GSE58827: Dynamics of the Mouse Liver


Results for ACCCUGU

Z-value: 0.29

Motif logo

miRNA associated with seed ACCCUGU

NamemiRBASE accession

Activity profile of ACCCUGU motif

Sorted Z-values of ACCCUGU motif

Promoter Log-likelihood Transcript Gene Gene Info
chr18_-_77565050 0.56 ENSMUST00000182153.1
ring finger protein 165
chr10_-_83337845 0.53 ENSMUST00000039956.5
solute carrier family 41, member 2
chr16_-_23988852 0.48 ENSMUST00000023151.5
B cell leukemia/lymphoma 6
chr16_-_17928136 0.43 ENSMUST00000003622.8
solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
chr7_+_49910112 0.36 ENSMUST00000056442.5
solute carrier family 6 (neurotransmitter transporter, glycine), member 5
chr6_-_113195380 0.35 ENSMUST00000162280.1
lipoma HMGIC fusion partner-like protein 4
chr12_+_8771317 0.34 ENSMUST00000020911.7
syndecan 1
chr19_+_32757497 0.33 ENSMUST00000013807.7
phosphatase and tensin homolog
chr13_+_117602439 0.29 ENSMUST00000006991.7
hyperpolarization-activated, cyclic nucleotide-gated K+ 1
chr9_-_48835932 0.28 ENSMUST00000093852.3
zinc finger and BTB domain containing 16
chr13_-_40733768 0.28 ENSMUST00000110193.2
transcription factor AP-2, alpha
chr19_-_19001099 0.26 ENSMUST00000040153.8
RAR-related orphan receptor beta
chr12_-_75177325 0.25 ENSMUST00000042299.2
potassium voltage-gated channel, subfamily H (eag-related), member 5
chr7_-_4844665 0.24 ENSMUST00000066041.5
shisa homolog 7 (Xenopus laevis)
chr9_+_68653761 0.24 ENSMUST00000034766.7
RAR-related orphan receptor alpha
chr18_+_40258361 0.22 ENSMUST00000091927.4
potassium channel tetramerisation domain containing 16
chr9_+_74861888 0.21 ENSMUST00000056006.9
one cut domain, family member 1
chr1_-_13589717 0.21 ENSMUST00000027068.4
translocating chain-associating membrane protein 1
chr13_+_41606216 0.20 ENSMUST00000129449.1
transmembrane protein 170B
chr7_-_134938264 0.20 ENSMUST00000171394.1
family with sequence similarity 196, member A
chr5_-_92505518 0.20 ENSMUST00000031377.7
scavenger receptor class B, member 2
chr2_+_172549581 0.19 ENSMUST00000030391.2
transcription factor AP-2, gamma
chr11_-_103749815 0.19 ENSMUST00000018630.2
wingless-type MMTV integration site 9B
chr18_-_61400363 0.18 ENSMUST00000063307.5
peroxisome proliferative activated receptor, gamma, coactivator 1 beta
chr3_-_84304762 0.17 ENSMUST00000107692.1
tripartite motif-containing 2
chr6_-_136171722 0.17 ENSMUST00000053880.6
glutamate receptor, ionotropic, NMDA2B (epsilon 2)
chr2_+_119325784 0.17 ENSMUST00000102517.3
delta-like 4 (Drosophila)
chr12_+_64917901 0.17 ENSMUST00000058135.4
predicted gene 527
chr11_-_6065737 0.16 ENSMUST00000002817.5
calcium/calmodulin-dependent protein kinase II, beta
chr4_-_91372028 0.16 ENSMUST00000107110.1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr6_-_120493807 0.16 ENSMUST00000178687.1
cat eye syndrome chromosome region, candidate 6
chr12_-_119238794 0.15 ENSMUST00000026360.8
integrin beta 8
chr3_-_152982240 0.15 ENSMUST00000044278.5
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
