENSMUST00000018005.3
myeloblastosis oncogene-like 2
chr12_+_113185877 0.37 ENSMUST00000058491.6
transmembrane protein 121
chr14_-_60086832 0.30 ENSMUST00000080368.5
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
chr13_+_46418266 0.29 ENSMUST00000037923.3
RNA binding motif protein 24
chr12_+_24831583 0.28 ENSMUST00000110942.3
membrane bound O-acyltransferase domain containing 2
chr7_+_67952817 0.26 ENSMUST00000005671.8
insulin-like growth factor I receptor
chr19_-_17356631 0.26 ENSMUST00000174236.1
glucosaminyl (N-acetyl) transferase 1, core 2
chr11_-_87359011 0.26 ENSMUST00000055438.4
protein phosphatase 1E (PP2C domain containing)
chr15_-_103255433 0.23 ENSMUST00000075192.6
nuclear factor, erythroid derived 2
chr1_-_95667555 0.21 ENSMUST00000043336.4
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
chr11_-_61494173 0.19 ENSMUST00000101085.2
mitogen-activated protein kinase 7
chrX_-_93832106 0.16 ENSMUST00000045748.6
pyruvate dehydrogenase kinase, isoenzyme 3
chr9_-_108190352 0.15 ENSMUST00000035208.7
chr7_-_116038734 0.14 ENSMUST00000166877.1
SRY-box containing gene 6
chr6_-_82774448 0.13 ENSMUST00000000642.4
hexokinase 2
chr4_+_141420757 0.13 ENSMUST00000102486.4
heat shock protein family, member 7 (cardiovascular)
chr14_-_15438974 0.13 ENSMUST00000055211.4
leucine rich repeat containing 3B
chr12_+_86678685 0.13 ENSMUST00000021681.3
vasohibin 1
chr7_+_58658181 0.13 ENSMUST00000168747.1
ATPase, class V, type 10A
chr15_-_97831460 0.12 ENSMUST00000079838.7
histone deacetylase 7
chr4_+_62965560 0.12 ENSMUST00000030043.6
zinc finger protein 618
chr1_-_72874877 0.12 ENSMUST00000027377.8
insulin-like growth factor binding protein 5
chr3_+_130180882 0.12 ENSMUST00000106353.1
collagen, type XXV, alpha 1
chr9_-_53975246 0.11 ENSMUST00000048409.7
ELMO/CED-12 domain containing 1
chr11_-_96977660 0.11 ENSMUST00000107626.1
Sp2 transcription factor
chr12_-_46818749 0.11 ENSMUST00000021438.6
neuro-oncological ventral antigen 1
chr15_-_50889691 0.10 ENSMUST00000165201.2
trichorhinophalangeal syndrome I (human)
chr12_+_52699297 0.10 ENSMUST00000095737.3
A kinase (PRKA) anchor protein 6
chr5_-_134688568 0.10 ENSMUST00000015137.3
LIM-domain containing, protein kinase
chr15_+_100038635 0.10 ENSMUST00000100203.3
DIP2 disco-interacting protein 2 homolog B (Drosophila)
chr10_+_17796256 0.09 ENSMUST00000037964.6
taxilin beta
chrX_-_142966709 0.09 ENSMUST00000041317.2
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
chr15_-_73184840 0.09 ENSMUST00000044113.10
argonaute RISC catalytic subunit 2
chr4_-_88033328 0.08 ENSMUST00000078090.5
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
chr1_-_45503282 0.08 ENSMUST00000086430.4
collagen, type V, alpha 2
chr6_-_38876163 0.08 ENSMUST00000161779.1
homeodomain interacting protein kinase 2
chrX_+_7822289 0.08 ENSMUST00000009875.4
potassium voltage-gated channel, Shal-related family, member 1
chr15_-_11905609 0.08 ENSMUST00000066529.3
natriuretic peptide receptor 3
chr11_-_88718223 0.07 ENSMUST00000107909.1
musashi RNA-binding protein 2
chr5_-_140649018 0.07 ENSMUST00000042661.3
tweety homolog 3 (Drosophila)
chr5_+_103754154 0.07 ENSMUST00000054979.3
AF4/FMR2 family, member 1
chr6_+_120836201 0.07 ENSMUST00000009256.2
BCL2-like 13 (apoptosis facilitator)
chr12_+_3807017 0.07 ENSMUST00000020991.8
DNA methyltransferase 3A
chr4_+_21776261 0.07 ENSMUST00000065111.8
ubiquitin specific petidase 45
chr15_-_58324161 0.07 ENSMUST00000022985.1
kelch-like 38
chr13_+_15463837 0.07 ENSMUST00000110510.3
GLI-Kruppel family member GLI3
chr4_+_100776664 0.07 ENSMUST00000030257.8
cache domain containing 1
chr8_+_69822429 0.06 ENSMUST00000164890.1
lysophosphatidic acid receptor 2
chrX_-_139871637 0.06 ENSMUST00000033811.7
microrchidia 4
chr13_-_99516537 0.06 ENSMUST00000064762.4
microtubule-associated protein 1B
chr5_+_103425181 0.06 ENSMUST00000048957.9
protein tyrosine phosphatase, non-receptor type 13
chr1_-_97661950 0.06 ENSMUST00000053033.7
DNA segment, Chr 1, ERATO Doi 622, expressed
chr12_+_55565188 0.06 ENSMUST00000080123.1
aldolase 1 A, retrogene 2
chr11_+_61684419 0.06 ENSMUST00000093019.5
family with sequence similarity 83, member G
chr7_+_18925863 0.05 ENSMUST00000172835.1
neuro-oncological ventral antigen 2
chr7_+_75455534 0.05 ENSMUST00000147005.1
A kinase (PRKA) anchor protein 13
chr15_-_103239812 0.05 ENSMUST00000118152.1
chromobox 5
chr2_+_5951440 0.05 ENSMUST00000060092.6
UPF2 regulator of nonsense transcripts homolog (yeast)
chr7_+_45413657 0.05 ENSMUST00000058879.6
neurotrophin 5
chr9_-_35558522 0.05 ENSMUST00000034612.5
DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
chr5_+_142960343 0.05 ENSMUST00000031565.8
fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
chr8_-_105827190 0.04 ENSMUST00000041400.5
RAN binding protein 10
chr10_-_37138863 0.04 ENSMUST00000092584.5
myristoylated alanine rich protein kinase C substrate
chr2_-_153241402 0.04 ENSMUST00000056924.7
pleiomorphic adenoma gene-like 2
chr15_-_102722150 0.04 ENSMUST00000023818.3
calcium binding and coiled coil domain 1
chr4_-_58206596 0.04 ENSMUST00000042850.8
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
chr11_+_115381906 0.04 ENSMUST00000053288.5
cerebellar degeneration-related protein 2-like
chr7_-_122021143 0.04 ENSMUST00000033160.8
golgi associated, gamma adaptin ear containing, ARF binding protein 2
chr4_+_136206365 0.04 ENSMUST00000047526.7
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
chr19_+_53140430 0.04 ENSMUST00000111741.2
adducin 3 (gamma)
chr17_-_12769605 0.04 ENSMUST00000024599.7
insulin-like growth factor 2 receptor
chr1_-_106714217 0.04 ENSMUST00000112751.1
B cell leukemia/lymphoma 2
chr9_-_107289847 0.04 ENSMUST00000035194.2
mitogen-activated protein kinase-activated protein kinase 3
chr7_-_127021205 0.04 ENSMUST00000159916.1
proline-rich transmembrane protein 2
chr7_+_19119853 0.04 ENSMUST00000053109.3
F-box protein 46
chr18_+_44380479 0.04 ENSMUST00000025350.8
DCP2 decapping enzyme homolog (S. cerevisiae)
chr1_-_178337774 0.03 ENSMUST00000037748.7
heterogeneous nuclear ribonucleoprotein U
chr9_-_101251810 0.03 ENSMUST00000075941.5
protein phosphatase 2, regulatory subunit B'', alpha
chr11_-_34783850 0.03 ENSMUST00000093193.5
dedicator of cyto-kinesis 2
chr14_+_60378242 0.03 ENSMUST00000022561.6
APC membrane recruitment 2
chr8_+_79639618 0.03 ENSMUST00000173078.1
OTU domain containing 4
chr2_-_74659861 0.03 ENSMUST00000001867.6
even skipped homeotic gene 2 homolog
chr9_-_53248106 0.03 ENSMUST00000065630.6
DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
chr8_-_115707778 0.03 ENSMUST00000109104.1
avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
chr6_+_100704709 0.03 ENSMUST00000032157.7
glucoside xylosyltransferase 2
chr15_-_100495239 0.02 ENSMUST00000061457.5
cysteine-serine-rich nuclear protein 2
chr3_-_27710413 0.02 ENSMUST00000046157.4
fibronectin type III domain containing 3B
chr19_+_4510472 0.02 ENSMUST00000068004.6
pyruvate carboxylase
chr1_-_21079162 0.02 ENSMUST00000037998.4
translocating chain-associating membrane protein 2
chr4_+_59805829 0.02 ENSMUST00000030080.6
sorting nexin family member 30
chr11_-_47379405 0.02 ENSMUST00000077221.5
sarcoglycan, delta (dystrophin-associated glycoprotein)
chr17_+_3114957 0.02 ENSMUST00000076734.6
SR-related CTD-associated factor 8
chr6_+_8209216 0.02 ENSMUST00000040017.7
missing oocyte, meiosis regulator, homolog (Drosophila)
chr8_+_31111816 0.02 ENSMUST00000046941.7
ring finger protein 122
chr4_+_123201503 0.02 ENSMUST00000068262.5
5'-nucleotidase, cytosolic IA
chr19_-_53390559 0.02 ENSMUST00000025997.5
survival motor neuron domain containing 1
chrX_+_9199865 0.02 ENSMUST00000069763.2
LanC lantibiotic synthetase component C-like 3 (bacterial)
chr1_-_63114516 0.02 ENSMUST00000097718.2
INO80 complex subunit D
chr18_+_42275353 0.02 ENSMUST00000046972.7
RNA binding motif protein 27
chr5_+_32136458 0.02 ENSMUST00000031017.9
fos-like antigen 2
chr17_-_10319324 0.02 ENSMUST00000097414.3
chr1_+_156558844 0.02 ENSMUST00000166172.2
v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
chr12_-_85339346 0.02 ENSMUST00000040992.7
NIMA (never in mitosis gene a)-related expressed kinase 9
chr12_+_107488632 0.02 ENSMUST00000082269.2
RIKEN cDNA 3110018I06 gene
chr2_+_83644435 0.02 ENSMUST00000081591.6
zinc finger CCCH-type containing 15
chr9_-_62537036 0.01 ENSMUST00000048043.5
coronin, actin binding protein, 2B
chr7_-_134938264 0.01 ENSMUST00000171394.1
family with sequence similarity 196, member A
chr12_+_91400990 0.01 ENSMUST00000021346.7
thyroid stimulating hormone receptor
chrX_-_104201126 0.01 ENSMUST00000056502.6
expressed sequence C77370
chr11_+_105589970 0.01 ENSMUST00000168598.1
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr9_+_62677826 0.01 ENSMUST00000034774.8
integrin alpha 11
chr6_-_145250177 0.01 ENSMUST00000111710.1
v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
chr2_+_80292468 0.01 ENSMUST00000057072.4
peroxiredoxin 6B
chr1_+_50927511 0.01 ENSMUST00000081851.3
transmembrane protein with EGF-like and two follistatin-like domains 2
chr11_-_95309557 0.01 ENSMUST00000092766.5
K(lysine) acetyltransferase 7
chr17_+_46202740 0.01 ENSMUST00000087031.5
exportin 5
chr4_+_132274369 0.01 ENSMUST00000030731.4
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr10_+_24595623 0.01 ENSMUST00000176228.1
connective tissue growth factor
chr8_+_84415348 0.01 ENSMUST00000121390.1
calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
chr2_-_150485091 0.01 ENSMUST00000109914.1
zinc finger protein 345
chr2_+_180710117 0.01 ENSMUST00000029090.2
GID complex subunit 8 homolog (S. cerevisiae)
chr11_+_61022560 0.01 ENSMUST00000089184.4
potassium inwardly-rectifying channel, subfamily J, member 12
chr14_+_113314602 0.01 ENSMUST00000072359.6
tropomyosin 3, related sequence 7
chrX_-_144688180 0.01 ENSMUST00000040184.3
transient receptor potential cation channel, subfamily C, member 5
chr6_-_85069449 0.01 ENSMUST00000160783.1
exocyst complex component 6B
chr18_+_73573044 0.01 ENSMUST00000091852.4
mex3 homolog C (C. elegans)
chr12_-_51691883 0.01 ENSMUST00000013130.8
striatin, calmodulin binding protein 3
chr8_-_124949165 0.01 ENSMUST00000034469.5
EGL nine homolog 1 (C. elegans)
chr9_+_44604844 0.01 ENSMUST00000170489.1
DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
chr7_+_97579868 0.01 ENSMUST00000042399.7
remodeling and spacing factor 1
chr9_+_108392820 0.01 ENSMUST00000035234.4
RIKEN cDNA 1700102P08 gene
chr5_+_121397936 0.01 ENSMUST00000042163.8
N(alpha)-acetyltransferase 25, NatB auxiliary subunit
chr11_+_105292637 0.01 ENSMUST00000100335.3
mannose receptor, C type 2
chr5_+_75152274 0.00 ENSMUST00000000476.8
platelet derived growth factor receptor, alpha polypeptide
chr11_+_117654798 0.00 ENSMUST00000106344.1
trinucleotide repeat containing 6C
chr4_-_126968124 0.00 ENSMUST00000106108.2
zinc finger, MYM-type 4
chr11_-_103017167 0.00 ENSMUST00000021313.2
dephospho-CoA kinase domain containing
chrX_+_52912232 0.00 ENSMUST00000078944.6
PHD finger protein 6
chr15_-_93275151 0.00 ENSMUST00000057896.4
glucoside xylosyltransferase 1
chr8_+_40511769 0.00 ENSMUST00000098817.2
vacuolar protein sorting 37A (yeast)
chr13_-_93499803 0.00 ENSMUST00000065537.7
junction-mediating and regulatory protein

Network of associatons between targets according to the STRING database.

