GSE58827: Dynamics of the Mouse Liver


Results for AGCUUAU

Z-value: 0.35

Motif logo

miRNA associated with seed AGCUUAU

NamemiRBASE accession

Activity profile of AGCUUAU motif

Sorted Z-values of AGCUUAU motif

Promoter Log-likelihood Transcript Gene Gene Info
chr2_+_113327711 0.45 ENSMUST00000099576.2
formin 1
chr11_+_21091291 0.37 ENSMUST00000093290.5
pellino 1
chrX_+_161162744 0.35 ENSMUST00000074802.5
sex comb on midleg-like 2 (Drosophila)
chrX_+_42149288 0.34 ENSMUST00000115073.2
stromal antigen 2
chr2_+_113441064 0.34 ENSMUST00000081349.6
formin 1
chr4_-_19708922 0.33 ENSMUST00000108246.2
WW domain containing E3 ubiquitin protein ligase 1
chr13_-_101768154 0.32 ENSMUST00000055518.6
phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
chr2_-_126876209 0.31 ENSMUST00000103224.3
transient receptor potential cation channel, subfamily M, member 7
chr5_+_3803160 0.31 ENSMUST00000171023.1
KRIT1, ankyrin repeat containing
chr14_+_79426454 0.30 ENSMUST00000061222.7
kelch repeat and BTB (POZ) domain containing 7
chr3_+_103279293 0.28 ENSMUST00000029444.6
tripartite motif-containing 33
chr9_-_70657121 0.26 ENSMUST00000049031.5
family with sequence similarity 63, member B
chr2_-_117342709 0.26 ENSMUST00000173541.1
RAS guanyl releasing protein 1
chr13_-_107890059 0.26 ENSMUST00000105097.2
zinc finger SWIM-type containing 6
chr13_+_34875488 0.25 ENSMUST00000077853.3
PRP4 pre-mRNA processing factor 4 homolog B (yeast)
chr6_-_71440623 0.25 ENSMUST00000002292.8
required for meiotic nuclear division 5 homolog A (S. cerevisiae)
chr1_+_130717320 0.25 ENSMUST00000049813.4
YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
chr13_-_64153194 0.25 ENSMUST00000059817.4
zinc finger protein 367
chr6_-_39206782 0.25 ENSMUST00000002305.8
jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
chr19_-_29805989 0.21 ENSMUST00000177155.1
RIKEN cDNA 9930021J03 gene
chr3_-_9833653 0.21 ENSMUST00000161949.1
phosphoprotein associated with glycosphingolipid microdomains 1
chr3_-_127837419 0.20 ENSMUST00000051737.6
adaptor-related protein complex 1 associated regulatory protein
chr1_+_185454803 0.20 ENSMUST00000061093.6
solute carrier family 30, member 10
chr2_-_12301914 0.20 ENSMUST00000028106.4
integrin alpha 8
chr9_-_85327110 0.19 ENSMUST00000034802.8
family with sequence similarity 46, member A
chr13_-_85288999 0.19 ENSMUST00000109552.2
RAS p21 protein activator 1
chr17_-_88065291 0.19 ENSMUST00000005504.8
F-box protein 11
chr12_+_52516077 0.18 ENSMUST00000110725.1
Rho GTPase activating protein 5
chr11_+_79993062 0.18 ENSMUST00000017692.8
suppressor of zeste 12 homolog (Drosophila)
chr11_-_6475992 0.17 ENSMUST00000179343.1
purine rich element binding protein B
chr8_-_34965631 0.17 ENSMUST00000033929.4
tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
chr1_+_140246216 0.16 ENSMUST00000119786.1
potassium channel, subfamily T, member 2
chr3_+_103914560 0.15 ENSMUST00000106806.1
rosbin, round spermatid basic protein 1
chr18_+_35562158 0.15 ENSMUST00000166793.1
matrin 3
chr9_-_117252450 0.14 ENSMUST00000111773.3
RNA binding motif, single stranded interacting protein
chr2_-_102901346 0.14 ENSMUST00000111192.2
CD44 antigen
chr14_+_17660956 0.14 ENSMUST00000022303.7
thyroid hormone receptor beta
chr10_+_86300372 0.13 ENSMUST00000020234.7
tissue inhibitor of metalloproteinase 3
chr3_+_90341654 0.13 ENSMUST00000049382.4
GATA zinc finger domain containing 2B
chr9_-_43105718 0.13 ENSMUST00000165665.1
Rho guanine nucleotide exchange factor (GEF) 12
chr12_+_83632208 0.13 ENSMUST00000048155.9
RNA binding motif protein 25
chr1_-_106714217 0.13 ENSMUST00000112751.1
B cell leukemia/lymphoma 2
chr5_+_13399309 0.13 ENSMUST00000030714.7
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
chr2_+_109917639 0.13 ENSMUST00000046548.7
leucine-rich repeat-containing G protein-coupled receptor 4
chr14_+_49066495 0.13 ENSMUST00000037473.4
adaptor-related protein complex 5, mu 1 subunit
chr7_+_130865756 0.12 ENSMUST00000120441.1
pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
chr5_+_123343834 0.12 ENSMUST00000120593.1
B cell CLL/lymphoma 7A
chr6_-_129507107 0.12 ENSMUST00000183258.1
oxidized low density lipoprotein (lectin-like) receptor 1
chr13_+_5861489 0.11 ENSMUST00000000080.6
Kruppel-like factor 6
chr13_+_81711407 0.11 ENSMUST00000057598.5
metallo-beta-lactamase domain containing 2
chr11_-_30025915 0.11 ENSMUST00000058902.5
echinoderm microtubule associated protein like 6
chr11_+_60417238 0.10 ENSMUST00000070681.6
GID complex subunit 4, VID24 homolog (S. cerevisiae)
chr2_+_48814109 0.10 ENSMUST00000063886.3
activin receptor IIA
chr10_-_120979327 0.10 ENSMUST00000119944.1
LEM domain containing 3
chr15_-_12592556 0.10 ENSMUST00000075317.5
PDZ domain containing 2
chr9_-_123632545 0.10 ENSMUST00000026273.8
solute carrier family 6 (neurotransmitter transporter), member 20B
chr8_+_107293463 0.10 ENSMUST00000169453.1
nuclear factor of activated T cells 5
chr3_+_60501252 0.09 ENSMUST00000099087.2
muscleblind-like 1 (Drosophila)
chr5_+_16553488 0.09 ENSMUST00000030683.3
hepatocyte growth factor
chr6_+_147091379 0.09 ENSMUST00000036003.7
kelch-like 42
chr2_-_137116624 0.09 ENSMUST00000028735.7
jagged 1
chr9_+_52047150 0.09 ENSMUST00000163153.1
chr2_+_79635352 0.08 ENSMUST00000111785.2
sperm specific antigen 2
chr1_+_65186727 0.08 ENSMUST00000097707.4
phosphoinositide kinase, FYVE finger containing
chr17_+_24488773 0.08 ENSMUST00000024958.7
CASK interacting protein 1
chr11_-_49712674 0.08 ENSMUST00000020624.6
CCR4-NOT transcription complex, subunit 6
chr18_+_36281069 0.08 ENSMUST00000051301.3
purine rich element binding protein A
chrX_+_159255782 0.08 ENSMUST00000126686.1
ribosomal protein S6 kinase polypeptide 3
chr17_+_26715644 0.08 ENSMUST00000062519.7
CREB3 regulatory factor
chr14_+_31019125 0.08 ENSMUST00000112095.1
polybromo 1
chr13_+_83504032 0.08 ENSMUST00000163888.1
myocyte enhancer factor 2C
chr5_-_63968867 0.07 ENSMUST00000154169.1
RELT-like 1
chr17_+_25188380 0.07 ENSMUST00000039734.5
unkempt-like (Drosophila)
chr3_+_136670076 0.06 ENSMUST00000070198.7
protein phosphatase 3, catalytic subunit, alpha isoform
chr9_-_70503718 0.06 ENSMUST00000034739.5
ring finger 111
chrX_+_160390684 0.06 ENSMUST00000112408.2
G protein-coupled receptor 64
chr10_+_42761483 0.06 ENSMUST00000019937.4
SEC63-like (S. cerevisiae)
chr3_-_89913144 0.06 ENSMUST00000029559.6
interleukin 6 receptor, alpha
chr1_+_59764264 0.06 ENSMUST00000087435.5
bone morphogenetic protein receptor, type II (serine/threonine kinase)
chr17_+_29032664 0.06 ENSMUST00000130216.1
serine/arginine-rich splicing factor 3
chr4_-_14826582 0.06 ENSMUST00000117268.1
OTU domain containing 6B
chr3_+_98013503 0.06 ENSMUST00000079812.6
notch 2
chr5_-_4104654 0.06 ENSMUST00000001507.4
cytochrome P450, family 51
chr17_-_64331817 0.06 ENSMUST00000172733.1
praja 2, RING-H2 motif containing
chr12_+_53248677 0.06 ENSMUST00000101432.2
neuronal PAS domain protein 3
chr10_+_7681197 0.06 ENSMUST00000165952.1
large tumor suppressor
chr8_-_85555261 0.06 ENSMUST00000034138.5
DnaJ (Hsp40) homolog, subfamily A, member 2
chr4_-_70534904 0.05 ENSMUST00000107359.2
multiple EGF-like-domains 9
chr1_-_17097839 0.05 ENSMUST00000038382.4
junctophilin 1
chr1_-_156939626 0.05 ENSMUST00000063199.6
Ral GEF with PH domain and SH3 binding motif 2
chr5_+_102481374 0.05 ENSMUST00000094559.2
Rho GTPase activating protein 24
chr11_-_100650693 0.05 ENSMUST00000103119.3
zinc finger protein 385C
chr9_-_96631487 0.05 ENSMUST00000128346.1
RAS p21 protein activator 2
chr18_+_75367529 0.05 ENSMUST00000026999.3
SMAD family member 7
chr7_+_120677579 0.05 ENSMUST00000060175.6
cDNA sequence BC030336
chr5_+_147430407 0.05 ENSMUST00000176600.1
PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
chr1_-_178337774 0.05 ENSMUST00000037748.7
heterogeneous nuclear ribonucleoprotein U
chr3_+_137867675 0.04 ENSMUST00000090178.5
DnaJ (Hsp40) homolog, subfamily B, member 14
chr2_-_58357752 0.04 ENSMUST00000112608.2
activin A receptor, type IC
chr6_+_134830145 0.04 ENSMUST00000046303.5
cAMP responsive element binding protein-like 2
chr11_-_98625661 0.04 ENSMUST00000104933.1
predicted gene 12355
chr15_+_80711292 0.04 ENSMUST00000067689.7
trinucleotide repeat containing 6b
chr3_-_56183678 0.04 ENSMUST00000029374.6
chr4_+_89137122 0.04 ENSMUST00000058030.7
methylthioadenosine phosphorylase
chr2_-_131352857 0.04 ENSMUST00000059372.4
ring finger protein 24
chr5_-_50058908 0.03 ENSMUST00000030971.5
G protein-coupled receptor 125
chrX_+_135839034 0.03 ENSMUST00000173804.1
G protein-coupled receptor associated sorting protein 2
chr3_+_129199919 0.03 ENSMUST00000029657.9
paired-like homeodomain transcription factor 2
chr2_+_69897220 0.03 ENSMUST00000055758.9
ubiquitin protein ligase E3 component n-recognin 3
chr9_-_8004585 0.03 ENSMUST00000086580.5
yes-associated protein 1
chr6_+_71493850 0.03 ENSMUST00000064637.4
ring finger protein 103
chr8_-_111876661 0.03 ENSMUST00000034431.1
transmembrane protein 170
chr14_-_56778301 0.02 ENSMUST00000022507.5
paraspeckle protein 1
chr14_-_21052420 0.02 ENSMUST00000154460.1
adaptor-related protein complex 3, mu 1 subunit
chr14_-_105896819 0.02 ENSMUST00000022709.4
sprouty homolog 2 (Drosophila)
chr1_-_58586191 0.02 ENSMUST00000038372.7
family with sequence similarity 126, member B
chr6_-_83831736 0.02 ENSMUST00000058383.8
poly(A) binding protein interacting protein 2B
chr13_-_115101909 0.01 ENSMUST00000061673.7
integrin alpha 1
chr10_+_67979569 0.01 ENSMUST00000118160.1
rhotekin 2
chr17_-_6961156 0.01 ENSMUST00000063683.6
T cell activation GTPase activating protein 1
chr4_-_123750236 0.01 ENSMUST00000102636.3
akirin 1
chr5_+_123142187 0.01 ENSMUST00000174836.1
SET domain containing 1B
chr16_-_46496955 0.01 ENSMUST00000023335.6
poliovirus receptor-related 3
chr8_+_106935720 0.01 ENSMUST00000047425.3
syntrophin, basic 2
chr2_-_152415044 0.01 ENSMUST00000099207.3
zinc finger, CCHC domain containing 3
chr10_-_19015347 0.01 ENSMUST00000019997.4
tumor necrosis factor, alpha-induced protein 3
chr2_+_153741274 0.01 ENSMUST00000028981.8
microtubule-associated protein, RP/EB family, member 1
chr17_-_51832666 0.01 ENSMUST00000144331.1
special AT-rich sequence binding protein 1
chr1_+_74506044 0.01 ENSMUST00000087215.5
rcd1 (required for cell differentiation) homolog 1 (S. pombe)
chr15_-_43170809 0.00 ENSMUST00000063492.6
R-spondin 2 homolog (Xenopus laevis)
chr6_+_66896397 0.00 ENSMUST00000043148.6
guanine nucleotide binding protein (G protein), gamma 12
chr16_+_11322876 0.00 ENSMUST00000180792.1
sorting nexin 29
chr6_-_143947092 0.00 ENSMUST00000144289.1
SRY-box containing gene 5
chr3_-_131344892 0.00 ENSMUST00000090246.4
sphingomyelin synthase 2
chr10_+_53596936 0.00 ENSMUST00000020004.6
ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
