ISMARA results: Arid5a

Project

GSE58827: Dynamics of the Mouse Liver

Navigation

Downloads

Results for Arid5a

Z-value: 0.35

Motif logo

Transcription factors associated with Arid5a

Gene Symbol	Gene ID	Gene Info
Arid5a Ensembl NCBI MGI UniProt	ENSMUSG00000037447.10	AT rich interactive domain 5A (MRF1-like)

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Arid5a	mm10_v2_chr1_+_36307727_36307735	-0.76	8.7e-08	Click!

Activity profile of Arid5a motif

Sorted Z-values of Arid5a motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_58754910 Show fit	2.34	ENSMUST00000059102.6	Upp2 Ensembl NCBI MGI UniProt Show fit	uridine phosphorylase 2
chr2_+_58755177 Show fit	2.33	ENSMUST00000102755.3	Upp2 Ensembl NCBI MGI UniProt Show fit	uridine phosphorylase 2
chr10_-_115362191 Show fit	1.76	ENSMUST00000092170.5	Tmem19 Ensembl NCBI MGI UniProt Show fit	transmembrane protein 19
chr7_-_105600103 Show fit	1.15	ENSMUST00000033185.8	Hpx Ensembl NCBI MGI UniProt Show fit	hemopexin
chr6_-_119467210 Show fit	1.13	ENSMUST00000118120.1	Wnt5b Ensembl NCBI MGI UniProt Show fit	wingless-related MMTV integration site 5B
chr5_-_31295862 Show fit	0.93	ENSMUST00000041266.7 ENSMUST00000172435.1	Fndc4 Ensembl NCBI MGI UniProt Show fit	fibronectin type III domain containing 4
chrM_+_8600 Show fit	0.37	ENSMUST00000082409.1	mt-Co3 Ensembl NCBI MGI UniProt Show fit	mitochondrially encoded cytochrome c oxidase III
chr10_+_52391606 Show fit	0.35	ENSMUST00000067085.4	Nepn Ensembl NCBI MGI UniProt Show fit	nephrocan
chr1_-_172057573 Show fit	0.33	ENSMUST00000059794.3	Nhlh1 Ensembl NCBI MGI UniProt Show fit	nescient helix loop helix 1
chr2_+_62046623 Show fit	0.32	ENSMUST00000112480.2	Slc4a10 Ensembl NCBI MGI UniProt Show fit	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10

Showing 1 to 10 of 22 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Arid5a

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	4.6	GO:0009166	nucleotide catabolic process(GO:0009166)
0.2	1.2	GO:0015886	heme transport(GO:0015886)
0.0	1.1	GO:0045600	positive regulation of fat cell differentiation(GO:0045600)
0.0	0.7	GO:0021860	pyramidal neuron development(GO:0021860)
0.0	0.1	GO:1901621	negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning(GO:1901621)
0.0	0.1	GO:0048563	post-embryonic organ morphogenesis(GO:0048563)

Showing 1 to 6 of 6 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	4.7	GO:0045098	type III intermediate filament(GO:0045098)
0.1	0.7	GO:0097441	basilar dendrite(GO:0097441)
0.0	0.4	GO:0005614	interstitial matrix(GO:0005614)
0.0	0.3	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.9	4.7	GO:0004850	uridine phosphorylase activity(GO:0004850)
0.3	1.2	GO:0015232	heme transporter activity(GO:0015232)
0.0	1.1	GO:0005109	frizzled binding(GO:0005109)
0.0	0.7	GO:0008510	sodium:bicarbonate symporter activity(GO:0008510)
0.0	0.4	GO:0015002	cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.0	0.1	GO:0004691	cAMP-dependent protein kinase activity(GO:0004691)

Showing 1 to 6 of 6 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	4.7	REACTOME PYRIMIDINE CATABOLISM	Genes involved in Pyrimidine catabolism

Showing 1 to 1 of 1 entries

Results for Arid5a

Z-value: 0.35

Motif logo

Transcription factors associated with Arid5a

Activity-expression correlation:

Activity profile of Arid5a motif

Sorted Z-values of Arid5a motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Arid5a

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: