GSE58827: Dynamics of the Mouse Liver


Results for ACUGCAU

Z-value: 0.44

Motif logo

miRNA associated with seed ACUGCAU

NamemiRBASE accession

Activity profile of ACUGCAU motif

Sorted Z-values of ACUGCAU motif

Promoter Log-likelihood Transcript Gene Gene Info
chr2_+_102658640 1.34 ENSMUST00000080210.3
solute carrier family 1 (glial high affinity glutamate transporter), member 2
chr6_-_23839420 0.97 ENSMUST00000115358.2
Ca2+-dependent activator protein for secretion 2
chr4_+_40722912 0.56 ENSMUST00000164233.1
DnaJ (Hsp40) homolog, subfamily A, member 1
chr5_+_88886809 0.45 ENSMUST00000148750.1
solute carrier family 4 (anion exchanger), member 4
chrX_-_51018011 0.41 ENSMUST00000053593.7
RAP2C, member of RAS oncogene family
chr1_-_190170671 0.40 ENSMUST00000175916.1
prospero-related homeobox 1
chr16_-_57754707 0.40 ENSMUST00000089332.4
collagen, type VIII, alpha 1
chr19_-_21472552 0.38 ENSMUST00000087600.3
guanine deaminase
chr11_+_62281457 0.37 ENSMUST00000101075.4
tetratricopeptide repeat domain 19
chr12_+_40446050 0.36 ENSMUST00000037488.6
dedicator of cytokinesis 4
chrX_-_162643629 0.35 ENSMUST00000112334.1
RALBP1 associated Eps domain containing protein 2
chr3_-_75956888 0.34 ENSMUST00000038563.7
golgi integral membrane protein 4
chr2_+_132846638 0.33 ENSMUST00000028835.6
cardiolipin synthase 1
chr14_-_122983211 0.33 ENSMUST00000037726.7
transmembrane and tetratricopeptide repeat containing 4
chr7_+_132931142 0.32 ENSMUST00000106157.1
zinc finger, RAN-binding domain containing 1
chr6_+_34709442 0.31 ENSMUST00000115021.1
caldesmon 1
chr19_+_18670780 0.31 ENSMUST00000025632.9
RIKEN cDNA 2410127L17 gene
chr5_-_148552783 0.30 ENSMUST00000079324.7
ubiquitin-like 3
chr9_-_107231816 0.30 ENSMUST00000044532.4
dedicator of cyto-kinesis 3
chr18_-_46525940 0.30 ENSMUST00000036226.5
fem-1 homolog c (C.elegans)
chrX_-_103981242 0.29 ENSMUST00000121153.1
ring finger protein, LIM domain interacting
chr15_-_96699698 0.28 ENSMUST00000023099.6
solute carrier family 38, member 2
chr10_+_4611971 0.28 ENSMUST00000105590.1
estrogen receptor 1 (alpha)
chr2_+_6322621 0.28 ENSMUST00000114937.1
USP6 N-terminal like
chr11_-_6475992 0.27 ENSMUST00000179343.1
purine rich element binding protein B
chr6_-_35539765 0.27 ENSMUST00000031866.5
chr19_-_41263931 0.27 ENSMUST00000025989.8
transmembrane 9 superfamily member 3
chr6_-_99666762 0.27 ENSMUST00000032151.2
eukaryotic translation initiation factor 4E member 3
chr1_-_164458345 0.27 ENSMUST00000027863.7
ATPase, Na+/K+ transporting, beta 1 polypeptide
chr17_+_3326552 0.27 ENSMUST00000169838.1
T cell lymphoma invasion and metastasis 2
chr14_+_101729907 0.26 ENSMUST00000100337.3
LIM domain only 7
chr7_-_98309471 0.25 ENSMUST00000033020.7
alkaline ceramidase 3
chr3_-_69127098 0.24 ENSMUST00000029353.2
karyopherin (importin) alpha 4
chr1_+_187997821 0.24 ENSMUST00000027906.6
estrogen-related receptor gamma
chr1_-_16519284 0.23 ENSMUST00000162751.1
staufen (RNA binding protein) homolog 2 (Drosophila)
chr3_-_84582476 0.23 ENSMUST00000107687.2
ADP-ribosylation factor interacting protein 1
chr2_+_122028544 0.22 ENSMUST00000028668.7
eukaryotic translation initiation factor 3, subunit J1
chr5_-_51553896 0.22 ENSMUST00000132734.1
peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
chr16_+_42907563 0.21 ENSMUST00000151244.1
zinc finger and BTB domain containing 20
chr13_+_55693082 0.21 ENSMUST00000057844.8
RIKEN cDNA B230219D22 gene
chr7_+_128523576 0.20 ENSMUST00000033136.7
BCL2-associated athanogene 3
chr9_-_65908676 0.20 ENSMUST00000119245.1
thyroid hormone receptor interactor 4
chr7_-_90457167 0.19 ENSMUST00000032844.5
transmembrane protein 126A
chr2_-_64097994 0.18 ENSMUST00000131615.2
chr4_+_57637816 0.18 ENSMUST00000150412.1
predicted gene 20459
chr3_+_108537523 0.18 ENSMUST00000029485.5
RIKEN cDNA 1700013F07 gene
chr11_-_50841546 0.18 ENSMUST00000109133.1
zinc finger protein 879
chr5_-_100500592 0.17 ENSMUST00000149714.1
lin-54 homolog (C. elegans)
chr1_+_59482133 0.17 ENSMUST00000114246.2
frizzled homolog 7 (Drosophila)
chr5_-_92083455 0.16 ENSMUST00000169094.1
GTPase activating protein (SH3 domain) binding protein 2
chr10_+_102512216 0.16 ENSMUST00000055355.4
Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
chr18_-_43477764 0.16 ENSMUST00000057110.9
eukaryotic translation initiation factor 3, subunit J2
chr16_-_32003122 0.16 ENSMUST00000023457.5
SUMO/sentrin specific peptidase 5
chr13_+_3538075 0.15 ENSMUST00000059515.6
guanosine diphosphate (GDP) dissociation inhibitor 2
chr14_+_34673888 0.15 ENSMUST00000048263.7
wings apart-like homolog (Drosophila)
chr17_-_88065291 0.15 ENSMUST00000005504.8
F-box protein 11
chr19_-_30549516 0.15 ENSMUST00000025803.8
dickkopf homolog 1 (Xenopus laevis)
chr2_+_119675062 0.15 ENSMUST00000028767.8
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
chr2_-_23572038 0.15 ENSMUST00000132484.1
speckle-type POZ protein-like
chr7_+_120677579 0.15 ENSMUST00000060175.6
cDNA sequence BC030336
chr2_+_12924041 0.15 ENSMUST00000134794.1
phosphotriesterase related
chr14_+_67716095 0.15 ENSMUST00000078053.6
potassium channel tetramerisation domain containing 9
chr13_-_107890059 0.13 ENSMUST00000105097.2
zinc finger SWIM-type containing 6
chr11_-_85235065 0.13 ENSMUST00000018625.9
amyloid beta precursor protein (cytoplasmic tail) binding protein 2
chr12_-_91849081 0.13 ENSMUST00000167466.1
sel-1 suppressor of lin-12-like (C. elegans)
chr9_-_72111827 0.13 ENSMUST00000183404.1
transcription factor 12
chr1_-_128417352 0.13 ENSMUST00000027602.8
aspartyl-tRNA synthetase
chrX_+_166238901 0.13 ENSMUST00000112235.1
glycoprotein m6b
chr4_+_57845240 0.13 ENSMUST00000102903.1
A kinase (PRKA) anchor protein 2
chr7_-_89338709 0.13 ENSMUST00000137723.1
transmembrane protein 135
chr1_+_37997975 0.13 ENSMUST00000027252.7
eukaryotic translation initiation factor 5B
chr11_+_80209019 0.12 ENSMUST00000077451.7
ras homolog gene family, member T1
chr14_-_21052420 0.12 ENSMUST00000154460.1
adaptor-related protein complex 3, mu 1 subunit
chr9_+_119341487 0.12 ENSMUST00000175743.1
acetyl-Coenzyme A acyltransferase 1A
chr11_-_82890541 0.12 ENSMUST00000092844.6
RAD51 homolog D
chr9_-_91365756 0.12 ENSMUST00000034927.6
zinc finger protein of the cerebellum 1
chr19_+_3767397 0.12 ENSMUST00000113974.4
suppressor of variegation 4-20 homolog 1 (Drosophila)
chr8_-_81014866 0.12 ENSMUST00000042724.6
ubiquitin specific peptidase 38
chr3_-_139075178 0.11 ENSMUST00000098574.2
RAP1, GTP-GDP dissociation stimulator 1
chr11_-_106920681 0.11 ENSMUST00000103067.3
SMAD specific E3 ubiquitin protein ligase 2
chr6_+_145211134 0.11 ENSMUST00000111725.1
LYR motif containing 5
chr15_-_36794498 0.11 ENSMUST00000110361.1
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
chr3_-_41082992 0.10 ENSMUST00000058578.7
progesterone receptor membrane component 2
chr4_-_3574844 0.10 ENSMUST00000029891.5
transmembrane protein 68
chr11_+_57801575 0.10 ENSMUST00000020826.5
chrX_-_103186618 0.10 ENSMUST00000121720.1
nucleosome assembly protein 1-like 2
chr10_-_123196916 0.10 ENSMUST00000020334.7
ubiquitin specific peptidase 15
chr12_+_49382791 0.10 ENSMUST00000179669.1
forkhead box G1
chr11_+_52396414 0.10 ENSMUST00000109057.1
RIKEN cDNA 9530068E07 gene