chr15_+_34306666 0.00 ENSMUST00000163455.2
matrilin 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AGCUUAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 GO:0072092 ureteric bud invasion(GO:0072092)
0.1 0.3 GO:1990168 protein K33-linked deubiquitination(GO:1990168)
0.1 0.3 GO:0016340 calcium-dependent cell-matrix adhesion(GO:0016340)
0.1 0.3 GO:0036353 histone H2A-K119 monoubiquitination(GO:0036353)
0.1 0.2 GO:0071579 regulation of zinc ion transport(GO:0071579)
0.1 0.2 GO:1904742 regulation of telomeric DNA binding(GO:1904742)
0.0 0.2 GO:2000721 positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation(GO:2000721)
0.0 0.1 GO:0032847 regulation of cellular pH reduction(GO:0032847)
0.0 0.1 GO:0072204 cell-cell signaling involved in kidney development(GO:0060995) Wnt signaling pathway involved in kidney development(GO:0061289) canonical Wnt signaling pathway involved in metanephric kidney development(GO:0061290) cell-cell signaling involved in metanephros development(GO:0072204)
0.0 0.2 GO:0001920 negative regulation of receptor recycling(GO:0001920)
0.0 0.1 GO:1900623 regulation of monocyte aggregation(GO:1900623) positive regulation of monocyte aggregation(GO:1900625)
0.0 0.3 GO:0032876 negative regulation of DNA endoreduplication(GO:0032876)
0.0 0.1 GO:0007621 negative regulation of female receptivity(GO:0007621)
0.0 0.4 GO:0008063 Toll signaling pathway(GO:0008063)
0.0 0.1 GO:1903984 positive regulation of TRAIL-activated apoptotic signaling pathway(GO:1903984)
0.0 0.1 GO:0010536 positive regulation of activation of Janus kinase activity(GO:0010536)
0.0 0.1 GO:2000793 cell proliferation involved in heart valve development(GO:2000793)
0.0 0.1 GO:0061073 ciliary body morphogenesis(GO:0061073)
0.0 0.3 GO:0010459 negative regulation of heart rate(GO:0010459)
0.0 0.1 GO:0021828 cerebral cortex tangential migration using cell-axon interactions(GO:0021824) gonadotrophin-releasing hormone neuronal migration to the hypothalamus(GO:0021828) hypothalamic tangential migration using cell-axon interactions(GO:0021856) facioacoustic ganglion development(GO:1903375)
0.0 0.1 GO:0046881 positive regulation of follicle-stimulating hormone secretion(GO:0046881)
0.0 0.1 GO:1903244 positive regulation of cardiac muscle adaptation(GO:0010615) positive regulation of cardiac muscle hypertrophy in response to stress(GO:1903244)
0.0 0.1 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.1 GO:0003349 epicardium-derived cardiac endothelial cell differentiation(GO:0003349)
0.0 0.1 GO:2001013 regulation of synaptic activity(GO:0060025) epithelial cell proliferation involved in renal tubule morphogenesis(GO:2001013)
0.0 0.2 GO:0098532 histone H3-K27 trimethylation(GO:0098532)
0.0 0.3 GO:0032725 positive regulation of granulocyte macrophage colony-stimulating factor production(GO:0032725) positive regulation of interferon-gamma secretion(GO:1902715)
0.0 0.1 GO:0070197 meiotic telomere tethering at nuclear periphery(GO:0044821) meiotic attachment of telomere to nuclear envelope(GO:0070197) chromosome attachment to the nuclear envelope(GO:0097240)
0.0 0.1 GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay(GO:0070966) regulation of ligand-dependent nuclear receptor transcription coactivator activity(GO:2000325) positive regulation of ligand-dependent nuclear receptor transcription coactivator activity(GO:2000327)
0.0 0.3 GO:2000114 regulation of establishment of cell polarity(GO:2000114)
0.0 0.0 GO:2000371 regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000371) positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000373)