chr11_+_4186789 0.15 ENSMUST00000041042.6
TBC1 domain family, member 10a
chr8_-_17535251 0.14 ENSMUST00000082104.6
CUB and Sushi multiple domains 1
chr4_+_123904832 0.14 ENSMUST00000030400.7
c-myc binding protein
chr2_+_32606979 0.14 ENSMUST00000113289.1
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
chr5_+_125532377 0.14 ENSMUST00000031446.6
transmembrane protein 132B
chr4_+_57434247 0.12 ENSMUST00000102905.1
paralemmin 2
chr4_+_149518216 0.12 ENSMUST00000030839.6
catenin beta interacting protein 1
chr1_-_67038824 0.12 ENSMUST00000119559.1
LanC (bacterial lantibiotic synthetase component C)-like 1
chr7_+_5350542 0.12 ENSMUST00000056639.6
predicted gene 5065
chr14_+_120478443 0.11 ENSMUST00000062117.6
RAS related protein 2a
chr18_-_24530203 0.11 ENSMUST00000046206.3
regulation of nuclear pre-mRNA domain containing 1A
chr2_-_64097994 0.11 ENSMUST00000131615.2
chr2_+_65845767 0.11 ENSMUST00000122912.1
cysteine-serine-rich nuclear protein 3
chr18_+_11052487 0.11 ENSMUST00000047762.7
GATA binding protein 6
chr2_+_74691090 0.10 ENSMUST00000061745.3
homeobox D10
chr7_+_46796088 0.10 ENSMUST00000006774.4
general transcription factor II H, polypeptide 1
chr4_+_124802543 0.10 ENSMUST00000138807.1
metal response element binding transcription factor 1
chrX_-_13846508 0.10 ENSMUST00000115436.2
calcium/calmodulin-dependent serine protein kinase (MAGUK family)
chr1_-_134361933 0.10 ENSMUST00000049470.4
transmembrane protein 183A
chr13_+_80883403 0.09 ENSMUST00000099356.2
arrestin domain containing 3
chr14_+_34673888 0.09 ENSMUST00000048263.7
wings apart-like homolog (Drosophila)
chr11_+_42419729 0.09 ENSMUST00000007797.4
gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
chr4_+_129820702 0.08 ENSMUST00000165853.1
protein tyrosine phosphatase 4a2
chr11_-_37235882 0.08 ENSMUST00000102801.1
teneurin transmembrane protein 2
chr11_-_118212715 0.08 ENSMUST00000106302.2
cytohesin 1
chr6_+_103510874 0.08 ENSMUST00000066905.6
cell adhesion molecule with homology to L1CAM
chr11_-_20831009 0.07 ENSMUST00000047028.8
lectin, galactoside binding-like
chr12_+_24651346 0.07 ENSMUST00000020982.5
Kruppel-like factor 11
chr5_+_65537209 0.07 ENSMUST00000142407.1
ubiquitin-conjugating enzyme E2K
chr5_+_119834663 0.07 ENSMUST00000018407.6
T-box 5
chr8_-_27128615 0.07 ENSMUST00000033877.4
BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
chrX_-_88115632 0.07 ENSMUST00000113966.1
interleukin 1 receptor accessory protein-like 1
chr7_-_128740471 0.07 ENSMUST00000119081.1
MCM (minichromosome maintenance deficient) binding protein
chr18_+_32163073 0.06 ENSMUST00000096575.3
mitogen-activated protein kinase kinase kinase 2
chr16_+_32332238 0.05 ENSMUST00000115151.3
UBX domain protein 7
chr5_+_150952607 0.05 ENSMUST00000078856.6
chr16_-_67620880 0.05 ENSMUST00000114292.1
cell adhesion molecule 2
chr2_-_73892530 0.05 ENSMUST00000136958.1
activating transcription factor 2
chr1_-_136960427 0.05 ENSMUST00000027649.7
nuclear receptor subfamily 5, group A, member 2
chr2_+_122028544 0.05 ENSMUST00000028668.7
eukaryotic translation initiation factor 3, subunit J1
chr8_+_88199194 0.05 ENSMUST00000119033.1
PAP associated domain containing 5
chr19_-_5118224 0.05 ENSMUST00000113728.1
kinesin light chain 2
chr1_-_63114516 0.05 ENSMUST00000097718.2
INO80 complex subunit D
chr18_+_24205303 0.04 ENSMUST00000000430.7
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
chr4_-_136956784 0.04 ENSMUST00000030420.8
Eph receptor A8
chr11_+_93996082 0.04 ENSMUST00000041956.7
sperm associated antigen 9
chr13_-_9764371 0.04 ENSMUST00000146059.1
zinc finger, MYND domain containing 11
chr4_-_49845549 0.04 ENSMUST00000093859.4
glutamate receptor ionotropic, NMDA3A
chr3_-_122619663 0.04 ENSMUST00000162409.1
formin binding protein 1-like
chr1_+_153652943 0.03 ENSMUST00000041776.5
regulator of G-protein signaling 8
chrX_+_151198078 0.03 ENSMUST00000184730.1
WNK lysine deficient protein kinase 3
chr1_+_70725715 0.03 ENSMUST00000053922.5
von Willebrand factor C domain-containing protein 2-like
chr8_-_84800024 0.03 ENSMUST00000126806.1
nuclear factor I/X
chr16_-_50432340 0.03 ENSMUST00000066037.6
bobby sox homolog (Drosophila)
chr11_-_97187872 0.03 ENSMUST00000001479.4
karyopherin (importin) beta 1
chr18_+_76241580 0.03 ENSMUST00000168423.1
SMAD family member 2
chr2_-_50296680 0.03 ENSMUST00000144143.1
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
chr15_+_80234071 0.03 ENSMUST00000023048.4
mitochondrial elongation factor 1
chr9_+_59578192 0.02 ENSMUST00000118549.1
CUGBP, Elav-like family member 6
chr4_+_31964081 0.02 ENSMUST00000037607.4
mitogen-activated protein kinase kinase kinase 7
chr4_+_132274369 0.02 ENSMUST00000030731.4
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr2_-_65567465 0.02 ENSMUST00000066432.5
sodium channel, voltage-gated, type III, alpha
chr9_+_21165714 0.02 ENSMUST00000039413.8
phosphodiesterase 4A, cAMP specific
chr8_+_14095849 0.02 ENSMUST00000152652.1
discs, large (Drosophila) homolog-associated protein 2
chr10_+_75060885 0.02 ENSMUST00000164107.1
breakpoint cluster region
chr5_-_144965793 0.02 ENSMUST00000110677.1
SMAD specific E3 ubiquitin protein ligase 1
chr13_+_44731265 0.02 ENSMUST00000173246.1
jumonji, AT rich interactive domain 2
chr12_+_29528382 0.01 ENSMUST00000049784.9
myelin transcription factor 1-like
chr7_-_80115294 0.01 ENSMUST00000107384.3
isocitrate dehydrogenase 2 (NADP+), mitochondrial
chr15_-_96699698 0.01 ENSMUST00000023099.6
solute carrier family 38, member 2
chr6_+_92091378 0.01 ENSMUST00000113460.1
nuclear receptor subfamily 2, group C, member 2
chr1_+_187997821 0.01 ENSMUST00000027906.6
estrogen-related receptor gamma
chr1_+_6214627 0.00 ENSMUST00000027040.6
RB1-inducible coiled-coil 1
chr15_+_80711292 0.00 ENSMUST00000067689.7
trinucleotide repeat containing 6b
chr6_+_90369486 0.00 ENSMUST00000113539.1
ZXD family zinc finger C
chr4_-_126429501 0.00 ENSMUST00000069097.6
argonaute RISC catalytic subunit 3
chr4_-_82859571 0.00 ENSMUST00000156055.1
zinc finger, DHHC domain containing 21

Network of associatons between targets according to the STRING database.

First level regulatory network of ACCCUGU

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0048294 regulation of memory T cell differentiation(GO:0043380) negative regulation of isotype switching to IgE isotypes(GO:0048294)
0.1 0.3 GO:0048627 myoblast development(GO:0048627)
0.1 0.3 GO:0090071 negative regulation of ribosome biogenesis(GO:0090071)
0.1 0.3 GO:1902630 regulation of membrane hyperpolarization(GO:1902630)
0.1 0.3 GO:0021622 oculomotor nerve morphogenesis(GO:0021622) oculomotor nerve formation(GO:0021623)
0.1 0.4 GO:0036233 glycine import(GO:0036233)
0.1 0.4 GO:0006842 tricarboxylic acid transport(GO:0006842) citrate transport(GO:0015746)
0.1 0.2 GO:1903588 blood vessel lumenization(GO:0072554) negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis(GO:1903588)
0.1 0.2 GO:0060466 activation of meiosis involved in egg activation(GO:0060466)
0.0 0.2 GO:0060598 dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis(GO:0060598)
0.0 0.2 GO:0099566 regulation of postsynaptic cytosolic calcium ion concentration(GO:0099566)
0.0 0.3 GO:0000160 phosphorelay signal transduction system(GO:0000160)
0.0 0.2 GO:0072181 mesonephric duct formation(GO:0072181)
0.0 0.1 GO:0007493 endodermal cell fate determination(GO:0007493)
0.0 0.3 GO:0098728 germ-line stem cell division(GO:0042078) male germ-line stem cell asymmetric division(GO:0048133) positive regulation of NK T cell differentiation(GO:0051138) germline stem cell asymmetric division(GO:0098728)
0.0 0.1 GO:0090327 negative regulation of locomotion involved in locomotory behavior(GO:0090327)
0.0 0.2 GO:0010694 positive regulation of alkaline phosphatase activity(GO:0010694)
0.0 0.3 GO:0046549 retinal cone cell development(GO:0046549)
0.0 0.1 GO:0003218 cardiac left ventricle formation(GO:0003218)
0.0 0.1 GO:0002528 regulation of vascular permeability involved in acute inflammatory response(GO:0002528)
0.0 0.6 GO:0060384 innervation(GO:0060384)
0.0 0.0 GO:0071211 protein targeting to vacuole involved in autophagy(GO:0071211)
0.0 0.3 GO:0009312 oligosaccharide biosynthetic process(GO:0009312)
0.0 0.2 GO:0048172 regulation of short-term neuronal synaptic plasticity(GO:0048172)
0.0 0.2 GO:2000188 regulation of cholesterol homeostasis(GO:2000188)
0.0 0.1 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.0 GO:2000686 regulation of rubidium ion transmembrane transporter activity(GO:2000686)
0.0 0.2 GO:0006622 protein targeting to lysosome(GO:0006622)
0.0 0.1 GO:0032915 positive regulation of transforming growth factor beta2 production(GO:0032915)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0098855 HCN channel complex(GO:0098855)
0.0 0.2 GO:1990851 Wnt-Frizzled-LRP5/6 complex(GO:1990851)
0.0 0.3 GO:0035749 myelin sheath adaxonal region(GO:0035749)
0.0 0.2 GO:0043202 lysosomal lumen(GO:0043202)
0.0 0.2 GO:0043083 synaptic cleft(GO:0043083)
0.0 0.1 GO:0000439 core TFIIH complex(GO:0000439)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.1 0.4 GO:0015137 citrate transmembrane transporter activity(GO:0015137) tricarboxylic acid transmembrane transporter activity(GO:0015142)
0.1 0.3 GO:0008502 melatonin receptor activity(GO:0008502)
0.0 0.3 GO:0005222 intracellular cAMP activated cation channel activity(GO:0005222)
0.0 0.2 GO:0008142 oxysterol binding(GO:0008142)
0.0 0.3 GO:0000155 phosphorelay sensor kinase activity(GO:0000155)
0.0 0.5 GO:0001161 intronic transcription regulatory region sequence-specific DNA binding(GO:0001161)
0.0 0.3 GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity(GO:0001665)
0.0 0.4 GO:0015187 glycine transmembrane transporter activity(GO:0015187)
0.0 0.1 GO:0031699 beta-3 adrenergic receptor binding(GO:0031699)
0.0 0.2 GO:1990430 extracellular matrix protein binding(GO:1990430)
0.0 0.2 GO:0099583 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential(GO:0099529) neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration(GO:0099583)
0.0 0.3 GO:0001206 transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206)
0.0 0.2 GO:0039706 co-receptor binding(GO:0039706)
0.0 0.1 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.0 0.1 GO:0001032 RNA polymerase III type 3 promoter DNA binding(GO:0001032)
0.0 0.1 GO:0005237 inhibitory extracellular ligand-gated ion channel activity(GO:0005237)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 PID INTEGRIN5 PATHWAY Beta5 beta6 beta7 and beta8 integrin cell surface interactions

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK Genes involved in Negative regulation of the PI3K/AKT network
0.0 0.4 REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS Genes involved in Na+/Cl- dependent neurotransmitter transporters
0.0 0.5 REACTOME METAL ION SLC TRANSPORTERS Genes involved in Metal ion SLC transporters
0.0 0.3 REACTOME HS GAG DEGRADATION Genes involved in HS-GAG degradation
0.0 0.3 REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION Genes involved in Unblocking of NMDA receptor, glutamate binding and activation
0.0 0.2 REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor
0.0 0.4 REACTOME FATTY ACYL COA BIOSYNTHESIS Genes involved in Fatty Acyl-CoA Biosynthesis