chr2_-_104494400 0.09 ENSMUST00000028600.7
homeodomain interacting protein kinase 3
chr3_-_108911687 0.09 ENSMUST00000029480.8
PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
chr9_-_66795469 0.09 ENSMUST00000034934.8
anterior pharynx defective 1b homolog (C. elegans)
chr5_+_86804214 0.09 ENSMUST00000119339.1
YTH domain containing 1
chr18_-_10610124 0.09 ENSMUST00000097670.3
establishment of cohesion 1 homolog 1 (S. cerevisiae)
chr1_+_61638819 0.09 ENSMUST00000138768.1
par-3 partitioning defective 3 homolog B (C. elegans)
chr4_+_55350043 0.08 ENSMUST00000030134.8
RAD23b homolog (S. cerevisiae)
chr18_-_34954302 0.08 ENSMUST00000025217.8
heat shock protein 9
chr15_-_93336800 0.08 ENSMUST00000080299.6
YY1 associated factor 2
chr6_+_103510874 0.08 ENSMUST00000066905.6
cell adhesion molecule with homology to L1CAM
chr5_+_32458974 0.08 ENSMUST00000015100.8
protein phosphatase 1, catalytic subunit, beta isoform
chrX_+_56609843 0.08 ENSMUST00000077741.5
solute carrier family 9 (sodium/hydrogen exchanger), member 6
chr3_-_26133734 0.08 ENSMUST00000108308.3
neuroligin 1
chr1_+_172376528 0.08 ENSMUST00000052455.2
phosphatidylinositol glycan anchor biosynthesis, class M
chr6_-_92214897 0.07 ENSMUST00000014694.8
zinc finger, FYVE domain containing 20
chr19_-_47464406 0.07 ENSMUST00000111800.2
SH3 and PX domains 2A
chr12_+_21111720 0.07 ENSMUST00000064595.8
ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
chr17_-_10319324 0.07 ENSMUST00000097414.3
chr4_+_66827545 0.07 ENSMUST00000048096.5
toll-like receptor 4
chr16_-_84735742 0.06 ENSMUST00000116584.1
mitochondrial ribosomal protein L39
chr16_+_37539883 0.06 ENSMUST00000023524.6
RAB, member of RAS oncogene family-like 3
chr12_-_78861636 0.06 ENSMUST00000021536.7
ATPase, H+ transporting, lysosomal V1 subunit D
chr6_-_24956106 0.06 ENSMUST00000127247.2
transmembrane protein 229A
chrX_-_136743675 0.06 ENSMUST00000166478.1
mortality factor 4 like 2
chr3_+_63976106 0.06 ENSMUST00000029405.7
guanine monophosphate synthetase
chr14_-_46822232 0.06 ENSMUST00000111817.1
glia maturation factor, beta
chr2_-_120609283 0.05 ENSMUST00000102496.1
leucine rich repeat containing 57
chr1_-_160792908 0.05 ENSMUST00000028049.7
RAB GTPase activating protein 1-like
chr1_-_78197112 0.05 ENSMUST00000087086.6
paired box gene 3
chr9_-_71592265 0.05 ENSMUST00000166843.1
GRINL1A complex locus
myocardial zonula adherens protein
chr11_-_28584260 0.04 ENSMUST00000093253.3
coiled-coil domain containing 85A
chr2_+_121955964 0.04 ENSMUST00000036647.6
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr17_-_45433682 0.04 ENSMUST00000024727.8
cell division cycle 5-like (S. pombe)
chr3_-_36475688 0.04 ENSMUST00000029266.8
annexin A5
chr10_+_110920170 0.04 ENSMUST00000020403.5
cysteine and glycine-rich protein 2
chr10_-_64090265 0.04 ENSMUST00000105439.1
leucine rich repeat transmembrane neuronal 3
chr19_+_21272276 0.03 ENSMUST00000025659.4
zinc finger, AN1-type domain 5
chr11_-_86357570 0.03 ENSMUST00000043624.8
mediator complex subunit 13
chr13_+_55593135 0.02 ENSMUST00000109905.3
transmembrane emp24 protein transport domain containing 9
chr7_+_90130227 0.02 ENSMUST00000049537.7
phosphatidylinositol binding clathrin assembly protein
chr15_+_96287518 0.01 ENSMUST00000134985.2
AT rich interactive domain 2 (ARID, RFX-like)
chr8_+_54954728 0.00 ENSMUST00000033915.7
glycoprotein m6a
chr15_+_11000716 0.00 ENSMUST00000117100.1
solute carrier family 45, member 2
chr9_-_71485893 0.00 ENSMUST00000034720.5
polymerase (RNA) II (DNA directed) polypeptide M
chr8_-_57962564 0.00 ENSMUST00000098757.3
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