0.0 0.0 GO:0007181 transforming growth factor beta receptor complex assembly(GO:0007181)
0.0 0.1 GO:0001827 inner cell mass cell fate commitment(GO:0001827)
0.0 0.1 GO:0038161 prolactin signaling pathway(GO:0038161) negative regulation of glucocorticoid mediated signaling pathway(GO:1900170)
0.0 0.1 GO:1902965 regulation of protein localization to early endosome(GO:1902965) positive regulation of protein localization to early endosome(GO:1902966)
0.0 0.2 GO:0036120 cellular response to platelet-derived growth factor stimulus(GO:0036120)
0.0 0.1 GO:0032485 regulation of Ral protein signal transduction(GO:0032485)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0034657 GID complex(GO:0034657)
0.0 0.1 GO:0034673 inhibin-betaglycan-ActRII complex(GO:0034673)
0.0 0.2 GO:0032591 dendritic spine membrane(GO:0032591)
0.0 0.2 GO:0001739 sex chromatin(GO:0001739)
0.0 0.1 GO:0014701 junctional sarcoplasmic reticulum membrane(GO:0014701)
0.0 0.3 GO:0005662 DNA replication factor A complex(GO:0005662)
0.0 0.0 GO:0031251 PAN complex(GO:0031251)
0.0 0.1 GO:0005896 interleukin-6 receptor complex(GO:0005896)
0.0 0.0 GO:0048179 activin receptor complex(GO:0048179)
0.0 0.2 GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.0 0.3 GO:0043196 varicosity(GO:0043196)
0.0 0.3 GO:0001741 XY body(GO:0001741)
0.0 0.3 GO:0097038 perinuclear endoplasmic reticulum(GO:0097038)
0.0 0.1 GO:0005955 calcineurin complex(GO:0005955)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0035650 AP-1 adaptor complex binding(GO:0035650)
0.1 0.3 GO:0043125 ErbB-3 class receptor binding(GO:0043125)
0.1 0.3 GO:0032422 purine-rich negative regulatory element binding(GO:0032422)
0.0 0.3 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 0.2 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.0 0.3 GO:0019992 diacylglycerol binding(GO:0019992)
0.0 0.1 GO:0004915 interleukin-6 receptor activity(GO:0004915) interleukin-6 binding(GO:0019981)
0.0 0.1 GO:0017002 activin-activated receptor activity(GO:0017002)
0.0 0.0 GO:0030617 transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity(GO:0030617)
0.0 0.2 GO:0005068 transmembrane receptor protein tyrosine kinase adaptor activity(GO:0005068)
0.0 0.2 GO:0016274 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.1 GO:0001069 regulatory region RNA binding(GO:0001069)
0.0 0.1 GO:0005114 type II transforming growth factor beta receptor binding(GO:0005114)
0.0 0.1 GO:0070324 thyroid hormone receptor activity(GO:0004887) thyroid hormone binding(GO:0070324)
0.0 0.1 GO:0051434 BH3 domain binding(GO:0051434)
0.0 0.0 GO:0004731 purine-nucleoside phosphorylase activity(GO:0004731)
0.0 0.3 GO:0070410 co-SMAD binding(GO:0070410)
0.0 0.1 GO:0033192 calmodulin-dependent protein phosphatase activity(GO:0033192)
0.0 0.1 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 PID ECADHERIN KERATINOCYTE PATHWAY E-cadherin signaling in keratinocytes
0.0 0.1 SA FAS SIGNALING The TNF-type receptor Fas induces apoptosis on ligand binding.
0.0 0.5 PID RAS PATHWAY Regulation of Ras family activation

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME IRAK1 RECRUITS IKK COMPLEX Genes involved in IRAK1 recruits IKK complex
0.0 0.4 REACTOME IL 7 SIGNALING Genes involved in Interleukin-7 signaling
0.0 0.2 REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS Genes involved in Phosphorylation of CD3 and TCR zeta chains
0.0 0.1 REACTOME HYALURONAN UPTAKE AND DEGRADATION Genes involved in Hyaluronan uptake and degradation
0.0 0.1 REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor