GSE58827: Dynamics of the Mouse Liver


Results for CCAGCAU

Z-value: 0.12

Motif logo

miRNA associated with seed CCAGCAU

NamemiRBASE accession

Activity profile of CCAGCAU motif

Sorted Z-values of CCAGCAU motif

Promoter Log-likelihood Transcript Gene Gene Info
chr13_+_89540636 0.15 ENSMUST00000022108.7
hyaluronan and proteoglycan link protein 1
chr8_+_76899772 0.13 ENSMUST00000109913.2
nuclear receptor subfamily 3, group C, member 2
chr8_-_41133697 0.12 ENSMUST00000155055.1
mitochondrial tumor suppressor 1
chr18_-_16809233 0.11 ENSMUST00000025166.7
cadherin 2
chr10_+_53337686 0.11 ENSMUST00000046221.6
chr7_-_119895697 0.11 ENSMUST00000059851.6
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
chr2_-_52676571 0.10 ENSMUST00000178799.1
calcium channel, voltage-dependent, beta 4 subunit
chr4_+_97777606 0.10 ENSMUST00000075448.6
nuclear factor I/A
chr6_-_134792596 0.09 ENSMUST00000100857.3
dual specificity phosphatase 16
chr3_-_89387132 0.09 ENSMUST00000107433.1
zinc finger and BTB domain containing 7B
chr9_-_120023558 0.08 ENSMUST00000111635.2
xin actin-binding repeat containing 1
chr4_-_140665891 0.08 ENSMUST00000069623.5
Rho guanine nucleotide exchange factor (GEF) 10-like
chr19_-_37330613 0.08 ENSMUST00000131070.1
insulin degrading enzyme
chr11_-_20112876 0.08 ENSMUST00000000137.7
ARP2 actin-related protein 2
chr7_-_90457167 0.06 ENSMUST00000032844.5
transmembrane protein 126A
chr17_+_8165501 0.06 ENSMUST00000097419.3
Fgfr1 oncogene partner
chr19_-_58860975 0.06 ENSMUST00000066285.4
heat shock protein 12A
chr10_+_18407658 0.06 ENSMUST00000037341.7
NHS-like 1
chr11_+_5520652 0.05 ENSMUST00000063084.9
X-box binding protein 1
chr11_-_96075655 0.05 ENSMUST00000090541.5
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
chr7_-_133123312 0.05 ENSMUST00000171022.1
C-terminal binding protein 2
fibroblast growth factor receptor 2
chr8_-_89044162 0.05 ENSMUST00000034090.6
sal-like 1 (Drosophila)
chr6_+_72414301 0.05 ENSMUST00000065906.7
gamma-glutamyl carboxylase
chr3_+_41555723 0.05 ENSMUST00000026865.8
PHD finger protein 17
chr11_+_72607221 0.05 ENSMUST00000021148.6
ubiquitin-conjugating enzyme E2G 1
chr19_-_47464406 0.05 ENSMUST00000111800.2
SH3 and PX domains 2A
chr16_+_35022394 0.05 ENSMUST00000061156.8
protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
chr6_+_8948608 0.05 ENSMUST00000160300.1
neurexophilin 1
chr11_-_96824008 0.05 ENSMUST00000142065.1
nuclear factor, erythroid derived 2,-like 1
chr19_-_34747289 0.05 ENSMUST00000009522.3
solute carrier family 16 (monocarboxylic acid transporters), member 12
chr10_-_31609184 0.05 ENSMUST00000081989.6
ring finger protein 217
chr4_-_151861762 0.05 ENSMUST00000097774.2
calmodulin binding transcription activator 1
chr2_-_52424826 0.04 ENSMUST00000036541.7
ADP-ribosylation factor-like 5A
chr15_+_34082664 0.04 ENSMUST00000022865.9
chr7_-_144939823 0.04 ENSMUST00000093962.4
cyclin D1
chr12_-_56535047 0.04 ENSMUST00000178477.2
NK2 homeobox 1
chr18_+_32163073 0.04 ENSMUST00000096575.3
mitogen-activated protein kinase kinase kinase 2
chr16_-_10993100 0.04 ENSMUST00000023143.7
LPS-induced TN factor
chr1_+_177444653 0.04 ENSMUST00000094276.3
zinc finger and BTB domain containing 18
chr6_-_113195380 0.04 ENSMUST00000162280.1
lipoma HMGIC fusion partner-like protein 4
chr4_-_149099802 0.04 ENSMUST00000103217.4
peroxisomal biogenesis factor 14
chr18_+_11052487 0.04 ENSMUST00000047762.7
GATA binding protein 6
chr1_+_120602405 0.04 ENSMUST00000079721.7
engrailed 1
chr3_-_116007399 0.04 ENSMUST00000067485.3
solute carrier family 30 (zinc transporter), member 7
chrX_-_141725181 0.03 ENSMUST00000067841.7
insulin receptor substrate 4
chr5_-_30960236 0.03 ENSMUST00000088063.2
prolactin regulatory element binding
chr3_+_103279293 0.03 ENSMUST00000029444.6
tripartite motif-containing 33
chr4_-_56990332 0.03 ENSMUST00000053681.5
ferric-chelate reductase 1 like
chr15_+_4375462 0.03 ENSMUST00000061925.4
phosphatidylinositol-specific phospholipase C, X domain containing 3
chr17_+_30005029 0.03 ENSMUST00000057897.7
zinc finger, AN1-type domain 3
chr7_-_99858872 0.03 ENSMUST00000036274.6
signal peptidase complex subunit 2 homolog (S. cerevisiae)
chr9_+_32116040 0.03 ENSMUST00000174641.1
Rho GTPase activating protein 32
chr2_-_160367057 0.03 ENSMUST00000099126.3
v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
chrX_-_109013389 0.03 ENSMUST00000033597.8
high-mobility group nucleosome binding domain 5
chr17_-_70990751 0.03 ENSMUST00000038446.8
myosin, light chain 12B, regulatory
chr4_-_82859571 0.03 ENSMUST00000156055.1
zinc finger, DHHC domain containing 21
chr10_+_127739516 0.03 ENSMUST00000054287.7
zinc finger and BTB domain containing 39
chr2_+_59612034 0.03 ENSMUST00000112568.1
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
chr7_+_134670667 0.03 ENSMUST00000084488.4
dedicator of cytokinesis 1
chr2_-_35200923 0.02 ENSMUST00000028238.8
RAB14, member RAS oncogene family
chr14_-_78536762 0.02 ENSMUST00000123853.1
A kinase (PRKA) anchor protein 11
chr6_+_66896397 0.02 ENSMUST00000043148.6
guanine nucleotide binding protein (G protein), gamma 12
chr4_-_133633419 0.02 ENSMUST00000084238.4
zinc finger, DHHC domain containing 18
chr2_-_162661075 0.02 ENSMUST00000109442.1
protein tyrosine phosphatase, receptor type, T
chr5_+_65537209 0.02 ENSMUST00000142407.1
ubiquitin-conjugating enzyme E2K
chr16_-_67620880 0.02 ENSMUST00000114292.1
cell adhesion molecule 2
chr5_+_118169712 0.02 ENSMUST00000054836.6
harakiri, BCL2 interacting protein (contains only BH3 domain)
chr14_+_45351473 0.02 ENSMUST00000111835.2
serine/threonine/tyrosine interaction protein
chr7_+_122067164 0.02 ENSMUST00000033158.4
ubiquitin family domain containing 1
chr19_-_43388292 0.02 ENSMUST00000099428.3
heparanase 2
chr10_+_57486354 0.01 ENSMUST00000079833.4
heat shock factor 2
chr3_+_89773562 0.01 ENSMUST00000038356.8
ubiquitin-conjugating enzyme E2Q (putative) 1
chr13_-_105054895 0.01 ENSMUST00000063551.5
regulator of G-protein signalling 7 binding protein
chr8_-_115707778 0.01 ENSMUST00000109104.1
avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
chr16_+_4726357 0.01 ENSMUST00000154117.1
heme oxygenase (decycling) 2
chr3_-_158562199 0.01 ENSMUST00000106044.1
leucine rich repeat containing 7
chr3_+_152395991 0.01 ENSMUST00000106100.2
zinc finger, ZZ domain containing 3
chrX_-_72918411 0.01 ENSMUST00000114551.3
centrin 2
chr2_+_151542483 0.01 ENSMUST00000044011.5
FK506 binding protein 1a
chr18_-_23041641 0.01 ENSMUST00000097651.3
nucleolar protein 4
chr10_-_112928974 0.01 ENSMUST00000099276.2
ataxin 7-like 3B
chr5_-_121009510 0.00 ENSMUST00000079204.5
rabphilin 3A
chr7_+_19094594 0.00 ENSMUST00000049454.5
sine oculis-related homeobox 5
chr2_+_30061754 0.00 ENSMUST00000149578.1
SET nuclear oncogene
chr2_+_156196642 0.00 ENSMUST00000037401.8
PHD finger protein 20
chr6_-_51469869 0.00 ENSMUST00000114459.1
heterogeneous nuclear ribonucleoprotein A2/B1
chr12_+_111166349 0.00 ENSMUST00000117269.1
TNF receptor-associated factor 3
chr16_+_17797282 0.00 ENSMUST00000012161.3
scavenger receptor class F, member 2
chr12_-_101819048 0.00 ENSMUST00000021603.8
fibulin 5
chr13_+_34162953 0.00 ENSMUST00000124996.1
proteasome (prosome, macropain) assembly chaperone 4
chr2_-_33468493 0.00 ENSMUST00000113156.1
zinc finger and BTB domain containing 43

Network of associatons between targets according to the STRING database.

First level regulatory network of CCAGCAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0031959 mineralocorticoid receptor signaling pathway(GO:0031959)
0.0 0.1 GO:0016344 meiotic chromosome movement towards spindle pole(GO:0016344)
0.0 0.1 GO:0043376 regulation of CD8-positive, alpha-beta T cell differentiation(GO:0043376)
0.0 0.1 GO:1902897 regulation of postsynaptic density protein 95 clustering(GO:1902897)
0.0 0.1 GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) cellular response to fructose stimulus(GO:0071332)
0.0 0.1 GO:0035602 fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow(GO:0035602) fibroblast growth factor receptor signaling pathway involved in hemopoiesis(GO:0035603) fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow(GO:0035604) coronal suture morphogenesis(GO:0060365)
0.0 0.1 GO:0018214 peptidyl-glutamic acid carboxylation(GO:0017187) protein carboxylation(GO:0018214)
0.0 0.0 GO:0015881 creatine transport(GO:0015881)
0.0 0.0 GO:0021759 globus pallidus development(GO:0021759)
0.0 0.0 GO:0016561 protein import into peroxisome matrix, translocation(GO:0016561)
0.0 0.0 GO:0007493 endodermal cell fate determination(GO:0007493)
0.0 0.1 GO:2000384 regulation of ectoderm development(GO:2000383) negative regulation of ectoderm development(GO:2000384)
0.0 0.0 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.0 0.1 GO:0086023 adrenergic receptor signaling pathway involved in heart process(GO:0086023)
0.0 0.1 GO:0010992 ubiquitin homeostasis(GO:0010992)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0005916 fascia adherens(GO:0005916)
0.0 0.0 GO:0098559 cytoplasmic side of early endosome membrane(GO:0098559)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0017082 mineralocorticoid receptor activity(GO:0017082)
0.0 0.1 GO:0042030 ATPase inhibitor activity(GO:0042030)
0.0 0.0 GO:0005308 creatine transmembrane transporter activity(GO:0005308)
0.0 0.1 GO:0030292 protein tyrosine kinase inhibitor activity(GO:0030292)
0.0 0.1 GO:0043559 insulin binding(GO:0043559)