Network of associatons between targets according to the STRING database.

First level regulatory network of ACUGCAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.3 GO:0070779 D-aspartate transport(GO:0070777) D-aspartate import(GO:0070779)
0.1 0.4 GO:0061114 hepatocyte cell migration(GO:0002194) branching involved in pancreas morphogenesis(GO:0061114) acinar cell differentiation(GO:0090425) positive regulation of forebrain neuron differentiation(GO:2000979)
0.1 0.4 GO:0046098 guanine metabolic process(GO:0046098)
0.1 1.0 GO:1990504 dense core granule exocytosis(GO:1990504)
0.1 0.3 GO:1990168 protein K33-linked deubiquitination(GO:1990168)
0.1 0.3 GO:0035526 retrograde transport, plasma membrane to Golgi(GO:0035526)
0.1 0.3 GO:2000812 regulation of barbed-end actin filament capping(GO:2000812)
0.1 0.4 GO:1904694 negative regulation of vascular smooth muscle contraction(GO:1904694)
0.1 0.3 GO:1903279 regulation of calcium:sodium antiporter activity(GO:1903279)
0.1 0.6 GO:0042769 DNA damage response, detection of DNA damage(GO:0042769)
0.1 0.3 GO:1900095 regulation of dosage compensation by inactivation of X chromosome(GO:1900095)
0.1 0.2 GO:2000182 regulation of progesterone biosynthetic process(GO:2000182)
0.1 0.2 GO:1901295 regulation of heart induction by regulation of canonical Wnt signaling pathway(GO:0090081) regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:1901295) regulation of midbrain dopaminergic neuron differentiation(GO:1904956) regulation of canonical Wnt signaling pathway involved in heart development(GO:1905066)
0.0 0.3 GO:0060011 Sertoli cell proliferation(GO:0060011) prostate epithelial cord elongation(GO:0060523)
0.0 0.2 GO:2000384 regulation of ectoderm development(GO:2000383) negative regulation of ectoderm development(GO:2000384)
0.0 0.3 GO:0032049 cardiolipin biosynthetic process(GO:0032049)
0.0 0.2 GO:0098964 dendritic transport of ribonucleoprotein complex(GO:0098961) dendritic transport of messenger ribonucleoprotein complex(GO:0098963) anterograde dendritic transport of messenger ribonucleoprotein complex(GO:0098964)
0.0 0.4 GO:0090557 establishment of endothelial intestinal barrier(GO:0090557)
0.0 0.4 GO:0034551 respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551) mitochondrial respiratory chain complex III biogenesis(GO:0097033)
0.0 0.1 GO:0045360 regulation of interleukin-1 biosynthetic process(GO:0045360) positive regulation of interleukin-1 biosynthetic process(GO:0045362)
0.0 0.1 GO:0021852 pyramidal neuron migration(GO:0021852)
0.0 0.1 GO:0000715 nucleotide-excision repair, DNA damage recognition(GO:0000715)
0.0 0.1 GO:0098923 retrograde trans-synaptic signaling by soluble gas(GO:0098923)
0.0 0.3 GO:0032328 alanine transport(GO:0032328)
0.0 0.1 GO:1901165 positive regulation of trophoblast cell migration(GO:1901165)
0.0 0.1 GO:0051581 negative regulation of neurotransmitter uptake(GO:0051581) negative regulation of serotonin uptake(GO:0051612)
0.0 0.1 GO:0090168 Golgi reassembly(GO:0090168)
0.0 0.1 GO:1902037 negative regulation of hematopoietic stem cell differentiation(GO:1902037)
0.0 0.1 GO:0000707 meiotic DNA recombinase assembly(GO:0000707)
0.0 0.1 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0 0.1 GO:0034421 post-translational protein acetylation(GO:0034421)
0.0 0.2 GO:0046512 sphingosine biosynthetic process(GO:0046512)
0.0 0.4 GO:0015701 bicarbonate transport(GO:0015701)
0.0 0.1 GO:0071442 positive regulation of histone H3-K14 acetylation(GO:0071442)
0.0 0.2 GO:0021554 optic nerve development(GO:0021554)
