hg19_v2_chr9_-_124989804_124989865	1.00614	SOX9	ENST00000373755.2|LHX6|ENSG00000106852.11|LIM homeobox 6 	ENST00000373754.2|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr1_-_26232951_26232959	0.864097	SOX9	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr1_-_26232522_26232644	0.86028	SOX9	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr10_+_102106829_102106881	0.755859	SOX9	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr5_-_146833485_146833522	0.728637	SOX9	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr7_+_155090271_155090382	0.586616	SOX9	ENST00000476756.1|INSIG1|ENSG00000186480.8|insulin induced gene 1
hg19_v2_chr8_+_26435359_26435426	0.578543	SOX9	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr3_-_46904946_46904973	0.572384	SOX9	ENST00000292327.4|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr3_-_46904918_46904940	0.571016	SOX9	ENST00000395869.1|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr1_-_173991434_173991556	0.569579	SOX9	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr5_-_43313574_43313614	0.543031	SOX9	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chr2_+_10262857_10262873	0.532339	SOX9	ENST00000304567.5|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr17_+_75447326_75447457	0.530737	SOX9	ENST00000591088.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr9_+_80912059_80912081	0.527165	SOX9	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chr5_-_16936340_16936418	0.512886	SOX9	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr5_-_146833222_146833261	0.507176	SOX9	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr12_-_95945246_95945270	0.482872	SOX9	ENST00000258499.3|USP44|ENSG00000136014.7|ubiquitin specific peptidase 44
hg19_v2_chr16_+_15528332_15528385	0.442152	SOX9	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr19_+_58514229_58514289	0.438011	SOX9	ENST00000546949.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000553254.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000547364.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein
hg19_v2_chr4_+_175204818_175204833	0.419357	SOX9	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr17_+_67498538_67498570	0.416266	SOX9	ENST00000589647.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr15_-_41624685_41624819	0.414371	SOX9	ENST00000560640.1|OIP5|ENSG00000104147.4|Opa interacting protein 5 	ENST00000220514.3|OIP5|ENSG00000104147.4|Opa interacting protein 5
hg19_v2_chr3_+_111718173_111718195	0.409289	SOX9	ENST00000494932.1|TAGLN3|ENSG00000144834.8|transgelin 3
hg19_v2_chr1_+_156119466_156119514	0.406936	SOX9	ENST00000414683.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr10_-_129924611_129924662	0.404995	SOX9	ENST00000368654.3|MKI67|ENSG00000148773.8|marker of proliferation Ki-67
hg19_v2_chr10_+_91461337_91461380	0.39897	SOX9	ENST00000260753.4|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000416354.1|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000394289.2|KIF20B|ENSG00000138182.10|kinesin family member 20B 	ENST00000371728.3|KIF20B|ENSG00000138182.10|kinesin family member 20B
hg19_v2_chr7_+_77167376_77167395	0.396405	SOX9	ENST00000435495.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr12_-_8815215_8815298	0.394688	SOX9	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr12_-_8815299_8815331	0.394365	SOX9	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr11_+_36317830_36317850	0.386242	SOX9	ENST00000530639.1|PRR5L|ENSG00000135362.9|proline rich 5 like
hg19_v2_chr15_+_41624892_41625111	0.384382	SOX9	ENST00000260359.6|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000450318.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000450592.2|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000559596.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000414849.2|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000560747.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1 	ENST00000560177.1|NUSAP1|ENSG00000137804.8|nucleolar and spindle associated protein 1
hg19_v2_chr11_-_94965667_94965705	0.375115	SOX9	ENST00000542176.1|SESN3|ENSG00000149212.6|sestrin 3 	ENST00000278499.2|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr2_+_54683419_54683442	0.365783	SOX9	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr3_-_185826855_185826911	0.36547	SOX9	ENST00000306376.5|ETV5|ENSG00000244405.3|ets variant 5
hg19_v2_chr17_+_9066252_9066271	0.364586	SOX9	ENST00000436734.1|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr2_+_61293021_61293093	0.360219	SOX9	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chr2_+_102314161_102314206	0.354956	SOX9	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr3_+_111718036_111718047	0.353969	SOX9	ENST00000455401.2|TAGLN3|ENSG00000144834.8|transgelin 3
hg19_v2_chr6_-_53213587_53213772	0.349347	SOX9	ENST00000542638.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370913.5|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000541407.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr10_+_74653330_74653345	0.347145	SOX9	ENST00000334011.5|OIT3|ENSG00000138315.8|oncoprotein induced transcript 3
hg19_v2_chr20_+_42086525_42086568	0.337851	SOX9	ENST00000244020.3|SRSF6|ENSG00000124193.10|serine/arginine-rich splicing factor 6
hg19_v2_chr7_+_141463897_141463897	0.32703	SOX9	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr17_+_7761013_7761074	0.324032	SOX9	ENST00000571846.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr2_-_70475730_70475798	0.321613	SOX9	ENST00000445587.1|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000433529.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein 	ENST00000415783.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr17_+_26646121_26646133	0.31888	SOX9	ENST00000226230.6|TMEM97|ENSG00000109084.9|transmembrane protein 97
hg19_v2_chr11_+_125496619_125496646	0.318038	SOX9	ENST00000532669.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000278916.3|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr14_+_24641062_24641246	0.317004	SOX9	ENST00000311457.3|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000557806.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein 	ENST00000559919.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr9_-_85882145_85882202	0.313133	SOX9	ENST00000328788.1|FRMD3|ENSG00000172159.11|FERM domain containing 3
hg19_v2_chr3_+_189507523_189507590	0.312472	SOX9	ENST00000437221.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392463.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392461.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000449992.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000456148.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr17_-_74722536_74722639	0.309423	SOX9	ENST00000585429.1|JMJD6|ENSG00000070495.10|jumonji domain containing 6
hg19_v2_chr7_-_111846435_111846471	0.307112	SOX9	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr5_-_146889619_146889639	0.299994	SOX9	ENST00000343218.5|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr2_-_70475701_70475717	0.294121	SOX9	ENST00000282574.4|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr1_-_243418344_243418356	0.292965	SOX9	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr2_-_200323414_200323468	0.290036	SOX9	ENST00000443023.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr19_+_45971246_45971265	0.28923	SOX9	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr7_+_77167343_77167369	0.286982	SOX9	ENST00000433369.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12 	ENST00000415482.2|PTPN12|ENSG00000127947.11|protein tyrosine phosphatase, non-receptor type 12
hg19_v2_chr1_-_19426149_19426221	0.286149	SOX9	ENST00000429347.2|UBR4|ENSG00000127481.10|ubiquitin protein ligase E3 component n-recognin 4
hg19_v2_chr15_+_40886199_40886236	0.285923	SOX9	ENST00000346991.5|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5 	ENST00000528975.1|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5 	ENST00000527044.1|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5
hg19_v2_chr5_+_159848807_159848847	0.282665	SOX9	ENST00000352433.5|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1
hg19_v2_chr17_+_75372165_75372357	0.282307	SOX9	ENST00000427674.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr9_+_103235365_103235419	0.280393	SOX9	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr17_+_33914460_33914536	0.279349	SOX9	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chrX_-_117107542_117107677	0.278332	SOX9	ENST00000371878.1|KLHL13|ENSG00000003096.9|kelch-like family member 13
hg19_v2_chr2_+_208576259_208576278	0.277272	SOX9	ENST00000392209.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr17_+_26646175_26646295	0.276802	SOX9	ENST00000583381.1|TMEM97|ENSG00000109084.9|transmembrane protein 97 	ENST00000582113.1|TMEM97|ENSG00000109084.9|transmembrane protein 97 	ENST00000582384.1|TMEM97|ENSG00000109084.9|transmembrane protein 97
hg19_v2_chr2_+_223536428_223536505	0.273581	SOX9	ENST00000446656.3|MOGAT1|ENSG00000124003.9|monoacylglycerol O-acyltransferase 1
hg19_v2_chr1_-_243418621_243418648	0.273401	SOX9	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr1_+_26503894_26504025	0.273063	SOX9	ENST00000361530.6|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1 	ENST00000374253.5|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1
hg19_v2_chr12_+_56435637_56435745	0.27058	SOX9	ENST00000356464.5|RPS26|ENSG00000197728.5|ribosomal protein S26 	ENST00000552361.1|RPS26|ENSG00000197728.5|ribosomal protein S26
hg19_v2_chr17_+_33914276_33914386	0.264174	SOX9	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr4_-_110723194_110723207	0.262664	SOX9	ENST00000394635.3|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr11_-_46867780_46867848	0.260517	SOX9	ENST00000529230.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5 	ENST00000415402.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5 	ENST00000312055.5|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr2_-_208031542_208031595	0.257741	SOX9	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr6_-_11232891_11232915	0.254253	SOX9	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr5_+_172068232_172068320	0.253632	SOX9	ENST00000520919.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000522853.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000369800.5|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B
hg19_v2_chr5_+_159848854_159848917	0.250937	SOX9	ENST00000517480.1|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1 	ENST00000520452.1|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1 	ENST00000393964.1|PTTG1|ENSG00000164611.8|pituitary tumor-transforming 1
hg19_v2_chr5_+_74633036_74633085	0.248121	SOX9	ENST00000343975.5|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr7_+_5632436_5632454	0.247524	SOX9	ENST00000340250.6|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 	ENST00000382361.3|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)
hg19_v2_chr6_-_53213780_53213947	0.245607	SOX9	ENST00000304434.6|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370918.4|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr15_+_80696666_80696700	0.243435	SOX9	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr4_-_110723335_110723356	0.239438	SOX9	ENST00000394634.2|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr1_+_156119798_156119834	0.236554	SOX9	ENST00000355014.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr15_-_64673630_64673648	0.234926	SOX9	ENST00000558008.1|KIAA0101|ENSG00000166803.6|KIAA0101 	ENST00000559519.1|KIAA0101|ENSG00000166803.6|KIAA0101 	ENST00000380258.2|KIAA0101|ENSG00000166803.6|KIAA0101
hg19_v2_chr1_-_26233423_26233482	0.233085	SOX9	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chrX_-_15683147_15683159	0.227437	SOX9	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr17_+_7761301_7761396	0.227194	SOX9	ENST00000332439.4|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1 	ENST00000570446.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr10_+_49514698_49514736	0.225625	SOX9	ENST00000432379.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8 	ENST00000429041.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8 	ENST00000374189.1|MAPK8|ENSG00000107643.11|mitogen-activated protein kinase 8
hg19_v2_chr12_+_93096759_93096804	0.225365	SOX9	ENST00000544406.2|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr5_+_74632993_74633028	0.224743	SOX9	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr17_-_74722672_74722761	0.222058	SOX9	ENST00000397625.4|JMJD6|ENSG00000070495.10|jumonji domain containing 6 	ENST00000445478.2|JMJD6|ENSG00000070495.10|jumonji domain containing 6
hg19_v2_chrX_-_106959631_106959775	0.220458	SOX9	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr3_+_39509163_39509180	0.220342	SOX9	ENST00000436143.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000441980.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000311042.6|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr12_-_25055177_25055258	0.217419	SOX9	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chrX_+_48380205_48380257	0.216131	SOX9	ENST00000446158.1|EBP|ENSG00000147155.6|emopamil binding protein (sterol isomerase) 	ENST00000414061.1|EBP|ENSG00000147155.6|emopamil binding protein (sterol isomerase)
hg19_v2_chr12_+_93096619_93096750	0.215666	SOX9	ENST00000397833.3|C12orf74|ENSG00000214215.3|chromosome 12 open reading frame 74
hg19_v2_chr17_-_73149921_73149971	0.214481	SOX9	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr10_+_24498060_24498102	0.214398	SOX9	ENST00000376454.3|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376452.3|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr10_+_24528108_24528128	0.214027	SOX9	ENST00000438429.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr1_+_50571949_50571964	0.209656	SOX9	ENST00000357083.4|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr12_+_110011571_110011644	0.209373	SOX9	ENST00000539696.1|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000228510.3|MVK|ENSG00000110921.7|mevalonate kinase 	ENST00000392727.3|MVK|ENSG00000110921.7|mevalonate kinase
hg19_v2_chr1_-_182641367_182641386	0.209147	SOX9	ENST00000508450.1|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr4_-_5894777_5894799	0.208201	SOX9	ENST00000324989.7|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr22_+_38142235_38142297	0.207308	SOX9	ENST00000407319.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000403663.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000428075.1|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein
hg19_v2_chr11_-_33183048_33183077	0.203909	SOX9	ENST00000438862.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr13_+_98795505_98795522	0.200846	SOX9	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr13_+_98795434_98795480	0.200368	SOX9	ENST00000376586.2|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr7_-_107643674_107643700	0.199595	SOX9	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr12_-_54673871_54673925	0.198999	SOX9	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr1_+_10271674_10271674	0.196997	SOX9	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr14_-_31495569_31495636	0.194685	SOX9	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chrX_-_153599578_153599656	0.192401	SOX9	ENST00000360319.4|FLNA|ENSG00000196924.10|filamin A, alpha 	ENST00000344736.4|FLNA|ENSG00000196924.10|filamin A, alpha
hg19_v2_chr11_+_126139005_126139104	0.192242	SOX9	ENST00000263578.5|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1 	ENST00000442061.2|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1 	ENST00000532125.1|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1
hg19_v2_chr11_+_34654011_34654118	0.191676	SOX9	ENST00000531794.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr4_-_110723134_110723181	0.190033	SOX9	ENST00000510800.1|CFI|ENSG00000205403.8|complement factor I 	ENST00000512148.1|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr7_+_134464376_134464413	0.188184	SOX9	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr12_+_49212514_49212692	0.187206	SOX9	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr1_-_197115818_197115829	0.185393	SOX9	ENST00000367409.4|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 	ENST00000294732.7|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
hg19_v2_chr16_+_838614_838633	0.182242	SOX9	ENST00000262315.9|CHTF18|ENSG00000127586.12|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) 	ENST00000455171.2|CHTF18|ENSG00000127586.12|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)
hg19_v2_chr16_+_30934376_30934392	0.17996	SOX9	ENST00000562798.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19 	ENST00000471231.2|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr7_+_134464414_134464429	0.179321	SOX9	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr14_-_73493784_73493822	0.178332	SOX9	ENST00000553891.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr9_-_99064386_99064410	0.176532	SOX9	ENST00000375262.2|HSD17B3|ENSG00000130948.5|hydroxysteroid (17-beta) dehydrogenase 3
hg19_v2_chr16_+_3068393_3068446	0.17595	SOX9	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chrX_+_68048803_68048892	0.175647	SOX9	ENST00000204961.4|EFNB1|ENSG00000090776.5|ephrin-B1
hg19_v2_chr7_-_99699538_99699563	0.175033	SOX9	ENST00000343023.6|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7 	ENST00000303887.5|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7
hg19_v2_chr10_+_24497704_24497743	0.174206	SOX9	ENST00000376456.4|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000458595.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr11_-_76155618_76155676	0.173307	SOX9	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr9_+_4792869_4792902	0.173004	SOX9	ENST00000381750.4|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr1_-_156399184_156399225	0.172406	SOX9	ENST00000368243.1|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000357975.4|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000310027.5|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000400991.2|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61
hg19_v2_chr2_+_220492116_220492137	0.170376	SOX9	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr19_-_59030921_59030974	0.168118	SOX9	ENST00000354590.3|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45 	ENST00000596739.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr16_+_89989687_89989774	0.166279	SOX9	ENST00000315491.7|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000555576.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000554336.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000553967.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr4_+_2819883_2819948	0.165918	SOX9	ENST00000511747.1|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2 	ENST00000503393.2|SH3BP2|ENSG00000087266.11|SH3-domain binding protein 2
hg19_v2_chr15_-_64673665_64673709	0.165204	SOX9	ENST00000300035.4|KIAA0101|ENSG00000166803.6|KIAA0101
hg19_v2_chr4_+_95128996_95129056	0.163666	SOX9	ENST00000457823.2|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr2_-_175629135_175629148	0.16357	SOX9	ENST00000409542.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000409219.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle)
hg19_v2_chr3_-_123339418_123339473	0.163415	SOX9	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr2_+_208576355_208576475	0.162857	SOX9	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr9_+_27109392_27109435	0.162689	SOX9	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr22_-_21984282_21984359	0.1626	SOX9	ENST00000398873.3|YDJC|ENSG00000161179.9|YdjC homolog (bacterial) 	ENST00000292778.6|YDJC|ENSG00000161179.9|YdjC homolog (bacterial)
hg19_v2_chr4_+_154125565_154125626	0.161945	SOX9	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr12_-_71003568_71003629	0.159893	SOX9	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr20_-_21378666_21378666	0.156584	SOX9	ENST00000351817.4|NKX2-4|ENSG00000125816.4|NK2 homeobox 4
hg19_v2_chr1_-_115259337_115259515	0.156505	SOX9	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr6_+_13272904_13272989	0.154419	SOX9	ENST00000379335.3|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1 	ENST00000379329.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chrX_-_135962876_135962896	0.153312	SOX9	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr8_+_79578282_79578334	0.152389	SOX9	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr11_+_1860200_1860219	0.151746	SOX9	ENST00000381911.1|TNNI2|ENSG00000130598.11|troponin I type 2 (skeletal, fast)
hg19_v2_chr3_+_189507432_189507459	0.151677	SOX9	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr3_-_123339343_123339401	0.151478	SOX9	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr5_+_76012009_76012024	0.151197	SOX9	ENST00000505600.1|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr4_+_95128748_95128794	0.150746	SOX9	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr14_-_73493825_73493920	0.150263	SOX9	ENST00000318876.5|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1 	ENST00000556143.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr17_+_36584662_36584730	0.148807	SOX9	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr22_+_35796108_35796172	0.146719	SOX9	ENST00000382011.5|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5 	ENST00000416905.1|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5
hg19_v2_chr7_+_18535346_18535399	0.146169	SOX9	ENST00000405010.3|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000406451.4|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000428307.2|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr3_+_69985734_69985754	0.145648	SOX9	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr12_-_81763184_81763202	0.145099	SOX9	ENST00000548670.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000541570.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000553058.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr8_-_95449155_95449188	0.143904	SOX9	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr16_-_67217844_67217943	0.143244	SOX9	ENST00000563902.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000561621.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000290881.7|KIAA0895L|ENSG00000196123.8|KIAA0895-like
hg19_v2_chr22_+_35796056_35796090	0.140457	SOX9	ENST00000216122.4|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5
hg19_v2_chr3_+_88108381_88108450	0.140239	SOX9	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr6_+_30594619_30594665	0.140129	SOX9	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr2_-_61765315_61765422	0.13998	SOX9	ENST00000406957.1|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast) 	ENST00000401558.2|XPO1|ENSG00000082898.12|exportin 1 (CRM1 homolog, yeast)
hg19_v2_chr4_-_83350580_83350600	0.139551	SOX9	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr17_-_57232525_57232584	0.139317	SOX9	ENST00000583380.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000580541.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000578105.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000437036.2|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr10_-_105845674_105845760	0.138897	SOX9	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr11_+_196738_196779	0.138857	SOX9	ENST00000325113.4|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3 	ENST00000342593.5|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3
hg19_v2_chr10_-_81205373_81205429	0.13879	SOX9	ENST00000372336.3|ZCCHC24|ENSG00000165424.6|zinc finger, CCHC domain containing 24
hg19_v2_chr17_-_38210644_38210675	0.138489	SOX9	ENST00000394128.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000394127.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000356271.3|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000535071.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580885.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000543759.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000537674.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580517.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000578161.1|MED24|ENSG00000008838.13|mediator complex subunit 24
hg19_v2_chr19_-_59031118_59031193	0.138372	SOX9	ENST00000600990.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr9_+_27109133_27109187	0.13794	SOX9	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr19_+_16187816_16187838	0.137885	SOX9	ENST00000588410.1|TPM4|ENSG00000167460.10|tropomyosin 4
hg19_v2_chr14_-_95236551_95236576	0.13781	SOX9	ENST00000238558.3|GSC|ENSG00000133937.3|goosecoid homeobox
hg19_v2_chr3_+_39509070_39509101	0.137452	SOX9	ENST00000354668.4|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000428261.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000420739.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000415443.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000447324.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000383754.3|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr11_-_33183006_33183046	0.137161	SOX9	ENST00000524827.1|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 	ENST00000323959.4|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa 	ENST00000431742.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr4_+_95129061_95129198	0.137117	SOX9	ENST00000354268.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr6_-_30654977_30655009	0.136147	SOX9	ENST00000399199.3|PPP1R18|ENSG00000146112.7|protein phosphatase 1, regulatory subunit 18
hg19_v2_chr16_-_3068171_3068191	0.135671	SOX9	ENST00000572154.1|CLDN6|ENSG00000184697.6|claudin 6 	ENST00000328796.4|CLDN6|ENSG00000184697.6|claudin 6
hg19_v2_chr12_-_5352315_5352324	0.135373	SOX9	ENST00000536518.1|RP11-319E16.1|ENSG00000256115.1|RP11-319E16.1
hg19_v2_chr17_-_4871085_4871167	0.13355	SOX9	ENST00000575142.1|SPAG7|ENSG00000091640.3|sperm associated antigen 7 	ENST00000206020.3|SPAG7|ENSG00000091640.3|sperm associated antigen 7
hg19_v2_chr19_+_10765003_10765058	0.131491	SOX9	ENST00000407004.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589998.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589600.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr2_+_220492287_220492338	0.131158	SOX9	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr1_-_155880672_155880715	0.130944	SOX9	ENST00000609492.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368322.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr19_+_7660716_7660802	0.130831	SOX9	ENST00000160298.4|CAMSAP3|ENSG00000076826.5|calmodulin regulated spectrin-associated protein family, member 3 	ENST00000446248.2|CAMSAP3|ENSG00000076826.5|calmodulin regulated spectrin-associated protein family, member 3
hg19_v2_chrX_-_133931164_133931269	0.130677	SOX9	ENST00000370790.1|FAM122B|ENSG00000156504.12|family with sequence similarity 122B 	ENST00000298090.6|FAM122B|ENSG00000156504.12|family with sequence similarity 122B
hg19_v2_chr1_+_156589051_156589089	0.129977	SOX9	ENST00000255039.1|HAPLN2|ENSG00000132702.8|hyaluronan and proteoglycan link protein 2
hg19_v2_chr14_-_69619689_69619757	0.128403	SOX9	ENST00000389997.6|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000557386.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000554681.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr9_+_124461603_124461649	0.127724	SOX9	ENST00000373782.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr12_-_24103954_24103972	0.125135	SOX9	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr11_+_68080077_68080127	0.124596	SOX9	ENST00000294304.7|LRP5|ENSG00000162337.7|low density lipoprotein receptor-related protein 5
hg19_v2_chr6_+_72596604_72596727	0.123773	SOX9	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr9_-_99064429_99064442	0.123743	SOX9	ENST00000375263.3|HSD17B3|ENSG00000130948.5|hydroxysteroid (17-beta) dehydrogenase 3
hg19_v2_chr12_+_49761224_49761259	0.123679	SOX9	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr2_+_220491973_220492049	0.123507	SOX9	ENST00000358055.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr12_-_10251603_10251619	0.121964	SOX9	ENST00000457018.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr3_-_112329110_112329127	0.119946	SOX9	ENST00000479368.1|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr12_+_49621658_49621709	0.119778	SOX9	ENST00000541364.1|TUBA1C|ENSG00000167553.10|tubulin, alpha 1c
hg19_v2_chr1_-_53018654_53018777	0.119231	SOX9	ENST00000257177.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000355809.4|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000528642.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000470626.1|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11 	ENST00000371544.3|ZCCHC11|ENSG00000134744.9|zinc finger, CCHC domain containing 11
hg19_v2_chr12_-_11548496_11548505	0.119035	SOX9	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chrX_-_110654147_110654194	0.117809	SOX9	ENST00000358070.4|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr7_+_23146271_23146285	0.117328	SOX9	ENST00000545771.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr2_+_168725458_168725458	0.117225	SOX9	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr18_-_34409116_34409158	0.116925	SOX9	ENST00000334295.4|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr19_+_13906250_13906274	0.116849	SOX9	ENST00000254323.2|ZSWIM4|ENSG00000132003.5|zinc finger, SWIM-type containing 4
hg19_v2_chr19_-_1568057_1568142	0.115435	SOX9	ENST00000402693.4|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D 	ENST00000388824.6|MEX3D|ENSG00000181588.15|mex-3 RNA binding family member D
hg19_v2_chr11_+_13299186_13299432	0.11517	SOX9	ENST00000527998.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000396441.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000533520.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529825.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389707.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000401424.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000529388.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000530357.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403290.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000361003.4|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000389708.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000403510.3|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like 	ENST00000482049.1|ARNTL|ENSG00000133794.13|aryl hydrocarbon receptor nuclear translocator-like
hg19_v2_chr8_-_80993010_80993073	0.114705	SOX9	ENST00000537855.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000520527.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000517427.1|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000448733.2|TPD52|ENSG00000076554.11|tumor protein D52 	ENST00000379097.3|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr2_+_111880242_111880289	0.114667	SOX9	ENST00000393252.3|BCL2L11|ENSG00000153094.17|BCL2-like 11 (apoptosis facilitator)
hg19_v2_chr12_-_49582593_49582682	0.114156	SOX9	ENST00000295766.5|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr19_-_45004556_45004581	0.113596	SOX9	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chrX_-_17878827_17878846	0.111557	SOX9	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr16_-_22385901_22385947	0.111508	SOX9	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr7_-_112635675_112635720	0.110881	SOX9	ENST00000447785.1|AC018464.3|ENSG00000234520.1|AC018464.3	ENST00000451962.1|AC018464.3|ENSG00000234520.1|AC018464.3
hg19_v2_chr9_+_2622085_2622174	0.110555	SOX9	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr3_+_14444063_14444133	0.10963	SOX9	ENST00000454876.2|SLC6A6|ENSG00000131389.12|solute carrier family 6 (neurotransmitter transporter), member 6 	ENST00000360861.3|SLC6A6|ENSG00000131389.12|solute carrier family 6 (neurotransmitter transporter), member 6 	ENST00000416216.2|SLC6A6|ENSG00000131389.12|solute carrier family 6 (neurotransmitter transporter), member 6
hg19_v2_chr13_+_111767650_111767874	0.108955	SOX9	ENST00000449979.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7 	ENST00000370623.3|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr1_+_165797024_165797069	0.10803	SOX9	ENST00000372212.4|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr7_-_11871815_11871831	0.107269	SOX9	ENST00000423059.4|THSD7A|ENSG00000005108.11|thrombospondin, type I, domain containing 7A
hg19_v2_chr5_+_40841276_40841312	0.106402	SOX9	ENST00000254691.5|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr9_+_71394945_71394988	0.105095	SOX9	ENST00000394264.3|FAM122A|ENSG00000187866.6|family with sequence similarity 122A
hg19_v2_chr14_+_32546145_32546239	0.104185	SOX9	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr14_+_55518349_55518423	0.103646	SOX9	ENST00000395468.4|MAPK1IP1L|ENSG00000168175.10|mitogen-activated protein kinase 1 interacting protein 1-like
hg19_v2_chr11_+_34073269_34073287	0.102649	SOX9	ENST00000389645.3|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr1_+_26737292_26737322	0.101868	SOX9	ENST00000254231.4|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr3_+_19189946_19190079	0.101862	SOX9	ENST00000328405.2|KCNH8|ENSG00000183960.4|potassium voltage-gated channel, subfamily H (eag-related), member 8
hg19_v2_chr19_+_39971470_39971498	0.101799	SOX9	ENST00000607714.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000599794.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000597666.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000601403.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000602028.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
hg19_v2_chr2_-_201828356_201828412	0.10159	SOX9	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr5_+_179159813_179159851	0.101164	SOX9	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr6_-_89927151_89927156	0.100975	SOX9	ENST00000454853.2|GABRR1|ENSG00000146276.7|gamma-aminobutyric acid (GABA) A receptor, rho 1
hg19_v2_chrX_+_46306624_46306709	0.100742	SOX9	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr20_+_20348740_20348765	0.100697	SOX9	ENST00000310227.1|INSM1|ENSG00000173404.3|insulinoma-associated 1
hg19_v2_chr14_-_91884150_91884234	0.100018	SOX9	ENST00000553403.1|CCDC88C|ENSG00000015133.14|coiled-coil domain containing 88C
hg19_v2_chr2_+_74425689_74425749	0.0996581	SOX9	ENST00000394053.2|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000409804.1|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000264090.4|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000394050.3|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000409601.1|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
hg19_v2_chr9_+_108463234_108463265	0.0993387	SOX9	ENST00000374688.1|TMEM38B|ENSG00000095209.7|transmembrane protein 38B
hg19_v2_chr3_-_57583130_57583152	0.0987698	SOX9	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr2_-_175869936_175869954	0.0983855	SOX9	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chrX_-_15872914_15873054	0.0980325	SOX9	ENST00000380291.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000545766.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000421527.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000329235.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit
hg19_v2_chr12_-_10251576_10251599	0.0972765	SOX9	ENST00000315330.4|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr11_+_125365110_125365110	0.0967869	SOX9	ENST00000527818.1|AP000708.1|ENSG00000255537.1|AP000708.1
hg19_v2_chr3_-_57583052_57583079	0.0967791	SOX9	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr11_-_76155700_76155736	0.0967362	SOX9	ENST00000572035.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr15_+_89922345_89922362	0.0963838	SOX9	ENST00000558982.1|LINC00925|ENSG00000255571.2|long intergenic non-protein coding RNA 925
hg19_v2_chr4_-_83351294_83351417	0.0961764	SOX9	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr18_-_44497308_44497499	0.0961576	SOX9	ENST00000585916.1|PIAS2|ENSG00000078043.11|protein inhibitor of activated STAT, 2 	ENST00000324794.7|PIAS2|ENSG00000078043.11|protein inhibitor of activated STAT, 2 	ENST00000545673.1|PIAS2|ENSG00000078043.11|protein inhibitor of activated STAT, 2
hg19_v2_chr19_-_51891209_51891233	0.0958195	SOX9	ENST00000221973.3|LIM2|ENSG00000105370.3|lens intrinsic membrane protein 2, 19kDa 	ENST00000596399.1|LIM2|ENSG00000105370.3|lens intrinsic membrane protein 2, 19kDa
hg19_v2_chr14_+_85996471_85996497	0.0955117	SOX9	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr12_-_81763127_81763171	0.0954703	SOX9	ENST00000541017.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr12_-_45270077_45270143	0.0945286	SOX9	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr22_+_31090793_31090889	0.0944712	SOX9	ENST00000332585.6|OSBP2|ENSG00000184792.11|oxysterol binding protein 2 	ENST00000382310.3|OSBP2|ENSG00000184792.11|oxysterol binding protein 2 	ENST00000446658.2|OSBP2|ENSG00000184792.11|oxysterol binding protein 2
hg19_v2_chr5_-_158526693_158526706	0.0940113	SOX9	ENST00000380654.4|EBF1|ENSG00000164330.12|early B-cell factor 1
hg19_v2_chr1_-_182642017_182642049	0.0939778	SOX9	ENST00000367557.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8 	ENST00000258302.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr6_+_37787704_37787718	0.0936159	SOX9	ENST00000474522.1|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr4_+_41614720_41614734	0.0930056	SOX9	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr19_+_10764937_10764998	0.0927003	SOX9	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr6_-_134861089_134861168	0.0926356	SOX9	ENST00000606039.1|RP11-557H15.4|ENSG00000232310.2|RP11-557H15.4
hg19_v2_chr3_-_52001448_52001478	0.0916965	SOX9	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr1_+_26737253_26737269	0.089278	SOX9	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr20_-_35492048_35492118	0.0891481	SOX9	ENST00000237536.4|SOGA1|ENSG00000149639.10|suppressor of glucose, autophagy associated 1
hg19_v2_chr1_-_93645818_93645918	0.0875807	SOX9	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr9_+_35538616_35538650	0.0874444	SOX9	ENST00000455600.1|RUSC2|ENSG00000198853.7|RUN and SH3 domain containing 2
hg19_v2_chr6_+_112408768_112408894	0.0867878	SOX9	ENST00000368656.2|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B 	ENST00000604268.1|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B
hg19_v2_chr4_+_54966198_54966340	0.0858427	SOX9	ENST00000326902.2|GSX2|ENSG00000180613.6|GS homeobox 2 	ENST00000503800.1|GSX2|ENSG00000180613.6|GS homeobox 2
hg19_v2_chr19_+_39971505_39971518	0.0853471	SOX9	ENST00000544017.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
hg19_v2_chr1_+_155579979_155580032	0.0851844	SOX9	ENST00000452804.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000538143.1|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000245564.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000368341.4|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator
hg19_v2_chr9_-_139965000_139965040	0.0849451	SOX9	ENST00000409687.3|SAPCD2|ENSG00000186193.7|suppressor APC domain containing 2
hg19_v2_chr16_+_14802801_14802801	0.0844554	SOX9	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr1_+_93913713_93913839	0.0842463	SOX9	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr6_+_30687978_30688141	0.0839444	SOX9	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr20_-_30310336_30310400	0.0826676	SOX9	ENST00000434194.1|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000376062.2|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr8_+_61429416_61429502	0.0823962	SOX9	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chrX_+_107288197_107288212	0.0819076	SOX9	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr17_-_40306934_40307035	0.0815267	SOX9	ENST00000592574.1|CTD-2132N18.3|ENSG00000267261.1|Uncharacterized protein  	ENST00000550406.1|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000547517.1|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000393860.3|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family 	ENST00000346213.4|RAB5C|ENSG00000108774.10|RAB5C, member RAS oncogene family
hg19_v2_chr6_+_43139037_43139094	0.0806614	SOX9	ENST00000265354.4|SRF|ENSG00000112658.6|serum response factor (c-fos serum response element-binding transcription factor)
hg19_v2_chr5_-_39425290_39425336	0.0800696	SOX9	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr11_+_64949899_64949941	0.0800617	SOX9	ENST00000531068.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527699.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533909.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527323.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr12_-_45270151_45270162	0.0795559	SOX9	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr5_+_15500280_15500312	0.0793671	SOX9	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr15_+_40886439_40886493	0.0789543	SOX9	ENST00000532056.1|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5 	ENST00000399668.2|CASC5|ENSG00000137812.15|cancer susceptibility candidate 5
hg19_v2_chr17_-_57232596_57232630	0.0775364	SOX9	ENST00000581068.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000330137.7|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr12_+_53443963_53443970	0.0768105	SOX9	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr12_-_54020107_54020199	0.0766725	SOX9	ENST00000588232.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000548446.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000420353.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000591397.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000415113.1|ATF7|ENSG00000170653.14|activating transcription factor 7
hg19_v2_chr5_-_39425222_39425283	0.0758421	SOX9	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr6_+_41040678_41040722	0.0754822	SOX9	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr12_+_53443680_53443858	0.0748645	SOX9	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr16_-_15474904_15474904	0.0746424	SOX9	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr14_-_71276211_71276255	0.0741412	SOX9	ENST00000381250.4|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9 	ENST00000555993.2|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9
hg19_v2_chr1_-_217311090_217311097	0.073892	SOX9	ENST00000493603.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000366940.2|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr2_-_209028300_209028316	0.0737769	SOX9	ENST00000304502.4|CRYGA|ENSG00000168582.4|crystallin, gamma A
hg19_v2_chrX_+_107288239_107288259	0.0737554	SOX9	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr5_-_39425068_39425098	0.073734	SOX9	ENST00000515700.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 	ENST00000339788.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr16_+_27561449_27561481	0.0729664	SOX9	ENST00000261588.4|KIAA0556|ENSG00000047578.8|KIAA0556
hg19_v2_chr7_+_102389434_102389497	0.0729189	SOX9	ENST00000409231.3|FAM185A|ENSG00000222011.4|family with sequence similarity 185, member A 	ENST00000418198.1|FAM185A|ENSG00000222011.4|family with sequence similarity 185, member A
hg19_v2_chr11_+_64949343_64949454	0.0727376	SOX9	ENST00000279247.6|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000532285.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000534373.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chrX_+_46306714_46306741	0.0724314	SOX9	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr16_-_46782221_46782263	0.0720864	SOX9	ENST00000394809.4|MYLK3|ENSG00000140795.8|myosin light chain kinase 3
hg19_v2_chr12_-_110011288_110011347	0.0717581	SOX9	ENST00000540016.1|MMAB|ENSG00000139428.7|methylmalonic aciduria (cobalamin deficiency) cblB type 	ENST00000266839.5|MMAB|ENSG00000139428.7|methylmalonic aciduria (cobalamin deficiency) cblB type
hg19_v2_chr12_-_54019755_54019804	0.0716924	SOX9	ENST00000588078.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000591834.1|RP11-793H13.10|ENSG00000267281.2|Uncharacterized protein  	ENST00000551480.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000548118.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000456903.4|ATF7|ENSG00000170653.14|activating transcription factor 7
hg19_v2_chr3_+_196466710_196466824	0.0714415	SOX9	ENST00000327134.3|PAK2|ENSG00000180370.6|p21 protein (Cdc42/Rac)-activated kinase 2
hg19_v2_chr18_+_42260861_42260882	0.0709314	SOX9	ENST00000282030.5|SETBP1|ENSG00000152217.12|SET binding protein 1
hg19_v2_chr3_-_128294929_128294929	0.0706391	SOX9	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr1_+_16085244_16085255	0.0704716	SOX9	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr1_-_200992827_200992867	0.0703572	SOX9	ENST00000332129.2|KIF21B|ENSG00000116852.10|kinesin family member 21B 	ENST00000422435.2|KIF21B|ENSG00000116852.10|kinesin family member 21B
hg19_v2_chr17_+_46970127_46970132	0.0690162	SOX9	ENST00000355938.5|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr21_+_30671690_30671762	0.0690007	SOX9	ENST00000399921.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr17_+_46970178_46970180	0.0681973	SOX9	ENST00000393366.2|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) 	ENST00000506855.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr7_+_28452130_28452154	0.0674391	SOX9	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr3_+_49058444_49058618	0.0674343	SOX9	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr11_-_67141090_67141208	0.0673182	SOX9	ENST00000312438.7|CLCF1|ENSG00000175505.9|cardiotrophin-like cytokine factor 1
hg19_v2_chr12_-_8815477_8815490	0.0670685	SOX9	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr22_+_50247449_50247515	0.0670123	SOX9	ENST00000216268.5|ZBED4|ENSG00000100426.6|zinc finger, BED-type containing 4
hg19_v2_chr10_+_73724123_73724206	0.066938	SOX9	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chr4_+_78079450_78079563	0.0664628	SOX9	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr16_-_53737795_53737850	0.066371	SOX9	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr15_-_59041768_59041950	0.0656864	SOX9	ENST00000402627.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000396140.2|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000559053.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10 	ENST00000561288.1|ADAM10|ENSG00000137845.10|ADAM metallopeptidase domain 10
hg19_v2_chr7_+_111846741_111846776	0.0652343	SOX9	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr5_+_76011868_76012005	0.0651345	SOX9	ENST00000319211.4|F2R|ENSG00000181104.6|coagulation factor II (thrombin) receptor
hg19_v2_chr1_-_119530428_119530572	0.0643478	SOX9	ENST00000369429.3|TBX15|ENSG00000092607.9|T-box 15
hg19_v2_chr3_-_149688502_149688526	0.0640828	SOX9	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr7_+_2671568_2671606	0.0634711	SOX9	ENST00000258796.7|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr16_-_15736881_15736928	0.0634509	SOX9	ENST00000540441.2|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr7_-_44887620_44887710	0.0629669	SOX9	ENST00000349299.3|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000521529.1|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000308153.4|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000350771.3|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000222690.6|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000381124.5|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000437072.1|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000446531.1|H2AFV|ENSG00000105968.14|H2A histone family, member V
hg19_v2_chr17_+_35851570_35851667	0.0627931	SOX9	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr7_+_120590803_120590857	0.0625298	SOX9	ENST00000315870.5|ING3|ENSG00000071243.11|inhibitor of growth family, member 3 	ENST00000339121.5|ING3|ENSG00000071243.11|inhibitor of growth family, member 3 	ENST00000445699.1|ING3|ENSG00000071243.11|inhibitor of growth family, member 3
hg19_v2_chr12_-_49463753_49463808	0.0624405	SOX9	ENST00000301068.6|RHEBL1|ENSG00000167550.6|Ras homolog enriched in brain like 1
hg19_v2_chr16_-_53737722_53737790	0.0622764	SOX9	ENST00000569716.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562588.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000562230.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000379925.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000563746.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000568653.3|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr8_-_101965559_101965570	0.0621662	SOX9	ENST00000353245.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr7_+_26191809_26191890	0.0616661	SOX9	ENST00000056233.3|NFE2L3|ENSG00000050344.8|nuclear factor, erythroid 2-like 3
hg19_v2_chr7_-_148725733_148725759	0.0616116	SOX9	ENST00000286091.4|PDIA4|ENSG00000155660.6|protein disulfide isomerase family A, member 4
hg19_v2_chr4_+_78079570_78079586	0.0615184	SOX9	ENST00000509972.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr5_-_147162263_147162338	0.0615007	SOX9	ENST00000333010.6|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2 	ENST00000265272.5|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr2_+_27274506_27274549	0.061464	SOX9	ENST00000451003.1|AGBL5|ENSG00000084693.11|ATP/GTP binding protein-like 5 	ENST00000323064.8|AGBL5|ENSG00000084693.11|ATP/GTP binding protein-like 5 	ENST00000360131.4|AGBL5|ENSG00000084693.11|ATP/GTP binding protein-like 5
hg19_v2_chr1_+_12834984_12834984	0.0607541	SOX9	ENST00000357726.4|PRAMEF12|ENSG00000116726.4|PRAME family member 12
hg19_v2_chr13_-_107214291_107214305	0.0604106	SOX9	ENST00000375926.1|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr16_+_68573116_68573228	0.0603375	SOX9	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr1_-_154164534_154164687	0.0591355	SOX9	ENST00000271850.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368530.2|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr7_+_16793160_16793160	0.0589984	SOX9	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr2_-_55276320_55276334	0.0589867	SOX9	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chrY_+_15016013_15016029	0.0585547	SOX9	ENST00000360160.4|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked 	ENST00000454054.1|DDX3Y|ENSG00000067048.12|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
hg19_v2_chr11_+_120255997_120256048	0.0578425	SOX9	ENST00000532993.1|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr3_+_25469802_25469866	0.0567231	SOX9	ENST00000330688.4|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr2_-_175629164_175629224	0.0561803	SOX9	ENST00000409323.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000261007.5|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000348749.5|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle)
hg19_v2_chr3_-_88108212_88108223	0.0560481	SOX9	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr17_-_7297519_7297593	0.055946	SOX9	ENST00000576362.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000571078.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr7_-_92855762_92855837	0.0555239	SOX9	ENST00000453812.2|HEPACAM2|ENSG00000188175.5|HEPACAM family member 2 	ENST00000394468.2|HEPACAM2|ENSG00000188175.5|HEPACAM family member 2
hg19_v2_chr7_+_2671663_2671790	0.0553475	SOX9	ENST00000407643.1|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chrX_+_70503037_70503095	0.0552788	SOX9	ENST00000535149.1|NONO|ENSG00000147140.11|non-POU domain containing, octamer-binding
hg19_v2_chr5_+_140739537_140739703	0.0552087	SOX9	ENST00000522605.1|PCDHGB2|ENSG00000253910.1|protocadherin gamma subfamily B, 2
hg19_v2_chr6_+_27100811_27100832	0.0549711	SOX9	ENST00000359193.2|HIST1H2AG|ENSG00000196787.2|histone cluster 1, H2ag
hg19_v2_chr11_+_60691924_60691966	0.0547751	SOX9	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr1_-_16539094_16539175	0.0545298	SOX9	ENST00000270747.3|ARHGEF19|ENSG00000142632.12|Rho guanine nucleotide exchange factor (GEF) 19
hg19_v2_chr10_+_74033672_74033688	0.0542487	SOX9	ENST00000307365.3|DDIT4|ENSG00000168209.4|DNA-damage-inducible transcript 4
hg19_v2_chr9_+_4792971_4792982	0.0540469	SOX9	ENST00000381732.3|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1 	ENST00000442869.1|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr6_-_112408661_112408743	0.0532662	SOX9	ENST00000368662.5|TUBE1|ENSG00000074935.9|tubulin, epsilon 1
hg19_v2_chr10_+_6244829_6244904	0.0530935	SOX9	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chr1_-_205904950_205905037	0.0529546	SOX9	ENST00000340781.4|SLC26A9|ENSG00000174502.14|solute carrier family 26 (anion exchanger), member 9
hg19_v2_chr6_-_139613269_139613280	0.0528607	SOX9	ENST00000358430.3|TXLNB|ENSG00000164440.10|taxilin beta
hg19_v2_chr5_+_178986693_178986820	0.0517968	SOX9	ENST00000437570.2|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1 	ENST00000393438.2|RUFY1|ENSG00000176783.10|RUN and FYVE domain containing 1
hg19_v2_chr3_+_189507460_189507471	0.0504957	SOX9	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr12_-_122985494_122985543	0.0502292	SOX9	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr12_+_124457746_124457842	0.0501134	SOX9	ENST00000392404.3|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000538932.2|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000540762.2|FAM101A|ENSG00000178882.9|family with sequence similarity 101, member A 	ENST00000337815.4|ZNF664|ENSG00000179195.11|zinc finger protein 664
hg19_v2_chr18_+_6729725_6730042	0.0500814	SOX9	ENST00000400091.2|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000583410.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28 	ENST00000584387.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr10_-_104953009_104953061	0.0497397	SOX9	ENST00000470299.1|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II 	ENST00000343289.5|NT5C2|ENSG00000076685.14|5'-nucleotidase, cytosolic II
hg19_v2_chr16_+_68573640_68573698	0.0497061	SOX9	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr5_-_141338627_141338627	0.0496037	SOX9	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr12_+_49761273_49761330	0.0493741	SOX9	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr5_+_138677515_138677581	0.0493688	SOX9	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr2_-_224810070_224810104	0.0493143	SOX9	ENST00000429915.1|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1 	ENST00000233055.4|WDFY1|ENSG00000085449.10|WD repeat and FYVE domain containing 1
hg19_v2_chr4_+_113152978_113152989	0.0490482	SOX9	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr14_+_57857262_57857334	0.0489306	SOX9	ENST00000555166.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000556492.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit 	ENST00000554703.1|NAA30|ENSG00000139977.9|N(alpha)-acetyltransferase 30, NatC catalytic subunit
hg19_v2_chr15_-_50411412_50411437	0.0485662	SOX9	ENST00000284509.6|ATP8B4|ENSG00000104043.10|ATPase, class I, type 8B, member 4
hg19_v2_chr12_+_22778116_22778139	0.0478507	SOX9	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chrX_-_24690771_24690794	0.0472905	SOX9	ENST00000379145.1|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr11_+_118955583_118955640	0.0471757	SOX9	ENST00000278715.3|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000536813.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000537841.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000542729.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000546302.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000442944.2|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000544387.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000543090.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase
hg19_v2_chr9_+_75263565_75263565	0.0471733	SOX9	ENST00000396237.3|TMC1|ENSG00000165091.11|transmembrane channel-like 1
hg19_v2_chr18_+_55102917_55102985	0.0466712	SOX9	ENST00000491143.2|ONECUT2|ENSG00000119547.5|one cut homeobox 2
hg19_v2_chr2_+_170590321_170590408	0.0461588	SOX9	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr3_-_149688655_149688737	0.0458175	SOX9	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr8_-_21645804_21645986	0.0451512	SOX9	ENST00000518077.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2 	ENST00000517892.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2
hg19_v2_chr6_+_43457317_43457360	0.0450219	SOX9	ENST00000438588.2|TJAP1|ENSG00000137221.10|tight junction associated protein 1 (peripheral)
hg19_v2_chr10_+_97803151_97803348	0.0447326	SOX9	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr12_+_69633372_69633396	0.0442018	SOX9	ENST00000456847.3|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa 	ENST00000266679.8|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr19_-_44439387_44439419	0.0440834	SOX9	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chr14_-_90420862_90420901	0.044047	SOX9	ENST00000556005.1|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000555872.1|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11
hg19_v2_chr6_+_28193037_28193117	0.0437803	SOX9	ENST00000531981.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000425468.2|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000252207.5|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000531979.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9 	ENST00000527436.1|ZSCAN9|ENSG00000137185.7|zinc finger and SCAN domain containing 9
hg19_v2_chr12_-_122985067_122985268	0.0427051	SOX9	ENST00000540586.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8 	ENST00000543897.1|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr5_-_60240858_60240905	0.0426961	SOX9	ENST00000426742.2|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000265038.5|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000543101.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8 	ENST00000439176.1|ERCC8|ENSG00000049167.9|excision repair cross-complementing rodent repair deficiency, complementation group 8
hg19_v2_chr3_-_88108192_88108203	0.0425246	SOX9	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr18_-_34408802_34408807	0.0421384	SOX9	ENST00000590842.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr1_-_167883327_167883352	0.0418757	SOX9	ENST00000476818.2|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367851.4|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367848.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr5_+_94890840_94890871	0.0415617	SOX9	ENST00000504763.1|ARSK|ENSG00000164291.12|arylsulfatase family, member K
hg19_v2_chr3_+_9439579_9439592	0.0415605	SOX9	ENST00000406341.1|SETD5|ENSG00000168137.11|SET domain containing 5
hg19_v2_chr7_+_129015484_129015519	0.0412338	SOX9	ENST00000490911.1|AHCYL2|ENSG00000158467.12|adenosylhomocysteinase-like 2
hg19_v2_chr8_+_11660227_11660306	0.041222	SOX9	ENST00000443614.2|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1 	ENST00000525900.1|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chrX_-_85302531_85302570	0.0410069	SOX9	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr21_+_34398153_34398250	0.0404045	SOX9	ENST00000382357.3|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2 	ENST00000430860.1|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2 	ENST00000333337.3|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2
hg19_v2_chr11_+_111808119_111808151	0.0403542	SOX9	ENST00000531396.1|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr9_-_21482312_21482312	0.0402605	SOX9	ENST00000448696.3|IFNE|ENSG00000184995.6|interferon, epsilon
hg19_v2_chr12_+_22778009_22778112	0.0400417	SOX9	ENST00000266517.4|ETNK1|ENSG00000139163.11|ethanolamine kinase 1 	ENST00000335148.3|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr1_-_201123546_201123581	0.0399387	SOX9	ENST00000435310.1|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000485839.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367330.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr9_-_72287191_72287222	0.0399365	SOX9	ENST00000265381.4|APBA1|ENSG00000107282.5|amyloid beta (A4) precursor protein-binding, family A, member 1
hg19_v2_chr3_+_111260954_111260977	0.039615	SOX9	ENST00000283285.5|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr7_-_99277610_99277626	0.0392904	SOX9	ENST00000343703.5|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000222982.4|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000439761.1|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5 	ENST00000339843.2|CYP3A5|ENSG00000106258.9|cytochrome P450, family 3, subfamily A, polypeptide 5
hg19_v2_chr5_+_40679584_40679600	0.0390127	SOX9	ENST00000302472.3|PTGER4|ENSG00000171522.5|prostaglandin E receptor 4 (subtype EP4)
hg19_v2_chr6_-_64029879_64029891	0.0389968	SOX9	ENST00000370658.5|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000485906.2|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain 	ENST00000370657.4|LGSN|ENSG00000146166.12|lengsin, lens protein with glutamine synthetase domain
hg19_v2_chr12_-_48963829_48963849	0.0388506	SOX9	ENST00000301046.2|LALBA|ENSG00000167531.2|lactalbumin, alpha- 	ENST00000549817.1|LALBA|ENSG00000167531.2|lactalbumin, alpha-
hg19_v2_chr10_-_32667660_32667735	0.0385638	SOX9	ENST00000375110.2|EPC1|ENSG00000120616.11|enhancer of polycomb homolog 1 (Drosophila)
hg19_v2_chr4_+_41614909_41614926	0.0381183	SOX9	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr10_-_97321112_97321163	0.0380636	SOX9	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr5_-_147162078_147162106	0.0379947	SOX9	ENST00000507386.1|JAKMIP2|ENSG00000176049.11|janus kinase and microtubule interacting protein 2
hg19_v2_chr5_+_140797296_140797427	0.0379338	SOX9	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr5_+_169931249_169931364	0.03782	SOX9	ENST00000520740.1|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr3_-_167191814_167191842	0.0375735	SOX9	ENST00000466903.1|SERPINI2|ENSG00000114204.10|serpin peptidase inhibitor, clade I (pancpin), member 2 	ENST00000264677.4|SERPINI2|ENSG00000114204.10|serpin peptidase inhibitor, clade I (pancpin), member 2
hg19_v2_chr3_+_178253993_178254025	0.0374445	SOX9	ENST00000420517.2|KCNMB2|ENSG00000197584.7|potassium large conductance calcium-activated channel, subfamily M, beta member 2 	ENST00000452583.1|KCNMB2|ENSG00000197584.7|potassium large conductance calcium-activated channel, subfamily M, beta member 2
hg19_v2_chr17_+_8213590_8213603	0.0372825	SOX9	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr9_+_34179003_34179064	0.0369932	SOX9	ENST00000545103.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000543944.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000536252.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000540348.1|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000297661.4|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1 	ENST00000379186.4|UBAP1|ENSG00000165006.9|ubiquitin associated protein 1
hg19_v2_chr8_+_133787586_133787673	0.0366512	SOX9	ENST00000395379.1|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000395386.2|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1 	ENST00000337920.4|PHF20L1|ENSG00000129292.16|PHD finger protein 20-like 1
hg19_v2_chr10_-_97321165_97321176	0.0366339	SOX9	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr19_+_24009879_24009921	0.0357989	SOX9	ENST00000354585.4|RPSAP58|ENSG00000205246.4|ribosomal protein SA pseudogene 58
hg19_v2_chr17_+_46970134_46970170	0.0353796	SOX9	ENST00000503641.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) 	ENST00000514808.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr1_+_196743912_196743925	0.0351858	SOX9	ENST00000367425.4|CFHR3|ENSG00000116785.9|complement factor H-related 3
hg19_v2_chr17_-_7297833_7297889	0.0350265	SOX9	ENST00000571802.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000576201.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000573213.1|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate) 	ENST00000324822.11|TMEM256-PLSCR3|ENSG00000187838.12|TMEM256-PLSCR3 readthrough (NMD candidate)
hg19_v2_chr4_+_113152881_113152912	0.0349973	SOX9	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr5_-_179780312_179780387	0.0349897	SOX9	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr1_-_79472365_79472443	0.0340891	SOX9	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chr20_+_60698180_60698208	0.0340318	SOX9	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr18_-_34408902_34409022	0.0340159	SOX9	ENST00000593035.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000383056.3|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000588909.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000590337.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr20_-_30795511_30795594	0.0334077	SOX9	ENST00000246229.4|PLAGL2|ENSG00000126003.6|pleiomorphic adenoma gene-like 2
hg19_v2_chr21_-_33104367_33104441	0.0333591	SOX9	ENST00000286835.7|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4 	ENST00000399804.1|SCAF4|ENSG00000156304.10|SR-related CTD-associated factor 4
hg19_v2_chr3_+_9439400_9439414	0.0331887	SOX9	ENST00000450326.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402198.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402466.1|SETD5|ENSG00000168137.11|SET domain containing 5
hg19_v2_chr15_-_34659349_34659479	0.0330537	SOX9	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr1_+_147374915_147374946	0.0329092	SOX9	ENST00000240986.4|GJA8|ENSG00000121634.4|gap junction protein, alpha 8, 50kDa
hg19_v2_chr1_-_113247543_113247770	0.0323388	SOX9	ENST00000414971.1|RHOC|ENSG00000155366.12|ras homolog family member C 	ENST00000534717.1|RHOC|ENSG00000155366.12|ras homolog family member C
hg19_v2_chr5_+_69321074_69321200	0.0321433	SOX9	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr6_+_56911336_56911347	0.0320904	SOX9	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr3_-_182698381_182698431	0.0319088	SOX9	ENST00000292782.4|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr11_-_102323740_102323780	0.0317032	SOX9	ENST00000398136.2|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr6_-_15586238_15586256	0.0316753	SOX9	ENST00000462989.2|DTNBP1|ENSG00000047579.15|dystrobrevin binding protein 1
hg19_v2_chr5_+_60241020_60241162	0.0314935	SOX9	ENST00000511107.1|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 	ENST00000502658.1|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
hg19_v2_chr7_+_45039783_45039821	0.0314873	SOX9	ENST00000258781.6|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000541586.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000544363.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2
hg19_v2_chr4_-_175204765_175204843	0.0313203	SOX9	ENST00000513696.1|FBXO8|ENSG00000164117.8|F-box protein 8 	ENST00000503293.1|FBXO8|ENSG00000164117.8|F-box protein 8
hg19_v2_chr13_-_41593425_41593480	0.0311851	SOX9	ENST00000239882.3|ELF1|ENSG00000120690.9|E74-like factor 1 (ets domain transcription factor)
hg19_v2_chr4_-_76598296_76598318	0.0311278	SOX9	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr21_-_40720974_40720994	0.0309363	SOX9	ENST00000380748.1|HMGN1|ENSG00000205581.6|high mobility group nucleosome binding domain 1
hg19_v2_chr1_+_155293702_155293729	0.030826	SOX9	ENST00000368347.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr1_+_25071848_25071944	0.0307202	SOX9	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr14_+_32546274_32546295	0.0306233	SOX9	ENST00000396582.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr22_-_50524298_50524331	0.0299849	SOX9	ENST00000311597.5|MLC1|ENSG00000100427.11|megalencephalic leukoencephalopathy with subcortical cysts 1
hg19_v2_chr6_+_72596406_72596454	0.0299598	SOX9	ENST00000491071.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr8_-_38325219_38325418	0.0296903	SOX9	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr6_+_64282447_64282586	0.0295609	SOX9	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr5_+_50678921_50678921	0.0294345	SOX9	ENST00000230658.7|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr7_+_129710350_129710434	0.0287051	SOX9	ENST00000335420.5|KLHDC10|ENSG00000128607.9|kelch domain containing 10 	ENST00000463413.1|KLHDC10|ENSG00000128607.9|kelch domain containing 10
hg19_v2_chr8_+_42195972_42195991	0.0279407	SOX9	ENST00000532157.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000265421.4|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000520008.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr3_-_101232019_101232085	0.0277617	SOX9	ENST00000394095.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394091.1|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000394094.2|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000358203.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000348610.3|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7 	ENST00000314261.7|SENP7|ENSG00000138468.11|SUMO1/sentrin specific peptidase 7
hg19_v2_chr12_-_49582978_49583107	0.0277317	SOX9	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr19_+_10765699_10765728	0.0275441	SOX9	ENST00000590009.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr11_-_8190534_8190602	0.0274749	SOX9	ENST00000309737.6|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000425599.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000539720.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000531450.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000419822.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000335425.7|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000343202.4|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone
hg19_v2_chr6_+_97372596_97372644	0.0273037	SOX9	ENST00000369261.4|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr2_+_109271481_109271509	0.0272372	SOX9	ENST00000542845.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1 	ENST00000393314.2|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr8_+_11660120_11660221	0.0270507	SOX9	ENST00000220584.4|FDFT1|ENSG00000079459.8|farnesyl-diphosphate farnesyltransferase 1
hg19_v2_chrX_+_12993336_12993363	0.0269332	SOX9	ENST00000380635.1|TMSB4X|ENSG00000205542.6|thymosin beta 4, X-linked
hg19_v2_chr17_+_58677539_58677610	0.0268287	SOX9	ENST00000305921.3|PPM1D|ENSG00000170836.7|protein phosphatase, Mg2+/Mn2+ dependent, 1D
hg19_v2_chr8_-_38326139_38326161	0.0264937	SOX9	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr5_+_137688285_137688429	0.0259504	SOX9	ENST00000314358.5|KDM3B|ENSG00000120733.9|lysine (K)-specific demethylase 3B
hg19_v2_chr1_+_164529004_164529060	0.0257112	SOX9	ENST00000559240.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000367897.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000540236.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000401534.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr10_-_13570533_13570533	0.0256684	SOX9	ENST00000396900.2|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000396898.2|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr11_-_79151695_79151710	0.0251219	SOX9	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr6_+_84569359_84569445	0.024743	SOX9	ENST00000369681.5|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4 	ENST00000369679.4|CYB5R4|ENSG00000065615.9|cytochrome b5 reductase 4
hg19_v2_chr1_+_244998602_244998646	0.0247152	SOX9	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr11_-_102323489_102323576	0.02468	SOX9	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr5_+_60240943_60241011	0.0246444	SOX9	ENST00000296597.5|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
hg19_v2_chr3_-_48470838_48470872	0.024639	SOX9	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr3_-_149688896_149688970	0.0244626	SOX9	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chrX_-_45060135_45060149	0.0244384	SOX9	ENST00000398000.2|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36 	ENST00000377934.4|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36
hg19_v2_chr1_+_200708671_200708744	0.0244155	SOX9	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr11_+_111807863_111807937	0.0240174	SOX9	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr1_-_201123586_201123637	0.0240155	SOX9	ENST00000414605.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367334.5|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367332.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr10_+_22605374_22605387	0.023938	SOX9	ENST00000448361.1|COMMD3|ENSG00000148444.11|COMM domain containing 3
hg19_v2_chr12_-_49075941_49076001	0.0233242	SOX9	ENST00000553086.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2 	ENST00000548304.1|KANSL2|ENSG00000139620.8|KAT8 regulatory NSL complex subunit 2
hg19_v2_chrX_-_19817869_19817922	0.0228047	SOX9	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr3_+_111260856_111260948	0.0226237	SOX9	ENST00000352690.4|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr5_+_140729649_140729828	0.0225685	SOX9	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr20_+_37554955_37555067	0.0225044	SOX9	ENST00000217429.4|FAM83D|ENSG00000101447.9|family with sequence similarity 83, member D
hg19_v2_chr20_+_61147651_61147666	0.0225014	SOX9	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr12_-_18243119_18243133	0.0224564	SOX9	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr3_+_51422478_51422478	0.0222868	SOX9	ENST00000528157.1|MANF|ENSG00000145050.11|mesencephalic astrocyte-derived neurotrophic factor
hg19_v2_chr12_+_69633407_69633422	0.0221192	SOX9	ENST00000551516.1|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr18_+_6729698_6729724	0.0215223	SOX9	ENST00000383472.4|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr11_-_10830463_10830494	0.0210142	SOX9	ENST00000527419.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530211.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000530702.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000524932.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2 	ENST00000532570.1|EIF4G2|ENSG00000110321.11|eukaryotic translation initiation factor 4 gamma, 2
hg19_v2_chr1_-_151689259_151689290	0.0209886	SOX9	ENST00000420342.1|CELF3|ENSG00000159409.10|CUGBP, Elav-like family member 3 	ENST00000290583.4|CELF3|ENSG00000159409.10|CUGBP, Elav-like family member 3
hg19_v2_chr7_+_120591170_120591244	0.020945	SOX9	ENST00000431467.1|ING3|ENSG00000071243.11|inhibitor of growth family, member 3
hg19_v2_chr16_+_22524844_22525003	0.0208244	SOX9	ENST00000538606.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000424340.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000517539.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000528249.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr19_-_1592652_1592762	0.0204609	SOX9	ENST00000156825.1|MBD3|ENSG00000071655.13|methyl-CpG binding domain protein 3 	ENST00000434436.3|MBD3|ENSG00000071655.13|methyl-CpG binding domain protein 3
hg19_v2_chr11_+_1411503_1411521	0.0203542	SOX9	ENST00000526678.1|BRSK2|ENSG00000174672.11|BR serine/threonine kinase 2
hg19_v2_chr17_-_39684550_39684567	0.0202161	SOX9	ENST00000455635.1|KRT19|ENSG00000171345.9|keratin 19 	ENST00000361566.3|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr19_-_8408139_8408153	0.0196185	SOX9	ENST00000330915.3|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000593649.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000595639.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3
hg19_v2_chr12_-_91398796_91398808	0.0188733	SOX9	ENST00000261172.3|EPYC|ENSG00000083782.3|epiphycan 	ENST00000551767.1|EPYC|ENSG00000083782.3|epiphycan
hg19_v2_chr4_+_78078304_78078406	0.0187684	SOX9	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr12_-_95611149_95611249	0.018423	SOX9	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr14_+_93357749_93357769	0.0184003	SOX9	ENST00000557689.1|RP11-862G15.1|ENSG00000258742.1|RP11-862G15.1
hg19_v2_chr12_-_99288536_99288677	0.0183841	SOX9	ENST00000549797.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000333732.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000341752.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr2_-_70475586_70475646	0.0183077	SOX9	ENST00000416149.2|TIA1|ENSG00000116001.11|TIA1 cytotoxic granule-associated RNA binding protein
hg19_v2_chr14_+_59655369_59655458	0.0182651	SOX9	ENST00000360909.3|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000351081.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000556135.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1
hg19_v2_chr7_-_22233442_22233527	0.0179685	SOX9	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr2_-_1748214_1748295	0.0179527	SOX9	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr14_+_102276209_102276242	0.0178422	SOX9	ENST00000445439.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000334743.5|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557095.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr17_+_74723031_74723047	0.0169802	SOX9	ENST00000586200.1|METTL23|ENSG00000181038.9|methyltransferase like 23
hg19_v2_chr17_-_62308087_62308116	0.0168601	SOX9	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr11_-_35441524_35441578	0.0163038	SOX9	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr3_+_16306837_16306973	0.0158875	SOX9	ENST00000606098.1|OXNAD1|ENSG00000154814.9|oxidoreductase NAD-binding domain containing 1
hg19_v2_chr17_-_73505961_73505976	0.0156341	SOX9	ENST00000433559.2|CASKIN2|ENSG00000177303.5|CASK interacting protein 2
hg19_v2_chr13_-_31040060_31040102	0.0154168	SOX9	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr3_-_49058479_49058491	0.0151262	SOX9	ENST00000440857.1|DALRD3|ENSG00000178149.12|DALR anticodon binding domain containing 3
hg19_v2_chr8_+_126442563_126442624	0.0148696	SOX9	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chr7_-_122840015_122840040	0.014676	SOX9	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr8_+_42196000_42196021	0.014609	SOX9	ENST00000518925.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta 	ENST00000538005.1|POLB|ENSG00000070501.7|polymerase (DNA directed), beta
hg19_v2_chr11_-_35440579_35440617	0.014334	SOX9	ENST00000606205.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr18_-_34408693_34408780	0.0140445	SOX9	ENST00000587382.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000589049.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2 	ENST00000587129.1|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr12_+_49761147_49761167	0.0139545	SOX9	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chrX_-_132352373_132352384	0.0138931	SOX9	ENST00000310125.4|TFDP3|ENSG00000183434.9|transcription factor Dp family, member 3
hg19_v2_chr8_+_98656336_98656535	0.013883	SOX9	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr6_+_37787458_37787587	0.0137914	SOX9	ENST00000373391.2|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr9_-_127905736_127905815	0.0137659	SOX9	ENST00000336505.6|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion 	ENST00000373549.4|SCAI|ENSG00000173611.13|suppressor of cancer cell invasion