First level regulatory network of GAGAUGA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:1903944 regulation of hepatocyte apoptotic process(GO:1903943) negative regulation of hepatocyte apoptotic process(GO:1903944)
0.1 0.2 GO:0070375 ERK5 cascade(GO:0070375)
0.0 0.1 GO:0099526 presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.0 0.2 GO:0010510 regulation of acetyl-CoA biosynthetic process from pyruvate(GO:0010510)
0.0 0.3 GO:0061091 regulation of phospholipid translocation(GO:0061091) positive regulation of phospholipid translocation(GO:0061092)
0.0 0.1 GO:1901491 negative regulation of lymphangiogenesis(GO:1901491)
0.0 0.1 GO:0014734 skeletal muscle hypertrophy(GO:0014734)
0.0 0.1 GO:1901526 negative regulation of mitochondrial membrane permeability(GO:0035795) positive regulation of macromitophagy(GO:1901526) positive regulation of mitophagy in response to mitochondrial depolarization(GO:1904925)
0.0 0.2 GO:0034242 negative regulation of syncytium formation by plasma membrane fusion(GO:0034242)
0.0 0.1 GO:0060364 frontal suture morphogenesis(GO:0060364)
0.0 0.1 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.1 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.0 0.3 GO:0060352 cell adhesion molecule production(GO:0060352)
0.0 0.2 GO:0001574 ganglioside biosynthetic process(GO:0001574)
0.0 0.3 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.0 0.1 GO:1902261 positive regulation of ryanodine-sensitive calcium-release channel activity(GO:0060316) positive regulation of delayed rectifier potassium channel activity(GO:1902261) positive regulation of cAMP-dependent protein kinase activity(GO:2000481)
0.0 0.1 GO:0060385 axonogenesis involved in innervation(GO:0060385)
0.0 0.0 GO:0061193 taste bud development(GO:0061193)
0.0 0.1 GO:2000741 positive regulation of mesenchymal stem cell differentiation(GO:2000741)
0.0 0.8 GO:0090307 mitotic spindle assembly(GO:0090307)
0.0 0.0 GO:2000373 regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000371) positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000373)
0.0 0.0 GO:0019074 viral genome packaging(GO:0019072) viral RNA genome packaging(GO:0019074)
0.0 0.0 GO:0002277 myeloid dendritic cell activation involved in immune response(GO:0002277)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0031523 Myb complex(GO:0031523)
0.0 0.1 GO:1990257 piccolo-bassoon transport vesicle(GO:1990257)
0.0 0.1 GO:0042567 insulin-like growth factor ternary complex(GO:0042567)
0.0 0.1 GO:0014701 junctional sarcoplasmic reticulum membrane(GO:0014701)
0.0 0.3 GO:0035867 alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867)
0.0 0.0 GO:0042585 germinal vesicle(GO:0042585)
0.0 0.0 GO:0044393 microspike(GO:0044393)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0003829 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity(GO:0003829)
0.1 0.8 GO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting(GO:0001135)
0.0 0.3 GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity(GO:0047184)
0.0 0.2 GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740)
0.0 0.2 GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity(GO:0003828)
0.0 0.3 GO:0043559 insulin binding(GO:0043559)
0.0 0.2 GO:0031995 insulin-like growth factor II binding(GO:0031995)
0.0 0.1 GO:0005250 A-type (transient outward) potassium channel activity(GO:0005250)
0.0 0.1 GO:0016941 natriuretic peptide receptor activity(GO:0016941)
0.0 0.1 GO:0008865 fructokinase activity(GO:0008865) mannokinase activity(GO:0019158)
0.0 0.4 GO:0004012 phospholipid-translocating ATPase activity(GO:0004012)
0.0 0.0 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.0 0.2 REACTOME ERKS ARE INACTIVATED Genes involved in ERKs are inactivated
0.0 0.2 REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex
0.0 0.3 REACTOME ACYL CHAIN REMODELLING OF PE Genes involved in Acyl chain remodelling of PE