0.0 0.3 GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315)
0.0 0.1 GO:0072675 osteoclast fusion(GO:0072675)
0.0 0.1 GO:0006177 GMP biosynthetic process(GO:0006177)
0.0 0.1 GO:1902513 regulation of organelle transport along microtubule(GO:1902513)
0.0 0.2 GO:0097201 negative regulation of transcription from RNA polymerase II promoter in response to stress(GO:0097201)
0.0 0.2 GO:0016926 protein desumoylation(GO:0016926)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.0 0.3 GO:0030478 actin cap(GO:0030478)
0.0 1.3 GO:0030673 axolemma(GO:0030673)
0.0 0.3 GO:0005890 sodium:potassium-exchanging ATPase complex(GO:0005890)
0.0 0.3 GO:0008290 F-actin capping protein complex(GO:0008290)
0.0 0.1 GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0 0.1 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0 0.4 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.1 GO:0071942 XPC complex(GO:0071942)
0.0 0.3 GO:0005662 DNA replication factor A complex(GO:0005662)
0.0 0.7 GO:0055038 recycling endosome membrane(GO:0055038)
0.0 0.2 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 1.0 GO:0042734 presynaptic membrane(GO:0042734)
0.0 0.1 GO:0070765 gamma-secretase complex(GO:0070765)
0.0 0.1 GO:0072357 PTW/PP1 phosphatase complex(GO:0072357)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.3 GO:0015501 glutamate:sodium symporter activity(GO:0015501)
0.1 0.3 GO:0038052 type 1 metabotropic glutamate receptor binding(GO:0031798) RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.1 0.6 GO:0055131 C3HC4-type RING finger domain binding(GO:0055131)
0.1 0.3 GO:0032422 purine-rich negative regulatory element binding(GO:0032422)
0.1 0.2 GO:0070139 ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.0 0.2 GO:0017040 ceramidase activity(GO:0017040)
0.0 0.2 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.0 0.2 GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.0 0.4 GO:0050693 LBD domain binding(GO:0050693)
0.0 0.3 GO:0005391 sodium:potassium-exchanging ATPase activity(GO:0005391)
0.0 0.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.4 GO:0008510 sodium:bicarbonate symporter activity(GO:0008510)
0.0 0.1 GO:0016453 acetyl-CoA C-acetyltransferase activity(GO:0003985) CoA-transferase activity(GO:0008410) palmitoyl-CoA oxidase activity(GO:0016401) C-acetyltransferase activity(GO:0016453)
0.0 0.1 GO:0000150 recombinase activity(GO:0000150)
0.0 0.2 GO:0048019 receptor antagonist activity(GO:0048019)
0.0 0.1 GO:0061649 ubiquitinated histone binding(GO:0061649)
0.0 0.2 GO:0003708 retinoic acid receptor activity(GO:0003708)
0.0 0.3 GO:0016780 phosphotransferase activity, for other substituted phosphate groups(GO:0016780)
0.0 0.1 GO:0001875 lipopolysaccharide receptor activity(GO:0001875)
0.0 0.2 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.3 GO:0070530 K63-linked polyubiquitin binding(GO:0070530)
0.0 0.8 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.0 GO:0071987 WD40-repeat domain binding(GO:0071987)
0.0 0.2 GO:0042975 peroxisome proliferator activated receptor binding(GO:0042975)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID WNT SIGNALING PATHWAY Wnt signaling network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME PURINE CATABOLISM Genes involved in Purine catabolism
0.0 1.6 REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS Genes involved in Amino acid and oligopeptide SLC transporters
0.0 0.3 REACTOME ACYL CHAIN REMODELLING OF PG Genes involved in Acyl chain remodelling of PG
0.0 0.3 REACTOME BASIGIN INTERACTIONS Genes involved in Basigin interactions