hg19_v2_chr15_+_76629064_76629073	0.0136203	SOX9	ENST00000290759.4|ISL2|ENSG00000159556.5|ISL LIM homeobox 2
hg19_v2_chr17_-_10372875_10372876	0.0136026	SOX9	ENST00000255381.2|MYH4|ENSG00000264424.1|myosin, heavy chain 4, skeletal muscle
hg19_v2_chr22_-_50523760_50523787	0.0134385	SOX9	ENST00000395876.2|MLC1|ENSG00000100427.11|megalencephalic leukoencephalopathy with subcortical cysts 1
hg19_v2_chr14_-_51027838_51027851	0.0133079	SOX9	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr1_+_27668505_27668582	0.0131933	SOX9	ENST00000318074.5|SYTL1|ENSG00000142765.13|synaptotagmin-like 1
hg19_v2_chr11_+_34073195_34073266	0.0130859	SOX9	ENST00000341394.4|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr14_+_67291158_67291192	0.0127934	SOX9	ENST00000555456.1|GPHN|ENSG00000171723.11|gephyrin
hg19_v2_chr19_+_54641444_54641504	0.0125864	SOX9	ENST00000221232.5|CNOT3|ENSG00000088038.13|CCR4-NOT transcription complex, subunit 3 	ENST00000358389.3|CNOT3|ENSG00000088038.13|CCR4-NOT transcription complex, subunit 3
hg19_v2_chr14_+_85996507_85996572	0.0122761	SOX9	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr6_+_37787262_37787291	0.0121307	SOX9	ENST00000287218.4|ZFAND3|ENSG00000156639.7|zinc finger, AN1-type domain 3
hg19_v2_chr19_-_15490568_15490606	0.0116722	SOX9	ENST00000269701.2|AKAP8|ENSG00000105127.4|A kinase (PRKA) anchor protein 8
hg19_v2_chr14_-_90421028_90421121	0.0116643	SOX9	ENST00000267544.9|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000316738.7|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000538485.2|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11 	ENST00000556609.1|EFCAB11|ENSG00000140025.11|EF-hand calcium binding domain 11
hg19_v2_chr12_+_8666126_8666182	0.011392	SOX9	ENST00000299665.2|CLEC4D|ENSG00000166527.3|C-type lectin domain family 4, member D
hg19_v2_chr4_-_83351005_83351019	0.0109409	SOX9	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr6_+_56954867_56954882	0.0106869	SOX9	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr12_-_52887034_52887049	0.0106528	SOX9	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr1_-_221915418_221915518	0.0105657	SOX9	ENST00000323825.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10 	ENST00000366899.3|DUSP10|ENSG00000143507.13|dual specificity phosphatase 10
hg19_v2_chr12_-_31479107_31479142	0.0105391	SOX9	ENST00000542983.1|FAM60A|ENSG00000139146.9|family with sequence similarity 60, member A
hg19_v2_chr12_-_91451758_91451763	0.0105379	SOX9	ENST00000266719.3|KERA|ENSG00000139330.5|keratocan
hg19_v2_chr9_+_116263639_116263707	0.00987678	SOX9	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr12_-_88974236_88974256	0.00946539	SOX9	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr9_-_74979420_74979580	0.0091761	SOX9	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr10_+_89622870_89622870	0.00863997	SOX9	ENST00000371953.3|PTEN|ENSG00000171862.5|phosphatase and tensin homolog
hg19_v2_chr1_-_152297679_152297722	0.00855064	SOX9	ENST00000368799.1|FLG|ENSG00000143631.10|filaggrin
hg19_v2_chr17_+_74722912_74722956	0.0082158	SOX9	ENST00000589977.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000591571.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000592849.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000586738.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000588783.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000588563.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000586752.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000588302.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000590964.1|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000341249.6|METTL23|ENSG00000181038.9|methyltransferase like 23 	ENST00000588822.1|METTL23|ENSG00000181038.9|methyltransferase like 23
hg19_v2_chr12_+_95611569_95611608	0.00726569	SOX9	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr1_+_155294342_155294368	0.00719578	SOX9	ENST00000292254.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr11_+_117103441_117103452	0.00713433	SOX9	ENST00000531287.1|RNF214|ENSG00000167257.6|ring finger protein 214 	ENST00000531452.1|RNF214|ENSG00000167257.6|ring finger protein 214
hg19_v2_chr5_-_157079428_157079452	0.00710775	SOX9	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr13_-_27334879_27334930	0.00709822	SOX9	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr16_+_56970567_56970647	0.00700882	SOX9	ENST00000563911.1|HERPUD1|ENSG00000051108.10|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
hg19_v2_chr1_+_180897269_180897295	0.00685069	SOX9	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr7_-_16685422_16685448	0.00684946	SOX9	ENST00000306999.2|ANKMY2|ENSG00000106524.4|ankyrin repeat and MYND domain containing 2
hg19_v2_chr5_-_168006591_168006638	0.00675861	SOX9	ENST00000239231.6|PANK3|ENSG00000120137.6|pantothenate kinase 3
hg19_v2_chr3_-_48754599_48754711	0.00657245	SOX9	ENST00000413654.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000454335.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000440424.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449610.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443964.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000417896.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000413298.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449563.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443853.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000437427.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000446860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000412850.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000424035.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000340879.4|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000431721.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000434860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000328631.5|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000432678.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2
hg19_v2_chr12_-_10151773_10151899	0.00653837	SOX9	ENST00000298527.6|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B 	ENST00000348658.4|CLEC1B|ENSG00000165682.10|C-type lectin domain family 1, member B
hg19_v2_chr1_+_228337553_228337602	0.00633257	SOX9	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr9_+_116263778_116263793	0.00627554	SOX9	ENST00000394646.3|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr1_+_155294264_155294332	0.00612911	SOX9	ENST00000368349.4|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr14_+_52456327_52456344	0.00591999	SOX9	ENST00000556760.1|C14orf166|ENSG00000087302.4|chromosome 14 open reading frame 166
hg19_v2_chr2_-_65357225_65357267	0.00575349	SOX9	ENST00000398529.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409751.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000356214.7|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409892.1|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family 	ENST00000409784.3|RAB1A|ENSG00000138069.12|RAB1A, member RAS oncogene family
hg19_v2_chr19_+_12949251_12949370	0.0053727	SOX9	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chrX_+_85403487_85403625	0.00529505	SOX9	ENST00000373125.4|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr12_-_11508520_11508686	0.00508473	SOX9	ENST00000545626.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1 	ENST00000500254.2|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr1_+_6640108_6640148	0.00498136	SOX9	ENST00000377674.4|ZBTB48|ENSG00000204859.7|zinc finger and BTB domain containing 48 	ENST00000488936.1|ZBTB48|ENSG00000204859.7|zinc finger and BTB domain containing 48
hg19_v2_chr10_-_120101752_120101791	0.00491957	SOX9	ENST00000369170.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A
hg19_v2_chr4_+_175205038_175205094	0.00485432	SOX9	ENST00000457424.2|CEP44|ENSG00000164118.8|centrosomal protein 44kDa 	ENST00000514712.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr5_-_157079372_157079395	0.00476936	SOX9	ENST00000311371.5|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chrX_+_85403445_85403479	0.00454351	SOX9	ENST00000373131.1|DACH2|ENSG00000126733.16|dachshund homolog 2 (Drosophila)
hg19_v2_chr10_+_22605304_22605372	0.00451235	SOX9	ENST00000475460.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000602390.1|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough 	ENST00000456711.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000444869.1|COMMD3|ENSG00000148444.11|COMM domain containing 3 	ENST00000489125.2|COMMD3-BMI1|ENSG00000269897.1|COMMD3-BMI1 readthrough
hg19_v2_chr16_-_25026641_25026698	0.00442656	SOX9	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr3_+_49507559_49507580	0.00397999	SOX9	ENST00000421560.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000308775.2|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000545947.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000541308.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000539901.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000538711.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000418588.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1)
hg19_v2_chr17_+_30813576_30813637	0.00288741	SOX9	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr3_-_16306432_16306491	0.00226515	SOX9	ENST00000383775.4|DPH3|ENSG00000154813.5|diphthamide biosynthesis 3 	ENST00000488423.1|DPH3|ENSG00000154813.5|diphthamide biosynthesis 3
hg19_v2_chr11_-_71814276_71814349	0.00217324	SOX9	ENST00000538404.1|LAMTOR1|ENSG00000149357.5|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 	ENST00000535107.1|LAMTOR1|ENSG00000149357.5|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 	ENST00000545249.1|LAMTOR1|ENSG00000149357.5|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
hg19_v2_chr20_+_60697480_60697583	0.00154399	SOX9	ENST00000370915.1|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000253001.4|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000400318.2|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279068.6|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279069.7|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr19_-_17375541_17375605	0.00106729	SOX9	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr4_-_87028478_87028514	0.0010305	SOX9	ENST00000515400.1|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395157.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr14_+_91580357_91580454	0.000944559	SOX9	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr2_+_46926048_46926095	0.000903094	SOX9	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr3_+_111260980_111261016	0.000762736	SOX9	ENST00000438817.2|CD96|ENSG00000153283.8|CD96 molecule
hg19_v2_chr5_+_140767452_140767452	0.00075607	SOX9	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr14_+_91580732_91580746	0.000161103	SOX9	ENST00000519019.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523816.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517518.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr22_-_22292934_22292967	9.03879e-05	SOX9	ENST00000538191.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000424647.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000407142.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F
